![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 16 months ago
Closed 16 months ago
#15513 closed defect (nonchimerax)
Graphics crash, macOS 10.15.7, NVIDIA GeForce GT 755M
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.15.7-x86_64-i386-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x00000001171b4dc0 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, chimerax.pdb_lib._load_libs, chimerax.surface._surface, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PIL._imagingmath, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, chimerax.atom_search.ast, chimerax.chem_group._chem_group (total: 58)
Process: ChimeraX [2710]
Path: /Applications/ChimeraX-1.7.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.7.1 (1.7.1.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [2710]
User ID: 501
Date/Time: 2024-06-27 12:14:10.900 -0700
OS Version: Mac OS X 10.15.7 (19H2026)
Report Version: 12
Anonymous UUID: F66860F7-5B2D-2BD9-4672-F65DD99BEBDE
Sleep/Wake UUID: C5765A29-D242-4F72-B841-DE445FAF5090
Time Awake Since Boot: 20000 seconds
Time Since Wake: 65 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics kernel error: 0xfffffffd
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff725b132a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff7266de60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff724c893e raise + 26
3 org.python.python 0x000000010b2b75d4 faulthandler_fatal_error + 388
4 libsystem_platform.dylib 0x00007fff726625fd _sigtramp + 29
5 ??? 000000000000000000 0 + 0
6 libsystem_c.dylib 0x00007fff72538808 abort + 120
7 libGPUSupportMercury.dylib 0x00007fff5a50c0a5 gpusGenerateCrashLog.cold.1 + 95
8 libGPUSupportMercury.dylib 0x00007fff5a50318f gpusGenerateCrashLog + 89
9 com.apple.GeForceGLDriver 0x00007fff33dbec4f 0x7fff33abd000 + 3152975
10 libGPUSupportMercury.dylib 0x00007fff5a50455b gpusSubmitDataBuffers + 164
11 com.apple.GeForceGLDriver 0x00007fff33dba11c 0x7fff33abd000 + 3133724
12 com.apple.GeForceGLDriver 0x00007fff33db9e05 0x7fff33abd000 + 3132933
13 com.apple.AppKit 0x00007fff370d3e99 -[NSIOAccelSurface frontBuffer] + 1708
14 com.apple.AppKit 0x00007fff370d2b68 -[NSCGLSurface flushRect:] + 966
15 com.apple.AppKit 0x00007fff370d2724 NSCGLSurfaceFlush + 214
16 GLEngine 0x00007fff43d4b92a glSwap_Exec + 186
17 com.apple.opengl 0x00007fff43d2d473 CGLFlushDrawable + 59
18 com.apple.AppKit 0x00007fff36a59caa -[NSOpenGLContext flushBuffer] + 20
19 libqcocoa.dylib 0x0000000129e7e5b3 0x129e02000 + 509363
20 QtGui 0x000000011d764b64 QOpenGLContext::swapBuffers(QSurface*) + 212
21 QtOpenGL 0x000000012931cb2f QPlatformBackingStoreOpenGLSupport::composeAndFlush(QWindow*, QRegion const&, QPoint const&, QPlatformTextureList*, bool) + 4863
22 QtWidgets 0x000000011ce5d626 0x11cdee000 + 456230
23 QtWidgets 0x000000011ce5d009 0x11cdee000 + 454665
24 QtWidgets 0x000000011ce65626 0x11cdee000 + 488998
25 QtWidgets 0x000000011ce62929 0x11cdee000 + 477481
26 QtWidgets 0x000000011cdfaa87 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
27 QtWidgets 0x000000011cdfba43 QApplication::notify(QObject*, QEvent*) + 499
28 QtWidgets.abi3.so 0x000000011c9171e6 sipQApplication::notify(QObject*, QEvent*) + 230
29 QtCore 0x000000011a4ccc3a QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
30 QtGui 0x000000011d48df76 QGuiApplicationPrivate::processExposeEvent(QWindowSystemInterfacePrivate::ExposeEvent*) + 406
31 QtGui 0x000000011d4e6d55 0x11d406000 + 920917
32 QtGui 0x000000011d4e34d9 bool QWindowSystemInterface::handleExposeEvent(QWindow*, QRegion const&) + 57
33 libqcocoa.dylib 0x0000000129e4dd5a 0x129e02000 + 310618
34 libqcocoa.dylib 0x0000000129e661d7 0x129e02000 + 410071
35 com.apple.QuartzCore 0x00007fff44d133e0 -[CALayer display] + 180
36 com.apple.AppKit 0x00007fff36db052c -[_NSOpenGLViewBackingLayer display] + 133
37 com.apple.QuartzCore 0x00007fff44d12cad CA::Layer::display_if_needed(CA::Transaction*) + 757
38 com.apple.QuartzCore 0x00007fff44cf0fca CA::Context::commit_transaction(CA::Transaction*, double) + 334
39 com.apple.QuartzCore 0x00007fff44cefbb4 CA::Transaction::commit() + 644
40 com.apple.AppKit 0x00007fff36850041 __62+[CATransaction(NSCATransaction) NS_setFlushesWithDisplayLink]_block_invoke + 266
41 com.apple.AppKit 0x00007fff36f6e920 ___NSRunLoopObserverCreateWithHandler_block_invoke + 41
42 com.apple.CoreFoundation 0x00007fff393ea575 __CFRUNLOOP_IS_CALLING_OUT_TO_AN_OBSERVER_CALLBACK_FUNCTION__ + 23
43 com.apple.CoreFoundation 0x00007fff393ea4a7 __CFRunLoopDoObservers + 457
44 com.apple.CoreFoundation 0x00007fff393e9a45 __CFRunLoopRun + 874
45 com.apple.CoreFoundation 0x00007fff393e907e CFRunLoopRunSpecific + 462
46 com.apple.HIToolbox 0x00007fff38067aad RunCurrentEventLoopInMode + 292
47 com.apple.HIToolbox 0x00007fff380677c5 ReceiveNextEventCommon + 584
48 com.apple.HIToolbox 0x00007fff38067569 _BlockUntilNextEventMatchingListInModeWithFilter + 64
49 com.apple.AppKit 0x00007fff366b03c9 _DPSNextEvent + 883
50 com.apple.AppKit 0x00007fff366aec10 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
51 com.apple.AppKit 0x00007fff366a091e -[NSApplication run] + 658
52 libqcocoa.dylib 0x0000000129e1b0ac 0x129e02000 + 102572
53 QtCore 0x000000011a4d6326 QEventLoop::exec(QFlags) + 486
54 QtCore 0x000000011a4cd235 QCoreApplication::exec() + 133
55 QtWidgets.abi3.so 0x000000011ca03d9a meth_QApplication_exec(_object*, _object*) + 90
56 org.python.python 0x000000010b14a7ea cfunction_call + 90
57 org.python.python 0x000000010b0e53b1 _PyObject_MakeTpCall + 129
58 org.python.python 0x000000010b2133e7 _PyEval_EvalFrameDefault + 60455
59 org.python.python 0x000000010b20347a PyEval_EvalCode + 282
60 org.python.python 0x000000010b1fdce3 builtin_exec + 483
61 org.python.python 0x000000010b14b144 cfunction_vectorcall_FASTCALL_KEYWORDS + 68
62 org.python.python 0x000000010b2132ef _PyEval_EvalFrameDefault + 60207
63 org.python.python 0x000000010b2194d0 _PyEval_Vector + 128
64 org.python.python 0x000000010b2b06fd pymain_run_module + 253
65 org.python.python 0x000000010b2b01c1 Py_RunMain + 2225
66 org.python.python 0x000000010b2b117b pymain_main + 43
67 org.python.python 0x000000010b2b114a Py_Main + 42
68 edu.ucsf.cgl.ChimeraX 0x000000010b02cd9a main + 122
69 libdyld.dylib 0x00007fff72469cc9 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff725ad872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7266e425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010c99e67f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff725ad872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7266e425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010c99e67f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff725ad872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7266e425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010c99e67f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 4:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff725b3b86 kevent64 + 10
1 QtWebEngineCore 0x00000001222f6a2a 0x11e396000 + 66456106
2 QtWebEngineCore 0x00000001222f6927 0x11e396000 + 66455847
3 QtWebEngineCore 0x0000000122273a5c 0x11e396000 + 65919580
4 QtWebEngineCore 0x000000012222b998 0x11e396000 + 65624472
5 QtWebEngineCore 0x0000000122295eb8 0x11e396000 + 66059960
6 QtWebEngineCore 0x000000012227d2ad 0x11e396000 + 65958573
7 QtWebEngineCore 0x000000012229604a 0x11e396000 + 66060362
8 QtWebEngineCore 0x00000001222bd908 0x11e396000 + 66222344
9 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 5:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff725aadea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff725ab160 mach_msg + 60
2 QtWebEngineCore 0x00000001222c4e26 0x11e396000 + 66252326
3 QtWebEngineCore 0x00000001222897bf 0x11e396000 + 66009023
4 QtWebEngineCore 0x000000012228a26c 0x11e396000 + 66011756
5 QtWebEngineCore 0x0000000122289ddd 0x11e396000 + 66010589
6 QtWebEngineCore 0x00000001222bd908 0x11e396000 + 66222344
7 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 6:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff725b3b86 kevent64 + 10
1 QtWebEngineCore 0x00000001222f6a2a 0x11e396000 + 66456106
2 QtWebEngineCore 0x00000001222f6927 0x11e396000 + 66455847
3 QtWebEngineCore 0x0000000122273a5c 0x11e396000 + 65919580
4 QtWebEngineCore 0x000000012222b998 0x11e396000 + 65624472
5 QtWebEngineCore 0x0000000122295eb8 0x11e396000 + 66059960
6 QtWebEngineCore 0x00000001211bb3a2 0x11e396000 + 48386978
7 QtWebEngineCore 0x000000012229604a 0x11e396000 + 66060362
8 QtWebEngineCore 0x00000001222bd908 0x11e396000 + 66222344
9 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 7:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff725aadea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff725ab160 mach_msg + 60
2 QtWebEngineCore 0x00000001222c4e26 0x11e396000 + 66252326
3 QtWebEngineCore 0x00000001222c4bef 0x11e396000 + 66251759
4 QtWebEngineCore 0x00000001221fa1c9 0x11e396000 + 65421769
5 QtWebEngineCore 0x0000000122273a5c 0x11e396000 + 65919580
6 QtWebEngineCore 0x000000012222b998 0x11e396000 + 65624472
7 QtWebEngineCore 0x0000000122295eb8 0x11e396000 + 66059960
8 QtWebEngineCore 0x000000012229604a 0x11e396000 + 66060362
9 QtWebEngineCore 0x00000001222bd908 0x11e396000 + 66222344
10 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 8:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff725ad872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7266e425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x00000001222bcd1b 0x11e396000 + 66219291
3 QtWebEngineCore 0x000000012438a92d 0x11e396000 + 100616493
4 QtWebEngineCore 0x00000001222bd908 0x11e396000 + 66222344
5 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
6 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 9:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff725aadea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff725ab160 mach_msg + 60
2 QtWebEngineCore 0x00000001222c4e26 0x11e396000 + 66252326
3 QtWebEngineCore 0x00000001222c4bef 0x11e396000 + 66251759
4 QtWebEngineCore 0x00000001221fa1c9 0x11e396000 + 65421769
5 QtWebEngineCore 0x0000000122273a5c 0x11e396000 + 65919580
6 QtWebEngineCore 0x000000012222b998 0x11e396000 + 65624472
7 QtWebEngineCore 0x0000000122295eb8 0x11e396000 + 66059960
8 QtWebEngineCore 0x000000012229604a 0x11e396000 + 66060362
9 QtWebEngineCore 0x00000001222bd908 0x11e396000 + 66222344
10 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 10:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff725b3b86 kevent64 + 10
1 QtWebEngineCore 0x00000001222f6a2a 0x11e396000 + 66456106
2 QtWebEngineCore 0x00000001222f6927 0x11e396000 + 66455847
3 QtWebEngineCore 0x0000000122273a5c 0x11e396000 + 65919580
4 QtWebEngineCore 0x000000012222b998 0x11e396000 + 65624472
5 QtWebEngineCore 0x0000000122295eb8 0x11e396000 + 66059960
6 QtWebEngineCore 0x000000012229604a 0x11e396000 + 66060362
7 QtWebEngineCore 0x00000001222bd908 0x11e396000 + 66222344
8 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 11:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff725aadea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff725ab160 mach_msg + 60
2 QtWebEngineCore 0x00000001222c4e26 0x11e396000 + 66252326
3 QtWebEngineCore 0x00000001222c4bef 0x11e396000 + 66251759
4 QtWebEngineCore 0x00000001221fa1c9 0x11e396000 + 65421769
5 QtWebEngineCore 0x0000000122273a5c 0x11e396000 + 65919580
6 QtWebEngineCore 0x000000012222b998 0x11e396000 + 65624472
7 QtWebEngineCore 0x0000000122295eb8 0x11e396000 + 66059960
8 QtWebEngineCore 0x000000012229604a 0x11e396000 + 66060362
9 QtWebEngineCore 0x00000001222bd908 0x11e396000 + 66222344
10 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 12:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff725aadea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff725ab160 mach_msg + 60
2 QtWebEngineCore 0x00000001222c4e26 0x11e396000 + 66252326
3 QtWebEngineCore 0x00000001221fa168 0x11e396000 + 65421672
4 QtWebEngineCore 0x0000000122273a5c 0x11e396000 + 65919580
5 QtWebEngineCore 0x000000012222b998 0x11e396000 + 65624472
6 QtWebEngineCore 0x0000000122295eb8 0x11e396000 + 66059960
7 QtWebEngineCore 0x000000012229604a 0x11e396000 + 66060362
8 QtWebEngineCore 0x00000001222bd908 0x11e396000 + 66222344
9 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 13:: NetworkService
0 libsystem_kernel.dylib 0x00007fff725b3b86 kevent64 + 10
1 QtWebEngineCore 0x00000001222f6a2a 0x11e396000 + 66456106
2 QtWebEngineCore 0x00000001222f6927 0x11e396000 + 66455847
3 QtWebEngineCore 0x0000000122273a5c 0x11e396000 + 65919580
4 QtWebEngineCore 0x000000012222b998 0x11e396000 + 65624472
5 QtWebEngineCore 0x0000000122295eb8 0x11e396000 + 66059960
6 QtWebEngineCore 0x000000012229604a 0x11e396000 + 66060362
7 QtWebEngineCore 0x00000001222bd908 0x11e396000 + 66222344
8 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff725aadea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff725ab160 mach_msg + 60
2 QtWebEngineCore 0x00000001222c4e26 0x11e396000 + 66252326
3 QtWebEngineCore 0x00000001222c4bef 0x11e396000 + 66251759
4 QtWebEngineCore 0x00000001221fa1c9 0x11e396000 + 65421769
5 QtWebEngineCore 0x0000000122273a5c 0x11e396000 + 65919580
6 QtWebEngineCore 0x000000012222b998 0x11e396000 + 65624472
7 QtWebEngineCore 0x0000000122295eb8 0x11e396000 + 66059960
8 QtWebEngineCore 0x000000012229604a 0x11e396000 + 66060362
9 QtWebEngineCore 0x00000001222bd908 0x11e396000 + 66222344
10 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 15:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff725aadea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff725ab160 mach_msg + 60
2 QtWebEngineCore 0x00000001222c4e26 0x11e396000 + 66252326
3 QtWebEngineCore 0x00000001222897bf 0x11e396000 + 66009023
4 QtWebEngineCore 0x000000012228a26c 0x11e396000 + 66011756
5 QtWebEngineCore 0x0000000122289ecd 0x11e396000 + 66010829
6 QtWebEngineCore 0x00000001222bd908 0x11e396000 + 66222344
7 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff725aadea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff725ab160 mach_msg + 60
2 QtWebEngineCore 0x00000001222c4e26 0x11e396000 + 66252326
3 QtWebEngineCore 0x00000001222c4bef 0x11e396000 + 66251759
4 QtWebEngineCore 0x00000001221fa1c9 0x11e396000 + 65421769
5 QtWebEngineCore 0x0000000122273a5c 0x11e396000 + 65919580
6 QtWebEngineCore 0x000000012222b998 0x11e396000 + 65624472
7 QtWebEngineCore 0x0000000122295eb8 0x11e396000 + 66059960
8 QtWebEngineCore 0x000000012229604a 0x11e396000 + 66060362
9 QtWebEngineCore 0x00000001222bd908 0x11e396000 + 66222344
10 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 17:
0 libsystem_kernel.dylib 0x00007fff725ad872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7266e425 _pthread_cond_wait + 698
2 com.apple.GeForceMTLDriver 0x00007fff34c0ecbb 0x7fff34aa2000 + 1494203
3 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 18:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff725aadea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff725ab160 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff393eb135 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff393e9c02 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff393e907e CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff36851bf4 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 19:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff725aadea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff725ab160 mach_msg + 60
2 QtWebEngineCore 0x00000001222c4e26 0x11e396000 + 66252326
3 QtWebEngineCore 0x00000001222c4bef 0x11e396000 + 66251759
4 QtWebEngineCore 0x00000001221fa1c9 0x11e396000 + 65421769
5 QtWebEngineCore 0x0000000122273a5c 0x11e396000 + 65919580
6 QtWebEngineCore 0x000000012222b998 0x11e396000 + 65624472
7 QtWebEngineCore 0x0000000122295eb8 0x11e396000 + 66059960
8 QtWebEngineCore 0x000000012229604a 0x11e396000 + 66060362
9 QtWebEngineCore 0x00000001222bd908 0x11e396000 + 66222344
10 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 20:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff725aadea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff725ab160 mach_msg + 60
2 QtWebEngineCore 0x00000001222c4e26 0x11e396000 + 66252326
3 QtWebEngineCore 0x00000001222897bf 0x11e396000 + 66009023
4 QtWebEngineCore 0x0000000122289f9a 0x11e396000 + 66011034
5 QtWebEngineCore 0x0000000122289e0d 0x11e396000 + 66010637
6 QtWebEngineCore 0x00000001222bd908 0x11e396000 + 66222344
7 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 21:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff725aadea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff725ab160 mach_msg + 60
2 QtWebEngineCore 0x00000001222c4e26 0x11e396000 + 66252326
3 QtWebEngineCore 0x00000001222897bf 0x11e396000 + 66009023
4 QtWebEngineCore 0x000000012228a26c 0x11e396000 + 66011756
5 QtWebEngineCore 0x0000000122289e6d 0x11e396000 + 66010733
6 QtWebEngineCore 0x00000001222bd908 0x11e396000 + 66222344
7 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 22:
0 libsystem_pthread.dylib 0x00007fff72669b68 start_wqthread + 0
Thread 23:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff725aadea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff725ab160 mach_msg + 60
2 QtWebEngineCore 0x00000001222c4e26 0x11e396000 + 66252326
3 QtWebEngineCore 0x00000001222897bf 0x11e396000 + 66009023
4 QtWebEngineCore 0x000000012228a26c 0x11e396000 + 66011756
5 QtWebEngineCore 0x0000000122289e6d 0x11e396000 + 66010733
6 QtWebEngineCore 0x00000001222bd908 0x11e396000 + 66222344
7 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 24:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff725aadea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff725ab160 mach_msg + 60
2 QtWebEngineCore 0x00000001222c4e26 0x11e396000 + 66252326
3 QtWebEngineCore 0x00000001222897bf 0x11e396000 + 66009023
4 QtWebEngineCore 0x0000000122289f9a 0x11e396000 + 66011034
5 QtWebEngineCore 0x0000000122289e6d 0x11e396000 + 66010733
6 QtWebEngineCore 0x00000001222bd908 0x11e396000 + 66222344
7 libsystem_pthread.dylib 0x00007fff7266e109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff72669b8b thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00000001171b4dc0 rcx: 0x00007fbbbf5dd9e8 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00007fbbbf5dda10 rsp: 0x00007fbbbf5dd9e8
r8: 0x0000000000000002 r9: 0xcccccccccccccccd r10: 0x00000001171b4dc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x00007fbbc84ce001 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff725b132a rfl: 0x0000000000000246 cr2: 0x00007fbbbf5ddf48
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x10bed0000 - 0x10bfe3fff +libarrays.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/lib/libarrays.dylib
0x10c010000 - 0x10c017ffb +_json.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_json.cpython-311-darwin.so
0x10c024000 - 0x10c4d7fe3 +_multiarray_umath.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so
0x10c650000 - 0x11036e667 +libopenblas64_.0.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libopenblas64_.0.dylib
0x110630000 - 0x110c72fef +libgfortran.5.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libgfortran.5.dylib
0x110cad000 - 0x110cfafff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x110d04000 - 0x110d14ff7 +libgcc_s.1.1.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libgcc_s.1.1.dylib
0x116e26000 - 0x116e41ffb +_pickle.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_pickle.cpython-311-darwin.so
0x116f56000 - 0x116f59ff3 +_contextvars.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_contextvars.cpython-311-darwin.so
0x116f66000 - 0x116f79fff +_multiarray_tests.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_tests.cpython-311-darwin.so
0x117092000 - 0x1170a5fff +_ctypes.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_ctypes.cpython-311-darwin.so
0x1170be000 - 0x1170d1ff3 +_pocketfft_internal.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/fft/_pocketfft_internal.cpython-311-darwin.so
0x1170e9000 - 0x11717b267 dyld (750.7) /usr/lib/dyld
0x1171ef000 - 0x11720eff3 +_umath_linalg.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/linalg/_umath_linalg.cpython-311-darwin.so
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0x1173ff000 - 0x11741eff3 +bit_generator.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/bit_generator.cpython-311-darwin.so
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0x11784f000 - 0x11785eff3 +_pcg64.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_pcg64.cpython-311-darwin.so
0x117873000 - 0x11787aff7 +_sfc64.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_sfc64.cpython-311-darwin.so
0x11788b000 - 0x11791affb +_generator.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_generator.cpython-311-darwin.so
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0x119b97000 - 0x119bbaffb +_geometry.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/geometry/_geometry.cpython-311-darwin.so
0x11a0d3000 - 0x11a256ffb +QtCore.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtCore.abi3.so
0x11a45f000 - 0x11a962927 +QtCore (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtCore.framework/Versions/A/QtCore
0x11c7ae000 - 0x11c7c5ff3 +sip.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/sip.cpython-311-darwin.so
0x11c7de000 - 0x11ca89ff3 +QtWidgets.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtWidgets.abi3.so
0x11cdee000 - 0x11d2a9fff +QtWidgets (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtWidgets.framework/Versions/A/QtWidgets
0x11d406000 - 0x11daadfe7 +QtGui (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtGui.framework/Versions/A/QtGui
0x11dbda000 - 0x11dc65ff3 +QtDBus (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtDBus.framework/Versions/A/QtDBus
0x11dc8a000 - 0x11ddf1fff +QtGui.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtGui.abi3.so
0x11e2ca000 - 0x11e2d9ffb +QtWebEngineWidgets.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtWebEngineWidgets.abi3.so
0x11e2ee000 - 0x11e301ffb +QtWebEngineWidgets (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtWebEngineWidgets.framework/Versions/A/QtWebEngineWidgets
0x11e31a000 - 0x11e365fff +QtPrintSupport (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtPrintSupport.framework/Versions/A/QtPrintSupport
0x11e396000 - 0x1280fdf87 +QtWebEngineCore (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtWebEngineCore.framework/Versions/A/QtWebEngineCore
0x128d92000 - 0x129175ff7 +QtQuick (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtQuick.framework/Versions/A/QtQuick
0x1292d6000 - 0x12933dfff +QtOpenGL (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtOpenGL.framework/Versions/A/QtOpenGL
0x12936e000 - 0x1293f5ffb +QtQmlModels (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtQmlModels.framework/Versions/A/QtQmlModels
0x129426000 - 0x129459ff3 +QtWebChannel (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtWebChannel.framework/Versions/A/QtWebChannel
0x129472000 - 0x129855fff +QtQml (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtQml.framework/Versions/A/QtQml
0x129912000 - 0x129a45ff7 +QtNetwork (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtNetwork.framework/Versions/A/QtNetwork
0x129a96000 - 0x129b0dff3 +QtPositioning (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtPositioning.framework/Versions/A/QtPositioning
0x129b32000 - 0x129b45fff +QtQuickWidgets (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtQuickWidgets.framework/Versions/A/QtQuickWidgets
0x129b5e000 - 0x129b65ff7 +QtWebChannel.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtWebChannel.abi3.so
0x129b76000 - 0x129be5fff +QtNetwork.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtNetwork.abi3.so
0x129c8e000 - 0x129cbdff7 +QtWebEngineCore.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtWebEngineCore.abi3.so
0x129d22000 - 0x129d45fff +QtPrintSupport.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtPrintSupport.abi3.so
0x129e02000 - 0x129ea1fff +libqcocoa.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/plugins/platforms/libqcocoa.dylib
0x12aac7000 - 0x12aacaff3 +_heapq.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_heapq.cpython-311-darwin.so
0x12accf000 - 0x12acf6ff7 +libqmacstyle.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/plugins/styles/libqmacstyle.dylib
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0x7fff72647000 - 0x7fff72654ffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff72655000 - 0x7fff7265eff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff7265f000 - 0x7fff72667fef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff72668000 - 0x7fff72672fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff72673000 - 0x7fff72677ff3 libsystem_sandbox.dylib (1217.141.9) /usr/lib/system/libsystem_sandbox.dylib
0x7fff72678000 - 0x7fff7267afff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff7267b000 - 0x7fff72682ffb libsystem_symptoms.dylib (1238.120.2) /usr/lib/system/libsystem_symptoms.dylib
0x7fff72683000 - 0x7fff72699ff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib
0x7fff7269b000 - 0x7fff726a0ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff726a1000 - 0x7fff726d6ffe libxpc.dylib (1738.140.3) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 3781
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 1597367
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%)
Writable regions: Total=1.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.2G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 352K 2
CG image 104K 16
CoreAnimation 80K 15
CoreGraphics 8K 1
CoreImage 24K 6
CoreUI image data 1152K 18
Foundation 4K 1
Kernel Alloc Once 8K 1
MALLOC 698.5M 1057
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 1824K 10 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
Mach message 16K 2
OpenGL GLSL 384K 4
STACK GUARD 96K 24
Stack 155.2M 25
Stack Guard 56.0M 1
VM_ALLOCATE 239.5M 281
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 73.1M 612
__DATA_CONST 56K 5
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 416.5M 270
__OBJC_RO 32.3M 1
__OBJC_RW 1860K 2
__TEXT 617.5M 586
__UNICODE 564K 1
mapped file 81.0M 46
shared memory 2860K 30
=========== ======= =======
TOTAL 2.5G 3031
TOTAL, minus reserved VM space 2.3G 3031
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/Roger/Downloads/fold_azoarcus_with_5_leader_sequence_but_no_acggcc_oligo/fold_azoarcus_with_5_leader_sequence_but_no_acggcc_oligo_model_0.cif
Chain information for
fold_azoarcus_with_5_leader_sequence_but_no_acggcc_oligo_model_0.cif #1
---
Chain | Description
D | .
> open
> /Users/Roger/Downloads/fold_azoarcus_with_5_leader_sequence_and_acggcc_oligo/fold_azoarcus_with_5_leader_sequence_and_acggcc_oligo_model_0.cif
Chain information for
fold_azoarcus_with_5_leader_sequence_and_acggcc_oligo_model_0.cif #2
---
Chain | Description
D | .
E | .
> mmaker #1 to #2
Using Nucleic matrix instead of BLOSUM-62 for matching
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | Nucleic
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_azoarcus_with_5_leader_sequence_and_acggcc_oligo_model_0.cif,
chain D (#2) with
fold_azoarcus_with_5_leader_sequence_but_no_acggcc_oligo_model_0.cif, chain D
(#1), sequence alignment score = 812
RMSD between 198 pruned atom pairs is 0.605 angstroms; (across all 203 pairs:
0.716)
> nucleotides atoms
> style nucleic stick
Changed 8857 atom styles
> nucleotides atoms
> style nucleic stick
Changed 8857 atom styles
> nucleotides fill
> style nucleic stick
Changed 8857 atom styles
> show cartoons
> hbonds
1837 hydrogen bonds found
> select ::name="C"
2380 atoms, 2536 bonds, 70 pseudobonds, 119 residues, 3 models selected
> color sel lime
> select ::name="G"
3130 atoms, 3443 bonds, 115 pseudobonds, 136 residues, 3 models selected
> color sel red
> select ::name="U"
1080 atoms, 1140 bonds, 36 pseudobonds, 54 residues, 3 models selected
> color sel cornflower blue
> select ::name="A"
2267 atoms, 2511 bonds, 185 pseudobonds, 103 residues, 3 models selected
> color sel yellow
> nucleotides sel tube/slab shape box
> nucleotides sel ladder
Drag select of 4740 atoms, 412 residues, 5179 bonds, 960 shapes, 1837
pseudobonds
> nucleotides sel ladder
> select clear
> nucleotides ladder
> nucleotides fill
> style nucleic stick
Changed 8857 atom styles
> nucleotides tube/slab shape box
> select up
46 atoms, 50 bonds, 2 residues, 2 models selected
> nucleotides sel atoms
> style nucleic & sel stick
Changed 46 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 18 atom styles
> nucleotides sel tube/slab shape muffler
> nucleotides sel tube/slab shape ellipsoid
> nucleotides sel tube/slab shape box
> nucleotides sel slab
> style nucleic & sel stick
Changed 18 atom styles
> nucleotides sel tube/slab shape box
> nucleotides sel fill
> style nucleic & sel stick
Changed 18 atom styles
> select add #3
18 atoms, 1837 pseudobonds, 2 residues, 3 models selected
> select subtract #3
18 atoms, 2 residues, 2 models selected
> select add #3
18 atoms, 1837 pseudobonds, 2 residues, 3 models selected
> select subtract #3
18 atoms, 2 residues, 2 models selected
> select #2/E:1-6
129 atoms, 143 bonds, 1 pseudobond, 6 residues, 2 models selected
> select #2/E:1-6
129 atoms, 143 bonds, 1 pseudobond, 6 residues, 2 models selected
> view /E
> select /E
129 atoms, 143 bonds, 1 pseudobond, 6 residues, 2 models selected
> style sel ball
Changed 129 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 129 atom styles
> ui tool show "Show Sequence Viewer"
> sequence chain #1/D #2/D
Alignment identifier is 1
> renumber #1/D -5
Expected a keyword
> renumber #1/D to -5
Expected a keyword
> renumber #1/D start -5
203 residues renumbered
> renumber #2/D start -5
203 residues renumbered
> ui tool show "Side View"
Drag select of 166 atoms, 390 residues, 177 bonds, 1141 shapes, 1754
pseudobonds
Drag select of 166 atoms, 412 residues, 177 bonds, 1212 shapes, 1837
pseudobonds
> nucleotides sel ladder
> select clear
> select 98-103
Expected an objects specifier or a keyword
> select #2/D 98-103
Expected a keyword
> select #2/D :98-103
126 atoms, 139 bonds, 12 pseudobonds, 6 residues, 2 models selected
> select #1/D :98-103
126 atoms, 139 bonds, 6 pseudobonds, 6 residues, 2 models selected
> nucleotides sel atoms
> style nucleic & sel stick
Changed 126 atom styles
> select clear
> select #2/D :98-103
126 atoms, 139 bonds, 12 pseudobonds, 6 residues, 2 models selected
> nucleotides sel atoms
> style nucleic & sel stick
Changed 126 atom styles
> hide #1/D
> view #1/D
> view #1/D :91-93
> hide #1/D :91-93
> hide #1/D :*
> hide #1/D
> select #1/D
4364 atoms, 4887 bonds, 429 pseudobonds, 203 residues, 2 models selected
> hide
> nucleotides sel atoms
> style nucleic & sel stick
Changed 4364 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 4364 atom styles
> nucleotides sel fill
> style nucleic & sel stick
Changed 4364 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 4364 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 4364 atom styles
> nucleotides sel fill
> style nucleic & sel stick
Changed 4364 atom styles
> nucleotides sel slab
> style nucleic & sel stick
Changed 4364 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 4364 atom styles
> nucleotides sel ladder
> nucleotides sel atoms
> style nucleic & sel stick
Changed 4364 atom styles
> show sel atoms
> select clear
Drag select of 3 atoms, 4 residues, 4 bonds, 1 pseudobonds
Drag select of 7 atoms, 6 residues, 8 bonds, 5 pseudobonds
> view :145
Drag select of 57 atoms, 9 residues, 65 bonds, 4 pseudobonds
> show sel atoms
> nucleotides sel atoms
> style nucleic & sel stick
Changed 195 atom styles
Drag select of 927 atoms, 142 residues, 1026 bonds, 129 pseudobonds
> hide sel atoms
> nucleotides sel atoms
> style nucleic & sel stick
Changed 3089 atom styles
> hide sel cartoons
> show sel cartoons
> hide sel atoms
> nucleotides sel atoms
> style nucleic & sel stick
Changed 3089 atom styles
Drag select of 2029 atoms, 412 residues, 2231 bonds, 290 pseudobonds
> hide sel atoms
> select clear
> select #2/D:12
20 atoms, 21 bonds, 1 residue, 1 model selected
> select add #1/D:12
40 atoms, 42 bonds, 2 residues, 2 models selected
> select add #2/D:11
60 atoms, 63 bonds, 3 residues, 2 models selected
> select add #1/D:11
80 atoms, 84 bonds, 4 residues, 2 models selected
> select #1/D:43
20 atoms, 21 bonds, 1 residue, 1 model selected
> select #2/D:43
20 atoms, 21 bonds, 1 residue, 1 model selected
> select #1/D:43
20 atoms, 21 bonds, 1 residue, 1 model selected
> select #1/D:7
20 atoms, 21 bonds, 1 residue, 1 model selected
> select add #2/D:6
40 atoms, 42 bonds, 2 residues, 2 models selected
> nucleotides sel atoms
> style nucleic & sel stick
Changed 40 atom styles
> show sel atoms
> select #2/D:3
23 atoms, 25 bonds, 1 residue, 1 model selected
> select add #1/D:3
46 atoms, 50 bonds, 2 residues, 2 models selected
> select subtract #1/D:3
23 atoms, 25 bonds, 1 residue, 1 model selected
> select subtract #2/D:3
Nothing selected
> select #2/D:3
23 atoms, 25 bonds, 1 residue, 1 model selected
> select add #1/D:3
46 atoms, 50 bonds, 2 residues, 2 models selected
> show sel atoms
> nucleotides sel atoms
> style nucleic & sel stick
Changed 23 atom styles
> select clear
> select #2/D:3
23 atoms, 25 bonds, 1 residue, 1 model selected
> select add #1/D:3
46 atoms, 50 bonds, 2 residues, 2 models selected
> show sel atoms
> nucleotides sel atoms
> style nucleic & sel stick
Changed 46 atom styles
> show sel cartoons
> style sel ball
Changed 46 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 46 atom styles
> show sel cartoons
> hide sel cartoons
> show sel atoms
> nucleotides sel atoms
> style nucleic & sel stick
Changed 46 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 46 atom styles
> show sel cartoons
> show sel surfaces
> hide sel surfaces
> select clear
> select add #1/D:3
23 atoms, 25 bonds, 1 residue, 1 model selected
> select add #2/D:3
46 atoms, 50 bonds, 2 residues, 3 models selected
> style sel ball
Changed 46 atom styles
> show sel atoms
> nucleotides sel atoms
> style nucleic & sel stick
Changed 46 atom styles
> style sel ball
Changed 46 atom styles
> style sel ball
Changed 46 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 46 atom styles
> nucleotides sel fill
> style nucleic & sel stick
Changed 46 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 46 atom styles
> hide sel cartoons
> show sel cartoons
> nucleotides sel atoms
> style nucleic & sel stick
Changed 46 atom styles
> select clear
> select #1/D:3
23 atoms, 25 bonds, 1 residue, 1 model selected
> select add #2/D:3
46 atoms, 50 bonds, 2 residues, 3 models selected
> show sel atoms
> nucleotides sel atoms
> style nucleic & sel stick
Changed 46 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 46 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 46 atom styles
> select #1/D:4
20 atoms, 21 bonds, 1 residue, 1 model selected
> select add #2/D:4
40 atoms, 42 bonds, 2 residues, 3 models selected
> nucleotides sel atoms
> style nucleic & sel stick
Changed 40 atom styles
> show sel atoms
> select #2/D:8
23 atoms, 25 bonds, 1 residue, 1 model selected
> select add #1/D:8
46 atoms, 50 bonds, 2 residues, 3 models selected
> nucleotides sel atoms
> style nucleic & sel stick
Changed 46 atom styles
> hide sel cartoons
> show sel atoms
> show sel cartoons
> color sel bynucleotide
> nucleotides sel atoms
> style nucleic & sel stick
Changed 46 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 46 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 46 atom styles
Drag select of 124 atoms, 412 residues, 136 bonds, 5 pseudobonds
> nucleotides sel atoms
> style nucleic & sel stick
Changed 8857 atom styles
> nucleotides sel ladder
> nucleotides sel atoms
> style nucleic & sel stick
Changed 8857 atom styles
> hide sel cartoons
> show sel atoms
> show sel cartoons
> show sel surfaces
> hide sel surfaces
> nucleotides sel atoms
> style nucleic & sel stick
Changed 8857 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 8857 atom styles
> hide sel cartoons
> nucleotides sel atoms
> style nucleic & sel stick
Changed 8857 atom styles
> style sel ball
Changed 8857 atom styles
> style sel ball
Changed 8857 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 8857 atom styles
> style sel ball
Changed 8857 atom styles
> color sel bynucleotide
> show (#!1-2 & sel) target ab
> cartoon hide (#!1-2 & sel)
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 NVIDIA-14.0.32 355.11.11.10.10.143
OpenGL renderer: NVIDIA GeForce GT 755M OpenGL Engine
OpenGL vendor: NVIDIA Corporation
Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: iMac
Model Identifier: iMac14,2
Processor Name: Quad-Core Intel Core i5
Processor Speed: 3.2 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Memory: 24 GB
Boot ROM Version: 433.140.2.0.0
SMC Version (system): 2.15f7
Software:
System Software Overview:
System Version: macOS 10.15.7 (19H2026)
Kernel Version: Darwin 19.6.0
Time since boot: 21:41
Graphics/Displays:
NVIDIA GeForce GT 755M:
Chipset Model: NVIDIA GeForce GT 755M
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 1 GB
Vendor: NVIDIA (0x10de)
Device ID: 0x0fea
Revision ID: 0x00a2
ROM Revision: 3782
Metal: Supported, feature set macOS GPUFamily1 v4
Displays:
iMac:
Display Type: LCD
Resolution: 2048 x 1152
UI Looks like: 2048 x 1152
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2022.12.7
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6.1
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.14
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.4
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.3
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.1
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.2
funcparserlib: 2.0.0a0
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.7.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.4
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.6.0
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.2.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.4
urllib3: 2.1.0
wcwidth: 0.2.13
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
Change History (2)
comment:1 by , 16 months ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics kernel error |
comment:2 by , 16 months ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics kernel error → Graphics crash, macOS 10.15.7, NVIDIA GeForce GT 755M |
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Apple Nvidia graphics driver crash.