![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Jul 23, 2024:
- 9:57 PM Ticket #15658 (Crash calculating contour surface) created by
- […]
- 8:01 PM Ticket #15655 (Use/offer official AlphaFold color palette) closed by
- wontfix: This was discussed on the ChimeraX mailing list in May 2024 …
- 6:06 PM Ticket #15654 (Residue 1-letter code reported as X while PDB reports it as K) closed by
- fixed: Add prefetching of all residue templates so one-letter code is known …
- 4:53 PM Ticket #15657 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 3:48 PM ChangeLog edited by
- (diff)
- 10:03 AM 2024-7-25 created by
- 10:02 AM DeveloperMeetings edited by
- (diff)
- 10:00 AM Ticket #15651 (Crash waking Mac from sleep) closed by
- duplicate: Qt 6.6 bug, crashes in _NSViewHierarchyDidChangeBackingProperties …
- 1:20 AM Ticket #15656 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 12:49 AM Ticket #15655 (Use/offer official AlphaFold color palette) created by
- […] 屏幕截图 2024-07-20 233927.png
Jul 22, 2024:
- 8:26 PM Ticket #15522 (Mismatch of crosslink positions when loading structures from PDB-Dev) closed by
- fixed: Fixed. Merged Ben's pull request #44 which switches to using …
- 8:12 PM Ticket #15653 (ChimeraX reports an X while foldseek reports a K in PDB 6uyy chain A ...) closed by
- fixed: Fixed. I made the ChimeraX Foldseek code not report sequence …
- 8:04 PM Ticket #15652 (Error opening a foldseek hit that contains an X residue) closed by
- fixed
- 7:54 PM Ticket #15654 (Residue 1-letter code reported as X while PDB reports it as K) created by
- […]
- 7:49 PM Ticket #15653 (ChimeraX reports an X while foldseek reports a K in PDB 6uyy chain A ...) created by
- […]
- 6:49 PM Ticket #15652 (Error opening a foldseek hit that contains an X residue) created by
- […]
- 3:16 PM Ticket #15651 (Crash waking Mac from sleep) created by
- […]
- 12:39 PM Ticket #15648 (Restore new session in old ChimeraX) closed by
- limitation
- 12:37 PM Ticket #15646 (Crash in garbage collection) closed by
- duplicate
- 12:36 PM Ticket #15645 (Crash in garbage collection) closed by
- duplicate
- 12:35 PM Ticket #15643 (Crash in garbage collection) closed by
- duplicate
- 12:29 PM Ticket #15641 (Save MRC file of half map: could not broadcast input array from shape) closed by
- not a bug: When you use ChimeraX command "volume flip #1" and then try to save …
- 12:13 PM Ticket #15640 (Structure pointer interpreted as base class) closed by
- can't reproduce: Not sure how this could happen -- possibly related to the …
- 11:05 AM Ticket #15650 (ChimeraX 1.7 PyPy package import error: ModuleNotFoundError: No module ...) created by
- After installing the missing tinyarray package (ticket #15649) the …
- 11:02 AM Ticket #15649 (ChimeraX 1.7 PyPi package import error: ModuleNotFoundError: No module ...) created by
- (base) $ python3.11 python3.11 Python 3.11.6 (main, Oct 2 2023, …
- 10:58 AM Ticket #15648 (Restore new session in old ChimeraX) created by
- […]
- 10:53 AM Ticket #15632 (Crash changing Mac display configuration) closed by
- duplicate
- 10:48 AM Ticket #15630 (Crash changing Mac display configuration) closed by
- duplicate: Qt 6.6 bug crashing _NSViewHierarchyDidChangeBackingProperties in …
- 10:46 AM Ticket #15628 (Crash changing Mac display configuration) closed by
- duplicate: This ChimeraX crash is in the Qt window toolkit and we have most often …
- 10:40 AM Ticket #15647 (Improve PyPi web page ChimeraX description) created by
- The ChimeraX PyPi package web page description seems to be using …
- 10:14 AM Ticket #15637 (GL.glDrawElementsInstanced: Windows Error) closed by
- can't reproduce: Possibly a Windows graphic driver problem since the traceback was in …
- 9:50 AM Ticket #15636 (Crash waking Mac from sleep) closed by
- duplicate: Crash in _NSViewHierarchyDidChangeBackingProperties(). Possibly …
- 9:49 AM Ticket #15635 (Crash waking Mac from sleep) closed by
- duplicate: Same crash, same reporter, as #15634
- 9:46 AM Ticket #15634 (Crash waking Mac from sleep) closed by
- duplicate: This ChimeraX crash is in the Qt window toolkit and we have most often …
Jul 21, 2024:
Jul 20, 2024:
- 6:23 PM Ticket #15645 (Crash in garbage collection) created by
- […]
- 5:04 PM Ticket #15644 (Bundle builder should tell cython correct deployment target by setting ...) created by
- 10:52 AM Ticket #15643 (Crash in garbage collection) created by
- […]
- 1:47 AM Ticket #15642 (MD Viewer: 'close' during playback produce traceback) created by
- […]
Jul 19, 2024:
- 3:21 PM Ticket #15641 (Save MRC file of half map: could not broadcast input array from shape) created by
- […]
- 2:55 PM Ticket #15640 (Structure pointer interpreted as base class) created by
- […]
- 2:39 PM Ticket #15639 (RFE: depth testing for volumes) created by
- Currently it looks like opaque models are always drawn over volumes, …
- 10:22 AM Ticket #15638 (RFE: Port the Chimera lighting GUI) created by
- We're closer than ever to releasing our new raycasting rendering mode. …
- 9:37 AM Ticket #15637 (GL.glDrawElementsInstanced: Windows Error) created by
- […]
- 8:39 AM Ticket #15636 (Crash waking Mac from sleep) created by
- […]
- 8:21 AM Ticket #15635 (Crash waking Mac from sleep) created by
- […]
- 6:34 AM Ticket #15634 (Crash waking Mac from sleep) created by
- […]
Jul 18, 2024:
- 3:53 PM Ticket #15631 (Crash at startup) closed by
- worksforme: Please update to ChimeraX 1.8 and let us if it happens again. Thank you.
- 2:59 PM Ticket #15577 (non-printable surface missing coulombic coloring) closed by
- can't reproduce: Okay! :-)
- 2:58 PM Ticket #15633 (Restore new session in old ChimeraX) closed by
- limitation
- 2:52 PM Ticket #15629 (ArtiaX/pandas vs. numpy) closed by
- limitation: Hi Robin, I think you need to upgrade both ChimeraX and ArtiaX to …
- 1:34 PM NIAID2024 edited by
- (diff)
- 12:50 PM Ticket #15633 (Restore new session in old ChimeraX) created by
- […]
- 10:28 AM Ticket #15624 (ui view fourup: ZeroDivisionError) closed by
- duplicate: Duplicate of https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/15343 …
- 9:55 AM Ticket #15627 (MemoryError opening mmCIF files) closed by
- duplicate
- 9:54 AM Ticket #15626 (MemoryError opening mmCIF files) closed by
- duplicate: Hi Raj, Thanks for reporting this problem. It has been fixed in …
- 6:50 AM Ticket #15632 (Crash changing Mac display configuration) created by
- […]
- 5:34 AM Ticket #15631 (Crash at startup) created by
- […]
- 2:11 AM Ticket #15630 (Crash changing Mac display configuration) created by
- […]
- 1:24 AM Ticket #15629 (ArtiaX/pandas vs. numpy) created by
- […]
- 12:27 AM Ticket #15628 (Crash changing Mac display configuration) created by
- […]
Jul 17, 2024:
- 11:14 PM Ticket #15627 (MemoryError opening mmCIF files) created by
- […]
- 11:14 PM Ticket #15626 (MemoryError opening mmCIF files) created by
- […]
- 1:32 PM Ticket #15625 (Dark mode changes broke command-line error reporting) created by
- […]
- 12:38 PM Ticket #15624 (ui view fourup: ZeroDivisionError) created by
- […]
- 10:42 AM Ticket #15620 (Wrl outputs have bleeding color) closed by
- nonchimerax: Glad you have a lead on the problem. Let me know if other issues …
- 8:47 AM Ticket #15623 (Crash processing atom spec) closed by
- duplicate
- 3:57 AM Ticket #15623 (Crash processing atom spec) created by
- […]
Jul 16, 2024:
- 10:34 PM Ticket #15615 (Crash changing display configuration on Mac) closed by
- duplicate: ChimeraX crashed unplugging or plugging in an external display. This …
- 10:30 PM Ticket #15614 (Crash changing display configuration on Mac) closed by
- duplicate: Mac Qt 6.6 crash probably from unplugging or plugging in external display.
- 5:01 PM Ticket #15621 (Crash in garbage collection) closed by
- duplicate
- 4:56 PM Ticket #15619 (Crash processing atom spec) closed by
- duplicate
- 4:56 PM Ticket #15618 (Crash processing atom spec) closed by
- duplicate
- 4:55 PM Ticket #15617 ('pwd' failure when working directory removed) closed by
- duplicate
- 4:44 PM Ticket #15622 (MatchMaker: assign RMSDs without opening sequence viewers) created by
- Either with 'rmsd' boolean keyword or 'rmsd' arg-less keyword.
- 2:29 PM Ticket #15616 ('pwd' failure when working directory removed) closed by
- fixed
- 9:17 AM Ticket #15621 (Crash in garbage collection) created by
- […]
- 7:51 AM Ticket #15620 (Wrl outputs have bleeding color) created by
- […] [[Image(...)]] [[Image(...)]]
- 7:39 AM Ticket #15619 (Crash processing atom spec) created by
- […]
- 7:30 AM Ticket #15618 (Crash processing atom spec) created by
- […]
- 4:17 AM Ticket #15617 ('pwd' failure when working directory removed) created by
- […]
- 4:15 AM Ticket #15616 ('pwd' failure when working directory removed) created by
- […]
- 2:29 AM Ticket #15615 (Crash changing display configuration on Mac) created by
- […]
Jul 15, 2024:
- 4:17 PM Ticket #15614 (Crash changing display configuration on Mac) created by
- […]
- 3:30 PM Dev2024-7-15 edited by
- (diff)
- 11:27 AM Ticket #15604 (ItemTable.scroll_to(item) does not scroll the table) closed by
- fixed: scroll_to() wasn't accounting for table sorting fix: …
- 11:05 AM Ticket #15606 (Memory shortage repainting windows) closed by
- can't reproduce: ChimeraX crashed in Apple's Intel graphics driver. It might have been …
- 10:49 AM Ticket #15613 (Crash in garbage collection) closed by
- duplicate: Hi Guilherme, Thanks for reporting this problem. It has been fixed …
- 10:31 AM Ticket #15609 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate: Hi Tianyi, Thanks for reporting this problem. It is a bug with the Qt …
- 10:27 AM Ticket #15608 (Histogram widget: operands could not be broadcast together with shapes) closed by
- duplicate
- 10:26 AM Ticket #15607 (Histogram widget: operands could not be broadcast together with shapes) closed by
- duplicate
- 10:19 AM Ticket #15605 (MemoryError opening mmCIF files) closed by
- duplicate
- 10:18 AM Ticket #15613 (Crash in garbage collection) created by
- […]
- 10:18 AM Ticket #15603 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate: Hi Wiliam, Thanks for reporting this problem. It is a bug with the …
- 10:15 AM Ticket #15602 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 8:39 AM Ticket #15612 (PAE surf output problem) created by
- […] [[Image(...)]]
- 8:12 AM Ticket #15611 (Missing outputs) created by
- […] expected_ChimeraX_annotated.xlsx
- 2:50 AM Ticket #15610 (glTexImage3D: out of memory) created by
- […]
Jul 14, 2024:
- 11:22 PM Ticket #15609 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 3:59 PM Ticket #15608 (Histogram widget: operands could not be broadcast together with shapes) created by
- […]
- 3:59 PM Ticket #15607 (Histogram widget: operands could not be broadcast together with shapes) created by
- […]
- 12:06 PM Ticket #15606 (Memory shortage repainting windows) created by
- […] error.txt
- 5:16 AM Ticket #15605 (MemoryError opening mmCIF files) created by
- […]
Jul 13, 2024:
- 10:49 PM Ticket #15604 (ItemTable.scroll_to(item) does not scroll the table) created by
- […]
- 6:43 AM Ticket #15603 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Jul 12, 2024:
- 11:21 AM Ticket #15602 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 11:18 AM Ticket #15599 (Render by Attribute: 'MarkedHistogram' object has no attribute '_min_val') closed by
- fixed
- 9:42 AM Ticket #15601 (Non-ASCII PDB file) closed by
- can't reproduce: Gave a good error the first time. Seems to be SQLite output!
- 9:34 AM Ticket #15598 (MemoryError opening mmCIF files) closed by
- duplicate
- 9:33 AM Ticket #15597 (Crash in QDialog.exec()) closed by
- can't reproduce
- 9:30 AM Ticket #15601 (Non-ASCII PDB file) created by
- […]
- 5:56 AM Ticket #15600 (RFE: fetch map for session if appropriate) created by
- […]
- 5:46 AM Ticket #15599 (Render by Attribute: 'MarkedHistogram' object has no attribute '_min_val') created by
- […]
- 5:29 AM Ticket #15598 (MemoryError opening mmCIF files) created by
- […]
Jul 11, 2024:
- 4:50 PM Ticket #15597 (Crash in QDialog.exec()) created by
- […]
- 3:14 PM Ticket #15596 (Toolshed can't find ArtiaX bundle) created by
- […]
- 1:56 PM 2024-7-11 edited by
- (diff)
- 1:53 PM 2024-7-11 edited by
- (diff)
- 10:58 AM Ticket #15595 (Generic chooser widget: argument of type 'NoneType' is not iterable) closed by
- fixed: Fix: …
- 10:39 AM Ticket #15593 (Crash unplugging Mac external monitor) closed by
- duplicate: Thanks for the report. Unfortunately the Qt window toolkit version …
- 10:33 AM Ticket #15590 (Crash changing Mac display configuration) closed by
- duplicate: Plugging in or unplugging a display on Mac …
- 10:13 AM Ticket #15594 (MemoryError opening mmCIF files) closed by
- duplicate
Jul 10, 2024:
- 10:15 PM Ticket #15595 (Generic chooser widget: argument of type 'NoneType' is not iterable) created by
- […]
- 7:32 PM Ticket #15594 (MemoryError opening mmCIF files) created by
- […]
- 4:15 PM Ticket #15592 (Save mmCIF files with unix line endings instead of DOS line endings) closed by
- fixed: Agreed. I found a commit, ceebbe884ecca01a634193df961fee0a58584aba, …
- 2:09 PM Ticket #15593 (Crash unplugging Mac external monitor) created by
- […]
- 1:01 PM Ticket #15592 (Save mmCIF files with unix line endings instead of DOS line endings) created by
- […]
- 12:02 PM Ticket #15591 (Add Foldseek structure similarity search) created by
- Martin Steinegger asked if we could add a Foldseek search tool to …
- 11:42 AM Ticket #15587 (Crash either moving window or changing display) closed by
- can't reproduce: The [NSWindow _windowMovedToRect:dueToMoveEvent] entry in the stack …
- 11:28 AM Dev2024-7-15 edited by
- (diff)
- 11:15 AM Ticket #15590 (Crash changing Mac display configuration) created by
- […]
- 9:18 AM Ticket #15589 (Color Actions: can only concatenate str (not "NoneType") to str) closed by
- duplicate
- 9:02 AM Ticket #15586 (Crash in garbage collection) closed by
- duplicate
- 6:37 AM Ticket #15589 (Color Actions: can only concatenate str (not "NoneType") to str) created by
- […]
- 3:00 AM Ticket #15588 (Maestro: KeyError: 'i_m_residue_number') created by
- […]
Jul 9, 2024:
- 3:14 PM Ticket #15587 (Crash either moving window or changing display) created by
- […]
- 2:46 PM Ticket #15586 (Crash in garbage collection) created by
- […]
- 11:50 AM Ticket #15585 (Select..Contacts not completely working) closed by
- fixed: Fix: …
- 10:38 AM Dev2024-7-15 created by
- 10:37 AM 2024-6-27 edited by
- (diff)
- 10:37 AM 2024-7-11 created by
- 10:36 AM DeveloperMeetings edited by
- (diff)
- 9:01 AM Ticket #15583 (Crash in garbage collection) closed by
- duplicate
- 9:00 AM Ticket #15582 (Save command history: No space left on device) closed by
- nonchimerax
- 8:59 AM Ticket #15581 (Restore new session in old ChimeraX) closed by
- limitation
- 8:13 AM Ticket #15585 (Select..Contacts not completely working) created by
- […]
- 5:53 AM Ticket #15584 (Permission denied writing setting/history files) created by
- […]
- 2:45 AM Ticket #15583 (Crash in garbage collection) created by
- […]
- 2:35 AM Ticket #15582 (Save command history: No space left on device) created by
- […]
- 2:02 AM Ticket #15581 (Restore new session in old ChimeraX) created by
- […]
Jul 8, 2024:
- 6:28 PM Ticket #15575 (fitmap: self.data is None fitting atomic model into simulated map) closed by
- wontfix: While it would be desirable to fix this, the case of fitting an atomic …
- 6:16 PM Ticket #15579 (Error opening foldseek results with AlphaFold fragment structure) closed by
- fixed: Fixed. Made parsing of alphafold hit names handle fragment specifier. …
- 5:12 PM Ticket #15578 (AlphaFold JSON: Expecting ',' delimiter) closed by
- nonchimerax: User tried to open a file called alphafold_database.json that did not …
- 4:40 PM Ticket #15567 (MatchMaker: no 'structure' attr in bring-models filter) closed by
- fixed: Fix: …
- 4:13 PM Dev2024-7-8 edited by
- (diff)
- 3:06 PM Dev2024-7-8 edited by
- (diff)
- 3:01 PM Dev2024-7-8 edited by
- (diff)
- 2:43 PM Ticket #15580 ('close' with segmentation tool opened tries to reset mouse bindings ...) created by
- 2:38 PM Ticket #15570 (Context menu: self.bundle_info is None) closed by
- fixed: Hi Kelvin, Thanks for reporting this problem. We think it was fixed …
- 2:02 PM Ticket #15579 (Error opening foldseek results with AlphaFold fragment structure) created by
- […]
- 1:17 PM Ticket #15574 (Crash waking Mac up from sleep in displayConfigFinalizedProc, ATI graphics) closed by
- duplicate: Crash plugging in or unplugging an external display. Work-around code …
- 1:17 PM Ticket #15578 (AlphaFold JSON: Expecting ',' delimiter) created by
- […]
- 1:13 PM Ticket #15572 (libopenvr incompatible) closed by
- limitation: VR is not supported on Mac computers. I've improved the code so it …
- 1:03 PM Ticket #15569 (lookingglass errors) closed by
- can't reproduce: The error message says it failed to find a LookingGlass display. The …
- 1:00 PM Ticket #15577 (non-printable surface missing coulombic coloring) created by
- […] 8vel-mol-surf-lowres-coulombic.glb …
- 12:54 PM Ticket #15566 (Error in custom "lattice" command) closed by
- fixed
- 12:54 PM Ticket #15566 (Error in custom "lattice" command) reopened by
- 12:52 PM Ticket #15576 (Crash closing lung data) created by
- […]
- 12:49 PM Ticket #15564 (Fitmap: Tried to get the position of deleted drawing) closed by
- fixed: Fixed. Fit search code that prevented trying to position a deleted …
- 11:01 AM Ticket #15575 (fitmap: self.data is None fitting atomic model into simulated map) created by
- […]
- 10:56 AM Ticket #15571 (PermissionError saving settings on Windows) closed by
- can't reproduce: Hi Prakash, Thanks for reporting this problems. There have been some …
- 10:48 AM Ticket #15568 (MemoryError opening mmCIF files) closed by
- duplicate
- 10:44 AM Ticket #15566 (Error in custom "lattice" command) closed by
- can't reproduce: Maybe for light-sheet microscopy?
- 10:37 AM Ticket #15565 (Crash in garbage collection) closed by
- duplicate
- 10:32 AM Ticket #15563 (MemoryError opening mmCIF files) closed by
- duplicate: Hi Baturay, Thanks for reporting this problem. It has been fixed in …
- 10:26 AM Ticket #15574 (Crash waking Mac up from sleep in displayConfigFinalizedProc, ATI graphics) created by
- […]
Jul 7, 2024:
- 10:47 PM Ticket #15573 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 10:47 PM Ticket #15572 (libopenvr incompatible) created by
- […]
- 10:13 PM Ticket #15571 (PermissionError saving settings on Windows) created by
- […]
- 9:50 PM Ticket #15570 (Context menu: self.bundle_info is None) created by
- […]
- 1:03 PM Ticket #15569 (lookingglass errors) created by
- […]
- 10:46 AM Ticket #15568 (MemoryError opening mmCIF files) created by
- […]
- 3:01 AM Ticket #15567 (MatchMaker: no 'structure' attr in bring-models filter) created by
- […]
- 2:36 AM Ticket #15566 (Error in custom "lattice" command) created by
- […]
Jul 6, 2024:
- 11:06 AM Ticket #15565 (Crash in garbage collection) created by
- […]
- 10:13 AM Ticket #15564 (Fitmap: Tried to get the position of deleted drawing) created by
- […]
- 5:01 AM Ticket #15563 (MemoryError opening mmCIF files) created by
- […]
Jul 5, 2024:
- 4:56 PM Ticket #6988 (RFE: have warnings reveal log if tabbed) closed by
- fixed: Fix: …
- 3:54 PM Ticket #15551 (problems with seq-structure association dialog) closed by
- fixed: The list widget was comparing the old selected item text with the new …
- 1:30 PM Ticket #15562 (Crash in garbage collection) closed by
- duplicate
- 1:23 PM Ticket #15560 (Crash in event loop) closed by
- can't reproduce
- 1:02 PM Ticket #15562 (Crash in garbage collection) created by
- […]
- 12:33 PM Ticket #15561 (Crash in event loop) created by
- […]
- 11:55 AM Ticket #15560 (Crash in event loop) created by
- […]
- 11:55 AM Ticket #15552 (surface shown for hidden model when coulombic used in trajectory playback) closed by
- fixed: Making coulombic not ask for H-bond-guided hydrogens fixed both …
- 9:34 AM Ticket #15558 (Crash in check_for_changes during running simulation) closed by
- can't reproduce
- 9:29 AM Ticket #15556 (Crash in garbage collection) closed by
- duplicate
- 9:25 AM Ticket #15555 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 9:22 AM Ticket #15554 (Crash showing open-file dialog) closed by
- can't reproduce
- 9:12 AM Ticket #15550 (MemoryError opening mmCIF files) closed by
- duplicate
- 9:10 AM Ticket #15549 (Crash in garbage collection) closed by
- duplicate: Hi, Thanks for reporting this problem. It has been fixed in the 1.8 …
- 7:57 AM Ticket #15559 (Crash opening mmCIF) created by
- […]
- 7:04 AM Ticket #15558 (Crash in check_for_changes during running simulation) created by
- […]
- 6:09 AM Ticket #15557 (mmcif.find_template_residue() fails on Mac for template names ...) created by
- Reported by Yang Lee, just confirmed by me in ChimeraX 1.8. In …
- 5:53 AM Ticket #15556 (Crash in garbage collection) created by
- […]
- 4:43 AM Ticket #15555 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 2:56 AM Ticket #15554 (Crash showing open-file dialog) created by
- […]
Jul 4, 2024:
- 9:38 PM Ticket #15553 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 4:37 PM Ticket #15552 (surface shown for hidden model when coulombic used in trajectory playback) created by
- Maybe it's two problems. Test case setup: open 2gbp open 2fw0 mm …
- 1:43 PM Ticket #15551 (problems with seq-structure association dialog) created by
- […]
- 7:17 AM Ticket #15550 (MemoryError opening mmCIF files) created by
- […]
Jul 3, 2024:
- 8:25 PM Ticket #15549 (Crash in garbage collection) created by
- […]
- 1:22 PM Ticket #15444 (More alphafold updates) closed by
- fixed: Added the printable versions of the outputs to the pipeline script as …
- 10:06 AM Ticket #15543 (Intel Mac image save artifacts with silhouette edges) closed by
- nonchimerax: Those artifacts are a defect in Apple's Intel graphics driver. It is …
- 9:40 AM Ticket #15547 (MemoryError opening mmCIF files) closed by
- duplicate
- 9:39 AM Ticket #15546 (Color Actions: can only concatenate str (not "NoneType") to str) closed by
- duplicate: Was fixed 8 days later
- 9:36 AM Ticket #15545 (Crash in event loop) closed by
- can't reproduce
- 4:03 AM Ticket #15548 (Crash in python_instances_of_class) created by
- […]
- 1:16 AM Ticket #15547 (MemoryError opening mmCIF files) created by
- […]
- 12:01 AM Ticket #15546 (Color Actions: can only concatenate str (not "NoneType") to str) created by
- […]
Jul 2, 2024:
- 10:21 PM Ticket #15545 (Crash in event loop) created by
- […]
- 10:00 PM Ticket #15544 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 12:40 PM DeveloperMeetings edited by
- (diff)
- 12:39 PM Dev2024-7-8 edited by
- (diff)
- 12:39 PM Dev2024-7-8 created by
- 12:37 PM Dev2024-7-1 edited by
- (diff)
- 12:37 PM DeveloperMeetings edited by
- (diff)
- 12:34 PM Ticket #15543 (Intel Mac image save artifacts with silhouette edges) created by
- […] heme_coord_model.png
- 12:33 PM Ticket #15542 (Qt could not get OpenGL context, Linux, ancient graphics card) closed by
- nonchimerax: Qt could not get an opengl context for the user interface. Graphics …
- 9:05 AM Ticket #15541 (Crash in python_instances_of_class) closed by
- can't reproduce
- 8:55 AM Ticket #15540 (Crash in garbage collection) closed by
- duplicate: Hi Sana, Thanks for reporting this problem. This was fixed in the …
- 8:53 AM Ticket #15539 (Crash in garbage collection) closed by
- duplicate
- 8:51 AM Ticket #15537 (MemoryError opening mmCIF files) closed by
- duplicate
- 8:18 AM Ticket #15542 (Qt could not get OpenGL context, Linux, ancient graphics card) created by
- […]
- 5:21 AM Ticket #15541 (Crash in python_instances_of_class) created by
- […]
- 4:33 AM Ticket #15540 (Crash in garbage collection) created by
- […]
Jul 1, 2024:
- 11:33 PM Ticket #15539 (Crash in garbage collection) created by
- […]
- 4:28 PM Ticket #15538 (Install/uninstall issue) created by
- […]
- 1:34 PM Ticket #15537 (MemoryError opening mmCIF files) created by
- […]
- 12:28 PM Ticket #14934 (Daily build "developer cannot be verified") closed by
- fixed: Still having problems getting AmberTools to run, but it's not causing …
- 12:22 PM Ticket #15523 (Crash in event loop) closed by
- can't reproduce: Thanks for the info. Perhaps your graphics card got into a bad state …
- 12:15 PM Ticket #15536 (ui view fourup: division by zero) created by
- […]
- 11:32 AM Ticket #15535 (Crash in Linux Mesa NVD7 graphics driver) closed by
- duplicate: Same graphics driver crash as #15531 and same reporter.
- 11:29 AM Ticket #15532 (Unclipped submodels not selectable) closed by
- fixed: Mostly fixed. Picking atoms in a submodel that had clipping disabled …
- 11:21 AM Ticket #15535 (Crash in Linux Mesa NVD7 graphics driver) created by
- […]
- 11:20 AM Ticket #15534 (Crash on exit) closed by
- can't reproduce
- 11:19 AM Ticket #15531 (Crash in Linux Mesa NVD7 graphics driver) closed by
- nonchimerax: Crashed in graphics driver showing a couple atomic models OpenGL …
- 11:18 AM Ticket #15534 (Crash on exit) created by
- […]
- 11:17 AM Ticket #15533 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 11:14 AM Ticket #15532 (Unclipped submodels not selectable) created by
- […]
- 11:12 AM Ticket #15531 (Crash in Linux Mesa NVD7 graphics driver) created by
- […]
- 11:10 AM Ticket #15530 (Crash painting newly exposed widget(?)) closed by
- can't reproduce
- 11:10 AM Ticket #15527 (glDrawBuffer: invalid operation) closed by
- duplicate: This is a somewhat common Linux problem glDrawBuffer(GL_BACK) fails. …
- 11:03 AM Ticket #15528 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 10:54 AM Ticket #15525 (PermissionError matching PAE file) closed by
- nonchimerax: Appears the user denied access to the Desktop for ChimeraX so it …
- 10:20 AM Ticket #15521 (Crash in Mac display reconfiguration) closed by
- duplicate: Duplicate of #15413. This ticket is the same as a crash I had on my …
- 9:51 AM Ticket #15520 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 9:50 AM Ticket #15519 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 9:47 AM Ticket #15526 (chimerax.ui.ask failure with Qt 6.7) closed by
- duplicate: Duplicate of #15498
- 9:43 AM ChangeLog edited by
- (diff)
- 9:22 AM Ticket #15530 (Crash painting newly exposed widget(?)) created by
- […]
- 8:47 AM Ticket #15529 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
Jun 30, 2024:
Jun 29, 2024:
- 9:28 PM Ticket #15527 (glDrawBuffer: invalid operation) created by
- […]
- 1:49 PM Ticket #15526 (chimerax.ui.ask failure with Qt 6.7) created by
- {{{Traceback (most recent call last): File …
Jun 28, 2024:
- 6:36 PM Ticket #15525 (PermissionError matching PAE file) created by
- […]
- 4:41 PM Ticket #15524 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 12:31 PM Ticket #15523 (Crash in event loop) created by
- […]
- 4:02 AM Ticket #15522 (Mismatch of crosslink positions when loading structures from PDB-Dev) created by
- […]
- 2:27 AM Ticket #15521 (Crash in Mac display reconfiguration) created by
- […]
- 2:20 AM Ticket #15520 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 12:52 AM Ticket #15519 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Jun 27, 2024:
- 5:58 PM Ticket #15428 (problem with viruses bychain outputs in flows) closed by
- fixed: The updated bundle is on the toolshed, and the pipeline script has …
- 5:34 PM Ticket #15517 (Crash changing Mac display configuration) closed by
- can't reproduce: Did this ChimeraX crash happen after you unplugged an external display …
- 5:26 PM Ticket #15514 (Collection slices incorrectly updated) closed by
- fixed: Fixed. Made slicing collections copy the numpy array of C++ pointers.
- 5:22 PM Ticket #15513 (Graphics crash, macOS 10.15.7, NVIDIA GeForce GT 755M) closed by
- nonchimerax: Apple Nvidia graphics driver crash.
- 2:49 PM Ticket #15515 (Crash adding hydrogens for Dock Prep) closed by
- can't reproduce: The log doesn't show anything being opened before Dock Prep, yet Dock …
- 2:42 PM Ticket #15512 (Crash showing save dialog) closed by
- can't reproduce
- 2:39 PM Ticket #15511 (Crash in garbage collection) closed by
- duplicate
- 2:38 PM Ticket #15510 (Crash in garbage collection) closed by
- duplicate
- 2:36 PM Ticket #15509 (Test) closed by
- not a bug
- 2:34 PM Ticket #15508 (Crash in garbage collection) closed by
- duplicate: Duplicate of #15507
- 2:31 PM Ticket #15518 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 2:29 PM Ticket #15517 (Crash changing Mac display configuration) created by
- […]
- 2:29 PM Ticket #15516 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 2:28 PM Ticket #15515 (Crash adding hydrogens for Dock Prep) created by
- […]
- 2:27 PM Ticket #15514 (Collection slices incorrectly updated) created by
- […]
- 2:27 PM Ticket #15513 (Graphics crash, macOS 10.15.7, NVIDIA GeForce GT 755M) created by
- […]
- 2:26 PM Ticket #15512 (Crash showing save dialog) created by
- […]
- 2:08 PM Ticket #15511 (Crash in garbage collection) created by
- […]
- 2:01 PM Ticket #15505 (Attempt to retrieve context when no valid context) closed by
- can't reproduce: ChimeraX 1.6 on startup on Linux calls make current on the Qt …
- 1:48 PM Ticket #15510 (Crash in garbage collection) created by
- […]
- 1:14 PM Ticket #15509 (Test) created by
- […]
- 1:11 PM Ticket #5407 (Display HTML within table) closed by
- fixed: Table columns initialized with "is_html=True" will support HTML markup …
Jun 26, 2024:
- 6:23 PM Ticket #15508 (Crash in garbage collection) created by
- […]
- 6:12 PM Ticket #15507 (Crash in garbage collection) closed by
- duplicate: Hi Sana, Thanks for reporting this problem. I would recommend …
- 6:09 PM Ticket #15506 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 6:07 PM Ticket #15507 (Crash in garbage collection) created by
- […]
- 3:58 PM Ticket #15506 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 1:52 PM Ticket #15498 (chimerax.ui.ask failure with Qt 6.7) closed by
- fixed: Fix available in next daily build. Fix: …
- 12:37 PM Ticket #15505 (Attempt to retrieve context when no valid context) created by
- […]
- 11:38 AM Ticket #15504 (Stack overflow processing atom spec) created by
- […]
- 11:25 AM Ticket #15503 (Crash in garbage collection) closed by
- duplicate
- 11:18 AM Ticket #15500 (Open PDB file: invalid map<K, T> key) closed by
- wontfix: Seems like a functional duplicate of #15309; probably terrible …
- 11:07 AM Ticket #15499 (Crash in toolbar _build_tabs) closed by
- can't reproduce
- 10:35 AM Ticket #15503 (Crash in garbage collection) created by
- […]
- 6:57 AM Ticket #15502 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 3:12 AM Ticket #15501 (Crash starting ISOLDE) created by
- […]
- 1:09 AM Ticket #15500 (Open PDB file: invalid map<K, T> key) created by
- […]
Jun 25, 2024:
- 8:21 PM Ticket #15499 (Crash in toolbar _build_tabs) created by
- […]
- 5:43 PM Ticket #15497 ("alphafold pae true" does not guard against starting tool in nogui mode) closed by
- fixed: Fixed in daily build dated June 26, 2024 or later. I made the …
- 4:23 PM Ticket #10156 (Various DCD errors) closed by
- wontfix: After failing to save a DCD, user tries to open that selfsame failed DCD.
- 3:18 PM Ticket #15498 (chimerax.ui.ask failure with Qt 6.7) created by
- […]
- 2:40 PM Ticket #15496 (Crash in garbage collection) closed by
- duplicate
- 2:29 PM Ticket #15497 ("alphafold pae true" does not guard against starting tool in nogui mode) created by
- […] ChimeraX_window_issue.txt
- 12:38 PM Ticket #15496 (Crash in garbage collection) created by
- […]
- 11:36 AM Ticket #15491 (The version of 'requests' we depend on has been yanked due to a CVE) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/7cd4620b5d01448d179ca5a4dfae5c …
- 11:15 AM Ticket #15495 (Crash changing Mac display configuration, Intel/AMD graphics) closed by
- duplicate: Qt 6.6 bug, crash unplugging or plugging in external display. I put …
- 11:12 AM Ticket #15494 (glGetFramebufferAttachmentParameteriv: illegal enumerant) closed by
- nonchimerax: ChimeraX cannot run because your computer graphics driver is …
- 10:55 AM Ticket #15493 (Crash in garbage collection) closed by
- duplicate
- 10:45 AM Dev2024-7-1 created by
- 10:44 AM 2024-6-27 created by
- 10:43 AM 2024-6-20 created by
- 10:41 AM 2024-6-13 edited by
- (diff)
- 10:34 AM DeveloperMeetings edited by
- (diff)
- 9:38 AM Ticket #15495 (Crash changing Mac display configuration, Intel/AMD graphics) created by
- […]
- 4:38 AM Ticket #15494 (glGetFramebufferAttachmentParameteriv: illegal enumerant) created by
- […]
Jun 24, 2024:
- 9:41 PM Ticket #15493 (Crash in garbage collection) created by
- […]
- 4:13 PM Dev2024-6-24 edited by
- (diff)
- 3:24 PM Dev2024-6-24 edited by
- (diff)
- 3:00 PM Dev2024-6-17 edited by
- (diff)
- 2:59 PM Dev2024-6-24 created by
- 2:58 PM DeveloperMeetings edited by
- (diff)
- 2:15 PM Ticket #15492 (Duplicate bundles in cache) created by
- I built ChimeraX from scratch then tried to install the graphics …
- 1:39 PM Ticket #15435 (bits_allocated is None) closed by
- can't reproduce: I googled CT STAMOULI IRINI in case it was a public dataset, but with …
- 1:35 PM Ticket #15445 (Session save: No bundle information for chimerax.core.tasks.Tasks) closed by
- duplicate: Caused by the same pkg_utils bug as #15472
- 1:23 PM Ticket #15491 (The version of 'requests' we depend on has been yanked due to a CVE) created by
- In the build output WARNING: The candidate selected for download or …
- 12:25 PM Ticket #15484 (Crash no Python or C stack traces, after running AlphaFold prediction) closed by
- can't reproduce
- 12:20 PM Ticket #15480 (Problem with "volume orthoplanes": could not broadcast input array ...) closed by
- duplicate: The user tried to show orthoplanes outside the bounds of the volume in …
- 12:08 PM Ticket #15477 (Crash in Qt event loop in io_connect_method(), Intel Mac ChimeraX ...) closed by
- can't reproduce: It isn't clear why ChimeraX crashed. It was in the Qt window toolkit …
- 12:04 PM Ticket #15490 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 11:52 AM Ticket #15486 (Changes for AlphaFold3 PAE broke MOLEonline json reader) closed by
- not a bug: I've added to the error message that appears when you try to open a …
- 11:33 AM Ticket #15489 (Editable installs broken on latest revision) created by
- I'm getting this error when I try to install a package in editable …
- 11:14 AM Ticket #15488 (how can I delete a) closed by
- not a bug: Hi, If you select the hydrogen bond you want to hide (control-click …
- 10:48 AM Ticket #15485 (Unknown crash) closed by
- can't reproduce
- 10:45 AM Ticket #15483 (Graphics crash, macOS 11.6.2, Intel Iris Plus Graphics) closed by
- can't reproduce
- 10:44 AM Ticket #15482 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce
- 10:43 AM Ticket #15481 (Cannot save session file in daily build) closed by
- duplicate
- 10:03 AM Ticket #15478 (Crash in garbage collection) closed by
- duplicate
- 9:16 AM Ticket #15488 (how can I delete a) created by
- […]
- 9:02 AM Ticket #15487 (ArtiaX 'superqt' dependency not installed) created by
- […]
- 8:13 AM Ticket #15486 (Changes for AlphaFold3 PAE broke MOLEonline json reader) created by
- […]
- 7:50 AM Ticket #15485 (Unknown crash) created by
- […]
- 7:05 AM Ticket #15484 (Crash no Python or C stack traces, after running AlphaFold prediction) created by
- […]
- 5:40 AM Ticket #15483 (Graphics crash, macOS 11.6.2, Intel Iris Plus Graphics) created by
- […]
- 1:23 AM Ticket #15482 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
Jun 23, 2024:
- 10:17 PM Ticket #15481 (Cannot save session file in daily build) created by
- […]
- 10:08 PM Ticket #15480 (Problem with "volume orthoplanes": could not broadcast input array ...) created by
- […]
- 7:38 PM Ticket #15479 (Could not save clashes to non-ASCII file path) created by
- […]
- 7:27 PM Ticket #15478 (Crash in garbage collection) created by
- […]
- 5:02 AM Ticket #15477 (Crash in Qt event loop in io_connect_method(), Intel Mac ChimeraX ...) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
