![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 15 months ago
Last modified 15 months ago
#15657 assigned defect
Qt fatal error: Failed to initialize graphics backend for OpenGL
| Reported by: | Owned by: | Greg Couch | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.3.1-x86_64-i386-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Qt fatal error: Failed to initialize graphics backend for OpenGL.
Fatal Python error: Aborted
Current thread 0x0000000202915240 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 861 in rapid_access_shown
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 198 in build
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 722 in init
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util (total: 45)
{"app_name":"ChimeraX","timestamp":"2024-07-24 08:49:31.00 +0900","app_version":"1.7.1","slice_uuid":"194a3167-3db5-3029-8d22-1d742b826bb9","build_version":"1.7.1.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 14.3.1 (23D60)","roots_installed":0,"name":"ChimeraX","incident_id":"608E4A82-2219-4B45-B7EC-3AC6B51EC74E"}
{
"uptime" : 1300000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro17,1",
"coalitionID" : 139827,
"osVersion" : {
"train" : "macOS 14.3.1",
"build" : "23D60",
"releaseType" : "User"
},
"captureTime" : "2024-07-24 08:49:30.7299 +0900",
"codeSigningMonitor" : 1,
"incident" : "608E4A82-2219-4B45-B7EC-3AC6B51EC74E",
"pid" : 21703,
"translated" : true,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-07-24 08:49:28.2132 +0900",
"procStartAbsTime" : 33412438070221,
"procExitAbsTime" : 33412498390583,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.7.1","CFBundleVersion":"1.7.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"97D4F1E8-6C4F-52EC-A5DE-5DA7AD98A759","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "286E4181-0333-903E-6993-0E6928266046",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"wakeTime" : 3115,
"sleepWakeUUID" : "950F7167-9679-4728-9024-0CE8A139C9EF",
"sip" : "enabled",
"exception" : {"codes":"0x0000000000000000, 0x0000000000000000","rawCodes":[0,0],"type":"EXC_CRASH","signal":"SIGABRT"},
"termination" : {"flags":0,"code":6,"namespace":"SIGNAL","indicator":"Abort trap: 6","byProc":"ChimeraX","byPid":21703},
"asi" : {"libsystem_c.dylib":["abort() called"]},
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : [{"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":14757395258967641293},"r12":{"value":259},"rosetta":{"tmp2":{"value":140703497201560},"tmp1":{"value":140705919085132},"tmp0":{"value":18446744073709551615}},"rbx":{"value":8633012800,"symbolLocation":0,"symbol":"_main_thread"},"r8":{"value":6},"r15":{"value":22},"r10":{"value":8633012800,"symbolLocation":0,"symbol":"_main_thread"},"rdx":{"value":0},"rdi":{"value":4497435760,"symbolLocation":0,"symbol":"faulthandler_handlers"},"r9":{"value":14757395258967641293},"r13":{"value":140220473090817},"rflags":{"value":647},"rax":{"value":0},"rsp":{"value":2},"r11":{"value":4498480144,"symbolLocation":0,"symbol":"arena_map_root"},"rcx":{"value":0},"r14":{"value":8633012800,"symbolLocation":0,"symbol":"_main_thread"},"rsi":{"value":6}},"id":21788491,"triggered":true,"name":"CrBrowserMain","queue":"com.apple.main-thread","frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":34722,"symbol":"__pthread_kill","symbolLocation":10,"imageIndex":140},{"imageOffset":24368,"symbol":"pthread_kill","symbolLocation":262,"imageIndex":141},{"imageOffset":269992,"symbol":"raise","symbolLocation":24,"imageIndex":142},{"imageOffset":2590164,"symbol":"faulthandler_fatal_error","symbolLocation":388,"imageIndex":135},{"imageOffset":13181,"symbol":"_sigtramp","symbolLocation":29,"imageIndex":143},{"imageOffset":0,"imageIndex":139},{"imageOffset":522825,"symbol":"abort","symbolLocation":126,"imageIndex":142},{"imageOffset":36409,"symbol":"qAbort()","symbolLocation":9,"imageIndex":92},{"imageOffset":52505,"imageIndex":92},{"imageOffset":3647927,"symbol":"QMessageLogger::fatal(char const*, ...) const","symbolLocation":213,"imageIndex":92},{"imageOffset":72421,"imageIndex":84},{"imageOffset":47918,"imageIndex":84},{"imageOffset":48657,"imageIndex":84},{"imageOffset":51410,"symbol":"QQuickWidget::resizeEvent(QResizeEvent*)","symbolLocation":498,"imageIndex":84},{"imageOffset":65070,"imageIndex":74},{"imageOffset":389840,"symbol":"QWidget::event(QEvent*)","symbolLocation":1152,"imageIndex":87},{"imageOffset":56456,"symbol":"QQuickWidget::event(QEvent*)","symbolLocation":856,"imageIndex":84},{"imageOffset":66076,"imageIndex":74},{"imageOffset":51847,"symbol":"QApplicationPrivate::notify_helper(QObject*, QEvent*)","symbolLocation":247,"imageIndex":87},{"imageOffset":55875,"symbol":"QApplication::notify(QObject*, QEvent*)","symbolLocation":499,"imageIndex":87},{"imageOffset":1282534,"symbol":"sipQApplication::notify(QObject*, QEvent*)","symbolLocation":230,"imageIndex":86},{"imageOffset":449594,"symbol":"QCoreApplication::notifyInternal2(QObject*, QEvent*)","symbolLocation":170,"imageIndex":92},{"imageOffset":360831,"symbol":"QWidgetPrivate::sendPendingMoveAndResizeEvents(bool, bool)","symbolLocation":271,"imageIndex":87},{"imageOffset":384246,"symbol":"QWidgetPrivate::show_helper()","symbolLocation":38,"imageIndex":87},{"imageOffset":385200,"symbol":"QWidgetPrivate::showChildren(bool)","symbolLocation":288,"imageIndex":87},{"imageOffset":384280,"symbol":"QWidgetPrivate::show_helper()","symbolLocation":72,"imageIndex":87},{"imageOffset":387934,"symbol":"QWidgetPrivate::setVisible(bool)","symbolLocation":958,"imageIndex":87},{"imageOffset":41279,"symbol":"sipQWebEngineView::setVisible(bool)","symbolLocation":111,"imageIndex":73},{"imageOffset":384981,"symbol":"QWidgetPrivate::showChildren(bool)","symbolLocation":69,"imageIndex":87},{"imageOffset":384280,"symbol":"QWidgetPrivate::show_helper()","symbolLocation":72,"imageIndex":87},{"imageOffset":387934,"symbol":"QWidgetPrivate::setVisible(bool)","symbolLocation":958,"imageIndex":87},{"imageOffset":1367711,"symbol":"sipQWidget::setVisible(bool)","symbolLocation":111,"imageIndex":86},{"imageOffset":285716,"symbol":"QStackedLayout::setCurrentIndex(int)","symbolLocation":404,"imageIndex":87},{"imageOffset":1642047,"symbol":"meth_QStackedWidget_setCurrentWidget(_object*, _object*)","symbolLocation":95,"imageIndex":86},{"imageOffset":1095658,"symbol":"cfunction_call","symbolLocation":90,"imageIndex":135},{"imageOffset":680881,"symbol":"_PyObject_MakeTpCall","symbolLocation":129,"imageIndex":135},{"imageOffset":1917927,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":60455,"imageIndex":135},{"imageOffset":1942736,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":135},{"imageOffset":749660,"symbol":"property_descr_set","symbolLocation":124,"imageIndex":135},{"imageOffset":1128414,"symbol":"_PyObject_GenericSetAttrWithDict","symbolLocation":350,"imageIndex":135},{"imageOffset":1123890,"symbol":"PyObject_SetAttr","symbolLocation":82,"imageIndex":135},{"imageOffset":1878844,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":21372,"imageIndex":135},{"imageOffset":1852538,"symbol":"PyEval_EvalCode","symbolLocation":282,"imageIndex":135},{"imageOffset":1830115,"symbol":"builtin_exec","symbolLocation":483,"imageIndex":135},{"imageOffset":1098052,"symbol":"cfunction_vectorcall_FASTCALL_KEYWORDS","symbolLocation":68,"imageIndex":135},{"imageOffset":1917679,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":60207,"imageIndex":135},{"imageOffset":1942736,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":135},{"imageOffset":2561789,"symbol":"pymain_run_module","symbolLocation":253,"imageIndex":135},{"imageOffset":2560449,"symbol":"Py_RunMain","symbolLocation":2225,"imageIndex":135},{"imageOffset":2564475,"symbol":"pymain_main","symbolLocation":43,"imageIndex":135},{"imageOffset":2564426,"symbol":"Py_Main","symbolLocation":42,"imageIndex":135},{"imageOffset":15770,"symbol":"main","symbolLocation":122,"imageIndex":138},{"imageOffset":25478,"symbol":"start","symbolLocation":1942,"imageIndex":0}]},{"id":21788492,"name":"com.apple.rosetta.exceptionserver","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":34097745362944},"r12":{"value":0},"rosetta":{"tmp2":{"value":0},"tmp1":{"value":321070280293635},"tmp0":{"value":4294967296}},"rbx":{"value":321070280293635},"r8":{"value":7939},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":0},"rdi":{"value":0},"r9":{"value":81155},"r13":{"value":0},"rflags":{"value":514},"rax":{"value":268451845},"rsp":{"value":4294967296},"r11":{"value":0},"rcx":{"value":17314086914},"r14":{"value":0},"rsi":{"value":2616}},"frames":[{"imageOffset":17044,"imageIndex":136}]},{"id":21788500,"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":17870,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":140},{"imageOffset":26475,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":141},{"imageOffset":3466879,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":114},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}],"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":160},"r12":{"value":0},"rosetta":{"tmp2":{"value":140703497184708},"tmp1":{"value":140705919085132},"tmp0":{"value":18446744073709551615}},"rbx":{"value":0},"r8":{"value":140703497441741,"symbolLocation":0,"symbol":"_pthread_psynch_cond_cleanup"},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":0},"rdi":{"value":0},"r9":{"value":160},"r13":{"value":4294967552},"rflags":{"value":658},"rax":{"value":260},"rsp":{"value":0},"r11":{"value":0},"rcx":{"value":0},"r14":{"value":13035118592},"rsi":{"value":0}}},{"id":21788501,"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":17870,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":140},{"imageOffset":26475,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":141},{"imageOffset":3466879,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":114},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}],"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":160},"r12":{"value":0},"rosetta":{"tmp2":{"value":140703497184708},"tmp1":{"value":140705919085132},"tmp0":{"value":18446744073709551615}},"rbx":{"value":0},"r8":{"value":140703497441741,"symbolLocation":0,"symbol":"_pthread_psynch_cond_cleanup"},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":0},"rdi":{"value":0},"r9":{"value":160},"r13":{"value":4294967552},"rflags":{"value":658},"rax":{"value":260},"rsp":{"value":0},"r11":{"value":0},"rcx":{"value":0},"r14":{"value":13035655168},"rsi":{"value":0}}},{"id":21788502,"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":17870,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":140},{"imageOffset":26475,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":141},{"imageOffset":3466879,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":114},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}],"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":160},"r12":{"value":0},"rosetta":{"tmp2":{"value":140703497184708},"tmp1":{"value":140705919085132},"tmp0":{"value":18446744073709551615}},"rbx":{"value":0},"r8":{"value":140703497441741,"symbolLocation":0,"symbol":"_pthread_psynch_cond_cleanup"},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":0},"rdi":{"value":0},"r9":{"value":160},"r13":{"value":4294967552},"rflags":{"value":658},"rax":{"value":260},"rsp":{"value":0},"r11":{"value":0},"rcx":{"value":0},"r14":{"value":13036191744},"rsi":{"value":0}}},{"id":21788503,"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":17870,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":140},{"imageOffset":26475,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":141},{"imageOffset":3466879,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":114},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}],"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":160},"r12":{"value":0},"rosetta":{"tmp2":{"value":140703497184708},"tmp1":{"value":140705919085132},"tmp0":{"value":18446744073709551615}},"rbx":{"value":0},"r8":{"value":140703497441741,"symbolLocation":0,"symbol":"_pthread_psynch_cond_cleanup"},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":0},"rdi":{"value":0},"r9":{"value":160},"r13":{"value":4294967552},"rflags":{"value":658},"rax":{"value":260},"rsp":{"value":0},"r11":{"value":0},"rcx":{"value":0},"r14":{"value":13036728320},"rsi":{"value":0}}},{"id":21788504,"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":17870,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":140},{"imageOffset":26475,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":141},{"imageOffset":3466879,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":114},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}],"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":160},"r12":{"value":0},"rosetta":{"tmp2":{"value":140703497184708},"tmp1":{"value":140705919085132},"tmp0":{"value":18446744073709551615}},"rbx":{"value":0},"r8":{"value":140703497441741,"symbolLocation":0,"symbol":"_pthread_psynch_cond_cleanup"},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":0},"rdi":{"value":0},"r9":{"value":160},"r13":{"value":4294967552},"rflags":{"value":658},"rax":{"value":260},"rsp":{"value":0},"r11":{"value":0},"rcx":{"value":0},"r14":{"value":13037264896},"rsi":{"value":0}}},{"id":21788505,"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":17870,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":140},{"imageOffset":26475,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":141},{"imageOffset":3466879,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":114},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}],"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":160},"r12":{"value":0},"rosetta":{"tmp2":{"value":140703497184708},"tmp1":{"value":140705919085132},"tmp0":{"value":18446744073709551615}},"rbx":{"value":0},"r8":{"value":140703497441741,"symbolLocation":0,"symbol":"_pthread_psynch_cond_cleanup"},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":0},"rdi":{"value":0},"r9":{"value":160},"r13":{"value":4294967552},"rflags":{"value":658},"rax":{"value":260},"rsp":{"value":0},"r11":{"value":0},"rcx":{"value":0},"r14":{"value":13037801472},"rsi":{"value":0}}},{"id":21788506,"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":17870,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":140},{"imageOffset":26475,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":141},{"imageOffset":3466879,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":114},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}],"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":160},"r12":{"value":0},"rosetta":{"tmp2":{"value":140703497184708},"tmp1":{"value":140705919085132},"tmp0":{"value":18446744073709551615}},"rbx":{"value":0},"r8":{"value":140703497441741,"symbolLocation":0,"symbol":"_pthread_psynch_cond_cleanup"},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":0},"rdi":{"value":0},"r9":{"value":160},"r13":{"value":4294967552},"rflags":{"value":658},"rax":{"value":260},"rsp":{"value":0},"r11":{"value":0},"rcx":{"value":0},"r14":{"value":13038338048},"rsi":{"value":0}}},{"id":21788510,"frames":[{"imageOffset":141644,"imageIndex":136}],"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":18446744073709551615},"r12":{"value":0},"rosetta":{"tmp2":{"value":0},"tmp1":{"value":0},"tmp0":{"value":0}},"rbx":{"value":0},"r8":{"value":0},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":13038358528},"rdi":{"value":0},"r9":{"value":0},"r13":{"value":0},"rflags":{"value":531},"rax":{"value":13038895104},"rsp":{"value":409604},"r11":{"value":0},"rcx":{"value":9731},"r14":{"value":0},"rsi":{"value":0}}},{"id":21788511,"frames":[{"imageOffset":141644,"imageIndex":136}],"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":18446744073709551615},"r12":{"value":0},"rosetta":{"tmp2":{"value":0},"tmp1":{"value":0},"tmp0":{"value":0}},"rbx":{"value":0},"r8":{"value":0},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":13038915584},"rdi":{"value":0},"r9":{"value":0},"r13":{"value":0},"rflags":{"value":531},"rax":{"value":13039452160},"rsp":{"value":409602},"r11":{"value":0},"rcx":{"value":16131},"r14":{"value":0},"rsi":{"value":0}}},{"id":21788587,"frames":[{"imageOffset":141644,"imageIndex":136}],"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":18446744073709551615},"r12":{"value":0},"rosetta":{"tmp2":{"value":0},"tmp1":{"value":0},"tmp0":{"value":0}},"rbx":{"value":0},"r8":{"value":0},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":13039472640},"rdi":{"value":0},"r9":{"value":0},"r13":{"value":0},"rflags":{"value":531},"rax":{"value":13040009216},"rsp":{"value":409604},"r11":{"value":0},"rcx":{"value":29187},"r14":{"value":0},"rsi":{"value":0}}},{"id":21788607,"name":"com.apple.coremedia.sharedRootQueue.47","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":140220398977024},"r12":{"value":0},"rosetta":{"tmp2":{"value":140703497189001},"tmp1":{"value":140705919085128},"tmp0":{"value":18446744073709551615}},"rbx":{"value":4294966759129088000},"r8":{"value":140220446662496},"r15":{"value":19342813113834067},"r10":{"value":4294966759129088000},"rdx":{"value":999999875},"rdi":{"value":140220446662560},"r9":{"value":140220398977024},"r13":{"value":18446744071427850239},"rflags":{"value":659},"rax":{"value":14},"rsp":{"value":3406},"r11":{"value":18446744073709535232},"rcx":{"value":4294966759129088004},"r14":{"value":140220446662560},"rsi":{"value":1392191979688042}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":6594,"symbol":"semaphore_timedwait_trap","symbolLocation":10,"imageIndex":140},{"imageOffset":15083,"symbol":"_dispatch_sema4_timedwait","symbolLocation":73,"imageIndex":144},{"imageOffset":16183,"symbol":"_dispatch_semaphore_wait_slow","symbolLocation":58,"imageIndex":144},{"imageOffset":75181,"symbol":"_dispatch_worker_thread","symbolLocation":321,"imageIndex":144},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788615,"name":"com.apple.coremedia.sharedRootQueue.47","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":166039140696064},"r12":{"value":0},"rosetta":{"tmp2":{"value":140703497189001},"tmp1":{"value":140705919085128},"tmp0":{"value":18446744073709551615}},"rbx":{"value":4294966939517714432},"r8":{"value":140220446662496},"r15":{"value":19342813113834067},"r10":{"value":4294966939517714432},"rdx":{"value":999999917},"rdi":{"value":140220446662560},"r9":{"value":166039140696064},"r13":{"value":18446744071427850239},"rflags":{"value":659},"rax":{"value":14},"rsp":{"value":3406},"r11":{"value":0},"rcx":{"value":4294966939517714436},"r14":{"value":140220446662560},"rsi":{"value":1392191953583625}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":6594,"symbol":"semaphore_timedwait_trap","symbolLocation":10,"imageIndex":140},{"imageOffset":15083,"symbol":"_dispatch_sema4_timedwait","symbolLocation":73,"imageIndex":144},{"imageOffset":16183,"symbol":"_dispatch_semaphore_wait_slow","symbolLocation":58,"imageIndex":144},{"imageOffset":75181,"symbol":"_dispatch_worker_thread","symbolLocation":321,"imageIndex":144},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788620,"name":"ThreadPoolServiceThread","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":0},"r12":{"value":140220446707536},"rosetta":{"tmp2":{"value":140703497213132},"tmp1":{"value":140705919085132},"tmp0":{"value":18446744073709551615}},"rbx":{"value":140220446749312},"r8":{"value":140220446707800},"r15":{"value":0},"r10":{"value":140220446749312},"rdx":{"value":0},"rdi":{"value":2},"r9":{"value":0},"r13":{"value":13050002824},"rflags":{"value":662},"rax":{"value":4},"rsp":{"value":4},"r11":{"value":18446744073709535232},"rcx":{"value":0},"r14":{"value":140220446702280},"rsi":{"value":0}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":46294,"symbol":"kevent64","symbolLocation":10,"imageIndex":140},{"imageOffset":66456106,"imageIndex":76},{"imageOffset":66455847,"imageIndex":76},{"imageOffset":65919580,"imageIndex":76},{"imageOffset":65624472,"imageIndex":76},{"imageOffset":66059960,"imageIndex":76},{"imageOffset":65958573,"imageIndex":76},{"imageOffset":66060362,"imageIndex":76},{"imageOffset":66222344,"imageIndex":76},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788621,"name":"ThreadPoolForegroundWorker","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":277089815101440},"r12":{"value":33000},"rosetta":{"tmp2":{"value":140703497231930},"tmp1":{"value":140705919085416},"tmp0":{"value":18446744073709551615}},"rbx":{"value":277089815101440},"r8":{"value":0},"r15":{"value":277089815101440},"r10":{"value":277089815101440},"rdx":{"value":0},"rdi":{"value":33000},"r9":{"value":277089815101440},"r13":{"value":17179869442},"rflags":{"value":643},"rax":{"value":268451845},"rsp":{"value":0},"r11":{"value":32},"rcx":{"value":17179869442},"r14":{"value":32},"rsi":{"value":32}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":6702,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":140},{"imageOffset":65082,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":140},{"imageOffset":35682,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":140},{"imageOffset":7455,"symbol":"mach_msg","symbolLocation":19,"imageIndex":140},{"imageOffset":66252326,"imageIndex":76},{"imageOffset":66009023,"imageIndex":76},{"imageOffset":66011756,"imageIndex":76},{"imageOffset":66010733,"imageIndex":76},{"imageOffset":66222344,"imageIndex":76},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788622,"name":"ThreadPoolBackgroundWorker","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":195743134515200},"r12":{"value":33000},"rosetta":{"tmp2":{"value":140703497231930},"tmp1":{"value":140705919085416},"tmp0":{"value":18446744073709551615}},"rbx":{"value":195743134515200},"r8":{"value":0},"r15":{"value":195743134515200},"r10":{"value":195743134515200},"rdx":{"value":0},"rdi":{"value":33000},"r9":{"value":195743134515200},"r13":{"value":17179869442},"rflags":{"value":643},"rax":{"value":268451845},"rsp":{"value":0},"r11":{"value":32},"rcx":{"value":17179869442},"r14":{"value":32},"rsi":{"value":32}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":6702,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":140},{"imageOffset":65082,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":140},{"imageOffset":35682,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":140},{"imageOffset":7455,"symbol":"mach_msg","symbolLocation":19,"imageIndex":140},{"imageOffset":66252326,"imageIndex":76},{"imageOffset":66009023,"imageIndex":76},{"imageOffset":66011034,"imageIndex":76},{"imageOffset":66010589,"imageIndex":76},{"imageOffset":66222344,"imageIndex":76},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788623,"name":"Chrome_IOThread","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":0},"r12":{"value":140220398977184},"rosetta":{"tmp2":{"value":140703497213132},"tmp1":{"value":140705919085132},"tmp0":{"value":18446744073709551615}},"rbx":{"value":140220365803296},"r8":{"value":140220398977448},"r15":{"value":0},"r10":{"value":140220365803296},"rdx":{"value":0},"rdi":{"value":2},"r9":{"value":0},"r13":{"value":13075156328},"rflags":{"value":662},"rax":{"value":4},"rsp":{"value":2},"r11":{"value":140703513778154,"symbolLocation":0,"symbol":"-[NSAutoreleasePool init]"},"rcx":{"value":0},"r14":{"value":140220446700040},"rsi":{"value":0}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":46294,"symbol":"kevent64","symbolLocation":10,"imageIndex":140},{"imageOffset":66456106,"imageIndex":76},{"imageOffset":66455847,"imageIndex":76},{"imageOffset":65919580,"imageIndex":76},{"imageOffset":65624472,"imageIndex":76},{"imageOffset":66059960,"imageIndex":76},{"imageOffset":48386978,"imageIndex":76},{"imageOffset":66060362,"imageIndex":76},{"imageOffset":66222344,"imageIndex":76},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788624,"name":"NetworkConfigWatcher","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":267194210451456},"r12":{"value":1000},"rosetta":{"tmp2":{"value":140703497231930},"tmp1":{"value":140705919085416},"tmp0":{"value":18446744073709551615}},"rbx":{"value":267194210451456},"r8":{"value":0},"r15":{"value":267194210451456},"r10":{"value":267194210451456},"rdx":{"value":0},"rdi":{"value":1000},"r9":{"value":267194210451456},"r13":{"value":17179869442},"rflags":{"value":643},"rax":{"value":268451845},"rsp":{"value":0},"r11":{"value":32},"rcx":{"value":17179869442},"r14":{"value":32},"rsi":{"value":32}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":6702,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":140},{"imageOffset":65082,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":140},{"imageOffset":35682,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":140},{"imageOffset":7455,"symbol":"mach_msg","symbolLocation":19,"imageIndex":140},{"imageOffset":66252326,"imageIndex":76},{"imageOffset":65421672,"imageIndex":76},{"imageOffset":65919580,"imageIndex":76},{"imageOffset":65624472,"imageIndex":76},{"imageOffset":66059960,"imageIndex":76},{"imageOffset":66060362,"imageIndex":76},{"imageOffset":66222344,"imageIndex":76},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788625,"name":"ThreadPoolForegroundWorker","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":210019605807104},"r12":{"value":33000},"rosetta":{"tmp2":{"value":140703497231930},"tmp1":{"value":140705919085416},"tmp0":{"value":18446744073709551615}},"rbx":{"value":210019605807104},"r8":{"value":0},"r15":{"value":210019605807104},"r10":{"value":210019605807104},"rdx":{"value":0},"rdi":{"value":33000},"r9":{"value":210019605807104},"r13":{"value":17179869442},"rflags":{"value":643},"rax":{"value":268451845},"rsp":{"value":0},"r11":{"value":32},"rcx":{"value":17179869442},"r14":{"value":32},"rsi":{"value":32}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":6702,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":140},{"imageOffset":65082,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":140},{"imageOffset":35682,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":140},{"imageOffset":7455,"symbol":"mach_msg","symbolLocation":19,"imageIndex":140},{"imageOffset":66252326,"imageIndex":76},{"imageOffset":66009023,"imageIndex":76},{"imageOffset":66011756,"imageIndex":76},{"imageOffset":66010733,"imageIndex":76},{"imageOffset":66222344,"imageIndex":76},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788626,"name":"ThreadPoolForegroundWorker","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":212218629062656},"r12":{"value":33000},"rosetta":{"tmp2":{"value":140703497231930},"tmp1":{"value":140705919085416},"tmp0":{"value":18446744073709551615}},"rbx":{"value":212218629062656},"r8":{"value":0},"r15":{"value":212218629062656},"r10":{"value":212218629062656},"rdx":{"value":0},"rdi":{"value":33000},"r9":{"value":212218629062656},"r13":{"value":17179869442},"rflags":{"value":643},"rax":{"value":268451845},"rsp":{"value":0},"r11":{"value":32},"rcx":{"value":17179869442},"r14":{"value":32},"rsi":{"value":32}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":6702,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":140},{"imageOffset":65082,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":140},{"imageOffset":35682,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":140},{"imageOffset":7455,"symbol":"mach_msg","symbolLocation":19,"imageIndex":140},{"imageOffset":66252326,"imageIndex":76},{"imageOffset":66009023,"imageIndex":76},{"imageOffset":66011756,"imageIndex":76},{"imageOffset":66010733,"imageIndex":76},{"imageOffset":66222344,"imageIndex":76},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788627,"name":"ThreadPoolForegroundWorker","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":213352500428800},"r12":{"value":33000},"rosetta":{"tmp2":{"value":140703497231930},"tmp1":{"value":140705919085416},"tmp0":{"value":18446744073709551615}},"rbx":{"value":213352500428800},"r8":{"value":0},"r15":{"value":213352500428800},"r10":{"value":213352500428800},"rdx":{"value":0},"rdi":{"value":33000},"r9":{"value":213352500428800},"r13":{"value":17179869442},"rflags":{"value":643},"rax":{"value":268451845},"rsp":{"value":0},"r11":{"value":32},"rcx":{"value":17179869442},"r14":{"value":32},"rsi":{"value":32}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":6702,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":140},{"imageOffset":65082,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":140},{"imageOffset":35682,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":140},{"imageOffset":7455,"symbol":"mach_msg","symbolLocation":19,"imageIndex":140},{"imageOffset":66252326,"imageIndex":76},{"imageOffset":66009023,"imageIndex":76},{"imageOffset":66011034,"imageIndex":76},{"imageOffset":66010733,"imageIndex":76},{"imageOffset":66222344,"imageIndex":76},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788628,"name":"CompositorTileWorker1","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":161},"r12":{"value":0},"rosetta":{"tmp2":{"value":140703497184708},"tmp1":{"value":140705919085132},"tmp0":{"value":18446744073709551615}},"rbx":{"value":0},"r8":{"value":140703497441741,"symbolLocation":0,"symbol":"_pthread_psynch_cond_cleanup"},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":0},"rdi":{"value":0},"r9":{"value":161},"r13":{"value":4294967552},"rflags":{"value":658},"rax":{"value":260},"rsp":{"value":0},"r11":{"value":0},"rcx":{"value":0},"r14":{"value":13117079552},"rsi":{"value":0}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":17870,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":140},{"imageOffset":26475,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":141},{"imageOffset":66219291,"imageIndex":76},{"imageOffset":100616493,"imageIndex":76},{"imageOffset":66222344,"imageIndex":76},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788629,"name":"Chrome_InProcGpuThread","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":221014722084864},"r12":{"value":14714},"rosetta":{"tmp2":{"value":140703497231930},"tmp1":{"value":140705919085416},"tmp0":{"value":18446744073709551615}},"rbx":{"value":221014722084864},"r8":{"value":0},"r15":{"value":221014722084864},"r10":{"value":221014722084864},"rdx":{"value":0},"rdi":{"value":14714},"r9":{"value":221014722084864},"r13":{"value":17179869442},"rflags":{"value":643},"rax":{"value":268451845},"rsp":{"value":0},"r11":{"value":32},"rcx":{"value":17179869442},"r14":{"value":32},"rsi":{"value":32}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":6702,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":140},{"imageOffset":65082,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":140},{"imageOffset":35682,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":140},{"imageOffset":7455,"symbol":"mach_msg","symbolLocation":19,"imageIndex":140},{"imageOffset":66252326,"imageIndex":76},{"imageOffset":65421672,"imageIndex":76},{"imageOffset":65919580,"imageIndex":76},{"imageOffset":65624472,"imageIndex":76},{"imageOffset":66059960,"imageIndex":76},{"imageOffset":66060362,"imageIndex":76},{"imageOffset":66222344,"imageIndex":76},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788630,"name":"Chrome_ChildIOThread","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":0},"r12":{"value":140220440543424},"rosetta":{"tmp2":{"value":140703497213132},"tmp1":{"value":140705919085132},"tmp0":{"value":18446744073709551615}},"rbx":{"value":140220440543760},"r8":{"value":140220440543688},"r15":{"value":0},"r10":{"value":140220440543760},"rdx":{"value":0},"rdi":{"value":2},"r9":{"value":0},"r13":{"value":13133847976},"rflags":{"value":662},"rax":{"value":4},"rsp":{"value":1},"r11":{"value":18446744073709535232},"rcx":{"value":0},"r14":{"value":140220366068856},"rsi":{"value":0}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":46294,"symbol":"kevent64","symbolLocation":10,"imageIndex":140},{"imageOffset":66456106,"imageIndex":76},{"imageOffset":66455847,"imageIndex":76},{"imageOffset":65919580,"imageIndex":76},{"imageOffset":65624472,"imageIndex":76},{"imageOffset":66059960,"imageIndex":76},{"imageOffset":66060362,"imageIndex":76},{"imageOffset":66222344,"imageIndex":76},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788631,"name":"VizCompositorThread","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":241905443012608},"r12":{"value":0},"rosetta":{"tmp2":{"value":140703497231930},"tmp1":{"value":140705919085416},"tmp0":{"value":18446744073709551615}},"rbx":{"value":241905443012608},"r8":{"value":0},"r15":{"value":241905443012608},"r10":{"value":241905443012608},"rdx":{"value":0},"rdi":{"value":0},"r9":{"value":241905443012608},"r13":{"value":17179869186},"rflags":{"value":643},"rax":{"value":268451845},"rsp":{"value":0},"r11":{"value":32},"rcx":{"value":17179869186},"r14":{"value":32},"rsi":{"value":32}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":6702,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":140},{"imageOffset":65082,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":140},{"imageOffset":35682,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":140},{"imageOffset":7455,"symbol":"mach_msg","symbolLocation":19,"imageIndex":140},{"imageOffset":66252326,"imageIndex":76},{"imageOffset":66251759,"imageIndex":76},{"imageOffset":65421769,"imageIndex":76},{"imageOffset":65919580,"imageIndex":76},{"imageOffset":65624472,"imageIndex":76},{"imageOffset":66059960,"imageIndex":76},{"imageOffset":66060362,"imageIndex":76},{"imageOffset":66222344,"imageIndex":76},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788634,"name":"NetworkConfigWatcher","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":372747326717952},"r12":{"value":1000},"rosetta":{"tmp2":{"value":140703497231930},"tmp1":{"value":140705919085416},"tmp0":{"value":18446744073709551615}},"rbx":{"value":372747326717952},"r8":{"value":0},"r15":{"value":372747326717952},"r10":{"value":372747326717952},"rdx":{"value":0},"rdi":{"value":1000},"r9":{"value":372747326717952},"r13":{"value":17179869442},"rflags":{"value":643},"rax":{"value":268451845},"rsp":{"value":0},"r11":{"value":32},"rcx":{"value":17179869442},"r14":{"value":32},"rsi":{"value":32}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":6702,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":140},{"imageOffset":65082,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":140},{"imageOffset":35682,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":140},{"imageOffset":7455,"symbol":"mach_msg","symbolLocation":19,"imageIndex":140},{"imageOffset":66252326,"imageIndex":76},{"imageOffset":65421672,"imageIndex":76},{"imageOffset":65919580,"imageIndex":76},{"imageOffset":65624472,"imageIndex":76},{"imageOffset":66059960,"imageIndex":76},{"imageOffset":66060362,"imageIndex":76},{"imageOffset":66222344,"imageIndex":76},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788635,"name":"NetworkService","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":0},"r12":{"value":140220473324432},"rosetta":{"tmp2":{"value":140703497213132},"tmp1":{"value":140705919085132},"tmp0":{"value":18446744073709551615}},"rbx":{"value":140220473313056},"r8":{"value":140220473324696},"r15":{"value":0},"r10":{"value":140220473313056},"rdx":{"value":0},"rdi":{"value":2},"r9":{"value":0},"r13":{"value":13159001512},"rflags":{"value":662},"rax":{"value":4},"rsp":{"value":2},"r11":{"value":18446744073709535232},"rcx":{"value":0},"r14":{"value":140220472730200},"rsi":{"value":0}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":46294,"symbol":"kevent64","symbolLocation":10,"imageIndex":140},{"imageOffset":66456106,"imageIndex":76},{"imageOffset":66455847,"imageIndex":76},{"imageOffset":65919580,"imageIndex":76},{"imageOffset":65624472,"imageIndex":76},{"imageOffset":66059960,"imageIndex":76},{"imageOffset":66060362,"imageIndex":76},{"imageOffset":66222344,"imageIndex":76},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788636,"name":"NetworkConfigWatcher","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":289184443006976},"r12":{"value":1000},"rosetta":{"tmp2":{"value":140703497231930},"tmp1":{"value":140705919085416},"tmp0":{"value":18446744073709551615}},"rbx":{"value":289184443006976},"r8":{"value":0},"r15":{"value":289184443006976},"r10":{"value":289184443006976},"rdx":{"value":0},"rdi":{"value":1000},"r9":{"value":289184443006976},"r13":{"value":17179869442},"rflags":{"value":643},"rax":{"value":268451845},"rsp":{"value":0},"r11":{"value":32},"rcx":{"value":17179869442},"r14":{"value":32},"rsi":{"value":32}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":6702,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":140},{"imageOffset":65082,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":140},{"imageOffset":35682,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":140},{"imageOffset":7455,"symbol":"mach_msg","symbolLocation":19,"imageIndex":140},{"imageOffset":66252326,"imageIndex":76},{"imageOffset":65421672,"imageIndex":76},{"imageOffset":65919580,"imageIndex":76},{"imageOffset":65624472,"imageIndex":76},{"imageOffset":66059960,"imageIndex":76},{"imageOffset":66060362,"imageIndex":76},{"imageOffset":66222344,"imageIndex":76},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788637,"name":"ThreadPoolSingleThreadForegroundBlocking0","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":295781512773632},"r12":{"value":0},"rosetta":{"tmp2":{"value":140703497231930},"tmp1":{"value":140705919085416},"tmp0":{"value":18446744073709551615}},"rbx":{"value":295781512773632},"r8":{"value":0},"r15":{"value":295781512773632},"r10":{"value":295781512773632},"rdx":{"value":0},"rdi":{"value":0},"r9":{"value":295781512773632},"r13":{"value":17179869186},"rflags":{"value":643},"rax":{"value":268451845},"rsp":{"value":0},"r11":{"value":32},"rcx":{"value":17179869186},"r14":{"value":32},"rsi":{"value":32}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":6702,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":140},{"imageOffset":65082,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":140},{"imageOffset":35682,"symbol":"mach_msg_overwrite","symbolLocation":653,"imageIndex":140},{"imageOffset":7455,"symbol":"mach_msg","symbolLocation":19,"imageIndex":140},{"imageOffset":66252326,"imageIndex":76},{"imageOffset":66009023,"imageIndex":76},{"imageOffset":66011756,"imageIndex":76},{"imageOffset":66010829,"imageIndex":76},{"imageOffset":66222344,"imageIndex":76},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788640,"frames":[{"imageOffset":141644,"imageIndex":136}],"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":18446744073709551615},"r12":{"value":0},"rosetta":{"tmp2":{"value":0},"tmp1":{"value":0},"tmp0":{"value":0}},"rbx":{"value":0},"r8":{"value":0},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":13175787520},"rdi":{"value":0},"r9":{"value":0},"r13":{"value":0},"rflags":{"value":531},"rax":{"value":13176324096},"rsp":{"value":409604},"r11":{"value":0},"rcx":{"value":70915},"r14":{"value":0},"rsi":{"value":0}}},{"id":21788650,"name":"Thread (pooled)","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":160},"r12":{"value":999998792},"rosetta":{"tmp2":{"value":140703497184708},"tmp1":{"value":140705919085132},"tmp0":{"value":18446744073709551615}},"rbx":{"value":0},"r8":{"value":140703497441741,"symbolLocation":0,"symbol":"_pthread_psynch_cond_cleanup"},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":0},"rdi":{"value":999998792},"r9":{"value":160},"r13":{"value":4294967552},"rflags":{"value":658},"rax":{"value":260},"rsp":{"value":0},"r11":{"value":0},"rcx":{"value":0},"r14":{"value":13041618944},"rsi":{"value":29}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":17870,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":140},{"imageOffset":26475,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":141},{"imageOffset":2108406,"imageIndex":92},{"imageOffset":2107662,"imageIndex":92},{"imageOffset":2107486,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":94,"imageIndex":92},{"imageOffset":2084167,"imageIndex":92},{"imageOffset":2066019,"imageIndex":92},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788651,"name":"Thread (pooled)","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":160},"r12":{"value":999999916},"rosetta":{"tmp2":{"value":140703497184708},"tmp1":{"value":140705919085132},"tmp0":{"value":18446744073709551615}},"rbx":{"value":0},"r8":{"value":140703497441741,"symbolLocation":0,"symbol":"_pthread_psynch_cond_cleanup"},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":0},"rdi":{"value":999999916},"r9":{"value":160},"r13":{"value":4294967552},"rflags":{"value":658},"rax":{"value":260},"rsp":{"value":0},"r11":{"value":0},"rcx":{"value":0},"r14":{"value":13176860672},"rsi":{"value":29}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":17870,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":140},{"imageOffset":26475,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":141},{"imageOffset":2108406,"imageIndex":92},{"imageOffset":2107662,"imageIndex":92},{"imageOffset":2107486,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":94,"imageIndex":92},{"imageOffset":2084167,"imageIndex":92},{"imageOffset":2066019,"imageIndex":92},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788652,"name":"Thread (pooled)","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":160},"r12":{"value":999999875},"rosetta":{"tmp2":{"value":140703497184708},"tmp1":{"value":140705919085132},"tmp0":{"value":18446744073709551615}},"rbx":{"value":0},"r8":{"value":140703497441741,"symbolLocation":0,"symbol":"_pthread_psynch_cond_cleanup"},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":0},"rdi":{"value":999999875},"r9":{"value":160},"r13":{"value":4294967552},"rflags":{"value":658},"rax":{"value":260},"rsp":{"value":0},"r11":{"value":0},"rcx":{"value":0},"r14":{"value":13177397248},"rsi":{"value":29}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":17870,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":140},{"imageOffset":26475,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":141},{"imageOffset":2108406,"imageIndex":92},{"imageOffset":2107662,"imageIndex":92},{"imageOffset":2107486,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":94,"imageIndex":92},{"imageOffset":2084167,"imageIndex":92},{"imageOffset":2066019,"imageIndex":92},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]},{"id":21788653,"name":"Thread (pooled)","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":160},"r12":{"value":999999959},"rosetta":{"tmp2":{"value":140703497184708},"tmp1":{"value":140705919085132},"tmp0":{"value":18446744073709551615}},"rbx":{"value":0},"r8":{"value":140703497441741,"symbolLocation":0,"symbol":"_pthread_psynch_cond_cleanup"},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":0},"rdi":{"value":999999959},"r9":{"value":160},"r13":{"value":4294967552},"rflags":{"value":658},"rax":{"value":260},"rsp":{"value":0},"r11":{"value":0},"rcx":{"value":0},"r14":{"value":13177933824},"rsi":{"value":29}},"frames":[{"imageOffset":140705919085176,"imageIndex":139},{"imageOffset":17870,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":140},{"imageOffset":26475,"symbol":"_pthread_cond_wait","symbolLocation":1211,"imageIndex":141},{"imageOffset":2108406,"imageIndex":92},{"imageOffset":2107662,"imageIndex":92},{"imageOffset":2107486,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":94,"imageIndex":92},{"imageOffset":2084167,"imageIndex":92},{"imageOffset":2066019,"imageIndex":92},{"imageOffset":25090,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":141},{"imageOffset":7083,"symbol":"thread_start","symbolLocation":15,"imageIndex":141}]}],
"usedImages" : [
{
"source" : "P",
"arch" : "x86_64",
"base" : 8632307712,
"size" : 655360,
"uuid" : "01ae3ae3-f6ca-34d1-a2f8-462ede5fa818",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5078503424,
"size" : 16384,
"uuid" : "136e83be-523c-3e0a-8ee9-ac44338f577c",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_mac_util.cpython-311-darwin.so",
"name" : "_mac_util.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5890789376,
"size" : 65536,
"uuid" : "ee29ba8c-1d0d-3f59-a9c8-0249d34aef2d",
"path" : "\/usr\/lib\/libobjc-trampolines.dylib",
"name" : "libobjc-trampolines.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5801447424,
"size" : 16384,
"uuid" : "5c82e5f4-7664-3325-95c1-a2286b531838",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5848379392,
"size" : 32768,
"uuid" : "9c20a913-80f2-3790-82d6-f5f257f40a80",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/lib\/libpdbconnect.dylib",
"name" : "libpdbconnect.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5853192192,
"size" : 573440,
"uuid" : "607364f1-42f7-3d00-a4e8-3d3930973dee",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwebp.dylib",
"name" : "libqwebp.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5848252416,
"size" : 32768,
"uuid" : "4555e0fe-0041-3b9d-a56b-13b66a6d3148",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwbmp.dylib",
"name" : "libqwbmp.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5851541504,
"size" : 425984,
"uuid" : "c1d9cbcb-157d-3efb-b925-47d5b0aa636a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtiff.dylib",
"name" : "libqtiff.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5848129536,
"size" : 32768,
"uuid" : "ea65a913-faaa-3a98-9152-8f5cb46cefe2",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtga.dylib",
"name" : "libqtga.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5848002560,
"size" : 32768,
"uuid" : "5e0161ca-ceec-363f-8779-78f703b77183",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqsvg.dylib",
"name" : "libqsvg.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5850193920,
"size" : 245760,
"uuid" : "b664e91f-c9aa-3e4d-a93a-9600b9e093d2",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtSvg.framework\/Versions\/A\/QtSvg",
"name" : "QtSvg"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5813919744,
"size" : 32768,
"uuid" : "1e969447-e94a-32a1-9213-d22fc6f91912",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacjp2.dylib",
"name" : "libqmacjp2.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5806751744,
"size" : 32768,
"uuid" : "986394df-4589-3b8d-9ea9-f6f1e56f1b5e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacheif.dylib",
"name" : "libqmacheif.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5849182208,
"size" : 458752,
"uuid" : "9ae20c42-01c8-33fe-9659-3452efdaa18b",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqjpeg.dylib",
"name" : "libqjpeg.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5823627264,
"size" : 32768,
"uuid" : "db9371e6-1f91-3bb7-b809-279e47d8ddf6",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqico.dylib",
"name" : "libqico.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5846302720,
"size" : 49152,
"uuid" : "6fa7f1f6-f0d8-3c40-bcba-c9efedd60ea4",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqicns.dylib",
"name" : "libqicns.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5811458048,
"size" : 32768,
"uuid" : "79131285-478a-3db6-a280-53666b87c3a7",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqgif.dylib",
"name" : "libqgif.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5848576000,
"size" : 180224,
"uuid" : "51e1e878-bbc5-3f02-b917-b1ff75adab8e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/surface\/_surface.cpython-311-darwin.so",
"name" : "_surface.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5846507520,
"size" : 98304,
"uuid" : "7927d573-a75a-3483-b846-b34afb8cd28d",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/vbo.cpython-311-darwin.so",
"name" : "vbo.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5842960384,
"size" : 32768,
"uuid" : "ada3a7a8-1026-3b4a-9d87-6fce8df2fb33",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/latebind.cpython-311-darwin.so",
"name" : "latebind.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5823410176,
"size" : 32768,
"uuid" : "1936789e-b9b0-3e1f-8cfa-fc88f0803ad5",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/formathandler.cpython-311-darwin.so",
"name" : "formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5842161664,
"size" : 180224,
"uuid" : "d98e7117-18dd-37b7-9c74-472d0c79861a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/wrapper.cpython-311-darwin.so",
"name" : "wrapper.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5837684736,
"size" : 163840,
"uuid" : "84c28449-2886-395e-a902-73f67264df32",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/arraydatatype.cpython-311-darwin.so",
"name" : "arraydatatype.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5809344512,
"size" : 32768,
"uuid" : "2e49f12e-2bd1-36ff-a452-6af1ad840335",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/errorchecker.cpython-311-darwin.so",
"name" : "errorchecker.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5798256640,
"size" : 49152,
"uuid" : "f299aa93-affb-3200-ba08-9d3d8c6da134",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGLWidgets.abi3.so",
"name" : "QtOpenGLWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5806592000,
"size" : 32768,
"uuid" : "4e4bafab-4516-3b13-9719-e3642c80791e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGLWidgets.framework\/Versions\/A\/QtOpenGLWidgets",
"name" : "QtOpenGLWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5838417920,
"size" : 704512,
"uuid" : "a4ad5b64-7236-3230-857c-bc3c882c9b69",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGL.abi3.so",
"name" : "QtOpenGL.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5830905856,
"size" : 163840,
"uuid" : "aef34ee9-c864-3f86-9c23-674b05a8f622",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_image.cpython-311-darwin.so",
"name" : "_image.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5822910464,
"size" : 98304,
"uuid" : "b95403ec-ebee-307e-a234-a98fa49425bf",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/kiwisolver\/_cext.cpython-311-darwin.so",
"name" : "_cext.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5823787008,
"size" : 671744,
"uuid" : "3ff53eba-e1c5-3012-8833-8f274ca1f445",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/ft2font.cpython-311-darwin.so",
"name" : "ft2font.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5822504960,
"size" : 131072,
"uuid" : "ff530dfd-f9a0-3647-8791-e3141a233416",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_path.cpython-311-darwin.so",
"name" : "_path.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5798158336,
"size" : 16384,
"uuid" : "ab1ede05-8390-3ffd-92d7-7ce53a7c9be2",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_c_internal_utils.cpython-311-darwin.so",
"name" : "_c_internal_utils.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5789818880,
"size" : 16384,
"uuid" : "6471263b-077e-389e-bb71-0c6152f93a06",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/termios.cpython-311-darwin.so",
"name" : "termios.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5809586176,
"size" : 393216,
"uuid" : "d2838c07-3bac-3b2d-87c3-72aded2e5165",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imaging.cpython-311-darwin.so",
"name" : "_imaging.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5811634176,
"size" : 655360,
"uuid" : "eb2b7b54-aae9-33c5-ad3a-429b3a4f72ad",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libtiff.6.dylib",
"name" : "libtiff.6.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5814054912,
"size" : 737280,
"uuid" : "52bfa0ae-b59c-3f4e-8240-645c1a930cc1",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libjpeg.62.4.0.dylib",
"name" : "libjpeg.62.4.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5815795712,
"size" : 557056,
"uuid" : "d015dfe5-7214-33d8-bf58-350dd32c4521",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libopenjp2.2.5.0.dylib",
"name" : "libopenjp2.2.5.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5809000448,
"size" : 131072,
"uuid" : "181a76df-c680-311c-aaa6-6eeeb8854129",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libz.1.3.dylib",
"name" : "libz.1.3.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5810876416,
"size" : 163840,
"uuid" : "51065206-aff2-32dd-93c5-d6d05a6f5e35",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libxcb.1.1.0.dylib",
"name" : "libxcb.1.1.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5813243904,
"size" : 245760,
"uuid" : "2f03407e-0f9b-3146-b009-33e0f793869a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/liblzma.5.dylib",
"name" : "liblzma.5.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5798039552,
"size" : 16384,
"uuid" : "adabaf7c-bc6a-3eab-8fbc-f3d8fdd20c3e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libXau.6.0.0.dylib",
"name" : "libXau.6.0.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5808128000,
"size" : 278528,
"uuid" : "60db207e-61fc-34bd-b11c-5cfa79eea3b7",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_decimal.cpython-311-darwin.so",
"name" : "_decimal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5789974528,
"size" : 16384,
"uuid" : "05968841-a7ae-3fcd-965c-8cc9e98e0a41",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_uuid.cpython-311-darwin.so",
"name" : "_uuid.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5786570752,
"size" : 32768,
"uuid" : "114c9a33-5736-3368-9202-8fbccd595edd",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_multibytecodec.cpython-311-darwin.so",
"name" : "_multibytecodec.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5806886912,
"size" : 1114112,
"uuid" : "aff872ee-6078-3910-b105-cc0517b99c83",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/unicodedata.cpython-311-darwin.so",
"name" : "unicodedata.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5803921408,
"size" : 147456,
"uuid" : "d1f6d0b1-d05a-3cc7-8c15-0d72176e5bcb",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md__mypyc.cpython-311-darwin.so",
"name" : "md__mypyc.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5309337600,
"size" : 16384,
"uuid" : "143bfd0a-fbaa-3849-bbaa-9d3b2d44c38f",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md.cpython-311-darwin.so",
"name" : "md.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5786468352,
"size" : 16384,
"uuid" : "5b50f1d9-e783-35c3-af9f-373c9c20ca6c",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_scproxy.cpython-311-darwin.so",
"name" : "_scproxy.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5786996736,
"size" : 98304,
"uuid" : "6e842008-31d0-3b82-a669-7322afd7ff18",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ssl.cpython-311-darwin.so",
"name" : "_ssl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5801566208,
"size" : 393216,
"uuid" : "107f31ab-cd24-32ef-bf63-11caf2bb17d4",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libssl.1.1.dylib",
"name" : "libssl.1.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5798486016,
"size" : 671744,
"uuid" : "99f6a3dc-9f85-3a3d-8ee5-4560b2308969",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/map\/_map.cpython-311-darwin.so",
"name" : "_map.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5786755072,
"size" : 49152,
"uuid" : "23a4fb23-e7ad-3f20-b2e5-b03ac4a6886e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cytmpl.cpython-311-darwin.so",
"name" : "cytmpl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5788299264,
"size" : 114688,
"uuid" : "60d71170-122f-3388-8946-9dc82b508714",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/tinyarray.cpython-311-darwin.so",
"name" : "tinyarray.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5794508800,
"size" : 360448,
"uuid" : "618ec769-18aa-37be-b55b-7e22658dae7d",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cymol.cpython-311-darwin.so",
"name" : "cymol.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5787398144,
"size" : 212992,
"uuid" : "a9496e39-cd88-3974-aafc-ff947534f4db",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/libmolc.dylib",
"name" : "libmolc.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5309120512,
"size" : 16384,
"uuid" : "d0ba4ed3-33c4-30c0-9fb8-0fcdd129cd4a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5790167040,
"size" : 1196032,
"uuid" : "146fbaf9-e571-37ea-8b91-518dd53f8d03",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libatomstruct.dylib",
"name" : "libatomstruct.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5078925312,
"size" : 32768,
"uuid" : "88a748b9-8a16-3bfc-ba85-a21a2e8d0dfe",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libelement.dylib",
"name" : "libelement.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5310050304,
"size" : 16384,
"uuid" : "3edbdaff-bca7-3dde-878a-d25fb44e9018",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libpyinstance.dylib",
"name" : "libpyinstance.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5308977152,
"size" : 32768,
"uuid" : "3b8f35f8-8f33-355e-a956-2cc5d0d96c32",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_csv.cpython-311-darwin.so",
"name" : "_csv.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5308874752,
"size" : 16384,
"uuid" : "1ab11cdf-f450-33b0-9055-0ec26fb654ee",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/grp.cpython-311-darwin.so",
"name" : "grp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5293711360,
"size" : 16384,
"uuid" : "e81a2322-9755-3b07-b226-bdaa988e1f3b",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_queue.cpython-311-darwin.so",
"name" : "_queue.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5293608960,
"size" : 16384,
"uuid" : "dc7e074f-ad98-3934-aa21-85389e14162e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_heapq.cpython-311-darwin.so",
"name" : "_heapq.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5293867008,
"size" : 49152,
"uuid" : "434ffdf5-a119-33d1-8f61-ae50457a3d17",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/array.cpython-311-darwin.so",
"name" : "array.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5292810240,
"size" : 65536,
"uuid" : "f5077020-095f-37b5-9841-9db3e15f3401",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_socket.cpython-311-darwin.so",
"name" : "_socket.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5309444096,
"size" : 180224,
"uuid" : "6f66f2fb-3370-3449-8c56-f3e0001309af",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/pyexpat.cpython-311-darwin.so",
"name" : "pyexpat.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5293064192,
"size" : 163840,
"uuid" : "a600179c-3d08-331c-ba58-5134eada0b7e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/styles\/libqmacstyle.dylib",
"name" : "libqmacstyle.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5294100480,
"CFBundleShortVersionString" : "1.0",
"CFBundleIdentifier" : "com.apple.AppleMetalOpenGLRenderer",
"size" : 458752,
"uuid" : "5e5b4ace-8819-3f49-a571-9b5ce9a35981",
"path" : "\/System\/Library\/Extensions\/AppleMetalOpenGLRenderer.bundle\/Contents\/MacOS\/AppleMetalOpenGLRenderer",
"name" : "AppleMetalOpenGLRenderer",
"CFBundleVersion" : "1"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5076062208,
"size" : 655360,
"uuid" : "4bf756eb-ff87-3f7f-8c98-b1eda6463b81",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib",
"name" : "libqcocoa.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5071413248,
"size" : 147456,
"uuid" : "5b8ebe3c-b7e4-3d4b-950c-fbb3a6870826",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtPrintSupport.abi3.so",
"name" : "QtPrintSupport.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4939468800,
"size" : 196608,
"uuid" : "87e0d2fb-a12c-38ca-b451-0bf21cc5d3ed",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineCore.abi3.so",
"name" : "QtWebEngineCore.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5073727488,
"size" : 458752,
"uuid" : "398c4f3b-e41e-3c01-8003-a594b5bc7701",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtNetwork.abi3.so",
"name" : "QtNetwork.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4535017472,
"size" : 32768,
"uuid" : "4125538e-4145-3504-8c4c-eecafa43ae17",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebChannel.abi3.so",
"name" : "QtWebChannel.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4936957952,
"size" : 65536,
"uuid" : "31527197-e015-3323-9b1e-d89a57f4122b",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineWidgets.abi3.so",
"name" : "QtWebEngineWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4534677504,
"size" : 81920,
"uuid" : "be9b28e7-5ac2-3b5d-9c1e-9cb326210166",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineWidgets.framework\/Versions\/A\/QtWebEngineWidgets",
"name" : "QtWebEngineWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4937723904,
"size" : 311296,
"uuid" : "4a13ff65-e0b7-341f-ac9d-bb5df92cb106",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPrintSupport.framework\/Versions\/A\/QtPrintSupport",
"name" : "QtPrintSupport"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5310189568,
"size" : 165052416,
"uuid" : "4aa1de3e-464c-340c-ab61-bcd39bfc7658",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
"name" : "QtWebEngineCore"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5135224832,
"size" : 4079616,
"uuid" : "e586fcd9-f4b6-3610-a075-167f962121c5",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuick.framework\/Versions\/A\/QtQuick",
"name" : "QtQuick"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4961435648,
"size" : 425984,
"uuid" : "3081c960-3da0-328b-8a70-a5cc2464636c",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGL.framework\/Versions\/A\/QtOpenGL",
"name" : "QtOpenGL"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4962832384,
"size" : 557056,
"uuid" : "b83cee7d-31bd-3264-99ce-afa3bf6692c5",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQmlModels.framework\/Versions\/A\/QtQmlModels",
"name" : "QtQmlModels"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4938776576,
"size" : 212992,
"uuid" : "795a00a0-138d-33c2-b582-5fd530b0c678",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebChannel.framework\/Versions\/A\/QtWebChannel",
"name" : "QtWebChannel"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5148397568,
"size" : 4079616,
"uuid" : "b140050b-a3f5-340b-a110-d1c01906c469",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQml.framework\/Versions\/A\/QtQml",
"name" : "QtQml"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5067743232,
"size" : 1261568,
"uuid" : "f402edbd-ac12-3e53-a2f4-e1d6932ab755",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtNetwork.framework\/Versions\/A\/QtNetwork",
"name" : "QtNetwork"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5066153984,
"size" : 491520,
"uuid" : "92f7a6de-79af-3b2f-8548-97e6556c3d1a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPositioning.framework\/Versions\/A\/QtPositioning",
"name" : "QtPositioning"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4937220096,
"size" : 81920,
"uuid" : "5b40aee8-76af-3deb-9c1b-90894adda30a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuickWidgets.framework\/Versions\/A\/QtQuickWidgets",
"name" : "QtQuickWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5128101888,
"size" : 1474560,
"uuid" : "86bbe80d-1a98-3bdb-b3c7-eee8ee9c9f07",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtGui.abi3.so",
"name" : "QtGui.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5079121920,
"size" : 2801664,
"uuid" : "babd94e3-ec19-3110-ab5b-11c39432d8c5",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWidgets.abi3.so",
"name" : "QtWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5092958208,
"size" : 4964352,
"uuid" : "f36760e5-d1e7-3a93-ae8c-1c3e55e3fc35",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets",
"name" : "QtWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5108236288,
"size" : 6979584,
"uuid" : "49d915f7-1c6d-3bbd-b96f-064260e7d998",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui",
"name" : "QtGui"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4933079040,
"size" : 573440,
"uuid" : "b80d4b57-c2b5-329a-8f0b-fa6745f22ad0",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtDBus.framework\/Versions\/A\/QtDBus",
"name" : "QtDBus"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4593799168,
"size" : 98304,
"uuid" : "17a32d1b-857d-3264-9bf6-9192cca7beb2",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/sip.cpython-311-darwin.so",
"name" : "sip.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4940615680,
"size" : 1589248,
"uuid" : "2be8100b-aa99-3117-95ff-0200ddc4032f",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtCore.abi3.so",
"name" : "QtCore.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4948369408,
"size" : 5259264,
"uuid" : "35b47b1c-6952-3d39-a5e7-711f3ca228f2",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore",
"name" : "QtCore"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4530155520,
"size" : 147456,
"uuid" : "2c719e3d-a419-3692-a578-2819f3d838f6",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/geometry\/_geometry.cpython-311-darwin.so",
"name" : "_geometry.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4492931072,
"size" : 16384,
"uuid" : "f68fca4b-5b9f-3986-91bf-f334ea86eead",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_opcode.cpython-311-darwin.so",
"name" : "_opcode.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4530659328,
"size" : 589824,
"uuid" : "c0f2136b-dde6-3728-92f0-57d0f47098f1",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_generator.cpython-311-darwin.so",
"name" : "_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4509982720,
"size" : 32768,
"uuid" : "c5fdf54a-82e5-35a0-a1f6-b53c802ba054",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_sfc64.cpython-311-darwin.so",
"name" : "_sfc64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4513755136,
"size" : 65536,
"uuid" : "aa144ed2-2766-3453-8242-ba1c7a85b8be",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_pcg64.cpython-311-darwin.so",
"name" : "_pcg64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4513501184,
"size" : 49152,
"uuid" : "295d00ff-9980-30db-b256-d03255300066",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_philox.cpython-311-darwin.so",
"name" : "_philox.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4512428032,
"size" : 65536,
"uuid" : "ef897ac7-3b50-30b3-90dd-67ed8d383413",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_mt19937.cpython-311-darwin.so",
"name" : "_mt19937.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4528406528,
"size" : 344064,
"uuid" : "28fb5ca7-d743-37b2-ada0-3e2f189421cc",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_bounded_integers.cpython-311-darwin.so",
"name" : "_bounded_integers.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4485402624,
"size" : 32768,
"uuid" : "350317ec-40ef-3786-8235-1f4a252e2bdf",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_blake2.cpython-311-darwin.so",
"name" : "_blake2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4485910528,
"size" : 32768,
"uuid" : "a5bc2ee2-086d-3ee9-8f96-3f9a55d29897",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_hashlib.cpython-311-darwin.so",
"name" : "_hashlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4582252544,
"size" : 2260992,
"uuid" : "8365300e-480c-3c4d-9ca6-539638c6704e",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libcrypto.1.1.dylib",
"name" : "libcrypto.1.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4512747520,
"size" : 196608,
"uuid" : "af2bead6-eea9-3b15-bc85-d48eae168228",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_common.cpython-311-darwin.so",
"name" : "_common.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4510257152,
"size" : 131072,
"uuid" : "6edf4fc8-aedc-3490-8d35-cea9228e02b1",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/bit_generator.cpython-311-darwin.so",
"name" : "bit_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4510842880,
"size" : 475136,
"uuid" : "540847df-9827-358d-99cf-88c3e8d2b851",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/mtrand.cpython-311-darwin.so",
"name" : "mtrand.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4485656576,
"size" : 81920,
"uuid" : "98efd1f3-eca0-387f-bcde-bddf9588e58b",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/fft\/_pocketfft_internal.cpython-311-darwin.so",
"name" : "_pocketfft_internal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4508454912,
"size" : 131072,
"uuid" : "b1cb953c-267f-3883-a539-bdcd0ec454a9",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/linalg\/_umath_linalg.cpython-311-darwin.so",
"name" : "_umath_linalg.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4508086272,
"size" : 81920,
"uuid" : "14c5a954-5a10-341d-930e-646b8183499c",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ctypes.cpython-311-darwin.so",
"name" : "_ctypes.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4491505664,
"size" : 81920,
"uuid" : "639e25c9-cea2-3d74-b5c2-849e946bcc2a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_tests.cpython-311-darwin.so",
"name" : "_multiarray_tests.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4485558272,
"size" : 16384,
"uuid" : "b62770cf-9a42-3e1b-8e2d-bc816ac0e837",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_contextvars.cpython-311-darwin.so",
"name" : "_contextvars.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4490067968,
"size" : 114688,
"uuid" : "6078491a-679a-38fb-99f9-93212e36864a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_pickle.cpython-311-darwin.so",
"name" : "_pickle.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4514426880,
"size" : 4931584,
"uuid" : "2b00c859-0a9f-3caf-b744-6c2225d80f2b",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_umath.cpython-311-darwin.so",
"name" : "_multiarray_umath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4595322880,
"size" : 64094208,
"uuid" : "9d768904-ac4b-327d-8126-cec11a08b966",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
"name" : "libopenblas64_.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4535197696,
"size" : 6565888,
"uuid" : "ae37c55e-f850-3cf7-86e4-bbd86809bc1d",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgfortran.5.dylib",
"name" : "libgfortran.5.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4484648960,
"size" : 319488,
"uuid" : "a1783d23-d187-3d92-ade7-2a80619e7485",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libquadmath.0.dylib",
"name" : "libquadmath.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4484292608,
"size" : 69632,
"uuid" : "6d59656e-a224-3642-80b9-ca07ca06e7c1",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgcc_s.1.1.dylib",
"name" : "libgcc_s.1.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4484136960,
"size" : 32768,
"uuid" : "c77a08cd-9e75-30d9-84cc-a69845c1c3ec",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_json.cpython-311-darwin.so",
"name" : "_json.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4484038656,
"size" : 16384,
"uuid" : "968f7d44-5fa3-31d9-8b22-92eb2206cc84",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/_arrays.cpython-311-darwin.so",
"name" : "_arrays.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4486127616,
"size" : 1130496,
"uuid" : "248383d9-36c6-3353-bbce-8dcc6b4ce8f7",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/lib\/libarrays.dylib",
"name" : "libarrays.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4482850816,
"size" : 32768,
"uuid" : "fab56287-4c23-300d-9887-cd45a5f7d3a7",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/select.cpython-311-darwin.so",
"name" : "select.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4482744320,
"size" : 16384,
"uuid" : "463cc059-41c7-330e-b20b-05cb0fdcad11",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_posixsubprocess.cpython-311-darwin.so",
"name" : "_posixsubprocess.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4482641920,
"size" : 16384,
"uuid" : "57e65ad6-c0ea-38d8-a056-41ad88aa2610",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/fcntl.cpython-311-darwin.so",
"name" : "fcntl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4482465792,
"size" : 32768,
"uuid" : "3cd6c3fb-9fe0-3b14-a169-570d6d72caba",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_struct.cpython-311-darwin.so",
"name" : "_struct.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4480626688,
"size" : 32768,
"uuid" : "e99b9ab9-9e03-3a38-ad6e-92f4c11a0ccd",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/binascii.cpython-311-darwin.so",
"name" : "binascii.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4480483328,
"size" : 32768,
"uuid" : "4857358d-b2e1-3822-aebb-06a8878b427d",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_sha512.cpython-311-darwin.so",
"name" : "_sha512.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4480372736,
"size" : 16384,
"uuid" : "e0374123-b7f9-38e5-b11f-58349af543a6",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_random.cpython-311-darwin.so",
"name" : "_random.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4480270336,
"size" : 16384,
"uuid" : "f286872f-bf81-34a6-87be-7d1797853da1",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bisect.cpython-311-darwin.so",
"name" : "_bisect.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4480847872,
"size" : 196608,
"uuid" : "c1616b8c-e517-3843-9946-07100812a3fa",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_lzma.cpython-311-darwin.so",
"name" : "_lzma.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4477280256,
"size" : 16384,
"uuid" : "5264b516-4f77-3211-bbb5-8720cd62f60a",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bz2.cpython-311-darwin.so",
"name" : "_bz2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4477116416,
"size" : 32768,
"uuid" : "2e40ac09-b4c6-3504-a3e2-a3913e730146",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/zlib.cpython-311-darwin.so",
"name" : "zlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4477018112,
"size" : 16384,
"uuid" : "aacd4a54-a0d7-3ca3-946c-75e1b46b8800",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_typing.cpython-311-darwin.so",
"name" : "_typing.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4478926848,
"size" : 65536,
"uuid" : "bce0a7e8-5fe0-3b22-a86a-efce56d39c06",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_datetime.cpython-311-darwin.so",
"name" : "_datetime.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4475756544,
"size" : 49152,
"uuid" : "e72184af-f88a-3d22-985d-ba7ae840d7bb",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/math.cpython-311-darwin.so",
"name" : "math.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4493037568,
"CFBundleShortVersionString" : "3.11.2, (c) 2001-2023 Python Software Foundation.",
"CFBundleIdentifier" : "org.python.python",
"size" : 4079616,
"uuid" : "24670b23-d78a-3eaa-bca8-22faf877f190",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python",
"name" : "Python",
"CFBundleVersion" : "3.11.2"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 140703127429120,
"size" : 196608,
"uuid" : "3ba12577-21cf-3270-ac4e-4a558236468e",
"path" : "\/usr\/libexec\/rosetta\/runtime",
"name" : "runtime"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4468449280,
"size" : 344064,
"uuid" : "79539977-1142-3b0b-9ecc-fac485d91d33",
"path" : "\/Library\/Apple\/*\/libRosettaRuntime",
"name" : "libRosettaRuntime"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4334092288,
"CFBundleShortVersionString" : "1.7.1",
"CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
"size" : 16384,
"uuid" : "194a3167-3db5-3029-8d22-1d742b826bb9",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
"name" : "ChimeraX",
"CFBundleVersion" : "1.7.1.0"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703497166848,
"size" : 241656,
"uuid" : "3e22fb41-20e3-3568-a00b-d8e901e333bf",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703497408512,
"size" : 49152,
"uuid" : "0f6c8ecc-a9bd-39c6-9f41-a8b9159201eb",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703495987200,
"size" : 557056,
"uuid" : "6f840a77-9f88-3da8-83ac-98e4892282d0",
"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703497609216,
"size" : 40960,
"uuid" : "20d7a65a-313d-3aa7-b0d4-a39261e1b00a",
"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703495684096,
"size" : 290814,
"uuid" : "c964889c-7792-333d-93f6-8f3e51a9f4c2",
"path" : "\/usr\/lib\/system\/libdispatch.dylib",
"name" : "libdispatch.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703513665536,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.Foundation",
"size" : 12812276,
"uuid" : "6589cc92-b39e-392c-808b-b20538f9312f",
"path" : "\/System\/Library\/Frameworks\/Foundation.framework\/Versions\/C\/Foundation",
"name" : "Foundation",
"CFBundleVersion" : "2303"
}
],
"sharedCache" : {
"base" : 140703492997120,
"size" : 21474836480,
"uuid" : "7fa563c2-7726-366b-b2f5-1c64013c6b55"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)\nWritable regions: Total=942.9M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=942.9M(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nActivity Tracing 256K 1 \nColorSync 236K 28 \nCoreAnimation 4K 1 \nCoreGraphics 8K 2 \nDispatch continuations 64.0M 1 \nFoundation 16K 1 \nKernel Alloc Once 8K 1 \nMALLOC 261.8M 65 \nMALLOC guard page 384K 24 \nMach message 8K 2 \nRosetta Arena 4096K 2 \nRosetta Generic 1384K 343 \nRosetta IndirectBranch 1024K 1 \nRosetta JIT 128.0M 1 \nRosetta Return Stack 680K 68 \nRosetta Thread Context 680K 68 \nSTACK GUARD 16K 4 \nStack 144.5M 34 \nStack Guard 56.1M 30 \nVM_ALLOCATE 162.2M 196 \nVM_ALLOCATE (reserved) 160.1M 14 reserved VM address space (unallocated)\n__CTF 824 1 \n__DATA 50.2M 707 \n__DATA_CONST 37.9M 361 \n__DATA_DIRTY 1640K 205 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__LINKEDIT 224.5M 144 \n__OBJC_RO 71.1M 1 \n__OBJC_RW 2170K 2 \n__TEXT 935.4M 714 \ndyld private memory 420K 4 \nmapped file 7.5G 1259 \nshared memory 808K 15 \nunshared pmap 10.4M 6 \n=========== ======= ======= \nTOTAL 9.7G 4308 \nTOTAL, minus reserved VM space 9.6G 4308 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "d097efae33555b54e1bac3548c20867e2da9d4d4",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "62745b8e85854550ad70b6e4",
"factorPackIds" : {
"SIRI_TTS_DEVICE_TRAINING" : "6539d7f333b9b7499c6f1b63"
},
"deploymentId" : 240000073
},
{
"rolloutId" : "654439cdafbf5b61207873a9",
"factorPackIds" : {
},
"deploymentId" : 240000004
}
],
"experiments" : [
{
"treatmentId" : "c47ab4cc-c9c3-4b5d-a87c-e2433ce02597",
"experimentId" : "6639bc6ba73d460582162323",
"deploymentId" : 400000006
},
{
"treatmentId" : "45f4e2a5-551b-4bc2-a2dc-19c244dda8f8",
"experimentId" : "6643969b3099cf28e049862f",
"deploymentId" : 400000007
}
]
},
"reportNotes" : [
"PC register does not match crashing frame (0x0 vs 0x7FF8A6532A78)"
]
}
Log:
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/AtCENH3-nuc_Tal1_EVADE.cxs
Log from Tue Jul 2 13:03:40 2024 Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_cc_hsch3_nuc_601/fold_cc_hsch3_nuc_601_model_0.cif
Chain information for fold_cc_hsch3_nuc_601_model_0.cif #1
---
Chain | Description
A B | .
C D | .
E F | .
G H | .
I | .
J | .
K | .
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_cc_hsch3_nuc_601/fold_cc_hsch3_nuc_601_model_1.cif
Chain information for fold_cc_hsch3_nuc_601_model_1.cif #2
---
Chain | Description
A B | .
C D | .
E F | .
G H | .
I | .
J | .
K | .
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_cc_hsch3_nuc_601/fold_cc_hsch3_nuc_601_model_2.cif
Chain information for fold_cc_hsch3_nuc_601_model_2.cif #3
---
Chain | Description
A B | .
C D | .
E F | .
G H | .
I | .
J | .
K | .
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_cc_hsch3_nuc_601/fold_cc_hsch3_nuc_601_model_3.cif
Chain information for fold_cc_hsch3_nuc_601_model_3.cif #4
---
Chain | Description
A B | .
C D | .
E F | .
G H | .
I | .
J | .
K | .
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_cc_hsch3_nuc_601/fold_cc_hsch3_nuc_601_model_4.cif
Chain information for fold_cc_hsch3_nuc_601_model_4.cif #5
---
Chain | Description
A B | .
C D | .
E F | .
G H | .
I | .
J | .
K | .
> hide #2 models
> hide #3 models
> hide #4 models
> hide #5 models
> ui tool show "Show Sequence Viewer"
> sequence chain #1/K
Alignment identifier is 1/K
> ui tool show "Show Sequence Viewer"
> sequence chain #1/K
Alignment identifier is 1/K
> ui tool show "Show Sequence Viewer"
> sequence chain #1/J
Alignment identifier is 1/J
> ui tool show "Show Sequence Viewer"
> sequence chain #1/I
Alignment identifier is 1/I
> select #1/I:426
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/I:426-537
908 atoms, 921 bonds, 112 residues, 1 model selected
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_cc_short_ch3_nuc_601/fold_cc_short_ch3_nuc_601_model_0.cif
Chain information for fold_cc_short_ch3_nuc_601_model_0.cif #6
---
Chain | Description
A B | .
C D | .
E F | .
G H | .
I | .
J | .
K | .
> ui tool show "Show Sequence Viewer"
> sequence chain #6/I
Alignment identifier is 6/I
> hide #1 models
> select #6/I:62-112
427 atoms, 433 bonds, 51 residues, 1 model selected
> select #6/I:57-112
461 atoms, 467 bonds, 56 residues, 1 model selected
> hide #6 models
> show #1 models
> select #1/I:537-538
15 atoms, 14 bonds, 2 residues, 1 model selected
> select #1/I:517-538
189 atoms, 193 bonds, 22 residues, 1 model selected
> select #1/I
7502 atoms, 7630 bonds, 943 residues, 1 model selected
> 1-425
Unknown command: 1-425
> select #1/I
7502 atoms, 7630 bonds, 943 residues, 1 model selected
> 1:425
Unknown command: 1:425
> select #1/I
7502 atoms, 7630 bonds, 943 residues, 1 model selected
> 1 425
Unknown command: 1 425
> select #1/I
7502 atoms, 7630 bonds, 943 residues, 1 model selected
> 425
Unknown command: 425
> select #1/I: 425
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #1/I: 1-425
3372 atoms, 3429 bonds, 425 residues, 1 model selected
> hide sel cartoons
> hide sel atoms
> select #1/I: 538--943
Nothing selected
> select #1/I: 538-943
3222 atoms, 3278 bonds, 406 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> select #1/I:517-538
189 atoms, 193 bonds, 22 residues, 1 model selected
> select #1/I:538
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #1/I:522-538
149 atoms, 153 bonds, 17 residues, 1 model selected
> select #1/E,F
2244 atoms, 2296 bonds, 278 residues, 1 model selected
> show #6 models
> ui tool show Matchmaker
> matchmaker #6/E to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_cc_short_ch3_nuc_601_model_0.cif, chain E (#6), sequence alignment score
= 601.8
RMSD between 97 pruned atom pairs is 0.254 angstroms; (across all 139 pairs:
15.946)
> ui tool show Matchmaker
> matchmaker #6/F to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_cc_short_ch3_nuc_601_model_0.cif, chain F (#6), sequence alignment score
= 601.8
RMSD between 97 pruned atom pairs is 0.258 angstroms; (across all 139 pairs:
16.298)
> matchmaker #6/F to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_cc_short_ch3_nuc_601_model_0.cif, chain F (#6), sequence alignment score
= 601.8
RMSD between 97 pruned atom pairs is 0.258 angstroms; (across all 139 pairs:
16.298)
> select clear
> select #1/I
7502 atoms, 7630 bonds, 943 residues, 1 model selected
> color sel red
> select #1/A-H
7742 atoms, 7864 bonds, 990 residues, 1 model selected
> color sel light gray
> select #1/E,F
2244 atoms, 2296 bonds, 278 residues, 1 model selected
> color sel light sea green
> select #1/J,K
6931 atoms, 7774 bonds, 338 residues, 1 model selected
> color sel light gray
> select #6/J,K
6931 atoms, 7774 bonds, 338 residues, 1 model selected
> color sel light gray
> select #6/A-H
7742 atoms, 7864 bonds, 990 residues, 1 model selected
> color sel light gray
> select #6/E,F
2244 atoms, 2296 bonds, 278 residues, 1 model selected
> color sel lime
> select #6/I
909 atoms, 922 bonds, 112 residues, 1 model selected
> color sel orange
> hide #6 models
> show #6 models
> select add #1
23084 atoms, 24190 bonds, 2383 residues, 2 models selected
> select add #6
37757 atoms, 39828 bonds, 3711 residues, 2 models selected
> show sel cartoons
> hide sel atoms
> select clear
> select #1/I: 1-425
3372 atoms, 3429 bonds, 425 residues, 1 model selected
> hide sel cartoons
> select #1/I: 538-943
3222 atoms, 3278 bonds, 406 residues, 1 model selected
> hide sel cartoons
> save
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/HsCENH3-nuc_CCfull_CC426-537.cxs
> open /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/6mup.pdb
6mup.pdb title:
Cenp-A nucleosome bound by two copies of cenp-C(Cd) and two copies cenp-N(NT)
[more info...]
Chain information for 6mup.pdb #7
---
Chain | Description | UniProt
A E | histone H3-like centromeric protein A | CENPA_HUMAN 38-139
B F | histone H4 | H4_HUMAN 8-101
C G | histone H2A/L | H2A1C_HUMAN 13-117
D H | histone H2B type 2-F | H2B2F_HUMAN 33-124
I | DNA (147-mer) |
J | DNA (147-mer) |
K L | centromere protein C | CENPC_HUMAN 518-537
M N | centromere protein N | CENPN_HUMAN 1-212
> open /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/6se6.pdb
6se6.pdb title:
CLASS2 : cenp-A nucleosome In complex with cenp-C central region [more
info...]
Chain information for 6se6.pdb #8
---
Chain | Description | UniProt
A E | histone H3-like centromeric protein A | CENPA_HUMAN 1-140
B F | histone H4 | H4_HUMAN 0-102
C G | histone H2A type 2-A | H2A2A_HUMAN 0-129
D H | histone H2B type 1-C/E/F/G/I | H2B1C_HUMAN 0-125
I | DNA (145-mer) |
J | DNA (145-mer) |
V | centromere protein C | CENPC_HUMAN 426-537
> select #7/A,E
1623 atoms, 1653 bonds, 203 residues, 1 model selected
> select add #7
15803 atoms, 16702 bonds, 2 pseudobonds, 1518 residues, 2 models selected
> select add #8
27871 atoms, 29582 bonds, 2 pseudobonds, 2579 residues, 3 models selected
> hide sel atoms
> show sel cartoons
> color (#8#!7 & sel) light gray
> select #7/A,E
1623 atoms, 1653 bonds, 203 residues, 1 model selected
> color sel forest green
> select #8/A,E
1624 atoms, 1654 bonds, 196 residues, 1 model selected
> color sel forest green
> ui tool show Matchmaker
> matchmaker #7/A to #6/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_short_ch3_nuc_601_model_0.cif, chain E (#6) with 6mup.pdb,
chain A (#7), sequence alignment score = 440.4
RMSD between 90 pruned atom pairs is 0.526 angstroms; (across all 102 pairs:
1.235)
> matchmaker #7/A to #6/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_short_ch3_nuc_601_model_0.cif, chain E (#6) with 6mup.pdb,
chain A (#7), sequence alignment score = 440.4
RMSD between 90 pruned atom pairs is 0.526 angstroms; (across all 102 pairs:
1.235)
> select #7/K,L
343 atoms, 351 bonds, 39 residues, 1 model selected
> color sel magenta
> select clear
> hide #8 models
> save
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/HsCENH3-nuc_CCfull_CC426-537.cxs
> hide #2-5 target m
> close #2-5
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_ch3_nuc_601/fold_ch3_nuc_601_model_0.cif
Chain information for fold_ch3_nuc_601_model_0.cif #2
---
Chain | Description
A B | .
C D | .
E F | .
G H | .
I | .
J | .
> ui tool show Matchmaker
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_hsch3_nuc_601/fold_hsch3_nuc_601_model_0.cif
Chain information for fold_hsch3_nuc_601_model_0.cif #3
---
Chain | Description
A B | .
C D | .
E F | .
G H | .
I | .
J | .
> hide #6 models
> hide #!7 models
> hide #1 models
> select #2,3
30170 atoms, 32104 bonds, 2784 residues, 2 models selected
> color sel light gray
> hide sel atoms
> show sel cartoons
> select #2,3/E,F
4996 atoms, 5098 bonds, 632 residues, 2 models selected
> color sel cyan
> show #1 models
> ui tool show Matchmaker
> matchmaker #2/E to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_ch3_nuc_601_model_0.cif, chain E (#2), sequence alignment score = 96.8
RMSD between 50 pruned atom pairs is 0.967 angstroms; (across all 89 pairs:
14.355)
> matchmaker #3/E to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_hsch3_nuc_601_model_0.cif, chain E (#3), sequence alignment score = 118.7
RMSD between 50 pruned atom pairs is 1.037 angstroms; (across all 90 pairs:
13.968)
> matchmaker #3/E to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_hsch3_nuc_601_model_0.cif, chain E (#3), sequence alignment score = 118.7
RMSD between 50 pruned atom pairs is 1.037 angstroms; (across all 90 pairs:
13.968)
> select add #3
17425 atoms, 18440 bonds, 1682 residues, 2 models selected
> select add #2
30170 atoms, 32104 bonds, 2784 residues, 2 models selected
> select subtract #3
15497 atoms, 16466 bonds, 1456 residues, 1 model selected
> select subtract #2
Nothing selected
> hide #2 models
> hide #3 models
> show #2 models
> hide #1 models
> show #1 models
> hide #2 models
> show #2 models
> ui tool show Matchmaker
> matchmaker #2/E to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_ch3_nuc_601_model_0.cif, chain E (#2), sequence alignment score = 233.6
RMSD between 86 pruned atom pairs is 0.451 angstroms; (across all 114 pairs:
17.583)
> matchmaker #2/F to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_ch3_nuc_601_model_0.cif, chain F (#2), sequence alignment score = 233.6
RMSD between 86 pruned atom pairs is 0.453 angstroms; (across all 114 pairs:
16.825)
> matchmaker #2/F to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_ch3_nuc_601_model_0.cif, chain F (#2), sequence alignment score = 233.6
RMSD between 86 pruned atom pairs is 0.453 angstroms; (across all 114 pairs:
16.825)
> show #3 models
> hide #1 models
> ui tool show Matchmaker
> matchmaker #3/F to #2/F pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_ch3_nuc_601_model_0.cif, chain F (#2) with
fold_hsch3_nuc_601_model_0.cif, chain F (#3), sequence alignment score = 320.9
RMSD between 80 pruned atom pairs is 0.461 angstroms; (across all 134 pairs:
35.917)
> matchmaker #3/F to #2/F pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_ch3_nuc_601_model_0.cif, chain F (#2) with
fold_hsch3_nuc_601_model_0.cif, chain F (#3), sequence alignment score = 320.9
RMSD between 80 pruned atom pairs is 0.461 angstroms; (across all 134 pairs:
35.917)
> hide #2 models
> show #1 models
> save
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/AtvsHsCENH3-nuc_CCfull_CC426-537.cxs
> hide #3 models
> show #3 models
> hide #1 models
> show #1 models
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_ch3_nuc_601_atcc_full/fold_ch3_nuc_601_atcc_full_model_0.cif
Chain information for fold_ch3_nuc_601_atcc_full_model_0.cif #4
---
Chain | Description
A B | .
C D | .
E F | .
G H | .
I | .
J | .
K | .
> select #4
21050 atoms, 22126 bonds, 2161 residues, 1 model selected
> color sel light gray
> select #4/E,f
2752 atoms, 2802 bonds, 354 residues, 1 model selected
> select #4/E,F
2752 atoms, 2802 bonds, 354 residues, 1 model selected
> color sel cyan
> select #4
21050 atoms, 22126 bonds, 2161 residues, 1 model selected
> hide sel atoms
> show sel cartoons
> select #4/K
3484 atoms, 3911 bonds, 169 residues, 1 model selected
> select #4/I
5553 atoms, 5660 bonds, 705 residues, 1 model selected
> color sel yellow
> ui tool show Matchmaker
> matchmaker #4/F to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_ch3_nuc_601_atcc_full_model_0.cif, chain F (#4), sequence alignment score
= 308
RMSD between 85 pruned atom pairs is 0.426 angstroms; (across all 135 pairs:
15.366)
> matchmaker #4/E to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_ch3_nuc_601_atcc_full_model_0.cif, chain E (#4), sequence alignment score
= 308
RMSD between 85 pruned atom pairs is 0.440 angstroms; (across all 135 pairs:
14.027)
> matchmaker #4/E to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_ch3_nuc_601_atcc_full_model_0.cif, chain E (#4), sequence alignment score
= 308
RMSD between 85 pruned atom pairs is 0.440 angstroms; (across all 135 pairs:
14.027)
> ui tool show Matchmaker
> matchmaker #4/E to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_ch3_nuc_601_atcc_full_model_0.cif, chain E (#4), sequence alignment score
= 308
RMSD between 85 pruned atom pairs is 0.440 angstroms; (across all 135 pairs:
14.027)
> matchmaker #3/F to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_hsch3_nuc_601_model_0.cif, chain F (#3), sequence alignment score = 604.8
RMSD between 8 pruned atom pairs is 1.210 angstroms; (across all 139 pairs:
24.773)
> matchmaker #3/E to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_hsch3_nuc_601_model_0.cif, chain E (#3), sequence alignment score = 604.8
RMSD between 8 pruned atom pairs is 1.222 angstroms; (across all 139 pairs:
24.430)
> matchmaker #3/E to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_hsch3_nuc_601_model_0.cif, chain E (#3), sequence alignment score = 604.8
RMSD between 8 pruned atom pairs is 1.222 angstroms; (across all 139 pairs:
24.430)
> hide #4 models
> select add #4
21050 atoms, 22126 bonds, 2161 residues, 1 model selected
> select subtract #4
Nothing selected
> ui tool show Matchmaker
> matchmaker #3/E to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_hsch3_nuc_601_model_0.cif, chain E (#3), sequence alignment score = 604.8
RMSD between 8 pruned atom pairs is 1.222 angstroms; (across all 139 pairs:
24.430)
> matchmaker #3/F to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_hsch3_nuc_601_model_0.cif, chain F (#3), sequence alignment score = 604.8
RMSD between 8 pruned atom pairs is 1.210 angstroms; (across all 139 pairs:
24.773)
> select #1/E
1122 atoms, 1148 bonds, 139 residues, 1 model selected
> select #3/E
1122 atoms, 1148 bonds, 139 residues, 1 model selected
> hide #3 models
> show #3 models
> hide #1 models
> show #1 models
> ui tool show Matchmaker
> matchmaker #3/E to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_hsch3_nuc_601_model_0.cif, chain E (#3), sequence alignment score = 604.8
RMSD between 8 pruned atom pairs is 1.222 angstroms; (across all 139 pairs:
24.430)
> matchmaker #3/E to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_hsch3_nuc_601_model_0.cif, chain E (#3), sequence alignment score = 604.8
RMSD between 8 pruned atom pairs is 1.222 angstroms; (across all 139 pairs:
24.430)
> ui tool show Matchmaker
> matchmaker #3/E to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_hsch3_nuc_601_model_0.cif, chain E (#3), sequence alignment score = 118.7
RMSD between 50 pruned atom pairs is 1.037 angstroms; (across all 90 pairs:
13.968)
> ui tool show Matchmaker
> matchmaker #3/F to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_hsch3_nuc_601_model_0.cif, chain F (#3), sequence alignment score = 118.7
RMSD between 49 pruned atom pairs is 1.012 angstroms; (across all 90 pairs:
13.942)
> matchmaker #3/E to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_hsch3_nuc_601_model_0.cif, chain E (#3), sequence alignment score = 604.8
RMSD between 8 pruned atom pairs is 1.222 angstroms; (across all 139 pairs:
24.430)
> matchmaker #3/F to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_hsch3_nuc_601_model_0.cif, chain F (#3), sequence alignment score = 604.8
RMSD between 8 pruned atom pairs is 1.210 angstroms; (across all 139 pairs:
24.773)
> matchmaker #3/A to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_hsch3_nuc_601_model_0.cif, chain A (#3), sequence alignment score = 578.1
RMSD between 106 pruned atom pairs is 0.202 angstroms; (across all 129 pairs:
4.154)
> matchmaker #3/B to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_hsch3_nuc_601_model_0.cif, chain B (#3), sequence alignment score = 578.1
RMSD between 106 pruned atom pairs is 0.202 angstroms; (across all 129 pairs:
4.327)
> matchmaker #3/B to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_hsch3_nuc_601_model_0.cif, chain B (#3), sequence alignment score = 578.1
RMSD between 106 pruned atom pairs is 0.202 angstroms; (across all 129 pairs:
4.327)
> select add #3
14673 atoms, 15638 bonds, 1328 residues, 1 model selected
> select subtract #3
Nothing selected
> show #4 models
> hide #3 models
> hide #1 models
> show #3 models
> hide #3 models
> show #1 models
> ui tool show Matchmaker
> matchmaker #4/E to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_ch3_nuc_601_atcc_full_model_0.cif, chain E (#4), sequence alignment score
= 103.6
RMSD between 48 pruned atom pairs is 0.938 angstroms; (across all 96 pairs:
18.224)
> matchmaker #4/E to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_ch3_nuc_601_atcc_full_model_0.cif, chain E (#4), sequence alignment score
= 103.6
RMSD between 48 pruned atom pairs is 0.938 angstroms; (across all 96 pairs:
18.224)
> ui tool show Matchmaker
> matchmaker #4/F to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_ch3_nuc_601_atcc_full_model_0.cif, chain F (#4), sequence alignment score
= 308
RMSD between 85 pruned atom pairs is 0.426 angstroms; (across all 135 pairs:
15.366)
> ui tool show Matchmaker
> matchmaker #4/E to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_ch3_nuc_601_atcc_full_model_0.cif, chain E (#4), sequence alignment score
= 308
RMSD between 85 pruned atom pairs is 0.440 angstroms; (across all 135 pairs:
14.027)
> matchmaker #4/E to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_ch3_nuc_601_atcc_full_model_0.cif, chain E (#4), sequence alignment score
= 308
RMSD between 85 pruned atom pairs is 0.440 angstroms; (across all 135 pairs:
14.027)
> ui tool show Matchmaker
> matchmaker #4/E to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_ch3_nuc_601_atcc_full_model_0.cif, chain E (#4), sequence alignment score
= 308
RMSD between 85 pruned atom pairs is 0.440 angstroms; (across all 135 pairs:
14.027)
> matchmaker #4/F to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_ch3_nuc_601_atcc_full_model_0.cif, chain F (#4), sequence alignment score
= 308
RMSD between 85 pruned atom pairs is 0.426 angstroms; (across all 135 pairs:
15.366)
> matchmaker #4/F to #1/E pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain E (#1) with
fold_ch3_nuc_601_atcc_full_model_0.cif, chain F (#4), sequence alignment score
= 308
RMSD between 85 pruned atom pairs is 0.426 angstroms; (across all 135 pairs:
15.366)
> save
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/AtvsHsCENH3-nuc_CCfull_CC426-537.cxs
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_tal1_dimer/fold_tal1_dimer_model_0.cif
Chain information for fold_tal1_dimer_model_0.cif #5
---
Chain | Description
A B | .
> close #5
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_tal1_integrase_long_dimer/fold_tal1_integrase_long_dimer_model_0.cif
Chain information for fold_tal1_integrase_long_dimer_model_0.cif #5
---
Chain | Description
A | .
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_evade_integrase_long_dimer/fold_evade_integrase_long_dimer_model_0.cif
Chain information for fold_evade_integrase_long_dimer_model_0.cif #9
---
Chain | Description
A | .
> hide #1 models
> hide #4 models
> ui tool show Matchmaker
> matchmaker #9/A to #5/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_tal1_integrase_long_dimer_model_0.cif, chain A (#5) with
fold_evade_integrase_long_dimer_model_0.cif, chain A (#9), sequence alignment
score = 2141.7
RMSD between 249 pruned atom pairs is 0.422 angstroms; (across all 510 pairs:
28.859)
> matchmaker #9/A to #5/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_tal1_integrase_long_dimer_model_0.cif, chain A (#5) with
fold_evade_integrase_long_dimer_model_0.cif, chain A (#9), sequence alignment
score = 2141.7
RMSD between 249 pruned atom pairs is 0.422 angstroms; (across all 510 pairs:
28.859)
> ui tool show "Show Sequence Viewer"
> sequence chain #5/A
Alignment identifier is 5/A
> select #5/A:55-56
16 atoms, 16 bonds, 2 residues, 1 model selected
> select #5/A:55-108
419 atoms, 432 bonds, 54 residues, 1 model selected
> select #5/A:56
10 atoms, 10 bonds, 1 residue, 1 model selected
> select #5/A:56-310
2057 atoms, 2111 bonds, 255 residues, 1 model selected
> select #5/A:6-56
381 atoms, 389 bonds, 51 residues, 1 model selected
> select #5/A:6-107
778 atoms, 799 bonds, 102 residues, 1 model selected
> select #5/A:56
10 atoms, 10 bonds, 1 residue, 1 model selected
> select #5/A:56-496
3542 atoms, 3633 bonds, 441 residues, 1 model selected
> select #5/A:481
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #5/A:481-490
88 atoms, 92 bonds, 10 residues, 1 model selected
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_ch3_nuc_601_tal1_int_long_dimer/fold_ch3_nuc_601_tal1_int_long_dimer_model_0.cif
Chain information for fold_ch3_nuc_601_tal1_int_long_dimer_model_0.cif #10
---
Chain | Description
A B | .
C D | .
E F | .
G H | .
I J | .
K | .
L | .
> select add #10
24217 atoms, 25406 bonds, 2550 residues, 2 models selected
> select add #5
28445 atoms, 29738 bonds, 3082 residues, 2 models selected
> select subtract #5
24129 atoms, 25314 bonds, 2540 residues, 1 model selected
> hide sel atoms
> show sel cartoons
> color sel light gray
> select #3/K
Nothing selected
> select #10/K
3447 atoms, 3863 bonds, 169 residues, 1 model selected
> select #10/I,J
8632 atoms, 8848 bonds, 1084 residues, 1 model selected
> color sel hot pink
> hide #9 models
> color sel cornflower blue
> select clear
> ui tool show "Show Sequence Viewer"
> sequence chain #10/I
Alignment identifier is 10/I
> select #10/I:481
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #10/I:481-490
88 atoms, 92 bonds, 10 residues, 1 model selected
> select #5/A:481
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #5/A:481-490
88 atoms, 92 bonds, 10 residues, 1 model selected
> select #10/I:481
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #10/I:481-490
88 atoms, 92 bonds, 10 residues, 1 model selected
> hide #5 models
> select #10/I:490
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #10/I:490
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #10/E,F
2752 atoms, 2802 bonds, 354 residues, 1 model selected
> color sel lime
> select clear
> show #5 models
> hide #10 models
> select #5/A:481
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #5/A:481-490
88 atoms, 92 bonds, 10 residues, 1 model selected
> show #10 models
> hide #5 models
> select add #5
4316 atoms, 4424 bonds, 542 residues, 1 model selected
> select subtract #5
Nothing selected
> select #10/I:481-482
18 atoms, 19 bonds, 2 residues, 1 model selected
> select #10/I:481-490
88 atoms, 92 bonds, 10 residues, 1 model selected
> show #5 models
> hide #10 models
> select #5/A:481
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #5/A:481-490
88 atoms, 92 bonds, 10 residues, 1 model selected
> show #10 models
> hide #5 models
> select add #5
4316 atoms, 4424 bonds, 542 residues, 1 model selected
> select subtract #5
Nothing selected
> select #10/I:481
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #10/I:481-490
88 atoms, 92 bonds, 10 residues, 1 model selected
> select #10/I:490-491
18 atoms, 17 bonds, 2 residues, 1 model selected
> select #10/I:490
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #10/I:490
11 atoms, 10 bonds, 1 residue, 1 model selected
> select add #10
24129 atoms, 25314 bonds, 2540 residues, 1 model selected
> select subtract #10
Nothing selected
> select
> #10/I:59-68,74-80,88-90,92-98,155-172,186-189,191-199,212-235,240-256,260-262,267-272,294-296,349-354,359-372,484-486,490-492,513-523,531-536,538-541
1335 atoms, 1350 bonds, 158 residues, 1 model selected
> select #10/I:490
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #10/I:490
11 atoms, 10 bonds, 1 residue, 1 model selected
> show #4 models
> hide #10 models
> select add #10
24129 atoms, 25314 bonds, 2540 residues, 1 model selected
> select subtract #10
Nothing selected
> show #1 models
> hide #4 models
> show #!7 models
> hide #!7 models
> show #4 models
> show #10 models
> hide #4 models
> hide #10 models
> hide #1 models
> show #5 models
> show #9 models
> show #10 models
> hide #9 models
> hide #5 models
> show #5 models
> hide #10 models
> ui tool show "Show Sequence Viewer"
> sequence chain #5/A
Alignment identifier is 5/A
> color #5 #9437ffff
> select #5/A:479-481
28 atoms, 28 bonds, 3 residues, 1 model selected
> select #5/A:479-481
28 atoms, 28 bonds, 3 residues, 1 model selected
> select #5/A:480
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #5/A:480-492
116 atoms, 121 bonds, 13 residues, 1 model selected
> color #5 #ff2600ff
> color #5 #531b93ff
> color #5 #9437ffff
> color #5 #d783ffff
> color sel red
> select clear
> show #10 models
> hide #5 models
> ui tool show "Show Sequence Viewer"
> sequence chain #10/I
Alignment identifier is 10/I
> select #10/I:480
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #10/I:480-492
116 atoms, 121 bonds, 13 residues, 1 model selected
> color sel red
> show #5 models
> show #1 models
> hide #1 models
> ui tool show Matchmaker
> matchmaker #10/A to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_ch3_nuc_601_tal1_int_long_dimer_model_0.cif, chain A (#10), sequence
alignment score = 436
RMSD between 102 pruned atom pairs is 0.214 angstroms; (across all 122 pairs:
4.250)
> matchmaker #10/A to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_ch3_nuc_601_tal1_int_long_dimer_model_0.cif, chain A (#10), sequence
alignment score = 436
RMSD between 102 pruned atom pairs is 0.214 angstroms; (across all 122 pairs:
4.250)
> show #1 models
> ui tool show Matchmaker
> matchmaker #10/E to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_ch3_nuc_601_tal1_int_long_dimer_model_0.cif, chain E (#10), sequence
alignment score = 93.8
RMSD between 50 pruned atom pairs is 0.979 angstroms; (across all 89 pairs:
14.792)
> matchmaker #10/B to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_ch3_nuc_601_tal1_int_long_dimer_model_0.cif, chain B (#10), sequence
alignment score = 436
RMSD between 102 pruned atom pairs is 0.226 angstroms; (across all 122 pairs:
4.155)
> matchmaker #10/B to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_ch3_nuc_601_tal1_int_long_dimer_model_0.cif, chain B (#10), sequence
alignment score = 436
RMSD between 102 pruned atom pairs is 0.226 angstroms; (across all 122 pairs:
4.155)
> hide #5 models
> select #10/I:490
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #10/I:490
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1/I
7502 atoms, 7630 bonds, 943 residues, 1 model selected
> color sel orange
> select #10/I
4316 atoms, 4424 bonds, 542 residues, 1 model selected
> ui tool show Matchmaker
> matchmaker #5/A to #10/I pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_ch3_nuc_601_tal1_int_long_dimer_model_0.cif, chain I (#10)
with fold_tal1_integrase_long_dimer_model_0.cif, chain A (#5), sequence
alignment score = 2729.1
RMSD between 235 pruned atom pairs is 0.452 angstroms; (across all 542 pairs:
53.406)
> matchmaker #5/A to #10/I pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_ch3_nuc_601_tal1_int_long_dimer_model_0.cif, chain I (#10)
with fold_tal1_integrase_long_dimer_model_0.cif, chain A (#5), sequence
alignment score = 2729.1
RMSD between 235 pruned atom pairs is 0.452 angstroms; (across all 542 pairs:
53.406)
> matchmaker #5/A to #10/I pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_ch3_nuc_601_tal1_int_long_dimer_model_0.cif, chain I (#10)
with fold_tal1_integrase_long_dimer_model_0.cif, chain A (#5), sequence
alignment score = 2729.1
RMSD between 235 pruned atom pairs is 0.452 angstroms; (across all 542 pairs:
53.406)
> hide #1 models
> show #5 models
> select clear
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_ch3_nuc_601_evade_int_long_dimer/fold_ch3_nuc_601_evade_int_long_dimer_model_0.cif
Chain information for fold_ch3_nuc_601_evade_int_long_dimer_model_0.cif #11
---
Chain | Description
A B | .
C D | .
E F | .
G H | .
I J | .
K | .
L | .
> select add #11
23779 atoms, 24954 bonds, 2476 residues, 1 model selected
> hide sel atoms
> show sel cartoons
> ui tool show Matchmaker
> matchmaker #11/A to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_ch3_nuc_601_evade_int_long_dimer_model_0.cif, chain A (#11), sequence
alignment score = 436
RMSD between 102 pruned atom pairs is 0.193 angstroms; (across all 122 pairs:
4.436)
> matchmaker #11/A to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_ch3_nuc_601_evade_int_long_dimer_model_0.cif, chain A (#11), sequence
alignment score = 436
RMSD between 102 pruned atom pairs is 0.193 angstroms; (across all 122 pairs:
4.436)
> select subtract #11
Nothing selected
> show #1 models
> select add #11
23779 atoms, 24954 bonds, 2476 residues, 1 model selected
> color sel light gray
> select #11/E,F
2752 atoms, 2802 bonds, 354 residues, 1 model selected
> color sel lime
> hide #1 models
> hide #11 models
> show #11 models
> hide #11 models
> show #11 models
> hide #11 models
> show #11 models
> hide #5 models
> hide #10 models
> select #11/I,J
8282 atoms, 8488 bonds, 1020 residues, 1 model selected
> color sel magenta
> select clear
> show #10 models
> select #11/I
4141 atoms, 4244 bonds, 510 residues, 1 model selected
> select #10/I
4316 atoms, 4424 bonds, 542 residues, 1 model selected
> select #10/J
4316 atoms, 4424 bonds, 542 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> hide sel cartoons
> select #11/J
4141 atoms, 4244 bonds, 510 residues, 1 model selected
> select #11/I
4141 atoms, 4244 bonds, 510 residues, 1 model selected
> hide sel cartoons
> select #11/J
4141 atoms, 4244 bonds, 510 residues, 1 model selected
> ui tool show "Show Sequence Viewer"
> sequence chain #11/J
Alignment identifier is 11/J
> color sel cyan
> select #11/J:455
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #11/J:455-459
49 atoms, 48 bonds, 5 residues, 1 model selected
> select #11/J:460
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #11/J:455-460
60 atoms, 60 bonds, 6 residues, 1 model selected
> color sel hot pink
> select #11/J:458
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #11/J:458
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 9 atom styles
> set bgColor white
> lighting soft
> lighting simple
> lighting soft
> lighting full
> lighting shadows false
> graphics silhouettes true
> lighting soft
> lighting simple
> lighting soft
> lighting full
> lighting soft
> lighting shadows true intensity 0.5
> lighting shadows false
> select #5/A:490
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #5/A:490
11 atoms, 10 bonds, 1 residue, 1 model selected
> style #10-11 stick
Changed 47908 atom styles
> show #10-11 atoms
> undo
> select #10/I:490
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #10/I:490
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #10/I:490
11 atoms, 10 bonds, 1 residue, 1 model selected
> style sel stick
Changed 11 atom styles
> show sel atoms
> lighting full
> select clear
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_ch3_nuc_601_tal1_int_long_dimer_r892k/fold_ch3_nuc_601_tal1_int_long_dimer_r892k_model_0.cif
Chain information for fold_ch3_nuc_601_tal1_int_long_dimer_r892k_model_0.cif
#12
---
Chain | Description
A B | .
C D | .
E F | .
G H | .
I J | .
K | .
L | .
> select add #12
24125 atoms, 25310 bonds, 2540 residues, 1 model selected
> hide sel atoms
> show sel cartoons
> color sel light gray
> ui tool show Matchmaker
> matchmaker #12/A to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_ch3_nuc_601_tal1_int_long_dimer_r892k_model_0.cif, chain A (#12),
sequence alignment score = 446.8
RMSD between 102 pruned atom pairs is 0.234 angstroms; (across all 122 pairs:
4.401)
> select subtract #12
Nothing selected
> select add #10
24129 atoms, 25314 bonds, 2540 residues, 1 model selected
> select subtract #10
Nothing selected
> select add #11
23779 atoms, 24954 bonds, 2476 residues, 1 model selected
> select subtract #11
Nothing selected
> hide #11 models
> select #12/J
4314 atoms, 4422 bonds, 542 residues, 1 model selected
> select #12/I
4314 atoms, 4422 bonds, 542 residues, 1 model selected
> select add #12
24125 atoms, 25310 bonds, 2540 residues, 1 model selected
> select subtract #12
Nothing selected
> select add #10
24129 atoms, 25314 bonds, 2540 residues, 1 model selected
> hide #10 models
> select subtract #10
Nothing selected
> select add #12
24125 atoms, 25310 bonds, 2540 residues, 1 model selected
> show #10 models
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_ch3_nuc_601_tal1_int_long_dimer_r892k/fold_ch3_nuc_601_tal1_int_long_dimer_r892k_model_1.cif
Chain information for fold_ch3_nuc_601_tal1_int_long_dimer_r892k_model_1.cif
#13
---
Chain | Description
A B | .
C D | .
E F | .
G H | .
I J | .
K | .
L | .
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_ch3_nuc_601_tal1_int_long_dimer_r892k/fold_ch3_nuc_601_tal1_int_long_dimer_r892k_model_2.cif
Chain information for fold_ch3_nuc_601_tal1_int_long_dimer_r892k_model_2.cif
#14
---
Chain | Description
A B | .
C D | .
E F | .
G H | .
I J | .
K | .
L | .
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_ch3_nuc_601_tal1_int_long_dimer_r892k/fold_ch3_nuc_601_tal1_int_long_dimer_r892k_model_3.cif
Chain information for fold_ch3_nuc_601_tal1_int_long_dimer_r892k_model_3.cif
#15
---
Chain | Description
A B | .
C D | .
E F | .
G H | .
I J | .
K | .
L | .
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_ch3_nuc_601_tal1_int_long_dimer_r892k/fold_ch3_nuc_601_tal1_int_long_dimer_r892k_model_4.cif
Chain information for fold_ch3_nuc_601_tal1_int_long_dimer_r892k_model_4.cif
#16
---
Chain | Description
A B | .
C D | .
E F | .
G H | .
I J | .
K | .
L | .
> select subtract #12
Nothing selected
> select add #13
24125 atoms, 25310 bonds, 2540 residues, 1 model selected
> select add #14
48250 atoms, 50620 bonds, 5080 residues, 2 models selected
> select add #15
72375 atoms, 75930 bonds, 7620 residues, 3 models selected
> select add #16
96500 atoms, 101240 bonds, 10160 residues, 4 models selected
> hide sel atoms
> show sel cartoons
> ui tool show Matchmaker
> matchmaker #13/A to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_ch3_nuc_601_tal1_int_long_dimer_r892k_model_1.cif, chain A (#13),
sequence alignment score = 437.8
RMSD between 102 pruned atom pairs is 0.222 angstroms; (across all 122 pairs:
4.382)
> matchmaker #14/A to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_ch3_nuc_601_tal1_int_long_dimer_r892k_model_2.cif, chain A (#14),
sequence alignment score = 434.2
RMSD between 102 pruned atom pairs is 0.229 angstroms; (across all 122 pairs:
4.676)
> matchmaker #15/A to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_ch3_nuc_601_tal1_int_long_dimer_r892k_model_3.cif, chain A (#15),
sequence alignment score = 423.4
RMSD between 102 pruned atom pairs is 0.282 angstroms; (across all 122 pairs:
4.897)
> matchmaker #16/A to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_ch3_nuc_601_tal1_int_long_dimer_r892k_model_4.cif, chain A (#16),
sequence alignment score = 436
RMSD between 102 pruned atom pairs is 0.224 angstroms; (across all 122 pairs:
4.142)
> matchmaker #16/A to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_ch3_nuc_601_tal1_int_long_dimer_r892k_model_4.cif, chain A (#16),
sequence alignment score = 436
RMSD between 102 pruned atom pairs is 0.224 angstroms; (across all 122 pairs:
4.142)
> hide #13 models
> hide #14 models
> hide #15 models
> select subtract #13
72375 atoms, 75930 bonds, 7620 residues, 3 models selected
> select subtract #14
48250 atoms, 50620 bonds, 5080 residues, 2 models selected
> select subtract #15
24125 atoms, 25310 bonds, 2540 residues, 1 model selected
> hide #16 models
> select subtract #16
Nothing selected
> show #16 models
> hide #12 models
> show #15 models
> hide #16 models
> ui tool show Matchmaker
> matchmaker #15/B to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_ch3_nuc_601_tal1_int_long_dimer_r892k_model_3.cif, chain B (#15),
sequence alignment score = 423.4
RMSD between 102 pruned atom pairs is 0.287 angstroms; (across all 122 pairs:
4.662)
> matchmaker #15/B to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_ch3_nuc_601_tal1_int_long_dimer_r892k_model_3.cif, chain B (#15),
sequence alignment score = 423.4
RMSD between 102 pruned atom pairs is 0.287 angstroms; (across all 122 pairs:
4.662)
> show #14 models
> hide #15 models
> show #13 models
> hide #14 models
> show #12 models
> hide #13 models
> show #11 models
> hide #12 models
> hide #11 models
> show #11 models
> hide #10 models
> show #10 models
> show #12 models
> hide #11 models
> show #11 models
> hide #12 models
> hide #10 models
> select #11/A
966 atoms, 978 bonds, 131 residues, 1 model selected
> select #11/A,B
1932 atoms, 1956 bonds, 262 residues, 1 model selected
> color sel red
> hide #11 models
> show #11 models
> show #9 models
> hide #9 models
> show #10 models
> hide #10 models
> hide #11 models
> show #10 models
> save
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/AtCENH3-nuc_Tal1_EVADE.cxs
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_h3_nuc_601_tal1_int_long_dimer/fold_h3_nuc_601_tal1_int_long_dimer_model_0.cif
Chain information for fold_h3_nuc_601_tal1_int_long_dimer_model_0.cif #17
---
Chain | Description
A B | .
C D | .
E F | .
G H | .
I J | .
K | .
L | .
> select add #12
26057 atoms, 27266 bonds, 2802 residues, 2 models selected
> select add #11
47904 atoms, 50264 bonds, 5016 residues, 2 models selected
> select subtract #12
23779 atoms, 24954 bonds, 2476 residues, 1 model selected
> select subtract #11
Nothing selected
> select add #17
23509 atoms, 24672 bonds, 2456 residues, 1 model selected
> hide sel atoms
> show sel cartoons
> color sel light gray
> select #11/I,J
8282 atoms, 8488 bonds, 1020 residues, 1 model selected
> close #13-16
> select #17/I,J
8632 atoms, 8848 bonds, 1084 residues, 1 model selected
> color sel hot pink
> select #17/E,F
2132 atoms, 2160 bonds, 270 residues, 1 model selected
> color sel cornflower blue
> ui tool show Matchmaker
No reference and/or match structure/chain chosen
> matchmaker #17/A to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_h3_nuc_601_tal1_int_long_dimer_model_0.cif, chain A (#17), sequence
alignment score = 441.4
RMSD between 102 pruned atom pairs is 0.238 angstroms; (across all 122 pairs:
4.370)
> select clear
> select #17/J
4316 atoms, 4424 bonds, 542 residues, 1 model selected
> select #17/I
4316 atoms, 4424 bonds, 542 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> select #17/B:112
8 atoms, 7 bonds, 1 residue, 1 model selected
> open
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/fold_h3_nuc_601_evade_int_long_dimer/fold_h3_nuc_601_evade_int_long_dimer_model_0.cif
Chain information for fold_h3_nuc_601_evade_int_long_dimer_model_0.cif #13
---
Chain | Description
A B | .
C D | .
E F | .
G H | .
I J | .
K | .
L | .
> select add #17
23509 atoms, 24672 bonds, 2456 residues, 1 model selected
> select add #13
46668 atoms, 48984 bonds, 4848 residues, 2 models selected
> select subtract #17
23159 atoms, 24312 bonds, 2392 residues, 1 model selected
> hide sel atoms
> show sel cartoons
> color sel light gray
> ui tool show Matchmaker
> matchmaker #13/A to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_cc_hsch3_nuc_601_model_0.cif, chain A (#1) with
fold_h3_nuc_601_evade_int_long_dimer_model_0.cif, chain A (#13), sequence
alignment score = 450.4
RMSD between 102 pruned atom pairs is 0.222 angstroms; (across all 122 pairs:
4.421)
> show #11 models
> hide #10 models
> hide #17 models
> select #13/I
4141 atoms, 4244 bonds, 510 residues, 1 model selected
> hide sel cartoons
> select #13/A,B
1932 atoms, 1956 bonds, 262 residues, 1 model selected
> hide #11 models
> show #11 models
> select add #13
23159 atoms, 24312 bonds, 2392 residues, 1 model selected
> select subtract #13
Nothing selected
> hide #11 models
> show #11 models
> hide #13 models
> select #13/A,B
1932 atoms, 1956 bonds, 262 residues, 1 model selected
> select #11/A,B
1932 atoms, 1956 bonds, 262 residues, 1 model selected
> color sel light gray
> select clear
> show #13 models
> select #11/E,F
2752 atoms, 2802 bonds, 354 residues, 1 model selected
> color sel cornflower blue
> show #17 models
> hide #11 models
> select add #11
23779 atoms, 24954 bonds, 2476 residues, 1 model selected
> select subtract #11
Nothing selected
> hide #17 models
> show #17 models
> show #11 models
> hide #11 models
> show #11 models
> hide #11 models
> select #11/E,F
2752 atoms, 2802 bonds, 354 residues, 1 model selected
> color #13,17 lime
> show #11 models
> hide #13 models
> hide #17 models
> undo
[Repeated 7 time(s)]
> hide #17 models
> hide #13 models
> show #13 models
> show #11 models
> hide #13 models
> show #10 models
> hide #11 models
> show #11 models
> select #11/E,F
2752 atoms, 2802 bonds, 354 residues, 1 model selected
> color sel lime
> hide #10 models
> hide #11 models
> show #11 models
> select clear
> show #12 models
> hide #11 models
> show #11 models
> hide #11 models
> show #13 models
> hide #12 models
> select #13/E,F
2132 atoms, 2160 bonds, 270 residues, 1 model selected
> color sel cornflower blue
> select #17/E,F
2132 atoms, 2160 bonds, 270 residues, 1 model selected
> color #13 cornflower blue
> show #17 models
> hide #17 models
> select #17/E,F
2132 atoms, 2160 bonds, 270 residues, 1 model selected
> show #17 models
> hide #13 models
> show #13 models
> hide #17 models
> select add #17
23509 atoms, 24672 bonds, 2456 residues, 1 model selected
> select subtract #17
Nothing selected
> select #13
23159 atoms, 24312 bonds, 2392 residues, 1 model selected
> color sel light gray
> select #13/E,F
2132 atoms, 2160 bonds, 270 residues, 1 model selected
> color sel cornflower blue
> select add #13
23159 atoms, 24312 bonds, 2392 residues, 1 model selected
> select subtract #13
Nothing selected
> show #17 models
> hide #13 models
> show #13 models
> hide #17 models
> select #13/I
4141 atoms, 4244 bonds, 510 residues, 1 model selected
> select #13/J
4141 atoms, 4244 bonds, 510 residues, 1 model selected
> color sel orange
> show #17 models
> select add #13
23159 atoms, 24312 bonds, 2392 residues, 1 model selected
> select subtract #13
Nothing selected
> hide #17 models
> show #17 models
> hide #17 models
> show #17 models
> show #12 models
> hide #13 models
> hide #12 models
> show #10 models
> show #13 models
> show #9 models
> hide #17 models
> hide #10 models
> hide #9 models
> show #11 models
> show #17 models
> hide #17 models
> save
> /Users/AkihisaOsakabe/Documents/研究/プロジェクト/塚原さん_Tal1/AF3/AtCENH3-nuc_Tal1_EVADE.cxs
——— End of log from Tue Jul 2 13:03:40 2024 ———
opened ChimeraX session
OpenGL version: 4.1 Metal - 88
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Model Number: Z11C000D7J/A
Chip: Unknown
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 10151.81.1
OS Loader Version: 10151.81.1
Software:
System Software Overview:
System Version: macOS 14.3.1 (23D60)
Kernel Version: Darwin 23.3.0
Time since boot: 2分 2秒
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL P2419HC:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Mirror: Off
Online: Yes
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2022.12.7
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6.1
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.14
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.4
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.3
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.1
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.2
funcparserlib: 2.0.0a0
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.7.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.4
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.6.0
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.2.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.4
urllib3: 2.1.0
wcwidth: 0.2.13
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
Change History (2)
comment:1 by , 15 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Qt fatal error: Failed to initialize graphics backend for OpenGL |
comment:2 by , 15 months ago
Note:
See TracTickets
for help on using tickets.
Although we see Qt fail to initialize OpenGL often on Linux, it is rare to see it on a Mac. No idea what causes the problem. The use had two displays. Mac M1 GPU. I'd guess it has something to do with the buggy Mac Qt handling of multiple displays.