![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 16 months ago
Closed 16 months ago
#15495 closed defect (duplicate)
Crash changing Mac display configuration, Intel/AMD graphics
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.5-x86_64-i386-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00007ff8552ddfc0 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, psutil._psutil_osx, psutil._psutil_posix, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, lxml._elementpath, lxml.etree, PIL._imagingmath (total: 61)
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{
"uptime" : 240000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro16,4",
"coalitionID" : 65785,
"osVersion" : {
"train" : "macOS 14.5",
"build" : "23F79",
"releaseType" : "User"
},
"captureTime" : "2024-06-21 10:25:52.3542 -0700",
"codeSigningMonitor" : 0,
"incident" : "677F08B9-2D2F-4894-A707-260B4B719577",
"pid" : 25614,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-06-20 08:44:03.4748 -0700",
"procStartAbsTime" : 235967578150390,
"procExitAbsTime" : 243037102748770,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"5D004C07-5BF3-5193-AB2D-5EA9DA1BBC3B","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "90C601D6-E2AF-13F9-3B6B-9674AF1163BB",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"wakeTime" : 5,
"bridgeVersion" : {"build":"21P5077","train":"8.5"},
"sleepWakeUUID" : "3F92181F-A7E7-45A5-93CB-CF720C39FC8F",
"sip" : "enabled",
"vmRegionInfo" : "0 is not in any region. Bytes before following region: 4553572352\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 10f6a0000-10f6a4000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000000","rawCodes":[1,0],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000000"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":25614},
"vmregioninfo" : "0 is not in any region. Bytes before following region: 4553572352\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 10f6a0000-10f6a4000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
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"faultingThread" : 0,
"threads" : 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"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python",
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===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/kirk/Downloads/022124_VW-DNA-Cryo-EM.cxs format session
Opened run_class001.mrc as #1, grid size 80,80,80, pixel 3.74, shown at level
0.0612, step 1, values float32
opened ChimeraX session
> open /Users/kirk/Downloads/HD_DNA_trimmed_to40.pdb format pdb
Chain information for HD_DNA_trimmed_to40.pdb #4
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
> hide #3 models
Drag select of 1 run_class001.mrc , 11 residues, 15 shapes
> select subtract #1
264 atoms, 12 residues, 1 model selected
> ui tool show "Fit in Map"
> select add #4
3666 atoms, 4072 bonds, 164 residues, 1 model selected
> ui mousemode right "translate selected models"
> ui mousemode right "move picked models"
> view matrix models #4,1,0,0,-17.779,0,1,0,-47.527,0,0,1,-27.89
> fitmap #4 inMap #1
Fit molecule HD_DNA_trimmed_to40.pdb (#4) to map run_class001.mrc (#1) using
3666 atoms
average map value = 0.06768, steps = 88
shifted from previous position = 31.3
rotated from previous position = 13.2 degrees
atoms outside contour = 1500, contour level = 0.061193
Position of HD_DNA_trimmed_to40.pdb (#4) relative to run_class001.mrc (#1)
coordinates:
Matrix rotation and translation
0.99241543 -0.07652344 0.09620691 -32.98968350
0.05641488 0.97885149 0.19663956 -60.67025953
-0.10921982 -0.18972063 0.97574439 25.69343570
Axis -0.84482473 0.44919116 0.29068622
Axis point 0.00000000 80.12802268 335.62582877
Rotation angle (degrees) 13.21836536
Shift along axis 8.08668357
> view matrix models
> #4,0.99242,-0.076523,0.096207,-31.072,0.056415,0.97885,0.19664,-60.047,-0.10922,-0.18972,0.97574,24.227
> undo
> select subtract #4
Nothing selected
> select add #4
3666 atoms, 4072 bonds, 164 residues, 1 model selected
> view matrix models
> #4,0.99242,-0.076523,0.096207,-28.177,0.056415,0.97885,0.19664,-135.27,-0.10922,-0.18972,0.97574,53.12
> ui mousemode right "rotate selected models"
> view matrix models
> #4,0.93972,-0.31904,0.12307,22.871,0.28831,0.93273,0.21654,-171.78,-0.18388,-0.168,0.96849,63.711
> view matrix models
> #4,0.94499,-0.31904,0.072101,30.617,0.29787,0.93048,0.21324,-172.52,-0.13512,-0.18004,0.97434,56.196
> view matrix models
> #4,0.96238,-0.26793,-0.045122,37.763,0.27139,0.93987,0.20737,-168.51,-0.013153,-0.21181,0.97722,39.719
> view matrix models
> #4,-0.98086,-0.19103,-0.037677,372.82,0.14892,-0.86068,0.48688,148.27,-0.12544,0.47195,0.87265,-52.175
> ui mousemode right "translate selected models"
> view matrix models
> #4,-0.98086,-0.19103,-0.037677,391.07,0.14892,-0.86068,0.48688,202.61,-0.12544,0.47195,0.87265,-64.07
> fitmap #4 inMap #1
Fit molecule HD_DNA_trimmed_to40.pdb (#4) to map run_class001.mrc (#1) using
3666 atoms
average map value = 0.0687, steps = 92
shifted from previous position = 27
rotated from previous position = 18.5 degrees
atoms outside contour = 1461, contour level = 0.061193
Position of HD_DNA_trimmed_to40.pdb (#4) relative to run_class001.mrc (#1)
coordinates:
Matrix rotation and translation
-0.99231953 0.10326630 -0.06810310 320.74791749
-0.12087175 -0.92652162 0.35629722 293.65221966
-0.02630550 0.36179243 0.93188747 -83.70333927
Axis 0.02409459 -0.18326799 -0.98276767
Axis point 168.08706751 145.32120457 0.00000000
Rotation angle (degrees) 173.45208356
Shift along axis 36.17217313
> view matrix models
> #4,-0.99232,0.10327,-0.068103,320.9,-0.12087,-0.92652,0.3563,294,-0.026305,0.36179,0.93189,-81.444
> undo
> select subtract #4
Nothing selected
> vop gaussian #1 sdev 11.2
Opened run_class001.mrc gaussian as #5, grid size 80,80,80, pixel 3.74, shown
at step 1, values float32
> undo
> volume #1 level 0.1396
> volume #5 level 0.0302
> hide #!5 models
> close session
> open /Users/kirk/Downloads/022124_VW-DNA-Cryo-EM.cxs format session
Opened run_class001.mrc as #1, grid size 80,80,80, pixel 3.74, shown at level
0.0612, step 1, values float32
opened ChimeraX session
> open /Users/kirk/Downloads/HD_DNA_trimmed_to40.pdb format pdb
Chain information for HD_DNA_trimmed_to40.pdb #4
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
> fitmap #2 inMap #1
Fit molecule 6yhr (#2) to map run_class001.mrc (#1) using 4499 atoms
average map value = 0.06708, steps = 60
shifted from previous position = 0.0092
rotated from previous position = 0.0436 degrees
atoms outside contour = 2090, contour level = 0.061193
Position of 6yhr (#2) relative to run_class001.mrc (#1) coordinates:
Matrix rotation and translation
0.78650093 -0.59455935 -0.16707922 156.44741680
0.61197227 0.78668976 0.08129678 176.37889701
0.08310375 -0.16618784 0.98258606 105.49593164
Axis -0.19691570 -0.19906268 0.95999909
Axis point -181.23197224 339.92053988 0.00000000
Rotation angle (degrees) 38.93235843
Shift along axis 35.35858987
> select add #4
8165 atoms, 8467 bonds, 7 pseudobonds, 903 residues, 4 models selected
> select subtract #2
3666 atoms, 4072 bonds, 164 residues, 1 model selected
> fitmap #4 inMap #1
Fit molecule HD_DNA_trimmed_to40.pdb (#4) to map run_class001.mrc (#1) using
3666 atoms
average map value = 0.06768, steps = 120
shifted from previous position = 50.3
rotated from previous position = 13.2 degrees
atoms outside contour = 1497, contour level = 0.061193
Position of HD_DNA_trimmed_to40.pdb (#4) relative to run_class001.mrc (#1)
coordinates:
Matrix rotation and translation
0.99243498 -0.07661208 0.09593430 -32.95071053
0.05660644 0.97893360 0.19617523 -60.65555053
-0.10894270 -0.18926066 0.97586469 25.54670639
Axis -0.84455059 0.44891771 0.29190271
Axis point 0.00000000 79.68453251 336.18339009
Rotation angle (degrees) 13.19052887
Shift along axis 8.05634397
> hide #3 models
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/kirk/Library/CloudStorage/Box-Box/Tyra-
> Research/Discovery/Crystallography/Tyra_Solved_Structures/%First_Look_Structure_Data/TARDIS/ForKirk/PDB_Dep_Prep/FGFR1_TYRX-0347_structurefiles/pdb_extract_coord_24523.cif
Summary of feedback from opening /Users/kirk/Library/CloudStorage/Box-
Box/Tyra-
Research/Discovery/Crystallography/Tyra_Solved_Structures/%First_Look_Structure_Data/TARDIS/ForKirk/PDB_Dep_Prep/FGFR1_TYRX-0347_structurefiles/pdb_extract_coord_24523.cif
---
warnings | Unknown polymer entity '1' on line 33
Unknown polymer entity '4' on line 314
Atom CL1 is not in the residue template for 300 /A:1002
Atom CL1 is not in the residue template for 300 /B:902
Skipping chem_comp category: Missing column 'type' on line 10269
notes | Fetching CCD EDO from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/O/EDO/EDO.cif
Fetching CCD 300 from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/0/300/300.cif
pdb_extract_coord_24523.cif title:
FGFR1 with TYRA-300 [more info...]
Non-standard residues in pdb_extract_coord_24523.cif #1
---
300 — (300)
ALA — (ALA)
ARG — (ARG)
ASN — (ASN)
ASP — (ASP)
CYS — (CYS)
EDO — (EDO)
GLN — (GLN)
GLU — (GLU)
GLY — (GLY)
HIS — (HIS)
ILE — (ILE)
LEU — (LEU)
LYS — (LYS)
MET — (MET)
PHE — (PHE)
PRO — (PRO)
SER — (SER)
SO4 — (SO4)
THR — (THR)
TRP — (TRP)
TYR — (TYR)
VAL — (VAL)
12 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
OpenGL version: 4.1 ATI-5.5.17
OpenGL renderer: AMD Radeon Pro 5600M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,4
Processor Name: 8-Core Intel Core i9
Processor Speed: 2.4 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 256 KB
L3 Cache: 16 MB
Hyper-Threading Technology: Enabled
Memory: 64 GB
System Firmware Version: 2022.100.22.0.0 (iBridge: 21.16.5077.0.0,0)
OS Loader Version: 580~2215
Software:
System Software Overview:
System Version: macOS 14.5 (23F79)
Kernel Version: Darwin 23.5.0
Time since boot: 15 days, 12 hours, 57 minutes
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0002
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
AMD Radeon Pro 5600M:
Chipset Model: AMD Radeon Pro 5600M
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 8 GB
Vendor: AMD (0x1002)
Device ID: 0x7360
Revision ID: 0x0041
ROM Revision: 113-D3000E-192
VBIOS Version: 113-D3000A0U-015
Option ROM Version: 113-D3000A0U-015
EFI Driver Version: 01.A1.192
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 3072 x 1920 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 16 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash changing Mac display configuration |
comment:2 by , 16 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
| Summary: | Crash changing Mac display configuration → Crash changing Mac display configuration, Intel/AMD graphics |
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Qt 6.6 bug, crash unplugging or plugging in external display. I put in a work-around before the 1.8 release but it does not fix every case.