Context Navigation

← Previous Ticket
Next Ticket →

#15624 closed defect (duplicate)

ui view fourup: ZeroDivisionError

Reported by:	chimerax-bug-report@…	Owned by:	Zach Pearson
Priority:	normal	Milestone:
Component:	Graphics	Version:
Keywords:		Cc:
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform:        macOS-13.6.7-arm64-arm-64bit
ChimeraX Version: 1.9.dev202405090425 (2024-05-09 04:25:54 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
notes | available bundle cache has not been initialized yet  
Database-fetch provider 'redo' in bundle Map specified unknown data format
'MTZ'  
  
UCSF ChimeraX version: 1.9.dev202405090425 (2024-05-09)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "/Users/bmcstudent/Downloads/6ln2 no ligand.pdb"

6ln2 no ligand.pdb title:  
Crystal structure of full length human GLP1 receptor In complex with fab
fragment (FAB7F38) [more info...]  
  
Chain information for 6ln2 no ligand.pdb #1  
---  
Chain | Description  
A | No description available  
  

> open "/Users/bmcstudent/Downloads/6ln2 no ligand.pdb"

6ln2 no ligand.pdb title:  
Crystal structure of full length human GLP1 receptor In complex with fab
fragment (FAB7F38) [more info...]  
  
Chain information for 6ln2 no ligand.pdb #2  
---  
Chain | Description  
A | No description available  
  

> show surfaces

> hide cartoons

> color bychain

> interfaces ~solvent

1 buried areas: #2/A #1/A 11762  
/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/networkx/drawing/layout.py:549: RuntimeWarning: divide by zero
encountered in divide  
"ijk,ij->ik", delta, (k * k / distance**2 - A * distance / k)  
/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/networkx/drawing/layout.py:549: RuntimeWarning: invalid value
encountered in divide  
"ijk,ij->ik", delta, (k * k / distance**2 - A * distance / k)  
posx and posy should be finite values  
[Repeated 3 time(s)]

> mlp

Map values for surface "6ln2 no ligand.pdb_A SES surface": minimum -27.34,
mean -1.55, maximum 23.41  
[Repeated 1 time(s)]To also show corresponding color key, enter the above mlp
command and add key true  

> coulombic

The following residues are missing heavy (non-hydrogen) atoms, which may
result in inaccurate electrostatics:  
6ln2 no ligand.pdb #1/A VAL 30  
6ln2 no ligand.pdb #1/A LEU 32  
6ln2 no ligand.pdb #1/A GLU 34  
6ln2 no ligand.pdb #1/A GLN 37  
6ln2 no ligand.pdb #1/A LYS 38  
6ln2 no ligand.pdb #1/A ARG 40  
6ln2 no ligand.pdb #1/A ARG 43  
6ln2 no ligand.pdb #1/A ARG 44  
6ln2 no ligand.pdb #1/A GLN 47  
6ln2 no ligand.pdb #1/A ARG 48  
6ln2 no ligand.pdb #1/A ASP 59  
6ln2 no ligand.pdb #1/A GLU 76  
6ln2 no ligand.pdb #1/A SER 79  
6ln2 no ligand.pdb #1/A SER 84  
6ln2 no ligand.pdb #1/A GLN 97  
6ln2 no ligand.pdb #1/A HIS 99  
6ln2 no ligand.pdb #1/A LYS 113  
6ln2 no ligand.pdb #1/A ASN 115  
6ln2 no ligand.pdb #1/A SER 116  
6ln2 no ligand.pdb #1/A SER 117  
6ln2 no ligand.pdb #1/A LEU 118  
6ln2 no ligand.pdb #1/A ARG 121  
6ln2 no ligand.pdb #1/A LEU 123  
6ln2 no ligand.pdb #1/A GLU 125  
6ln2 no ligand.pdb #1/A GLU 139  
6ln2 no ligand.pdb #1/A GLN 140  
6ln2 no ligand.pdb #1/A LEU 141  
6ln2 no ligand.pdb #1/A LEU 142  
6ln2 no ligand.pdb #1/A LEU 144  
6ln2 no ligand.pdb #1/A LEU 159  
6ln2 no ligand.pdb #1/A ARG 170  
6ln2 no ligand.pdb #1/A LEU 189  
6ln2 no ligand.pdb #1/A PHE 195  
6ln2 no ligand.pdb #1/A PHE 196  
6ln2 no ligand.pdb #1/A LYS 197  
6ln2 no ligand.pdb #1/A LYS 202  
6ln2 no ligand.pdb #1/A MET 204  
6ln2 no ligand.pdb #1/A TYR 205  
6ln2 no ligand.pdb #1/A SER 206  
6ln2 no ligand.pdb #1/A THR 207  
6ln2 no ligand.pdb #1/A GLN 210  
6ln2 no ligand.pdb #1/A GLN 211  
6ln2 no ligand.pdb #1/A HIS 212  
6ln2 no ligand.pdb #1/A LEU 217  
6ln2 no ligand.pdb #1/A LEU 218  
6ln2 no ligand.pdb #1/A TYR 220  
6ln2 no ligand.pdb #1/A GLN 221  
6ln2 no ligand.pdb #1/A ASP 222  
6ln2 no ligand.pdb #1/A LEU 224  
6ln2 no ligand.pdb #1/A LEU 228  
6ln2 no ligand.pdb #1/A PHE 257  
6ln2 no ligand.pdb #1/A GLU 262  
6ln2 no ligand.pdb #1/A GLN 263  
6ln2 no ligand.pdb #1/A ARG 267  
6ln2 no ligand.pdb #1/A ILE 272  
6ln2 no ligand.pdb #1/A LYS 288  
6ln2 no ligand.pdb #1/A GLU 292  
6ln2 no ligand.pdb #1/A GLU 294  
6ln2 no ligand.pdb #1/A THR 298  
6ln2 no ligand.pdb #1/A ARG 299  
6ln2 no ligand.pdb #1/A ASN 300  
6ln2 no ligand.pdb #1/A SER 301  
6ln2 no ligand.pdb #1/A ILE 308  
6ln2 no ligand.pdb #1/A ILE 309  
6ln2 no ligand.pdb #1/A ARG 310  
6ln2 no ligand.pdb #1/A ILE 330  
6ln2 no ligand.pdb #1/A LYS 334  
6ln2 no ligand.pdb #1/A LEU 339  
6ln2 no ligand.pdb #1/A LYS 342  
6ln2 no ligand.pdb #1/A ARG 348  
6ln2 no ligand.pdb #1/A LYS 351  
6ln2 no ligand.pdb #1/A ILE 357  
6ln2 no ligand.pdb #1/A THR 362  
6ln2 no ligand.pdb #1/A GLU 364  
6ln2 no ligand.pdb #1/A VAL 370  
6ln2 no ligand.pdb #1/A MET 371  
6ln2 no ligand.pdb #1/A ASP 372  
6ln2 no ligand.pdb #1/A GLU 373  
6ln2 no ligand.pdb #1/A HIS 374  
6ln2 no ligand.pdb #1/A LEU 379  
6ln2 no ligand.pdb #1/A ARG 380  
6ln2 no ligand.pdb #1/A PHE 381  
6ln2 no ligand.pdb #1/A LYS 383  
6ln2 no ligand.pdb #1/A PHE 385  
6ln2 no ligand.pdb #1/A MET 397  
6ln2 no ligand.pdb #1/A LEU 401  
6ln2 no ligand.pdb #1/A VAL 405  
6ln2 no ligand.pdb #1/A LEU 411  
6ln2 no ligand.pdb #1/A GLU 412  
6ln2 no ligand.pdb #1/A ARG 414  
6ln2 no ligand.pdb #1/A LYS 415  
6ln2 no ligand.pdb #1/A TRP 417  
6ln2 no ligand.pdb #1/A ARG 421  
6ln2 no ligand.pdb #1/A MET 1001  
6ln2 no ligand.pdb #1/A LYS 1002  
6ln2 no ligand.pdb #1/A LYS 1003  
6ln2 no ligand.pdb #1/A THR 1005  
6ln2 no ligand.pdb #1/A VAL 1008  
6ln2 no ligand.pdb #1/A GLU 1016  
6ln2 no ligand.pdb #1/A ASP 1017  
6ln2 no ligand.pdb #1/A LYS 1031  
6ln2 no ligand.pdb #1/A ASP 1035  
6ln2 no ligand.pdb #1/A ASP 1036  
6ln2 no ligand.pdb #1/A LYS 1046  
6ln2 no ligand.pdb #1/A ASP 1047  
6ln2 no ligand.pdb #1/A PHE 1049  
6ln2 no ligand.pdb #1/A GLU 1050  
6ln2 no ligand.pdb #1/A GLU 1051  
6ln2 no ligand.pdb #1/A GLU 1053  
6ln2 no ligand.pdb #2/A VAL 30  
6ln2 no ligand.pdb #2/A LEU 32  
6ln2 no ligand.pdb #2/A GLU 34  
6ln2 no ligand.pdb #2/A GLN 37  
6ln2 no ligand.pdb #2/A LYS 38  
6ln2 no ligand.pdb #2/A ARG 40  
6ln2 no ligand.pdb #2/A ARG 43  
6ln2 no ligand.pdb #2/A ARG 44  
6ln2 no ligand.pdb #2/A GLN 47  
6ln2 no ligand.pdb #2/A ARG 48  
6ln2 no ligand.pdb #2/A ASP 59  
6ln2 no ligand.pdb #2/A GLU 76  
6ln2 no ligand.pdb #2/A SER 79  
6ln2 no ligand.pdb #2/A SER 84  
6ln2 no ligand.pdb #2/A GLN 97  
6ln2 no ligand.pdb #2/A HIS 99  
6ln2 no ligand.pdb #2/A LYS 113  
6ln2 no ligand.pdb #2/A ASN 115  
6ln2 no ligand.pdb #2/A SER 116  
6ln2 no ligand.pdb #2/A SER 117  
6ln2 no ligand.pdb #2/A LEU 118  
6ln2 no ligand.pdb #2/A ARG 121  
6ln2 no ligand.pdb #2/A LEU 123  
6ln2 no ligand.pdb #2/A GLU 125  
6ln2 no ligand.pdb #2/A GLU 139  
6ln2 no ligand.pdb #2/A GLN 140  
6ln2 no ligand.pdb #2/A LEU 141  
6ln2 no ligand.pdb #2/A LEU 142  
6ln2 no ligand.pdb #2/A LEU 144  
6ln2 no ligand.pdb #2/A LEU 159  
6ln2 no ligand.pdb #2/A ARG 170  
6ln2 no ligand.pdb #2/A LEU 189  
6ln2 no ligand.pdb #2/A PHE 195  
6ln2 no ligand.pdb #2/A PHE 196  
6ln2 no ligand.pdb #2/A LYS 197  
6ln2 no ligand.pdb #2/A LYS 202  
6ln2 no ligand.pdb #2/A MET 204  
6ln2 no ligand.pdb #2/A TYR 205  
6ln2 no ligand.pdb #2/A SER 206  
6ln2 no ligand.pdb #2/A THR 207  
6ln2 no ligand.pdb #2/A GLN 210  
6ln2 no ligand.pdb #2/A GLN 211  
6ln2 no ligand.pdb #2/A HIS 212  
6ln2 no ligand.pdb #2/A LEU 217  
6ln2 no ligand.pdb #2/A LEU 218  
6ln2 no ligand.pdb #2/A TYR 220  
6ln2 no ligand.pdb #2/A GLN 221  
6ln2 no ligand.pdb #2/A ASP 222  
6ln2 no ligand.pdb #2/A LEU 224  
6ln2 no ligand.pdb #2/A LEU 228  
6ln2 no ligand.pdb #2/A PHE 257  
6ln2 no ligand.pdb #2/A GLU 262  
6ln2 no ligand.pdb #2/A GLN 263  
6ln2 no ligand.pdb #2/A ARG 267  
6ln2 no ligand.pdb #2/A ILE 272  
6ln2 no ligand.pdb #2/A LYS 288  
6ln2 no ligand.pdb #2/A GLU 292  
6ln2 no ligand.pdb #2/A GLU 294  
6ln2 no ligand.pdb #2/A THR 298  
6ln2 no ligand.pdb #2/A ARG 299  
6ln2 no ligand.pdb #2/A ASN 300  
6ln2 no ligand.pdb #2/A SER 301  
6ln2 no ligand.pdb #2/A ILE 308  
6ln2 no ligand.pdb #2/A ILE 309  
6ln2 no ligand.pdb #2/A ARG 310  
6ln2 no ligand.pdb #2/A ILE 330  
6ln2 no ligand.pdb #2/A LYS 334  
6ln2 no ligand.pdb #2/A LEU 339  
6ln2 no ligand.pdb #2/A LYS 342  
6ln2 no ligand.pdb #2/A ARG 348  
6ln2 no ligand.pdb #2/A LYS 351  
6ln2 no ligand.pdb #2/A ILE 357  
6ln2 no ligand.pdb #2/A THR 362  
6ln2 no ligand.pdb #2/A GLU 364  
6ln2 no ligand.pdb #2/A VAL 370  
6ln2 no ligand.pdb #2/A MET 371  
6ln2 no ligand.pdb #2/A ASP 372  
6ln2 no ligand.pdb #2/A GLU 373  
6ln2 no ligand.pdb #2/A HIS 374  
6ln2 no ligand.pdb #2/A LEU 379  
6ln2 no ligand.pdb #2/A ARG 380  
6ln2 no ligand.pdb #2/A PHE 381  
6ln2 no ligand.pdb #2/A LYS 383  
6ln2 no ligand.pdb #2/A PHE 385  
6ln2 no ligand.pdb #2/A MET 397  
6ln2 no ligand.pdb #2/A LEU 401  
6ln2 no ligand.pdb #2/A VAL 405  
6ln2 no ligand.pdb #2/A LEU 411  
6ln2 no ligand.pdb #2/A GLU 412  
6ln2 no ligand.pdb #2/A ARG 414  
6ln2 no ligand.pdb #2/A LYS 415  
6ln2 no ligand.pdb #2/A TRP 417  
6ln2 no ligand.pdb #2/A ARG 421  
6ln2 no ligand.pdb #2/A MET 1001  
6ln2 no ligand.pdb #2/A LYS 1002  
6ln2 no ligand.pdb #2/A LYS 1003  
6ln2 no ligand.pdb #2/A THR 1005  
6ln2 no ligand.pdb #2/A VAL 1008  
6ln2 no ligand.pdb #2/A GLU 1016  
6ln2 no ligand.pdb #2/A ASP 1017  
6ln2 no ligand.pdb #2/A LYS 1031  
6ln2 no ligand.pdb #2/A ASP 1035  
6ln2 no ligand.pdb #2/A ASP 1036  
6ln2 no ligand.pdb #2/A LYS 1046  
6ln2 no ligand.pdb #2/A ASP 1047  
6ln2 no ligand.pdb #2/A PHE 1049  
6ln2 no ligand.pdb #2/A GLU 1050  
6ln2 no ligand.pdb #2/A GLU 1051  
6ln2 no ligand.pdb #2/A GLU 1053  

Using Amber 20 recommended default charges and atom types for standard
residues  
[Repeated 1 time(s)]Coulombic values for 6ln2 no ligand.pdb_A SES surface
#1.2: minimum, -22.22, mean -3.96, maximum 6.74  
Coulombic values for 6ln2 no ligand.pdb_A SES surface #2.2: minimum, -22.22,
mean -3.96, maximum 6.74  
To also show corresponding color key, enter the above coulombic command and
add key true  

> color bypolymer

> select main

6356 atoms, 6562 bonds, 4 pseudobonds, 874 residues, 4 models selected  

> select sequence 1-23

Nothing selected  

> select sequence "1 - 23"

Nothing selected  

> select clear

> ui tool show "Show Sequence Viewer"

> sequence chain #1/A #2/A

Alignment identifier is 1  
posx and posy should be finite values  
[Repeated 1 time(s)]

> select clear

[Repeated 1 time(s)]

> select #1/A:29-138 #2/A:29-138

1542 atoms, 1608 bonds, 2 pseudobonds, 208 residues, 4 models selected  
1 [ID: 1] region 2 chains [1-115] RMSD: 0.000  
  

> select clear

[Repeated 1 time(s)]

> select #1/A:29-70 #2/A:29-70

628 atoms, 648 bonds, 84 residues, 2 models selected  
1 [ID: 1] region 2 chains [1-47] RMSD: 0.000  
  

> select clear

> ui tool show "Check Waters"

> hbonds interModel false reveal true restrict any name "water H-bonds"

680 hydrogen bonds found  
posx and posy should be finite values  
[Repeated 1 time(s)]

> ~select

Nothing selected  
posx and posy should be finite values  
[Repeated 1 time(s)]Alignment identifier is 2  
posx and posy should be finite values  
[Repeated 1 time(s)]

> select clear

[Repeated 1 time(s)]posx and posy should be finite values  
[Repeated 1 time(s)]

> select clear

> select #1/A:29-135 #2/A:29-135

1498 atoms, 1562 bonds, 126 pseudobonds, 202 residues, 6 models selected  
2 [ID: 2] region 2 chains [1-112] RMSD: 0.000  
  

> select clear

> select sequence 24-139

Nothing selected  

> select sequence 24

Nothing selected  

> select sequence "24;139"

Nothing selected  

> select: 24-139

Unknown command: select: 24-139  

> select :24-139

1552 atoms, 1618 bonds, 136 pseudobonds, 210 residues, 6 models selected  

> color (#!1-2 & sel) cornflower blue

> label (#!1-2 & sel) attribute name

> ui tool show "Change Chain IDs"

> ui tool show "Build Structure"

> ui tool show Segmentations

> ui view fourup

Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1116, in
mouseMoveEvent  
self.moveSegmentationPuck(x, y, record_seg=False)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1034, in
moveSegmentationPuck  
rel_top, rel_bottom, rel_left, rel_right = self.mousePercentOffsetsFromEdges(  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 993, in
mousePercentOffsetsFromEdges  
percent_offset_from_bottom = (  
^  
ZeroDivisionError: float division by zero  
  
ZeroDivisionError: float division by zero  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 993, in
mousePercentOffsetsFromEdges  
percent_offset_from_bottom = (  
^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1116, in
mouseMoveEvent  
self.moveSegmentationPuck(x, y, record_seg=False)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1034, in
moveSegmentationPuck  
rel_top, rel_bottom, rel_left, rel_right = self.mousePercentOffsetsFromEdges(  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 993, in
mousePercentOffsetsFromEdges  
percent_offset_from_bottom = (  
^  
ZeroDivisionError: float division by zero  
  
ZeroDivisionError: float division by zero  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 993, in
mousePercentOffsetsFromEdges  
percent_offset_from_bottom = (  
^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1116, in
mouseMoveEvent  
self.moveSegmentationPuck(x, y, record_seg=False)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1034, in
moveSegmentationPuck  
rel_top, rel_bottom, rel_left, rel_right = self.mousePercentOffsetsFromEdges(  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 993, in
mousePercentOffsetsFromEdges  
percent_offset_from_bottom = (  
^  
ZeroDivisionError: float division by zero  
  
ZeroDivisionError: float division by zero  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 993, in
mousePercentOffsetsFromEdges  
percent_offset_from_bottom = (  
^  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M2 Pro
OpenGL vendor: Apple

Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: Mac mini
      Model Identifier: Mac14,12
      Model Number: Z170000FXLL/A
      Chip: Apple M2 Pro
      Total Number of Cores: 12 (8 performance and 4 efficiency)
      Memory: 32 GB
      System Firmware Version: 10151.121.1
      OS Loader Version: 8422.141.2.700.1

Software:

    System Software Overview:

      System Version: macOS 13.6.7 (22G720)
      Kernel Version: Darwin 22.6.0
      Time since boot: 14 days, 4 hours, 53 minutes

Graphics/Displays:

    Apple M2 Pro:

      Chipset Model: Apple M2 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 19
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        DELL U2723QE:
          Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported


Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 2.4.1
    Babel: 2.15.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.17
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.57
    ChimeraX-AtomicLibrary: 14.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.4.6
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.12.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.3
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.4
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.9.dev202405090425
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DiffPlot: 1.0
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.9
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.3
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.15
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.4
    ChimeraX-PDB: 2.7.5
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.4.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 1.3.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.16.4
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.39
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.2.1
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.1
    decorator: 5.1.1
    docutils: 0.20.1
    executing: 2.0.1
    filelock: 3.13.4
    fonttools: 4.51.0
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.11.0
    html2text: 2024.2.26
    idna: 3.7
    ihm: 1.0
    imagecodecs: 2024.1.1
    imagesize: 1.4.1
    ipykernel: 6.29.2
    ipython: 8.21.0
    ipywidgets: 8.1.2
    jedi: 0.19.1
    jinja2: 3.1.4
    jupyter-client: 8.6.0
    jupyter-core: 5.7.2
    jupyterlab-widgets: 3.0.10
    kiwisolver: 1.4.5
    line-profiler: 4.1.2
    lxml: 5.2.1
    lz4: 4.3.3
    MarkupSafe: 2.1.5
    matplotlib: 3.8.4
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.0
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.3.0
    pip: 24.0
    pkginfo: 1.10.0
    platformdirs: 4.2.1
    prompt-toolkit: 3.0.43
    psutil: 5.9.8
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pygments: 2.17.2
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.1.2
    pyproject-hooks: 1.1.0
    PyQt6-commercial: 6.6.1
    PyQt6-Qt6: 6.6.3
    PyQt6-sip: 13.6.0
    PyQt6-WebEngine-commercial: 6.6.0
    PyQt6-WebEngine-Qt6: 6.6.3
    python-dateutil: 2.9.0.post0
    pytz: 2024.1
    pyzmq: 26.0.3
    qtconsole: 5.5.1
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.13.0
    setuptools: 69.5.1
    setuptools-scm: 8.0.4
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 7.2.6
    sphinx-autodoc-typehints: 2.0.1
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2024.1.30
    tinyarray: 1.2.4
    tornado: 6.4
    traitlets: 5.14.2
    typing-extensions: 4.11.0
    tzdata: 2024.1
    urllib3: 2.2.1
    wcwidth: 0.2.13
    webcolors: 1.13
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.10

Change History (2)

comment:1 by Eric Pettersen, 16 months ago

Component:	Unassigned → Graphics
Owner:	set to Zach Pearson
Platform:	→ all
Project:	→ ChimeraX
Status:	new → assigned
Summary:	ChimeraX bug report submission → ui view fourup: ZeroDivisionError

comment:2 by Zach Pearson, 16 months ago

Resolution:	→ duplicate
Status:	assigned → closed

Duplicate of https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/15343 which was reported on a later daily build. Moving to today's daily build should resolve the traceback; however, the segmentations tool is useless without an underlying volume, so perhaps it should refuse to open if there isn't one.

Note: See TracTickets for help on using tickets.

Download in other formats: