![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 17 months ago
Closed 17 months ago
#15534 closed defect (can't reproduce)
Crash on exit
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-11.6.5-x86_64-i386-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [92477]
Path: /Applications/ChimeraX-1.7.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.7.1 (1.7.1.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [92477]
User ID: 501
Date/Time: 2024-07-01 14:00:29.610 +0100
OS Version: macOS 11.6.5 (20G527)
Report Version: 12
Bridge OS Version: 6.4 (19P4243)
Anonymous UUID: 4A201839-F4D6-8FFD-059A-578E0C09D337
Sleep/Wake UUID: A3396316-7058-4E6E-8553-1D9B099A706D
Time Awake Since Boot: 50000 seconds
Time Since Wake: 1300 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x000000e900000000
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0xe900000000:
CoreUI image data 1520d8000-1520f4000 [ 112K] r--/r-- SM=PRV
-->
MALLOC_NANO 600000000000-600008000000 [128.0M] rw-/rwx SM=SHM
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff208c391e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff208f25bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff207d6bd5 raise + 26
3 org.python.python 0x00000001101145d4 faulthandler_fatal_error + 388
4 libsystem_platform.dylib 0x00007fff20937d7d _sigtramp + 29
5 ??? 000000000000000000 0 + 0
6 libqcocoa.dylib 0x000000012eef189e 0x12eed7000 + 108702
7 QtCore 0x000000011f42969d QObject::~QObject() + 2157
8 libqcocoa.dylib 0x000000012eef16ce 0x12eed7000 + 108238
9 QtCore 0x000000011f42989f QObjectPrivate::deleteChildren() + 159
10 QtCore 0x000000011f429669 QObject::~QObject() + 2105
11 QtGui 0x000000012257c364 QGuiApplication::~QGuiApplication() + 676
12 QtWidgets 0x0000000121eefb4f QApplication::~QApplication() + 1183
13 QtWidgets.abi3.so 0x0000000121a0ffdc sipQApplication::~sipQApplication() + 44
14 QtCore.abi3.so 0x000000011f114655 cleanup_on_exit(_object*, _object*) + 53
15 org.python.python 0x000000010ffa8236 cfunction_vectorcall_NOARGS + 86
16 org.python.python 0x0000000110112802 atexit_callfuncs + 434
17 org.python.python 0x00000001100de397 Py_FinalizeEx + 87
18 org.python.python 0x000000011010cb3a Py_RunMain + 554
19 org.python.python 0x000000011010e17b pymain_main + 43
20 org.python.python 0x000000011010e14a Py_Main + 42
21 edu.ucsf.cgl.ChimeraX 0x000000010fe88d9a main + 122
22 libdyld.dylib 0x00007fff2090df3d start + 1
Thread 1:: Dispatch queue: NSPersistentUI Work
0 libobjc.A.dylib 0x00007fff207af249 bool objc::DenseMapBase, unsigned long, (anonymous namespace)::RefcountMapValuePurgeable, objc::DenseMapInfo >, objc::detail::DenseMapPair, unsigned long> >, DisguisedPtr, unsigned long, (anonymous namespace)::RefcountMapValuePurgeable, objc::DenseMapInfo >, objc::detail::DenseMapPair, unsigned long> >::LookupBucketFor >(DisguisedPtr const&, objc::detail::DenseMapPair, unsigned long>*&) + 91
1 libobjc.A.dylib 0x00007fff20792ab4 objc_object::sidetable_clearDeallocating() + 116
2 libobjc.A.dylib 0x00007fff2079266b objc_destructInstance + 151
3 libsystem_blocks.dylib 0x00007fff2062b60e _Block_release + 137
4 libsystem_blocks.dylib 0x00007fff2062b605 _Block_release + 128
5 libdispatch.dylib 0x00007fff20748806 _dispatch_client_callout + 8
6 libdispatch.dylib 0x00007fff2074e5ea _dispatch_lane_serial_drain + 606
7 libdispatch.dylib 0x00007fff2074f0ad _dispatch_lane_invoke + 366
8 libdispatch.dylib 0x00007fff20758c0d _dispatch_workloop_worker_thread + 811
9 libsystem_pthread.dylib 0x00007fff208ef45d _pthread_wqthread + 314
10 libsystem_pthread.dylib 0x00007fff208ee42f start_wqthread + 15
Thread 2:
0 libsystem_pthread.dylib 0x00007fff208ee420 start_wqthread + 0
Thread 3:
0 libsystem_pthread.dylib 0x00007fff208ee420 start_wqthread + 0
Thread 4:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff208bd2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208bd61c mach_msg + 60
2 QtWebEngineCore 0x0000000127399e26 0x12346b000 + 66252326
3 QtWebEngineCore 0x000000012735e7bf 0x12346b000 + 66009023
4 QtWebEngineCore 0x000000012735f26c 0x12346b000 + 66011756
5 QtWebEngineCore 0x000000012735ee6d 0x12346b000 + 66010733
6 QtWebEngineCore 0x0000000127392908 0x12346b000 + 66222344
7 libsystem_pthread.dylib 0x00007fff208f28fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff208ee443 thread_start + 15
Thread 5:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff208bd2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208bd61c mach_msg + 60
2 QtWebEngineCore 0x0000000127399e26 0x12346b000 + 66252326
3 QtWebEngineCore 0x000000012735e7bf 0x12346b000 + 66009023
4 QtWebEngineCore 0x000000012735f26c 0x12346b000 + 66011756
5 QtWebEngineCore 0x000000012735eddd 0x12346b000 + 66010589
6 QtWebEngineCore 0x0000000127392908 0x12346b000 + 66222344
7 libsystem_pthread.dylib 0x00007fff208f28fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff208ee443 thread_start + 15
Thread 6:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff208bd2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208bd61c mach_msg + 60
2 QtWebEngineCore 0x0000000127399e26 0x12346b000 + 66252326
3 QtWebEngineCore 0x000000012735e7bf 0x12346b000 + 66009023
4 QtWebEngineCore 0x000000012735f26c 0x12346b000 + 66011756
5 QtWebEngineCore 0x000000012735ee6d 0x12346b000 + 66010733
6 QtWebEngineCore 0x0000000127392908 0x12346b000 + 66222344
7 libsystem_pthread.dylib 0x00007fff208f28fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff208ee443 thread_start + 15
Thread 7:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff208bd2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208bd61c mach_msg + 60
2 QtWebEngineCore 0x0000000127399e26 0x12346b000 + 66252326
3 QtWebEngineCore 0x000000012735e7bf 0x12346b000 + 66009023
4 QtWebEngineCore 0x000000012735f26c 0x12346b000 + 66011756
5 QtWebEngineCore 0x000000012735ee6d 0x12346b000 + 66010733
6 QtWebEngineCore 0x0000000127392908 0x12346b000 + 66222344
7 libsystem_pthread.dylib 0x00007fff208f28fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff208ee443 thread_start + 15
Thread 8:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff208bd2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208bd61c mach_msg + 60
2 QtWebEngineCore 0x0000000127399e26 0x12346b000 + 66252326
3 QtWebEngineCore 0x000000012735e7bf 0x12346b000 + 66009023
4 QtWebEngineCore 0x000000012735ef9a 0x12346b000 + 66011034
5 QtWebEngineCore 0x000000012735ee6d 0x12346b000 + 66010733
6 QtWebEngineCore 0x0000000127392908 0x12346b000 + 66222344
7 libsystem_pthread.dylib 0x00007fff208f28fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff208ee443 thread_start + 15
Thread 9:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff208bd2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208bd61c mach_msg + 60
2 QtWebEngineCore 0x0000000127399e26 0x12346b000 + 66252326
3 QtWebEngineCore 0x000000012735e7bf 0x12346b000 + 66009023
4 QtWebEngineCore 0x000000012735f26c 0x12346b000 + 66011756
5 QtWebEngineCore 0x000000012735ee6d 0x12346b000 + 66010733
6 QtWebEngineCore 0x0000000127392908 0x12346b000 + 66222344
7 libsystem_pthread.dylib 0x00007fff208f28fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff208ee443 thread_start + 15
Thread 10:: NetworkService
0 libsystem_kernel.dylib 0x00007fff208c61c2 kevent64 + 10
1 QtWebEngineCore 0x00000001273cba2a 0x12346b000 + 66456106
2 QtWebEngineCore 0x00000001273cb927 0x12346b000 + 66455847
3 QtWebEngineCore 0x0000000127348a5c 0x12346b000 + 65919580
4 QtWebEngineCore 0x0000000127300998 0x12346b000 + 65624472
5 QtWebEngineCore 0x000000012736aeb8 0x12346b000 + 66059960
6 QtWebEngineCore 0x000000012736b04a 0x12346b000 + 66060362
7 QtWebEngineCore 0x0000000127392908 0x12346b000 + 66222344
8 libsystem_pthread.dylib 0x00007fff208f28fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff208ee443 thread_start + 15
Thread 11:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff208bd2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208bd61c mach_msg + 60
2 QtWebEngineCore 0x0000000127399e26 0x12346b000 + 66252326
3 QtWebEngineCore 0x0000000127399bef 0x12346b000 + 66251759
4 QtWebEngineCore 0x00000001272cf1c9 0x12346b000 + 65421769
5 QtWebEngineCore 0x0000000127348a5c 0x12346b000 + 65919580
6 QtWebEngineCore 0x0000000127300998 0x12346b000 + 65624472
7 QtWebEngineCore 0x000000012736aeb8 0x12346b000 + 66059960
8 QtWebEngineCore 0x000000012736b04a 0x12346b000 + 66060362
9 QtWebEngineCore 0x0000000127392908 0x12346b000 + 66222344
10 libsystem_pthread.dylib 0x00007fff208f28fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff208ee443 thread_start + 15
Thread 12:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff208bd2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208bd61c mach_msg + 60
2 QtWebEngineCore 0x0000000127399e26 0x12346b000 + 66252326
3 QtWebEngineCore 0x000000012735e7bf 0x12346b000 + 66009023
4 QtWebEngineCore 0x000000012735f26c 0x12346b000 + 66011756
5 QtWebEngineCore 0x000000012735eecd 0x12346b000 + 66010829
6 QtWebEngineCore 0x0000000127392908 0x12346b000 + 66222344
7 libsystem_pthread.dylib 0x00007fff208f28fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff208ee443 thread_start + 15
Thread 13:
0 libsystem_pthread.dylib 0x00007fff208ee420 start_wqthread + 0
Thread 14:
0 libsystem_pthread.dylib 0x00007fff208ee420 start_wqthread + 0
Thread 15:
0 libsystem_pthread.dylib 0x00007fff208ee420 start_wqthread + 0
Thread 16:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff208bd2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208bd61c mach_msg + 60
2 QtWebEngineCore 0x0000000127399e26 0x12346b000 + 66252326
3 QtWebEngineCore 0x000000012735e7bf 0x12346b000 + 66009023
4 QtWebEngineCore 0x000000012735f26c 0x12346b000 + 66011756
5 QtWebEngineCore 0x000000012735eddd 0x12346b000 + 66010589
6 QtWebEngineCore 0x0000000127392908 0x12346b000 + 66222344
7 libsystem_pthread.dylib 0x00007fff208f28fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff208ee443 thread_start + 15
Thread 17:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff208bd2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208bd61c mach_msg + 60
2 QtWebEngineCore 0x0000000127399e26 0x12346b000 + 66252326
3 QtWebEngineCore 0x0000000127399bef 0x12346b000 + 66251759
4 QtWebEngineCore 0x00000001272cf1c9 0x12346b000 + 65421769
5 QtWebEngineCore 0x0000000127348a5c 0x12346b000 + 65919580
6 QtWebEngineCore 0x0000000127300998 0x12346b000 + 65624472
7 QtWebEngineCore 0x000000012736aeb8 0x12346b000 + 66059960
8 QtWebEngineCore 0x000000012736b04a 0x12346b000 + 66060362
9 QtWebEngineCore 0x0000000127392908 0x12346b000 + 66222344
10 libsystem_pthread.dylib 0x00007fff208f28fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff208ee443 thread_start + 15
Thread 18:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff208bd2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208bd61c mach_msg + 60
2 QtWebEngineCore 0x0000000127399e26 0x12346b000 + 66252326
3 QtWebEngineCore 0x000000012735e7bf 0x12346b000 + 66009023
4 QtWebEngineCore 0x000000012735ef9a 0x12346b000 + 66011034
5 QtWebEngineCore 0x000000012735ee0d 0x12346b000 + 66010637
6 QtWebEngineCore 0x0000000127392908 0x12346b000 + 66222344
7 libsystem_pthread.dylib 0x00007fff208f28fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff208ee443 thread_start + 15
Thread 19:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff208bd2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208bd61c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff209ea55f __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff209e8c3f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff209e804c CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff23376e3a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff208f28fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff208ee443 thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000114dc7e00 rcx: 0x00007f9253ddd3a8 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x000000000000000b rbp: 0x00007f9253ddd3d0 rsp: 0x00007f9253ddd3a8
r8: 0x0000000000000002 r9: 0xcccccccccccccccd r10: 0x0000000114dc7e00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x0000000000000001 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff208c391e rfl: 0x0000000000000246 cr2: 0x00007f9253ddc840
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream:
08 00 00 00 ba 08 00 00-00 e8 54 b4 06 00 49 8d ..........T...I.
be 08 01 00 00 e8 f6 b7-06 00 49 8b 86 e0 00 00 ..........I.....
00 48 85 c0 74 66 f0 83-28 01 75 60 4d 8b be f0 .H..tf..(.u`M...
00 00 00 4d 85 ff 74 3e-4d 8b a6 e8 00 00 00 49 ...M..t>M......I
c1 e7 05 31 db eb 10 0f-1f 80 00 00 00 00 48 83 ...1..........H.
c3 20 49 39 df 74 1f 49-8b 04 1c 48 85 c0 74 ee . I9.t.I...H..t.
[f0]83 28 01 75 e8 49 8b-3c 1c 48 85 ff 74 df e8 ..(.u.I. /Applications/ChimeraX-1.7.1.app/Contents/MacOS/ChimeraX
0x10fe9c000 - 0x11027ffff +org.python.python (3.11.2, [c] 2001-2023 Python Software Foundation. - 3.11.2) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/Python
0x1107d9000 - 0x1107e4fff +math.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/math.cpython-311-darwin.so
0x1108f5000 - 0x110904fff +_datetime.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_datetime.cpython-311-darwin.so
0x110919000 - 0x11091cfff +_typing.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_typing.cpython-311-darwin.so
0x110a29000 - 0x110a30fff +zlib.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/zlib.cpython-311-darwin.so
0x110a41000 - 0x110a44fff +_bz2.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_bz2.cpython-311-darwin.so
0x110a51000 - 0x110a80fff +_lzma.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_lzma.cpython-311-darwin.so
0x110b95000 - 0x110b98fff +_bisect.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_bisect.cpython-311-darwin.so
0x110ba5000 - 0x110ba8fff +_random.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_random.cpython-311-darwin.so
0x110bb5000 - 0x110bbcfff +_sha512.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_sha512.cpython-311-darwin.so
0x110bc9000 - 0x110bd0fff +binascii.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/binascii.cpython-311-darwin.so
0x110bdd000 - 0x110be4fff +_struct.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_struct.cpython-311-darwin.so
0x110bf5000 - 0x110bf8fff +fcntl.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/fcntl.cpython-311-darwin.so
0x110c05000 - 0x110c08fff +_posixsubprocess.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_posixsubprocess.cpython-311-darwin.so
0x110c15000 - 0x110c1cfff +select.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/select.cpython-311-darwin.so
0x110d29000 - 0x110d2cfff +_arrays.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/_arrays.cpython-311-darwin.so
0x110d39000 - 0x110e4cfff +libarrays.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/lib/libarrays.dylib
0x110e79000 - 0x110e80fff +_json.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_json.cpython-311-darwin.so
0x110e8d000 - 0x111340fff +_multiarray_umath.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so
0x1114b9000 - 0x111afbfff +libgfortran.5.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libgfortran.5.dylib
0x111b36000 - 0x111b83fff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x111b8d000 - 0x111b9dfff +libgcc_s.1.1.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libgcc_s.1.1.dylib
0x113daf000 - 0x113dcafff +_pickle.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_pickle.cpython-311-darwin.so
0x113ddf000 - 0x113de2fff +_contextvars.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_contextvars.cpython-311-darwin.so
0x113def000 - 0x113e02fff +_multiarray_tests.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_tests.cpython-311-darwin.so
0x113f1b000 - 0x113f2efff +_ctypes.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_ctypes.cpython-311-darwin.so
0x113f47000 - 0x113f66fff +_umath_linalg.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/linalg/_umath_linalg.cpython-311-darwin.so
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0x7fff368c1000 - 0x7fff368d4fff com.apple.Engram (1.0 - 1) /System/Library/PrivateFrameworks/Engram.framework/Versions/A/Engram
0x7fff368d5000 - 0x7fff368f8fff com.apple.openscripting (1.7 - 190) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x7fff368f9000 - 0x7fff368fcfff com.apple.securityhi (9.0 - 55008) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x7fff368fd000 - 0x7fff36900fff com.apple.ink.framework (10.15 - 227) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x7fff36901000 - 0x7fff36904fff com.apple.CommonPanels (1.2.6 - 101) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels
0x7fff36905000 - 0x7fff3690cfff com.apple.ImageCapture (1711.5.2.1 - 1711.5.2.1) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x7fff3690d000 - 0x7fff37afdfff com.apple.JavaScriptCore (16611 - 16611.3.10.1.6) /System/Library/Frameworks/JavaScriptCore.framework/Versions/A/JavaScriptCore
0x7fff37b69000 - 0x7fff37c7bfff com.apple.AVFCapture (1.0 - 82.6) /System/Library/PrivateFrameworks/AVFCapture.framework/Versions/A/AVFCapture
0x7fff37c7c000 - 0x7fff37d0ffff com.apple.Quagga (47 - 47) /System/Library/PrivateFrameworks/Quagga.framework/Versions/A/Quagga
0x7fff37d10000 - 0x7fff37f5afff com.apple.CMCapture (1.0 - 82.6) /System/Library/PrivateFrameworks/CMCapture.framework/Versions/A/CMCapture
0x7fff382f6000 - 0x7fff383a3fff com.apple.accounts.AccountsDaemon (113 - 113) /System/Library/PrivateFrameworks/AccountsDaemon.framework/Versions/A/AccountsDaemon
0x7fff383a4000 - 0x7fff383a6fff com.apple.OAuth (25 - 25) /System/Library/PrivateFrameworks/OAuth.framework/Versions/A/OAuth
0x7fff38956000 - 0x7fff38965fff com.apple.HID (1.0 - 1) /System/Library/PrivateFrameworks/HID.framework/Versions/A/HID
0x7fff38966000 - 0x7fff38a8dfff com.apple.QuickLookUIFramework (5.0 - 928.5) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuickLookUI.framework/Versions/A/QuickLookUI
0x7fff38e60000 - 0x7fff38ee6fff com.apple.coredav (1.0.1 - 889) /System/Library/PrivateFrameworks/CoreDAV.framework/Versions/A/CoreDAV
0x7fff38ee7000 - 0x7fff38f3dfff com.apple.ExchangeWebServices (8.0 - 814.100.1) /System/Library/PrivateFrameworks/ExchangeWebServices.framework/Versions/A/ExchangeWebServices
0x7fff38f3e000 - 0x7fff38f7efff com.apple.MediaServices (1.0 - 1) /System/Library/PrivateFrameworks/MediaServices.framework/Versions/A/MediaServices
0x7fff3907a000 - 0x7fff3907afff com.apple.marco (10.0 - 1000) /System/Library/PrivateFrameworks/Marco.framework/Versions/A/Marco
0x7fff39260000 - 0x7fff39298fff com.apple.contacts.ContactsAutocomplete (1.0 - 1152.4) /System/Library/PrivateFrameworks/ContactsAutocomplete.framework/Versions/A/ContactsAutocomplete
0x7fff39299000 - 0x7fff392a5fff com.apple.KerberosHelper (4.0 - 1.0) /System/Library/PrivateFrameworks/KerberosHelper.framework/Versions/A/KerberosHelper
0x7fff392a6000 - 0x7fff392e9fff com.apple.ResponseKit (1.0 - 165.2) /System/Library/PrivateFrameworks/ResponseKit.framework/Versions/A/ResponseKit
0x7fff392ea000 - 0x7fff39309fff com.apple.proactive.support.ProactiveEventTracker (1.0 - 294.7) /System/Library/PrivateFrameworks/ProactiveEventTracker.framework/Versions/A/ProactiveEventTracker
0x7fff3972d000 - 0x7fff3972dfff com.apple.PhoneNumbers (1.0 - 1) /System/Library/PrivateFrameworks/PhoneNumbers.framework/Versions/A/PhoneNumbers
0x7fff3972e000 - 0x7fff39735fff com.apple.URLFormatting (146 - 146.22) /System/Library/PrivateFrameworks/URLFormatting.framework/Versions/A/URLFormatting
0x7fff3c197000 - 0x7fff3c1b9fff com.apple.quicklook.QuickLookSupport (1.0 - 135.5) /System/Library/PrivateFrameworks/QuickLookSupport.framework/Versions/A/QuickLookSupport
0x7fff3c1ba000 - 0x7fff3c251fff com.apple.AirPlaySync (1.0 - 2780.10.4.1) /System/Library/PrivateFrameworks/AirPlaySync.framework/Versions/A/AirPlaySync
0x7fff3cde2000 - 0x7fff3ce65fff com.apple.CorePDF (4.0 - 529) /System/Library/PrivateFrameworks/CorePDF.framework/Versions/A/CorePDF
0x7fff3ce66000 - 0x7fff3ce69fff com.apple.print.framework.Print (15 - 271) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x7fff3ce6a000 - 0x7fff3ce6dfff com.apple.Carbon (160 - 164) /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x7fff3cf66000 - 0x7fff3cf66fff com.apple.avfoundation (2.0 - 2020.10) /System/Library/Frameworks/AVFoundation.framework/Versions/A/AVFoundation
0x7fff3d120000 - 0x7fff3d13ffff com.apple.private.SystemPolicy (1.0 - 1) /System/Library/PrivateFrameworks/SystemPolicy.framework/Versions/A/SystemPolicy
0x7fff3d2e3000 - 0x7fff3d300fff com.apple.sidecar-core (1.0 - 231.0.1) /System/Library/PrivateFrameworks/SidecarCore.framework/Versions/A/SidecarCore
0x7fff3d301000 - 0x7fff3d304fff com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x7fff3d71c000 - 0x7fff3d722fff com.apple.FeatureFlagsSupport (1.0 - 28.60.1) /System/Library/PrivateFrameworks/FeatureFlagsSupport.framework/Versions/A/FeatureFlagsSupport
0x7fff3d893000 - 0x7fff3d8aafff com.apple.SafariServices.framework (16611 - 16611.3.10.1.6) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x7fff3da5d000 - 0x7fff3da68fff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x7fff3da7d000 - 0x7fff3da8ffff libmis.dylib (274.140.2) /usr/lib/libmis.dylib
0x7fff3da90000 - 0x7fff3da93fff com.apple.gpusw.GPURawCounter (20.3 - 12.0) /System/Library/PrivateFrameworks/GPURawCounter.framework/Versions/A/GPURawCounter
0x7fff3daac000 - 0x7fff3dc1bfff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x7fff3dc1c000 - 0x7fff3de77fff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3de78000 - 0x7fff3df8efff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3df8f000 - 0x7fff3dfa0fff com.apple.sidecar-ui (1.0 - 231.0.1) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3e5c3000 - 0x7fff3e625fff com.apple.ImageCaptureCore (1711.5.2.1 - 1711.5.2.1) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e626000 - 0x7fff3e64bfff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3e897000 - 0x7fff3e9f9fff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x7fff3e9fa000 - 0x7fff3ecdbfff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud
0x7fff3ed07000 - 0x7fff3ee33fff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3ee34000 - 0x7fff3f2d4fff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3f2d5000 - 0x7fff3f3bdfff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff4131c000 - 0x7fff4131ffff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff41744000 - 0x7fff41762fff libCGInterfaces.dylib (544.5) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff42de2000 - 0x7fff43b42fff libfaceCore.dylib (4.3.1) /System/Library/Frameworks/Vision.framework/libfaceCore.dylib
0x7fff43b43000 - 0x7fff43c56fff com.apple.TextRecognition (1.0 - 157) /System/Library/PrivateFrameworks/TextRecognition.framework/Versions/A/TextRecognition
0x7fff43c57000 - 0x7fff43c6ffff com.apple.Futhark (1.0 - 1) /System/Library/PrivateFrameworks/Futhark.framework/Versions/A/Futhark
0x7fff43cf1000 - 0x7fff43f64fff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff447cd000 - 0x7fff447d1fff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff46148000 - 0x7fff4614bfff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x7fff46837000 - 0x7fff46842fff libGPUSupportMercury.dylib (18.5.9) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff47e6d000 - 0x7fff47eaefff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff486fc000 - 0x7fff48717fff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff5193f000 - 0x7fff519defff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff51bce000 - 0x7fff51bd1fff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x7fff54266000 - 0x7fff5429cfff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff55893000 - 0x7fff55896fff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff64156000 - 0x7fff65145fff com.apple.driver.AppleIntelICLGraphicsGLDriver (16.5.9 - 16.0.5) /System/Library/Extensions/AppleIntelICLGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelICLGraphicsGLDriver
0x7fff655fe000 - 0x7fff65b2ffff com.apple.driver.AppleIntelICLGraphicsMTLDriver (16.5.9 - 16.0.5) /System/Library/Extensions/AppleIntelICLGraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelICLGraphicsMTLDriver
0x7fff6998f000 - 0x7fff69993fff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6bdda000 - 0x7fff6bde0fff libCoreFSCache.dylib (200.11) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6bde1000 - 0x7fff6bde5fff libCoreVMClient.dylib (200.11) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6bde6000 - 0x7fff6bdf5fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6bdf6000 - 0x7fff6bdf8fff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6bdf9000 - 0x7fff6be01fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6be02000 - 0x7fff6be35fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6be36000 - 0x7fff6be72fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6be73000 - 0x7fff6c006fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6c007000 - 0x7fff6c011fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6c012000 - 0x7fff6c18ffff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6c190000 - 0x7fff6c1b8fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d451000 - 0x7fff6d4a9fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e553000 - 0x7fff6e55afff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e55b000 - 0x7fff6e642fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6fbc4000 - 0x7fff6fbd6fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73ef8000 - 0x7fff73f03fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff74119000 - 0x7fff74131fff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff77a41000 - 0x7fff77a48fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=985.5M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=985.5M(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 128K 1
Activity Tracing 256K 1
CG backing stores 4320K 12
CG image 244K 15
CoreAnimation 80K 10
CoreGraphics 16K 3
CoreUI image data 2944K 23
Foundation 16K 1
Kernel Alloc Once 8K 1
MALLOC 294.7M 260
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 256K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
OpenGL GLSL 384K 4
STACK GUARD 76K 19
Stack 107.6M 20
Stack Guard 56.0M 1
VM_ALLOCATE 157.4M 104
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 37.8M 624
__DATA_CONST 27.3M 301
__DATA_DIRTY 1696K 208
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 530.8M 250
__OBJC_RO 70.3M 1
__OBJC_RW 2496K 2
__TEXT 666.7M 610
__UNICODE 588K 1
mapped file 265.9M 47
shared memory 772K 17
=========== ======= =======
TOTAL 2.6G 2549
TOTAL, minus reserved VM space 2.2G 2549
Log:
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/manigrasso/Desktop/Paper revisions/AF3_ScaC_full-
> length_dimer/fold_2024_06_12_18_39_model_0.cif"
Chain information for fold_2024_06_12_18_39_model_0.cif #1
---
Chain | Description
A B | .
OpenGL version: 4.1 INTEL-16.5.9
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine
OpenGL vendor: Intel Inc.
Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,2
Processor Name: Quad-Core Intel Core i7
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 512 KB
L3 Cache: 8 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 1731.100.130.0.0 (iBridge: 19.16.14243.0.0,0)
Software:
System Software Overview:
System Version: macOS 11.6.5 (20G527)
Kernel Version: Darwin 20.6.0
Time since boot: 9 days 14:02
Graphics/Displays:
Intel Iris Plus Graphics:
Chipset Model: Intel Iris Plus Graphics
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x8a53
Revision ID: 0x0007
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL U2421HE:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: BCR3Y13
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: Yes
Connection Type: Thunderbolt/DisplayPort
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2022.12.7
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6.1
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.14
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.4
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.3
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.1
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.2
funcparserlib: 2.0.0a0
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.7.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.4
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.6.0
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.2.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.4
urllib3: 2.1.0
wcwidth: 0.2.13
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
Change History (2)
comment:1 by , 17 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash on exit |
comment:2 by , 17 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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