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Opened 3 months ago
Last modified 3 months ago
#18205 assigned defect
AllMetal3D: session save: 'AllMetal3D' object has no attribute 'line_edit'
| Reported by: | Owned by: | Simon Duerr | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.22631
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Replace this text with list of actions that caused this problem to occur
Log:
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "C:\Users\wij17944\Desktop\20250711_PRKCE\PRKCE ATP\20250715_PRKCE WT
> and ATP_2.1.cxs" format session
Log from Tue Jul 15 16:20:27 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "C:\Users\wij17944\Desktop\20250711_PRKCE\20250715_PRKCE WT and
> ATP_2.1.cxs" format session
Log from Tue Jul 15 16:05:45 2025 Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> C:/Users/wij17944/Desktop/20250711_PRKCE/2025_07_15_prkce_wt_and_atp_kd/fold_2025_07_15_prkce_wt_and_atp_kd_model_0.cif
Summary of feedback from opening
C:/Users/wij17944/Desktop/20250711_PRKCE/2025_07_15_prkce_wt_and_atp_kd/fold_2025_07_15_prkce_wt_and_atp_kd_model_0.cif
---
notes | Fetching CCD ATP from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/P/ATP/ATP.cif
Fetching CCD MG from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/G/MG/MG.cif
Chain information for fold_2025_07_15_prkce_wt_and_atp_kd_model_0.cif #1
---
Chain | Description
A | .
Computing secondary structure
> hide #1 models
> show #1 models
> set bgColor white
> ui tool show "Side View"
> color #1 #1f77b4ff
> color ligand red+
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color ligand red+
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color ligand red
> color byhetero
> surface
> surface transparency 80
> surface transparency 85
> color mg red
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color byelement
> hide surfaces
> surface transparency 85
> color #1.1 #5555ff26
> hbonds ligand
6 hydrogen bonds found
> color #1.2 #ff7f0eff models
> contacts ligand
55 contacts
> clashes ligand
No clashes
> hide #1.4 models
> show #1.4 models
> hbonds
234 hydrogen bonds found
> hide #1.2 models
> show #1.2 models
> hide #!1.1 models
> hide #1.3 models
> color #1.2 #ff7f0eff models
> hbonds ligand
6 hydrogen bonds found
> hide #1.2 models
> show #1.2 models
> color #1.2 #ff7f0eff models
> show atoms
> hbonds
234 hydrogen bonds found
> undo
[Repeated 1 time(s)]
> color #1.2 #ff7f0eff models
> hbonds ligand
6 hydrogen bonds found
> hide #1.2 models
> show #1.2 models
> color #1.2 #ff7f0eff models
> ui tool show "Basic Actions"
> ui mousemode right clip
> ui mousemode right label
> label #1/A:10
> hide #1.5 models
> ui mousemode right distance
> ui tool show "Find Cavities"
No structures chosen
> ui tool show "Find Cavities"
pyKVFinder module not installed; fetching from PyPi repository...
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\kvfinder\\__init__.py", line 37, in register_command
import pyKVFinder
ModuleNotFoundError: No module named 'pyKVFinder'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\kvfinder\\__init__.py", line 42, in register_command
run(logger.session, "pip install pyKVFinder", log=False)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\pip.py", line 88, in pip
run_logged_pip(pip_cmd, session.logger)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\python_utils.py", line 143, in run_logged_pip
raise RuntimeError(s)
RuntimeError
Could not install pyKVFinder module from PyPi repository:
RuntimeError
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\python_utils.py", line 143, in run_logged_pip
raise RuntimeError(s)
See log for complete Python traceback.
>
Missing command
> show #1/A 1-10
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> show #1/A 1
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> show #1/A: 1-10
> ~show #1/A: 1-10
> ui mousemode right translate
> color #1/C: red
> color #/C: red
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color /C: red
> color /C: red
> hide #1.4 models
> show #1.4 models
> hide #1.4 models
> select ion
Expected an objects specifier or a keyword
> select :ion
Nothing selected
> select :Mg+2
Expected an objects specifier or a keyword
> color green :Mg+2
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> color green :ion
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> save C:\Users\wij17944/Desktop\image1.png supersample 3
> save C:\Users\wij17944/Desktop\image2.png supersample 3
> ui tool show "Add Hydrogens"
> addh #!1
Summary of feedback from adding hydrogens to
fold_2025_07_15_prkce_wt_and_atp_kd_model_0.cif #1
---
notes | Termini for fold_2025_07_15_prkce_wt_and_atp_kd_model_0.cif (#1) chain A determined from SEQRES records
Chain-initial residues that are actual N termini: /A ASN 1
Chain-initial residues that are not actual N termini:
Chain-final residues that are actual C termini: /A LYS 255
Chain-final residues that are not actual C termini:
236 hydrogen bonds
2039 hydrogens added
> undo
[Repeated 1 time(s)]
> ~struts hyrogens
> struts delete hyrogens
Expected an atoms specifier or a keyword
> struts delete Hydrogens
Expected an atoms specifier or a keyword
> show #1.5 models
> hide #1.5 models
> save "C:/Users/wij17944/Desktop/20250711_PRKCE/20250715_PRKCE WT and
> ATP_2.1.cxs"
——— End of log from Tue Jul 15 16:05:45 2025 ———
opened ChimeraX session
> hide #1.4 models
> ui tool show "Find Cavities"
pyKVFinder module not installed; fetching from PyPi repository...
> kvfinder
13 cavities found for fold_2025_07_15_prkce_wt_and_atp_kd_model_0.cif #1
fold_2025_07_15_prkce_wt_and_atp_kd_model_0.cif Cavities
---
ID | | Volume | Area | Points
1.6.9 | | 527.26 | 399.04 | 2441
1.6.1 | | 155.52 | 136.95 | 720
1.6.8 | | 123.98 | 137.22 | 574
1.6.6 | | 52.06 | 51.02 | 241
1.6.12 | | 43.2 | 48.53 | 200
1.6.11 | | 23.76 | 32.15 | 110
1.6.7 | | 17.28 | 36.68 | 80
1.6.13 | | 17.28 | 30.09 | 80
1.6.3 | | 9.29 | 19.91 | 43
1.6.5 | | 7.99 | 17.06 | 37
1.6.10 | | 7.34 | 12.41 | 34
1.6.4 | | 6.26 | 11.96 | 29
1.6.2 | | 5.62 | 10.62 | 26
> hide #1.6.1 models
> hide #1.6.2 models
> hide #1.6.3 models
> hide #1.6.4 models
> hide #1.6.5 models
> hide #1.6.6 models
> hide #1.6.7 models
> hide #1.6.8 models
> hide #1.6.9 models
> show #1.6.9 models
> hide #1.6.10 models
> hide #1.6.11 models
> hide #1.6.12 models
> hide #1.6.13 models
> save "C:/Users/wij17944/Desktop/20250711_PRKCE/20250715_PRKCE WT and
> ATP_2.1.cxs"
> remove element H
Unknown command: remove element H
> remove element Hydrogen
Unknown command: remove element Hydrogen
> delete H
> undo
> hide #1.6.13 models
> save "C:/Users/wij17944/Desktop/20250711_PRKCE/20250715_PRKCE WT and
> ATP_2.1.cxs"
> color #1.6.9 #55ffffff
> color #1.6.9 #ffff7fff
> color #1.6.9 yellow
> color #1.6.9 #ffaa7fff
> color #1.6.9 #ffaaffff
> color #1.6.9 #aaaaffff
> color #1.6.9 #aaffffff
> color #1.6.9 #7bb8b8ff
> hide #1.6.9 models
> show H
> ui tool show "Add Hydrogens"
> addh #!1
Summary of feedback from adding hydrogens to
fold_2025_07_15_prkce_wt_and_atp_kd_model_0.cif #!1
---
notes | Termini for fold_2025_07_15_prkce_wt_and_atp_kd_model_0.cif (#1) chain A determined from SEQRES records
Chain-initial residues that are actual N termini:
fold_2025_07_15_prkce_wt_and_atp_kd_model_0.cif #!1/A ASN 1
Chain-initial residues that are not actual N termini:
Chain-final residues that are actual C termini:
fold_2025_07_15_prkce_wt_and_atp_kd_model_0.cif #!1/A LYS 255
Chain-final residues that are not actual C termini:
235 hydrogen bonds
2039 hydrogens added
> save "C:/Users/wij17944/Desktop/20250711_PRKCE/20250715_PRKCE WT and
> ATP_2.1.cxs"
——— End of log from Tue Jul 15 16:20:27 2025 ———
opened ChimeraX session
> ui tool show "AlphaFold Error Plot"
Must choose path to predicted aligned file
> alphafold pae #1 file "C:/Users/wij17944/Desktop/20250711_PRKCE/PRKCE
> ATP/2025_07_15_prkce_wt_and_atp_kd/fold_2025_07_15_prkce_wt_and_atp_kd_full_data_0.json"
Structure fold_2025_07_15_prkce_wt_and_atp_kd_model_0.cif #!1 does not match
PAE matrix size 288.The structure has 255 polymer residues and 45 non-polymer
atoms
This can happen if chains or atoms were deleted from the AlphaFold model or if
the PAE data was applied to a structure that was not the one predicted by
AlphaFold. Use the full-length AlphaFold model to show predicted aligned
error.
> alphafold pae #1 file "G:/3.) - projects/4.) - PKCepsilon
> project/20250601_PRKCE structure prediction/AlphaFold3/PRKCE and ATP/full
> structure/fold_2025_01_14_16_33_prkce_wt_and_atp_full_data_0.json"
Structure fold_2025_07_15_prkce_wt_and_atp_kd_model_0.cif #!1 does not match
PAE matrix size 846.The structure has 255 polymer residues and 45 non-polymer
atoms
This can happen if chains or atoms were deleted from the AlphaFold model or if
the PAE data was applied to a structure that was not the one predicted by
AlphaFold. Use the full-length AlphaFold model to show predicted aligned
error.
> ui tool show AlphaFold
> alphafold match #1
1 AlphaFold model found using sequence similarity searches: A0A2K5W8T8 (chain
A)
AlphaFold prediction matching fold_2025_07_15_prkce_wt_and_atp_kd_model_0.cif
---
Chain| UniProt Id| UniProt Name| RMSD| Length| Seen| % Id
A | A0A2K5W8T8 | A0A2K5W8T8_MACFA | 0.60 | 255 | 255 | 100
Opened 1 AlphaFold model
> alphafold search #1
> hide #2.1 models
> show #2.1 models
> alphafold predict #1
Please cite ColabFold: Making protein folding accessible to all. Nature
Methods (2022) if you use these predictions.
Running AlphaFold prediction
> color #2.1 lime
> color #2.1 yellow
> color #2.1 magenta
> color #2.1 red
> color #2.1 lightgray
> color #2.1 cyan
> select #2.1
2036 atoms, 2080 bonds, 255 residues, 1 model selected
> select #2.1
2036 atoms, 2080 bonds, 255 residues, 1 model selected
> hide #2.1 atoms,ribbons
> hide #2.1 models
> show #2.1 models
> hide #2.1 models
> show #2.1 models
> show #2.1 atoms,ribbons
> hide #!1 models
> hide sel atoms
> show #!1 models
Fetching PAE using AlphaFold database version 4
> alphafold pae #2.1 uniprotId A0A2K5W8T8 version 4
> color bfactor #2.1 palette alphafold
2036 atoms, 255 residues, atom bfactor range 54.6 to 98.8
> alphafold pae #2.1 colorDomains true
> color #2.1/A:592 lime
> color #2.1/A:575 magenta
> color bfactor #2.1 palette alphafold
2036 atoms, 255 residues, atom bfactor range 54.6 to 98.8
> select subtract #2.1
Nothing selected
> color #1 #2ca02cff
> color #1 #ffaa7fff
> preset "initial styles" "original look"
Using preset: Initial Styles / Original Look
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> color bfactor #2.1 palette alphafold
2036 atoms, 255 residues, atom bfactor range 54.6 to 98.8
> color #1.1 #ff7f0eff
> color #1.1 #ff55ffff
> color #1.1 #ff7f0eff
> color #1.2 #ff7f0eff models
> color #1.2 #5500ffff models
> color #1.2 magenta models
> color #1.2 #ff7f0eff models
> view
> ui tool show "Side View"
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> graphics silhouettes false
> lighting shadows true
> lighting simple
> graphics silhouettes true
> ui mousemode right "color key"
> ui mousemode right translate
> undo
> ~key bar
Expected fewer arguments
> ~key
> ui mousemode right "move label"
> hide #!2 models
> hide #2.1 models
> show #1/A: 7
> color #1/A: 7 dark blue
> color #1 #1f77b4ff
> color #1/A: 7 dark blue
> colorligand red
Unknown command: colorligand red
> color ligand red
> color #!1 byhetero
> color #!1 bychain
> undo
[Repeated 4 time(s)]
> color #1/A: 29 pink
> color #1/A: 29 #ba55d3
> color #1/A: 9, 12 blue
> style #!1 sphere
Changed 4109 atom styles
> style #!1 ball
Changed 4109 atom styles
> style #!1 stick
Changed 4109 atom styles
> color #1/A: 7, 9, 12 blue
> undo
[Repeated 3 time(s)]
> color #1/A: 7, 9, 12 blue
> save "C:/Users/wij17944/Desktop/20250711_PRKCE/PRKCE ATP/20250715_PRKCE
> G415S and ATP_2.1.cxs"
> select: MG
Unknown command: select: MG
> select #1/C
1 atom, 1 residue, 1 model selected
> color #1/C red
> show #1.1 models
> surface transparency 80
> color #1.1 #ffaa7f33
> color #1.1 #ffaaff33
> color #1.1 #55aaff33
> color #1.1 #55ffff33
> color #1.1 #ffaa0033
> color #1.1 #aa557f33
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> surface transparency 9
> surface transparency 90
> color #1.2 #55aaffff models
> color #1.2 #55557fff models
> color #1.2 #5500ffff models
> color #1.2 blue models
> color #1.2 #0055ffff models
> color #1.2 #029effff models
> color #1.2 #029bfaff models
> color #1.2 white models
> color #1.2 #029bfaff models
> color #1.2 white models
> color #1.2 #029bfaff models
> hide #1.2 models
> show #1.2 models
> ~Zlabel
Unknown command: ~Zlabel
> ~label
> select subtract #1.4
1 atom, 1 residue, 1 model selected
> select add #1
8724 atoms, 4153 bonds, 61 pseudobonds, 271 residues, 17 models selected
> hide #1.1 models
> color #1 #aa557fff
> color #1.2 #ff5500ff models
> color #1.2 #ffaa00ff models
> color #1.2 #55aa7fff models
> select ligand
43 atoms, 45 bonds, 1 residue, 1 model selected
> color sel byhetero
> style sel stick
Changed 43 atom styles
> color sel byhetero
> undo
[Repeated 8 time(s)]
> hide #1.1 models
> select subtract #1
1 model selected
> select subtract #1.4
Nothing selected
> ui tool show "Side View"
> ui mousemode right "move picked models"
> view matrix models #1,1,0,0,-4.1919,0,1,0,1.9491,0,0,1,-2.583
> show #1.6.8 models
> hide #1.6.8 models
> show #1.6.7 models
> hide #1.6.7 models
> show #1.6.10 models
> hide #1.6.10 models
> show #1.6.6 models
> hide #1.6.6 models
> show #1.6.5 models
> hide #1.6.5 models
> show #1.6.3 models
> hide #1.6.3 models
> show #1.6.2 models
> hide #1.6.2 models
> show #1.6.1 models
> hide #1.6.1 models
> show #1.6.4 models
> hide #1.6.4 models
> show #1.6.5 models
> hide #1.6.5 models
> show #1.6.5 models
> hide #1.6.5 models
> show #1.6.6 models
> hide #1.6.6 models
> show #1.6.7 models
> hide #1.6.7 models
> show #1.6.8 models
> hide #1.6.8 models
> show #1.6.9 models
> color #1.6.9 #aa557fff
> color #1.6.9 #944a6fff
> color #1.6.9 #9a4d73ff
> color #1.6.9 #ff7fbfff
> color #1.6.9 white
> color #1.6.9 #c0fcffff
> color #1.6.9 #ff557fff
> show #1.6.1 models
> hide #!1.6 models
> surface kigand
Expected an atoms specifier or a keyword
> surface igand
Expected an atoms specifier or a keyword
> surface ligand
> color #1.5 #aa557fff
> surface ligand transparency 90
> save "C:/Users/wij17944/Desktop/20250711_PRKCE/PRKCE ATP/20250715_PRKCE WT
> and ATP_2.1.cxs"
> ui tool show AllMetal3D/Water3D
> select ligand
43 atoms, 45 bonds, 1 residue, 1 model selected
> ui tool show AllMetal3D/Water3D
Loaded as API: https://simonduerr-allmetal3d.hf.space ✔
> select subtract #1.5
1 model selected
> select subtract #1.4
Nothing selected
> save C:\Users\wij17944/Desktop\image4.png supersample 3
> ui tool show "Add Hydrogens"
> addh #!1
Summary of feedback from adding hydrogens to
fold_2025_07_15_prkce_wt_and_atp_kd_model_0.cif #!1
---
notes | Termini for fold_2025_07_15_prkce_wt_and_atp_kd_model_0.cif (#1) chain A determined from SEQRES records
Chain-initial residues that are actual N termini:
fold_2025_07_15_prkce_wt_and_atp_kd_model_0.cif #!1/A ASN 1
Chain-initial residues that are not actual N termini:
Chain-final residues that are actual C termini:
fold_2025_07_15_prkce_wt_and_atp_kd_model_0.cif #!1/A LYS 255
Chain-final residues that are not actual C termini:
226 hydrogen bonds
0 hydrogens added
> save C:\Users\wij17944/Desktop\image5.png supersample 3
> save C:\Users\wij17944/Desktop\image6.png supersample 3
> view matrix models #1,1,0,0,-7.7492,0,1,0,-2.184,0,0,1,-8.4646
> view matrix models #1,1,0,0,-8.4393,0,1,0,-2.712,0,0,1,-9.4236
> view matrix models #1,1,0,0,-5.0925,0,1,0,-1.8985,0,0,1,-5.9054
> view
[Repeated 1 time(s)]
> save "C:/Users/wij17944/Desktop/20250711_PRKCE/PRKCE ATP/20250715_PRKCE WT
> and ATP_2.2.cxs"
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 322, in process
data = sm.take_snapshot(obj, session, self.state_flags)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\wij17944\AppData\Local\UCSF\ChimeraX\1.9\Python311\site-
packages\chimerax\allmetal3d\tool.py", line 599, in take_snapshot
return {"version": 1, "current text": self.line_edit.text()}
^^^^^^^^^^^^^^
AttributeError: 'AllMetal3D' object has no attribute 'line_edit'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 297, in discovery
self.processed[key] = self.process(obj, parents)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 329, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000001A3742610D0> ->
<chimerax.allmetal3d.tool.AllMetal3D object at 0x000001A3874F3710>
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 1051, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 741, in save
mgr.discovery(self._state_containers)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery
raise ValueError(
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x000001A3742610D0> -> <chimerax.allmetal3d.tool.AllMetal3D object at
0x000001A3874F3710>: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000001A3742610D0> ->
<chimerax.allmetal3d.tool.AllMetal3D object at 0x000001A3874F3710>
ValueError: error processing: 'tools' -> -> : Error while saving session data
for 'tools' -> ->
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery
raise ValueError(
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 322, in process
data = sm.take_snapshot(obj, session, self.state_flags)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\wij17944\AppData\Local\UCSF\ChimeraX\1.9\Python311\site-
packages\chimerax\allmetal3d\tool.py", line 599, in take_snapshot
return {"version": 1, "current text": self.line_edit.text()}
^^^^^^^^^^^^^^
AttributeError: 'AllMetal3D' object has no attribute 'line_edit'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 297, in discovery
self.processed[key] = self.process(obj, parents)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 329, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000001A3742610D0> ->
<chimerax.allmetal3d.tool.AllMetal3D object at 0x000001A3874F3710>
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 127, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 138, in show_save_file_dialog
_dlg.display(session, **kw)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 62, in display
run(session, cmd)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 86, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 101, in provider_save
saver_info.save(session, path, **provider_kw)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core_formats\\__init__.py", line 95, in save
return cxs_save(session, path, **kw)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 1051, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 741, in save
mgr.discovery(self._state_containers)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery
raise ValueError(
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x000001A3742610D0> -> <chimerax.allmetal3d.tool.AllMetal3D object at
0x000001A3874F3710>: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000001A3742610D0> ->
<chimerax.allmetal3d.tool.AllMetal3D object at 0x000001A3874F3710>
ValueError: error processing: 'tools' -> -> : Error while saving session data
for 'tools' -> ->
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery
raise ValueError(
See log for complete Python traceback.
> save "C:/Users/wij17944/Desktop/20250711_PRKCE/PRKCE ATP/20250715_PRKCE WT
> and ATP_2.2.cxs"
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 322, in process
data = sm.take_snapshot(obj, session, self.state_flags)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\wij17944\AppData\Local\UCSF\ChimeraX\1.9\Python311\site-
packages\chimerax\allmetal3d\tool.py", line 599, in take_snapshot
return {"version": 1, "current text": self.line_edit.text()}
^^^^^^^^^^^^^^
AttributeError: 'AllMetal3D' object has no attribute 'line_edit'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 297, in discovery
self.processed[key] = self.process(obj, parents)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 329, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000001A3742610D0> ->
<chimerax.allmetal3d.tool.AllMetal3D object at 0x000001A3874F3710>
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 1051, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 741, in save
mgr.discovery(self._state_containers)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery
raise ValueError(
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x000001A3742610D0> -> <chimerax.allmetal3d.tool.AllMetal3D object at
0x000001A3874F3710>: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000001A3742610D0> ->
<chimerax.allmetal3d.tool.AllMetal3D object at 0x000001A3874F3710>
ValueError: error processing: 'tools' -> -> : Error while saving session data
for 'tools' -> ->
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery
raise ValueError(
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 322, in process
data = sm.take_snapshot(obj, session, self.state_flags)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\wij17944\AppData\Local\UCSF\ChimeraX\1.9\Python311\site-
packages\chimerax\allmetal3d\tool.py", line 599, in take_snapshot
return {"version": 1, "current text": self.line_edit.text()}
^^^^^^^^^^^^^^
AttributeError: 'AllMetal3D' object has no attribute 'line_edit'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 297, in discovery
self.processed[key] = self.process(obj, parents)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 329, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000001A3742610D0> ->
<chimerax.allmetal3d.tool.AllMetal3D object at 0x000001A3874F3710>
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 127, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 138, in show_save_file_dialog
_dlg.display(session, **kw)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\dialog.py", line 62, in display
run(session, cmd)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 86, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\save_command\cmd.py", line 101, in provider_save
saver_info.save(session, path, **provider_kw)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core_formats\\__init__.py", line 95, in save
return cxs_save(session, path, **kw)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 1051, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 741, in save
mgr.discovery(self._state_containers)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery
raise ValueError(
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x000001A3742610D0> -> <chimerax.allmetal3d.tool.AllMetal3D object at
0x000001A3874F3710>: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000001A3742610D0> ->
<chimerax.allmetal3d.tool.AllMetal3D object at 0x000001A3874F3710>
ValueError: error processing: 'tools' -> -> : Error while saving session data
for 'tools' -> ->
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\session.py", line 301, in discovery
raise ValueError(
See log for complete Python traceback.
OpenGL version: 3.3.0 - Build 31.0.101.3302
OpenGL renderer: Intel(R) UHD Graphics 770
OpenGL vendor: Intel
Python: 3.11.4
Locale: de_DE.cp1252
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: windows
Manufacturer: Dell Inc.
Model: OptiPlex Tower 7010
OS: Microsoft Windows 11 Education (Build 22631)
Memory: 16,853,479,424
MaxProcessMemory: 137,438,953,344
CPU: 20 13th Gen Intel(R) Core(TM) i5-13500
OSLanguage: de-DE
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2024.8.30
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AllMetal3D: 0.8
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBImages: 1.2
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
comtypes: 1.4.5
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
fsspec: 2025.5.1
funcparserlib: 2.0.0a0
glfw: 2.8.0
gradio_client: 0.11.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
huggingface-hub: 0.33.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.10.3
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
narwhals: 1.45.0
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 2.2.6
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
plotly: 6.0.1
prompt_toolkit: 3.0.48
psutil: 6.0.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pyKVFinder: 0.8.1
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pywin32: 306
PyYAML: 6.0.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tomlkit: 0.13.2
tornado: 6.4.2
tqdm: 4.67.1
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
websockets: 11.0.3
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
WMI: 1.5.1
Change History (1)
comment:1 by , 3 months ago
| Component: | Unassigned → Third Party |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → AllMetal3D: session save: 'AllMetal3D' object has no attribute 'line_edit' |
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