Save movie: No space left on device

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-15.4.1-arm64-arm-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
warnings | No presets found in custom preset folder
/Users/mphill65/Python_Scripts/chimera_prests/.git  
Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with
that from NMRSTAR bundle  
  

> alias rd ui mousemode right distance

> alias rs ui mousemode right select

> alias nmr1 hide #*.2-20 models

> alias slall label $1 text
> "{0.label_one_letter_code}{0.number}{0.insertion_code}"

> alias lmearo label $1:thr,met,ala,leu,val,ile,phe,tyr text
> "{0.label_one_letter_code}{0.number}{0.insertion_code}"

> alias showbb show $1@N,C,CA,O,H; cartoon $1 suppress false; transparency $1
> 50 target c; hide $1:hoh

> alias hidebb hide $1@N,C,CA,O,H target a; transparency $1 0 target c

> alias sdist ui tool show Distances

> alias showmet show $1:ile,leu,val,met,ala,thr target a; hide H; color $1:ile
> paleturquoise target a; color $1:leu lightsalmon target a; color $1:val
> khaki target a; color $1:met thistle target a; color $1:ala yellowgreen
> target ab; color $1:thr aquamarine target a;color byhetero target a

> alias showaro show $1:phe,tyr,his,trp target ab; hide H; color $1:phe plum
> target a; color $1:tyr lightpink target a; color byhetero target a

> alias csf cartoon $1 suppress false

> alias rota swapaa interactive $1 $2

> alias phi information residue $1 attribute phi

> alias psi information residue $1 attribute psi

> alias chi1 information residue $1 attribute chi1

> alias chi2 information residue $1 attribute chi2

> alias dd distance delete

> alias rd ui mousemode right distance

> alias rs ui mousemode right select

> alias nmr1 hide #*.2-20 models

> alias slall label sel text
> "{0.label_one_letter_code}{0.number}{0.insertion_code}"

> alias lmearo label $1:thr,met,ala,leu,val,ile,phe,tyr text
> "{0.label_one_letter_code}{0.number}{0.insertion_code}"

> alias showbb show $1@N,C,CA,O,H; cartoon $1 suppress false; transparency $1
> 50 target c; hide $1:hoh

> alias hidebb hide $1@N,C,CA,O,H target a; transparency $1 0 target c

> alias sdist ui tool show Distances

> alias showmet show $1:ile,leu,val,met,ala,thr target a; hide H; color $1:ile
> paleturquoise target a; color $1:leu lightsalmon target a; color $1:val
> khaki target a; color $1:met thistle target a; color $1:ala yellowgreen
> target ab; color $1:thr aquamarine target a;color byhetero target a

> alias showaro show $1:phe,tyr,his,trp target ab; hide H; color $1:phe plum
> target a; color $1:tyr lightpink target a; color byhetero target a

UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open plusACP-Mg.cxc

> color name color0 rgb(254,217,118)

Color 'color0' is opaque: rgb(99.6%, 85.1%, 46.3%) hex: #fed976

  

> color name color1 rgb(254,178,76)

Color 'color1' is opaque: rgb(99.6%, 69.8%, 29.8%) hex: #feb24c

  

> color name color2 rgb(253,141,60)

Color 'color2' is opaque: rgb(99.2%, 55.3%, 23.5%) hex: #fd8d3c

  

> color name color3 rgb(252,78,42)

Color 'color3' is opaque: rgb(98.8%, 30.6%, 16.5%) hex: #fc4e2a

  

> color name color4 rgb(189,0,38)

Color 'color4' is opaque: rgb(74.1%, 0%, 14.9%) hex: #bd0026

  

> color name color5 rgb(150,0,0)

Color 'color5' is opaque: rgb(58.8%, 0%, 0%) hex: #960000

  

> key color0:0.00 color1:1.00 color2:2.00 color3:3.00 color4:4.00 color5:5.00
> fontSize 1 colorTreatment distinct numericLabelSpacing equal size
> 0.20000,0.03000 pos 0.75,0.03

> 2dlabels text "Δδ (¹³C ppm)" size 24 xpos 0.80 ypos 0.067

> open
> /Users/mphill65/Mapk6/Mapk6_9-341/20250716_ILVMATYF_pERK3-9-341_2mMACP-5mMmg_80uM_20C_1100/NODA/Round2/ERK3_MK5_cya15nu_ref_ens.pdb
> maxModels 1

Summary of feedback from opening
/Users/mphill65/Mapk6/Mapk6_9-341/20250716_ILVMATYF_pERK3-9-341_2mMACP-5mMmg_80uM_20C_1100/NODA/Round2/ERK3_MK5_cya15nu_ref_ens.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK PdbStat -- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  
Ignored bad PDB record found on line 2  
REMARK PdbStat -- PDB COORDINATES FOR ALL_KK_CNS.PDB, 20 MODEL/S
ALL_KK_CNS.PDB  
  
Ignored bad PDB record found on line 3  
REMARK PdbStat -- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  
Ignored bad PDB record found on line 41  
REMARK ===============================================================  
  
Ignored bad PDB record found on line 43  
REMARK energies: -16069, 1401.86, 1612.22, 538.115, 2235.42  
  
198 messages similar to the above omitted  
  
Chain information for ERK3_MK5_cya15nu_ref_ens.pdb #3  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> hide #3 target a

> rename #3 plusACP-Mg_CS_CMe

> color #3 gray(150)

> show nucleic

> hide #3: protein|solvent|H target as

> surface hidePatches

> style (protein|nucleic|solvent) & @@draw_mode=0 stick

Changed 0 atom styles  

> cartoon style modeHelix tube sides 20

> graphics silhouettes true

> cartoon style radius 1.5

> set bgColor white

> style :ala,leu,ile,val,met,thr ball

Changed 2861 atom styles  

> color
> #3:26,53,63,78,80,84,91,115,119,124,137,166,167,175,203,263,279,282,296
> color0 target a

> color #3:48,63,104,119,133,137,175,226,245,259,306 color1 target a

> color #3:16,77,194,285,293,297,310 color2 target a

> color #3:92,297 color3 target a

> color #3:92,111,217,218 color4 target a

> color #3:231 color5 target a

> color #3:129 color black

> size stickRadius 0.27

Changed 7478 bond radii  

> size atomRadius 2.7

Changed 7403 atom radii  

> size :*@CA,CB,O*,N,C atomRadius 0.7

Changed 2528 atom radii  

> size :ala@CB atomRadius 2.7

Changed 23 atom radii  

> size :met@CG,SD atomRadius 0.7

Changed 26 atom radii  

> size :leu,ile@CG* atomRadius 0.7

Changed 120 atom radii  

> size :phe,try@CD*,CG*,CZ* atomRadius 0.7

Changed 56 atom radii  

> show
> #3:26,53,63,78,80,84,91,115,119,124,137,166,167,175,203,263,279,282,296,48,63,104,119,133,137,175,226,245,259,306,16,77,194,285,293,297,310,92,297,92,111,217,218,231,129
> target a

> 2dlabels text 0.07 size 20 xpos 0.75 ypos 0.01

> 2dlabels text 0.08 size 20 xpos 0.785 ypos 0.01

> 2dlabels text 0.10 size 20 xpos 0.82 ypos 0.01

> 2dlabels text 0.11 size 20 xpos 0.855 ypos 0.01

> 2dlabels text 0.12 size 20 xpos 0.89 ypos 0.01

> 2dlabels text 0.13 size 20 xpos 0.925 ypos 0.01

> rename #2.2-7 id #2.1

> label
> #3:26,53,63,78,80,84,91,115,119,124,137,166,167,175,203,263,279,282,296,48,63,104,119,133,137,175,226,245,259,306,16,77,194,285,293,297,310,92,297,92,111,217,218,231,129
> text {0.label_one_letter_code}{0.number}

> 2dlabels text "Δδ (¹H ppm)" size 24 xpos 0.80 ypos 0.067

> open
> /Users/mphill65/Mapk6/Mapk6_9-341/20250716_ILVMATYF_pERK3-9-341_2mMACP-5mMmg_80uM_20C_1100/NODA/Round2/ERK3_MK5_cya15nu_ref_ens.pdb
> maxModels 1

Summary of feedback from opening
/Users/mphill65/Mapk6/Mapk6_9-341/20250716_ILVMATYF_pERK3-9-341_2mMACP-5mMmg_80uM_20C_1100/NODA/Round2/ERK3_MK5_cya15nu_ref_ens.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK PdbStat -- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  
Ignored bad PDB record found on line 2  
REMARK PdbStat -- PDB COORDINATES FOR ALL_KK_CNS.PDB, 20 MODEL/S
ALL_KK_CNS.PDB  
  
Ignored bad PDB record found on line 3  
REMARK PdbStat -- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  
Ignored bad PDB record found on line 41  
REMARK ===============================================================  
  
Ignored bad PDB record found on line 43  
REMARK energies: -16069, 1401.86, 1612.22, 538.115, 2235.42  
  
198 messages similar to the above omitted  
  
Chain information for ERK3_MK5_cya15nu_ref_ens.pdb #4  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> hide #4 target a

> rename #4 plusACP-Mg_CS_HMe

> color #4 gray(150)

> show nucleic

> hide #3: protein|solvent|H target as

> surface hidePatches

> style (protein|nucleic|solvent) & @@draw_mode=0 stick

Changed 0 atom styles  

> cartoon style modeHelix tube sides 20

> graphics silhouettes true

> cartoon style radius 1.5

> set bgColor white

> style :ala,leu,ile,val,met,thr ball

Changed 5722 atom styles  

> color
> #4:16,33,51,53,62,69,77,80,83,99,101,140,153,162,169,217,221,226,227,231,241,251,259,262,281,282,289,290,296,305,316
> color0 target a

> color
> #4:16,37,51,53,59,66,69,83,84,98,101,106,111,115,118,119,129,133,140,148,149,153,202,203,218,223,241,244,245,250,251,289,290,297,310,311,323
> color1 target a

> color
> #4:37,47,78,84,104,107,115,118,119,124,136,143,158,202,203,204,215,248,272,278,293
> color2 target a

> color #4:48,72,107,124,136,137,158,167,248,272 color3 target a

> color #4:23,46,72,271 color4 target a

> color #4:26,263,265,338 color5 target a

> size stickRadius 0.27

Changed 14956 bond radii  

> size atomRadius 2.7

Changed 14806 atom radii  

> size :*@CA,CB,O*,N,C atomRadius 0.7

Changed 5056 atom radii  

> size :ala@CB atomRadius 2.7

Changed 46 atom radii  

> size :met@CG,SD atomRadius 0.7

Changed 52 atom radii  

> size :leu,ile@CG* atomRadius 0.7

Changed 240 atom radii  

> size :phe,try@CD*,CG*,CZ* atomRadius 0.7

Changed 112 atom radii  

> show
> #4:16,33,51,53,62,69,77,80,83,99,101,140,153,162,169,217,221,226,227,231,241,251,259,262,281,282,289,290,296,305,316,16,37,51,53,59,66,69,83,84,98,101,106,111,115,118,119,129,133,140,148,149,153,202,203,218,223,241,244,245,250,251,289,290,297,310,311,323,37,47,78,84,104,107,115,118,119,124,136,143,158,202,203,204,215,248,272,278,293,48,72,107,124,136,137,158,167,248,272,23,46,72,271,26,263,265,338
> target a

> 2dlabels text 0.01 size 20 xpos 0.75 ypos 0.01

> 2dlabels text 0.01 size 20 xpos 0.785 ypos 0.01

> 2dlabels text 0.01 size 20 xpos 0.82 ypos 0.01

> 2dlabels text 0.01 size 20 xpos 0.855 ypos 0.01

> 2dlabels text 0.02 size 20 xpos 0.89 ypos 0.01

> 2dlabels text 0.02 size 20 xpos 0.925 ypos 0.01

> rename #2.3-8 id #2.2

> label
> #4:16,33,51,53,62,69,77,80,83,99,101,140,153,162,169,217,221,226,227,231,241,251,259,262,281,282,289,290,296,305,316,16,37,51,53,59,66,69,83,84,98,101,106,111,115,118,119,129,133,140,148,149,153,202,203,218,223,241,244,245,250,251,289,290,297,310,311,323,37,47,78,84,104,107,115,118,119,124,136,143,158,202,203,204,215,248,272,278,293,48,72,107,124,136,137,158,167,248,272,23,46,72,271,26,263,265,338
> text {0.label_one_letter_code}{0.number}

> 2dlabels text "Δδₐᵥₑ (HC ppm)" size 24 xpos 0.79 ypos 0.067

> open
> /Users/mphill65/Mapk6/Mapk6_9-341/20250716_ILVMATYF_pERK3-9-341_2mMACP-5mMmg_80uM_20C_1100/NODA/Round2/ERK3_MK5_cya15nu_ref_ens.pdb
> maxModels 1

Summary of feedback from opening
/Users/mphill65/Mapk6/Mapk6_9-341/20250716_ILVMATYF_pERK3-9-341_2mMACP-5mMmg_80uM_20C_1100/NODA/Round2/ERK3_MK5_cya15nu_ref_ens.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK PdbStat -- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  
Ignored bad PDB record found on line 2  
REMARK PdbStat -- PDB COORDINATES FOR ALL_KK_CNS.PDB, 20 MODEL/S
ALL_KK_CNS.PDB  
  
Ignored bad PDB record found on line 3  
REMARK PdbStat -- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  
Ignored bad PDB record found on line 41  
REMARK ===============================================================  
  
Ignored bad PDB record found on line 43  
REMARK energies: -16069, 1401.86, 1612.22, 538.115, 2235.42  
  
198 messages similar to the above omitted  
  
Chain information for ERK3_MK5_cya15nu_ref_ens.pdb #5  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> hide #5 target a

> rename #5 plusACP-Mg_CS_wavg_CMe

> color #5 gray(150)

> show nucleic

> hide #5: protein|solvent|H target as

> surface hidePatches

> style (protein|nucleic|solvent) & @@draw_mode=0 stick

Changed 0 atom styles  

> cartoon style modeHelix tube sides 20

> graphics silhouettes true

> cartoon style radius 1.5

> set bgColor white

> style :ala,leu,ile,val,met,thr ball

Changed 8583 atom styles  

> color
> #5:23,37,46,51,59,66,68,69,72,78,80,91,101,107,116,118,136,140,143,148,153,156,158,160,166,169,178,202,210,215,223,225,235,241,244,260,271,272,278,279,282,289,290,316,323,338
> color0 target a

> color
> #5:16,26,48,53,63,77,84,104,115,119,124,133,137,167,175,194,203,226,245,259,263,285,293,296,306,338
> color1 target a

> color #5:16,92,217,218,285,297,310 color2 target a

> color #5:111,231 color3 target a

> color #5:129 color4 target a

> size stickRadius 0.27

Changed 22434 bond radii  

> size atomRadius 2.7

Changed 22209 atom radii  

> size :*@CA,CB,O*,N,C atomRadius 0.7

Changed 7584 atom radii  

> size :ala@CB atomRadius 2.7

Changed 69 atom radii  

> size :met@CG,SD atomRadius 0.7

Changed 78 atom radii  

> size :leu,ile@CG* atomRadius 0.7

Changed 360 atom radii  

> size :phe,try@CD*,CG*,CZ* atomRadius 0.7

Changed 168 atom radii  

> show
> #5:23,37,46,51,59,66,68,69,72,78,80,91,101,107,116,118,136,140,143,148,153,156,158,160,166,169,178,202,210,215,223,225,235,241,244,260,271,272,278,279,282,289,290,316,323,338,16,26,48,53,63,77,84,104,115,119,124,133,137,167,175,194,203,226,245,259,263,285,293,296,306,338,16,92,217,218,285,297,310,111,231,129
> target a

> 2dlabels text 0.03 size 20 xpos 0.75 ypos 0.01

> 2dlabels text 0.04 size 20 xpos 0.785 ypos 0.01

> 2dlabels text 0.06 size 20 xpos 0.82 ypos 0.01

> 2dlabels text 0.07 size 20 xpos 0.855 ypos 0.01

> 2dlabels text 0.08 size 20 xpos 0.89 ypos 0.01

> 2dlabels text 0.10 size 20 xpos 0.925 ypos 0.01

> rename #2.4-9 id #2.3

> label
> #5:23,37,46,51,59,66,68,69,72,78,80,91,101,107,116,118,136,140,143,148,153,156,158,160,166,169,178,202,210,215,223,225,235,241,244,260,271,272,278,279,282,289,290,316,323,338,16,26,48,53,63,77,84,104,115,119,124,133,137,167,175,194,203,226,245,259,263,285,293,296,306,338,16,92,217,218,285,297,310,111,231,129
> text {0.label_one_letter_code}{0.number}

> 2dlabels text "1 – I ∕ I₀" size 24 xpos 0.82 ypos 0.066 margin 6

> open
> /Users/mphill65/Mapk6/Mapk6_9-341/20250716_ILVMATYF_pERK3-9-341_2mMACP-5mMmg_80uM_20C_1100/NODA/Round2/ERK3_MK5_cya15nu_ref_ens.pdb
> maxModels 1

Summary of feedback from opening
/Users/mphill65/Mapk6/Mapk6_9-341/20250716_ILVMATYF_pERK3-9-341_2mMACP-5mMmg_80uM_20C_1100/NODA/Round2/ERK3_MK5_cya15nu_ref_ens.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK PdbStat -- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  
Ignored bad PDB record found on line 2  
REMARK PdbStat -- PDB COORDINATES FOR ALL_KK_CNS.PDB, 20 MODEL/S
ALL_KK_CNS.PDB  
  
Ignored bad PDB record found on line 3  
REMARK PdbStat -- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  
Ignored bad PDB record found on line 41  
REMARK ===============================================================  
  
Ignored bad PDB record found on line 43  
REMARK energies: -16069, 1401.86, 1612.22, 538.115, 2235.42  
  
198 messages similar to the above omitted  
  
Chain information for ERK3_MK5_cya15nu_ref_ens.pdb #6  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> hide #6 target a

> rename #6 plusACP-Mg_Intensity_CMe

> color #6 gray(150)

> show nucleic

> hide #6: protein|solvent|H target as

> surface hidePatches

> style (protein|nucleic|solvent) & @@draw_mode=0 stick

Changed 0 atom styles  

> cartoon style modeHelix tube sides 20

> graphics silhouettes true

> cartoon style radius 1.5

> set bgColor white

> style :ala,leu,ile,val,met,thr ball

Changed 11444 atom styles  

> color
> #6:9,16,21,33,46,52,53,59,63,72,78,80,84,91,95,98,99,101,104,107,115,116,118,119,124,125,129,133,136,137,140,148,149,153,158,166,167,174,178,188,192,202,203,204,215,217,218,225,226,227,231,238,241,243,245,259,260,262,265,271,278,281,282,289,290,293,297,302,305,310,311,316,323
> color black

> size stickRadius 0.27

Changed 29912 bond radii  

> size atomRadius 2.7

Changed 29612 atom radii  

> size :*@CA,CB,O*,N,C atomRadius 0.7

Changed 10112 atom radii  

> size :ala@CB atomRadius 2.7

Changed 92 atom radii  

> size :met@CG,SD atomRadius 0.7

Changed 104 atom radii  

> size :leu,ile@CG* atomRadius 0.7

Changed 480 atom radii  

> size :phe,try@CD*,CG*,CZ* atomRadius 0.7

Changed 224 atom radii  

> show
> #6:9,16,21,33,46,52,53,59,63,72,78,80,84,91,95,98,99,101,104,107,115,116,118,119,124,125,129,133,136,137,140,148,149,153,158,166,167,174,178,188,192,202,203,204,215,217,218,225,226,227,231,238,241,243,245,259,260,262,265,271,278,281,282,289,290,293,297,302,305,310,311,316,323
> target a

> 2dlabels text 1.65 size 20 xpos 0.75 ypos 0.01

> 2dlabels text 1.55 size 20 xpos 0.785 ypos 0.01

> 2dlabels text 1.44 size 20 xpos 0.82 ypos 0.01

> 2dlabels text 1.34 size 20 xpos 0.855 ypos 0.01

> 2dlabels text 1.23 size 20 xpos 0.89 ypos 0.01

> 2dlabels text 1.13 size 20 xpos 0.925 ypos 0.01

> rename #2.5-10 id #2.4

> label
> #6:9,16,21,33,46,52,53,59,63,72,78,80,84,91,95,98,99,101,104,107,115,116,118,119,124,125,129,133,136,137,140,148,149,153,158,166,167,174,178,188,192,202,203,204,215,217,218,225,226,227,231,238,241,243,245,259,260,262,265,271,278,281,282,289,290,293,297,302,305,310,311,316,323
> text {0.label_one_letter_code}{0.number}

> hide H

> lighting gentle

executed plusACP-Mg.cxc  

> hide #!6 models

> hide #!4 models

> hide #!3 models

> hide #!2.4 models

> hide #!2.2 models

> hide #!2.1 models

> color :342-473 purple

> movie record

> turn y 2 180

> wait 180

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 138, in invoke  
return self._func(self._name, data)  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/movie/movie.py", line 172, in capture_image  
i.save(save_path, self.img_fmt)  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/PIL/Image.py", line 2353, in save  
save_handler(self, fp, filename)  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/PIL/PpmImagePlugin.py", line 324, in _save  
ImageFile._save(im, fp, [("raw", (0, 0) + im.size, 0, (rawmode, 0, 1))])  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/PIL/ImageFile.py", line 505, in _save  
_encode_tile(im, fp, tile, bufsize, fh)  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/PIL/ImageFile.py", line 532, in _encode_tile  
s = encoder.encode_to_file(fh, bufsize)  
OSError: [Errno 28] No space left on device  
  
Error processing trigger "frame drawn":  
OSError: [Errno 28] No space left on device  
  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/PIL/ImageFile.py", line 532, in _encode_tile  
s = encoder.encode_to_file(fh, bufsize)  
  
See log for complete Python traceback.  
  

> movie encode /Users/mphill65/Desktop/movie6.mp4

/Applications/ChimeraX-1.6.1.app/Contents/bin/ffmpeg -r 25 -i
/var/folders/c5/3y8gz5_55_g714_b1jh7v_y00000gp/T/chimovie_6cI4-%05d.ppm -vf
crop=floor(in_w/2)*2:floor(in_h/2)*2:0:0 -y -vcodec libx264 -f mp4 -pix_fmt
yuv420p -crf 20 /Users/mphill65/Desktop/movie6.mp4  
stdout:  
  
stderr:  
ffmpeg version 3.2.4 Copyright (c) 2000-2017 the FFmpeg developers  
built with Apple clang version 11.0.0 (clang-1100.0.33.16)  
configuration: --prefix=/private/var/tmp/chimerax_build/v1.1/chimerax/build
--enable-gpl --enable-version3 --disable-network --disable-doc --disable-
devices --disable-ffplay --disable-ffserver --disable-ffprobe --enable-
libtheora --enable-libvpx --enable-libx264
--yasmexe=/private/var/tmp/chimerax_build/v1.1/chimerax/build/bin/yasm
--optflags=-O --extra-
cflags=-I/private/var/tmp/chimerax_build/v1.1/chimerax/build/include --extra-
ldflags='-O3 -Wall -Wextra
-L/private/var/tmp/chimerax_build/v1.1/chimerax/build/lib' --extra-libs=-ldl  
libavutil 55. 34.101 / 55. 34.101  
libavcodec 57. 64.101 / 57. 64.101  
libavformat 57. 56.101 / 57. 56.101  
libavdevice 57. 1.100 / 57. 1.100  
libavfilter 6. 65.100 / 6. 65.100  
libswscale 4. 2.100 / 4. 2.100  
libswresample 2. 3.100 / 2. 3.100  
libpostproc 54. 1.100 / 54. 1.100  
Input #0, image2, from
'/var/folders/c5/3y8gz5_55_g714_b1jh7v_y00000gp/T/chimovie_6cI4-%05d.ppm':  
Duration: 00:00:03.40, start: 0.000000, bitrate: N/A  
Stream #0:0: Video: ppm, rgb24, 3122x1794, 25 tbr, 25 tbn, 25 tbc  
[libx264 @ 0x7f9519010000] using cpu capabilities: MMX2 SSE2Fast SSSE3 SSE4.2  
[libx264 @ 0x7f9519010000] profile High, level 5.1  
[libx264 @ 0x7f9519010000] 264 - core 148 - H.264/MPEG-4 AVC codec - Copyleft
2003-2017 - http://www.videolan.org/x264.html - options: cabac=1 ref=3
deblock=1:0:0 analyse=0x3:0x113 me=hex subme=7 psy=1 psy_rd=1.00:0.00
mixed_ref=1 me_range=16 chroma_me=1 trellis=1 8x8dct=1 cqm=0 deadzone=21,11
fast_pskip=1 chroma_qp_offset=-2 threads=18 lookahead_threads=3
sliced_threads=0 nr=0 decimate=1 interlaced=0 bluray_compat=0
constrained_intra=0 bframes=3 b_pyramid=2 b_adapt=1 b_bias=0 direct=1
weightb=1 open_gop=0 weightp=2 keyint=250 keyint_min=25 scenecut=40
intra_refresh=0 rc_lookahead=40 rc=crf mbtree=1 crf=20.0 qcomp=0.60 qpmin=0
qpmax=69 qpstep=4 ip_ratio=1.40 aq=1:1.00  
Output #0, mp4, to '/Users/mphill65/Desktop/movie6.mp4':  
Metadata:  
encoder : Lavf57.56.101  
Stream #0:0: Video: h264 (libx264) ([33][0][0][0] / 0x0021), yuv420p,
3122x1794, q=-1--1, 25 fps, 12800 tbn, 25 tbc  
Metadata:  
encoder : Lavc57.64.101 libx264  
Side data:  
cpb: bitrate max/min/avg: 0/0/0 buffer size: 0 vbv_delay: -1  
Stream mapping:  
Stream #0:0 -> #0:0 (ppm (native) -> h264 (libx264))  
Press [q] to stop, [?] for help  
frame= 21 fps=0.0 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x
frame= 43 fps= 42 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x
frame= 51 fps= 33 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x
frame= 68 fps= 33 q=25.0 size= 504kB time=00:00:00.12 bitrate=34369.1kbits/s
speed=0.0579x frame= 82 fps= 32 q=25.0 size= 1338kB time=00:00:00.68
bitrate=16122.0kbits/s speed=0.264x av_interleaved_write_frame(): No space
left on device  
Error writing trailer of /Users/mphill65/Desktop/movie6.mp4: No space left on
deviceframe= 85 fps= 26 q=-1.0 Lsize= 4568kB time=00:00:02.68
bitrate=13962.6kbits/s speed=0.826x  
video:4570kB audio:0kB subtitle:0kB other streams:0kB global headers:0kB
muxing overhead: unknown  
[libx264 @ 0x7f9519010000] frame I:1 Avg QP:18.07 size:152999  
[libx264 @ 0x7f9519010000] frame P:21 Avg QP:24.80 size: 97976  
[libx264 @ 0x7f9519010000] frame B:63 Avg QP:27.95 size: 53600  
[libx264 @ 0x7f9519010000] consecutive B-frames: 1.2% 0.0% 0.0% 98.8%  
[libx264 @ 0x7f9519010000] mb I I16..4: 33.0% 54.7% 12.3%  
[libx264 @ 0x7f9519010000] mb P I16..4: 0.7% 1.6% 3.8% P16..4: 3.2% 3.3% 2.7%
0.0% 0.0% skip:84.7%  
[libx264 @ 0x7f9519010000] mb B I16..4: 0.1% 0.2% 0.4% B16..8: 5.2% 4.2% 3.5%
direct: 0.5% skip:85.9% L0:46.8% L1:45.0% BI: 8.2%  
[libx264 @ 0x7f9519010000] 8x8 transform intra:37.0% inter:16.9%  
[libx264 @ 0x7f9519010000] coded y,uvDC,uvAC intra: 36.0% 31.6% 27.9% inter:
3.7% 2.3% 1.6%  
[libx264 @ 0x7f9519010000] i16 v,h,dc,p: 72% 14% 6% 8%  
[libx264 @ 0x7f9519010000] i8 v,h,dc,ddl,ddr,vr,hd,vl,hu: 34% 6% 56% 1% 1% 0%
1% 1% 1%  
[libx264 @ 0x7f9519010000] i4 v,h,dc,ddl,ddr,vr,hd,vl,hu: 21% 18% 24% 6% 6% 7%
7% 6% 5%  
[libx264 @ 0x7f9519010000] i8c dc,h,v,p: 75% 11% 11% 4%  
[libx264 @ 0x7f9519010000] Weighted P-Frames: Y:0.0% UV:0.0%  
[libx264 @ 0x7f9519010000] ref P L0: 60.3% 9.3% 20.3% 10.1%  
[libx264 @ 0x7f9519010000] ref B L0: 85.0% 12.1% 2.9%  
[libx264 @ 0x7f9519010000] ref B L1: 94.7% 5.3%  
[libx264 @ 0x7f9519010000] kb/s:13146.55  
Conversion failed!  
  
An error occurred during encoding. See Reply Log for details.  
  
Error during MPEG encoding:  
\-----------------------------  
Exit value: 1  
Error message:  
stdout:  
  
stderr:  
ffmpeg version 3.2.4 Copyright (c) 2000-2017 the FFmpeg developers  
built with Apple clang version 11.0.0 (clang-1100.0.33.16)  
configuration: --prefix=/private/var/tmp/chimerax_build/v1.1/chimerax/build
--enable-gpl --enable-version3 --disable-network --disable-doc --disable-
devices --disable-ffplay --disable-ffserver --disable-ffprobe --enable-
libtheora --enable-libvpx --enable-libx264
--yasmexe=/private/var/tmp/chimerax_build/v1.1/chimerax/build/bin/yasm
--optflags=-O --extra-
cflags=-I/private/var/tmp/chimerax_build/v1.1/chimerax/build/include --extra-
ldflags='-O3 -Wall -Wextra
-L/private/var/tmp/chimerax_build/v1.1/chimerax/build/lib' --extra-libs=-ldl  
libavutil 55. 34.101 / 55. 34.101  
libavcodec 57. 64.101 / 57. 64.101  
libavformat 57. 56.101 / 57. 56.101  
libavdevice 57. 1.100 / 57. 1.100  
libavfilter 6. 65.100 / 6. 65.100  
libswscale 4. 2.100 / 4. 2.100  
libswresample 2. 3.100 / 2. 3.100  
libpostproc 54. 1.100 / 54. 1.100  
Input #0, image2, from
'/var/folders/c5/3y8gz5_55_g714_b1jh7v_y00000gp/T/chimovie_6cI4-%05d.ppm':  
Duration: 00:00:03.40, start: 0.000000, bitrate: N/A  
Stream #0:0: Video: ppm, rgb24, 3122x1794, 25 tbr, 25 tbn, 25 tbc  
[libx264 @ 0x7f9519010000] using cpu capabilities: MMX2 SSE2Fast SSSE3 SSE4.2  
[libx264 @ 0x7f9519010000] profile High, level 5.1  
[libx264 @ 0x7f9519010000] 264 - core 148 - H.264/MPEG-4 AVC codec - Copyleft
2003-2017 - http://www.videolan.org/x264.html - options: cabac=1 ref=3
deblock=1:0:0 analyse=0x3:0x113 me=hex subme=7 psy=1 psy_rd=1.00:0.00
mixed_ref=1 me_range=16 chroma_me=1 trellis=1 8x8dct=1 cqm=0 deadzone=21,11
fast_pskip=1 chroma_qp_offset=-2 threads=18 lookahead_threads=3
sliced_threads=0 nr=0 decimate=1 interlaced=0 bluray_compat=0
constrained_intra=0 bframes=3 b_pyramid=2 b_adapt=1 b_bias=0 direct=1
weightb=1 open_gop=0 weightp=2 keyint=250 keyint_min=25 scenecut=40
intra_refresh=0 rc_lookahead=40 rc=crf mbtree=1 crf=20.0 qcomp=0.60 qpmin=0
qpmax=69 qpstep=4 ip_ratio=1.40 aq=1:1.00  
Output #0, mp4, to '/Users/mphill65/Desktop/movie6.mp4':  
Metadata:  
encoder : Lavf57.56.101  
Stream #0:0: Video: h264 (libx264) ([33][0][0][0] / 0x0021), yuv420p,
3122x1794, q=-1--1, 25 fps, 12800 tbn, 25 tbc  
Metadata:  
encoder : Lavc57.64.101 libx264  
Side data:  
cpb: bitrate max/min/avg: 0/0/0 buffer size: 0 vbv_delay: -1  
Stream mapping:  
Stream #0:0 -> #0:0 (ppm (native) -> h264 (libx264))  
Press [q] to stop, [?] for help  
frame= 21 fps=0.0 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x
frame= 43 fps= 42 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x
frame= 51 fps= 33 q=0.0 size= 0kB time=00:00:00.00 bitrate=N/A speed= 0x
frame= 68 fps= 33 q=25.0 size= 504kB time=00:00:00.12 bitrate=34369.1kbits/s
speed=0.0579x frame= 82 fps= 32 q=25.0 size= 1338kB time=00:00:00.68
bitrate=16122.0kbits/s speed=0.264x av_interleaved_write_frame(): No space
left on device  
Error writing trailer of /Users/mphill65/Desktop/movie6.mp4: No space left on
deviceframe= 85 fps= 26 q=-1.0 Lsize= 4568kB time=00:00:02.68
bitrate=13962.6kbits/s speed=0.826x  
video:4570kB audio:0kB subtitle:0kB other streams:0kB global headers:0kB
muxing overhead: unknown  
[libx264 @ 0x7f9519010000] frame I:1 Avg QP:18.07 size:152999  
[libx264 @ 0x7f9519010000] frame P:21 Avg QP:24.80 size: 97976  
[libx264 @ 0x7f9519010000] frame B:63 Avg QP:27.95 size: 53600  
[libx264 @ 0x7f9519010000] consecutive B-frames: 1.2% 0.0% 0.0% 98.8%  
[libx264 @ 0x7f9519010000] mb I I16..4: 33.0% 54.7% 12.3%  
[libx264 @ 0x7f9519010000] mb P I16..4: 0.7% 1.6% 3.8% P16..4: 3.2% 3.3% 2.7%
0.0% 0.0% skip:84.7%  
[libx264 @ 0x7f9519010000] mb B I16..4: 0.1% 0.2% 0.4% B16..8: 5.2% 4.2% 3.5%
direct: 0.5% skip:85.9% L0:46.8% L1:45.0% BI: 8.2%  
[libx264 @ 0x7f9519010000] 8x8 transform intra:37.0% inter:16.9%  
[libx264 @ 0x7f9519010000] coded y,uvDC,uvAC intra: 36.0% 31.6% 27.9% inter:
3.7% 2.3% 1.6%  
[libx264 @ 0x7f9519010000] i16 v,h,dc,p: 72% 14% 6% 8%  
[libx264 @ 0x7f9519010000] i8 v,h,dc,ddl,ddr,vr,hd,vl,hu: 34% 6% 56% 1% 1% 0%
1% 1% 1%  
[libx264 @ 0x7f9519010000] i4 v,h,dc,ddl,ddr,vr,hd,vl,hu: 21% 18% 24% 6% 6% 7%
7% 6% 5%  
[libx264 @ 0x7f9519010000] i8c dc,h,v,p: 75% 11% 11% 4%  
[libx264 @ 0x7f9519010000] Weighted P-Frames: Y:0.0% UV:0.0%  
[libx264 @ 0x7f9519010000] ref P L0: 60.3% 9.3% 20.3% 10.1%  
[libx264 @ 0x7f9519010000] ref B L0: 85.0% 12.1% 2.9%  
[libx264 @ 0x7f9519010000] ref B L1: 94.7% 5.3%  
[libx264 @ 0x7f9519010000] kb/s:13146.55  
Conversion failed!  
  
\-----------------------------  
  




OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M2 Max
OpenGL vendor: Apple

Python: 3.9.11
Locale: en_US.UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: Mac Studio
      Model Identifier: Mac14,13
      Model Number: MQH73LL/A
      Chip: Apple M2 Max
      Total Number of Cores: 12 (8 performance and 4 efficiency)
      Memory: 32 GB
      System Firmware Version: 11881.121.1
      OS Loader Version: 11881.101.1

Software:

    System Software Overview:

      System Version: macOS 15.4.1 (24E263)
      Kernel Version: Darwin 24.4.0
      Time since boot: 25 days, 6 hours, 14 minutes

Graphics/Displays:

    Apple M2 Max:

      Chipset Model: Apple M2 Max
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 30
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        DELL U3223QE:
          Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
          UI Looks like: 3840 x 2160 @ 60.00Hz
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
        DELL U3223QE:
          Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
          UI Looks like: 3840 x 2160 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported


Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.2.22
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
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    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
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    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
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    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
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    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
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    pytz: 2023.3
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    qtconsole: 5.4.0
    QtPy: 2.3.1
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    requests: 2.28.2
    scipy: 1.9.3
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    setuptools-scm: 7.0.5
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    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
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    typing-extensions: 4.5.0
    tzdata: 2023.3
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    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    zipp: 3.15.0