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#15584 assigned defect

Permission denied writing setting/history files

Reported by:	chimerax-bug-report@…	Owned by:	Greg Couch
Priority:	normal	Milestone:
Component:	Input/Output	Version:
Keywords:		Cc:	Tom Goddard
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "C:\Users\2646197\Documents\YY1 _ P5.cxs" format session

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  
Log from Tue May 28 16:39:50 2024UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "C:/Users/2646197/OneDrive - University of Dundee/Desktop/YY1 structure
> analysis/fold_yy1_aav_p5/fold_yy1_aav_p5_model_0.cif"

Chain information for fold_yy1_aav_p5_model_0.cif #1  
---  
Chain | Description  
A | .  
F | .  
G | .  
  

> ui tool show "Show Sequence Viewer"

> sequence chain /A

Alignment identifier is 1/A  

> ui tool show "Show Sequence Viewer"

> sequence chain /A

Alignment identifier is 1/A  

> select /A:295

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  
7 atoms, 6 bonds, 1 residue, 1 model selected  

> select /A:295-347

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  
418 atoms, 428 bonds, 53 residues, 1 model selected  

> select /A:295

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  
7 atoms, 6 bonds, 1 residue, 1 model selected  

> select /A:295-414

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  
955 atoms, 979 bonds, 120 residues, 1 model selected  

> ui tool show Contacts

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> select /A

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  
3141 atoms, 3214 bonds, 414 residues, 1 model selected  

> ui tool show Contacts

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> contacts sel restrict /F-G ignoreHiddenModels true select true color #00aa00
> dashes 5 reveal true

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  
74 contacts  

> ui tool show "AlphaFold Error Plot"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  
Must choose path to predicted aligned file  
[Repeated 1 time(s)]

> ui tool show "AlphaFold Error Plot"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> alphafold pae #1 file "C:/Users/2646197/OneDrive - University of
> Dundee/Desktop/YY1 structure
> analysis/fold_yy1_aav_p5/fold_yy1_aav_p5_full_data_0.json"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> color #1/A:386-386 lime

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> color #1/A:318-318 magenta

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> color #1/A:386-386 lime

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> color #1/A:318-318 magenta

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> color #1/A:386-386 lime

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> color #1/A:318-318 magenta

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> color #1/A:388-388 lime

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> color #1/A:318-318 magenta

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> color #1/A:388-388 lime

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> color #1/A:318-318 magenta

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> color #1/A:166-166 lime

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> color #1/A:91-91 magenta

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> save "C:/Users/2646197/Documents/YY1 _ P5.cxs"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.9960.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

——— End of log from Tue May 28 16:39:50 2024 ———

opened ChimeraX session  

> save "C:\Program Files\ChimeraX\bin\image1.png" supersample 3

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> save "C:\Program Files\ChimeraX\bin\image2.png" supersample 3

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> movie record

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> turn y 2 180

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> wait 180

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\movie\movie.py", line 172, in capture_image  
i.save(save_path, self.img_fmt)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\PIL\Image.py", line
2320, in save  
save_handler(self, fp, filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\PIL\PpmImagePlugin.py",
line 324, in _save  
ImageFile._save(im, fp, [("raw", (0, 0) + im.size, 0, (rawmode, 0, 1))])  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\PIL\ImageFile.py", line
524, in _save  
s = encoder.encode_to_file(fh, bufsize)  
OSError: [Errno 28] No space left on device  
  
Error processing trigger "frame drawn":  
OSError: [Errno 28] No space left on device  
  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\PIL\ImageFile.py", line
524, in _save  
s = encoder.encode_to_file(fh, bufsize)  
  
See log for complete Python traceback.  
  

> movie encode "C:\Program Files\ChimeraX\bin\movie1.mp4"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  
C:\Program Files\ChimeraX\bin\ffmpeg.exe -r 25 -i
C:\Users\2646197\AppData\Local\Temp\chimovie_ZaOQ-%05d.ppm -vf
crop=floor(in_w/2)*2:floor(in_h/2)*2:0:0 -y -vcodec libx264 -f mp4 -pix_fmt
yuv420p -crf 20 C:\Program Files\ChimeraX\bin\movie1.mp4  
stdout:  
  
stderr:  
ffmpeg version 3.2.4 Copyright (c) 2000-2017 the FFmpeg developers  
built with gcc 6.3.0 (GCC)  
configuration: --enable-gpl --enable-version3 --enable-d3d11va --enable-dxva2
--enable-libmfx --enable-nvenc --enable-avisynth --enable-bzlib --enable-
fontconfig --enable-frei0r --enable-gnutls --enable-iconv --enable-libass
--enable-libbluray --enable-libbs2b --enable-libcaca --enable-libfreetype
--enable-libgme --enable-libgsm --enable-libilbc --enable-libmodplug --enable-
libmp3lame --enable-libopencore-amrnb --enable-libopencore-amrwb --enable-
libopenh264 --enable-libopenjpeg --enable-libopus --enable-librtmp --enable-
libsnappy --enable-libsoxr --enable-libspeex --enable-libtheora --enable-
libtwolame --enable-libvidstab --enable-libvo-amrwbenc --enable-libvorbis
--enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx264
--enable-libx265 --enable-libxavs --enable-libxvid --enable-libzimg --enable-
lzma --enable-zlib  
libavutil 55. 34.101 / 55. 34.101  
libavcodec 57. 64.101 / 57. 64.101  
libavformat 57. 56.101 / 57. 56.101  
libavdevice 57. 1.100 / 57. 1.100  
libavfilter 6. 65.100 / 6. 65.100  
libswscale 4. 2.100 / 4. 2.100  
libswresample 2. 3.100 / 2. 3.100  
libpostproc 54. 1.100 / 54. 1.100  
Input #0, image2, from
'C:\Users\2646197\AppData\Local\Temp\chimovie_ZaOQ-%05d.ppm':  
Duration: 00:00:00.24, start: 0.000000, bitrate: N/A  
Stream #0:0: Video: ppm, rgb24, 1343x819, 25 tbr, 25 tbn, 25 tbc  
[libx264 @ 0000000002875660] using cpu capabilities: MMX2 SSE2Fast SSSE3
SSE4.2 AVX FMA3 AVX2 LZCNT BMI2  
[libx264 @ 0000000002875660] profile High, level 3.2  
[libx264 @ 0000000002875660] 264 - core 148 r2762 90a61ec - H.264/MPEG-4 AVC
codec - Copyleft 2003-2017 - http://www.videolan.org/x264.html - options:
cabac=1 ref=3 deblock=1:0:0 analyse=0x3:0x113 me=hex subme=7 psy=1
psy_rd=1.00:0.00 mixed_ref=1 me_range=16 chroma_me=1 trellis=1 8x8dct=1 cqm=0
deadzone=21,11 fast_pskip=1 chroma_qp_offset=-2 threads=6 lookahead_threads=1
sliced_threads=0 nr=0 decimate=1 interlaced=0 bluray_compat=0
constrained_intra=0 bframes=3 b_pyramid=2 b_adapt=1 b_bias=0 direct=1
weightb=1 open_gop=0 weightp=2 keyint=250 keyint_min=25 scenecut=40
intra_refresh=0 rc_lookahead=40 rc=crf mbtree=1 crf=20.0 qcomp=0.60 qpmin=0
qpmax=69 qpstep=4 ip_ratio=1.40 aq=1:1.00  
Output #0, mp4, to 'C:\Program Files\ChimeraX\bin\movie1.mp4':  
Metadata:  
encoder : Lavf57.56.101  
Stream #0:0: Video: h264 (libx264) ([33][0][0][0] / 0x0021), yuv420p,
1342x818, q=-1--1, 25 fps, 12800 tbn, 25 tbc  
Metadata:  
encoder : Lavc57.64.101 libx264  
Side data:  
cpb: bitrate max/min/avg: 0/0/0 buffer size: 0 vbv_delay: -1  
Stream mapping:  
Stream #0:0 -> #0:0 (ppm (native) -> h264 (libx264))  
Press [q] to stop, [?] for help  
av_interleaved_write_frame(): No space left on device  
Error writing trailer of C:\Program Files\ChimeraX\bin\movie1.mp4: No space
left on deviceframe= 6 fps=0.0 q=25.0 Lsize= 32kB time=-00:00:00.07
bitrate=N/A speed=N/A  
video:40kB audio:0kB subtitle:0kB other streams:0kB global headers:0kB muxing
overhead: unknown  
[libx264 @ 0000000002875660] frame I:1 Avg QP:18.80 size: 40673  
[libx264 @ 0000000002875660] frame P:2 Avg QP:26.14 size: 27299  
[libx264 @ 0000000002875660] frame B:3 Avg QP:28.36 size: 19651  
[libx264 @ 0000000002875660] consecutive B-frames: 33.3% 0.0% 0.0% 66.7%  
[libx264 @ 0000000002875660] mb I I16..4: 26.5% 55.4% 18.1%  
[libx264 @ 0000000002875660] mb P I16..4: 0.5% 2.3% 6.2% P16..4: 5.7% 5.1%
4.3% 0.0% 0.0% skip:75.9%  
[libx264 @ 0000000002875660] mb B I16..4: 0.1% 0.4% 1.2% B16..8: 8.0% 7.3%
5.9% direct: 0.8% skip:76.4% L0:46.3% L1:36.5% BI:17.2%  
[libx264 @ 0000000002875660] 8x8 transform intra:49.7% inter:8.1%  
[libx264 @ 0000000002875660] coded y,uvDC,uvAC intra: 19.9% 10.4% 9.8% inter:
7.1% 4.1% 4.0%  
[libx264 @ 0000000002875660] i16 v,h,dc,p: 86% 5% 9% 0%  
[libx264 @ 0000000002875660] i8 v,h,dc,ddl,ddr,vr,hd,vl,hu: 54% 5% 41% 0% 0%
0% 0% 0% 0%  
[libx264 @ 0000000002875660] i4 v,h,dc,ddl,ddr,vr,hd,vl,hu: 28% 17% 20% 6% 5%
6% 6% 7% 5%  
[libx264 @ 0000000002875660] i8c dc,h,v,p: 95% 2% 3% 1%  
[libx264 @ 0000000002875660] Weighted P-Frames: Y:0.0% UV:0.0%  
[libx264 @ 0000000002875660] ref P L0: 80.0% 10.0% 7.7% 2.3%  
[libx264 @ 0000000002875660] ref B L0: 94.4% 5.6%  
[libx264 @ 0000000002875660] ref B L1: 95.7% 4.3%  
[libx264 @ 0000000002875660] kb/s:5140.80  
Conversion failed!  
  
An error occurred during encoding. See Reply Log for details.  
  
Error during MPEG encoding:  
\-----------------------------  
Exit value: 1  
Error message:  
stdout:  
  
stderr:  
ffmpeg version 3.2.4 Copyright (c) 2000-2017 the FFmpeg developers  
built with gcc 6.3.0 (GCC)  
configuration: --enable-gpl --enable-version3 --enable-d3d11va --enable-dxva2
--enable-libmfx --enable-nvenc --enable-avisynth --enable-bzlib --enable-
fontconfig --enable-frei0r --enable-gnutls --enable-iconv --enable-libass
--enable-libbluray --enable-libbs2b --enable-libcaca --enable-libfreetype
--enable-libgme --enable-libgsm --enable-libilbc --enable-libmodplug --enable-
libmp3lame --enable-libopencore-amrnb --enable-libopencore-amrwb --enable-
libopenh264 --enable-libopenjpeg --enable-libopus --enable-librtmp --enable-
libsnappy --enable-libsoxr --enable-libspeex --enable-libtheora --enable-
libtwolame --enable-libvidstab --enable-libvo-amrwbenc --enable-libvorbis
--enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx264
--enable-libx265 --enable-libxavs --enable-libxvid --enable-libzimg --enable-
lzma --enable-zlib  
libavutil 55. 34.101 / 55. 34.101  
libavcodec 57. 64.101 / 57. 64.101  
libavformat 57. 56.101 / 57. 56.101  
libavdevice 57. 1.100 / 57. 1.100  
libavfilter 6. 65.100 / 6. 65.100  
libswscale 4. 2.100 / 4. 2.100  
libswresample 2. 3.100 / 2. 3.100  
libpostproc 54. 1.100 / 54. 1.100  
Input #0, image2, from
'C:\Users\2646197\AppData\Local\Temp\chimovie_ZaOQ-%05d.ppm':  
Duration: 00:00:00.24, start: 0.000000, bitrate: N/A  
Stream #0:0: Video: ppm, rgb24, 1343x819, 25 tbr, 25 tbn, 25 tbc  
[libx264 @ 0000000002875660] using cpu capabilities: MMX2 SSE2Fast SSSE3
SSE4.2 AVX FMA3 AVX2 LZCNT BMI2  
[libx264 @ 0000000002875660] profile High, level 3.2  
[libx264 @ 0000000002875660] 264 - core 148 r2762 90a61ec - H.264/MPEG-4 AVC
codec - Copyleft 2003-2017 - http://www.videolan.org/x264.html - options:
cabac=1 ref=3 deblock=1:0:0 analyse=0x3:0x113 me=hex subme=7 psy=1
psy_rd=1.00:0.00 mixed_ref=1 me_range=16 chroma_me=1 trellis=1 8x8dct=1 cqm=0
deadzone=21,11 fast_pskip=1 chroma_qp_offset=-2 threads=6 lookahead_threads=1
sliced_threads=0 nr=0 decimate=1 interlaced=0 bluray_compat=0
constrained_intra=0 bframes=3 b_pyramid=2 b_adapt=1 b_bias=0 direct=1
weightb=1 open_gop=0 weightp=2 keyint=250 keyint_min=25 scenecut=40
intra_refresh=0 rc_lookahead=40 rc=crf mbtree=1 crf=20.0 qcomp=0.60 qpmin=0
qpmax=69 qpstep=4 ip_ratio=1.40 aq=1:1.00  
Output #0, mp4, to 'C:\Program Files\ChimeraX\bin\movie1.mp4':  
Metadata:  
encoder : Lavf57.56.101  
Stream #0:0: Video: h264 (libx264) ([33][0][0][0] / 0x0021), yuv420p,
1342x818, q=-1--1, 25 fps, 12800 tbn, 25 tbc  
Metadata:  
encoder : Lavc57.64.101 libx264  
Side data:  
cpb: bitrate max/min/avg: 0/0/0 buffer size: 0 vbv_delay: -1  
Stream mapping:  
Stream #0:0 -> #0:0 (ppm (native) -> h264 (libx264))  
Press [q] to stop, [?] for help  
av_interleaved_write_frame(): No space left on device  
Error writing trailer of C:\Program Files\ChimeraX\bin\movie1.mp4: No space
left on deviceframe= 6 fps=0.0 q=25.0 Lsize= 32kB time=-00:00:00.07
bitrate=N/A speed=N/A  
video:40kB audio:0kB subtitle:0kB other streams:0kB global headers:0kB muxing
overhead: unknown  
[libx264 @ 0000000002875660] frame I:1 Avg QP:18.80 size: 40673  
[libx264 @ 0000000002875660] frame P:2 Avg QP:26.14 size: 27299  
[libx264 @ 0000000002875660] frame B:3 Avg QP:28.36 size: 19651  
[libx264 @ 0000000002875660] consecutive B-frames: 33.3% 0.0% 0.0% 66.7%  
[libx264 @ 0000000002875660] mb I I16..4: 26.5% 55.4% 18.1%  
[libx264 @ 0000000002875660] mb P I16..4: 0.5% 2.3% 6.2% P16..4: 5.7% 5.1%
4.3% 0.0% 0.0% skip:75.9%  
[libx264 @ 0000000002875660] mb B I16..4: 0.1% 0.4% 1.2% B16..8: 8.0% 7.3%
5.9% direct: 0.8% skip:76.4% L0:46.3% L1:36.5% BI:17.2%  
[libx264 @ 0000000002875660] 8x8 transform intra:49.7% inter:8.1%  
[libx264 @ 0000000002875660] coded y,uvDC,uvAC intra: 19.9% 10.4% 9.8% inter:
7.1% 4.1% 4.0%  
[libx264 @ 0000000002875660] i16 v,h,dc,p: 86% 5% 9% 0%  
[libx264 @ 0000000002875660] i8 v,h,dc,ddl,ddr,vr,hd,vl,hu: 54% 5% 41% 0% 0%
0% 0% 0% 0%  
[libx264 @ 0000000002875660] i4 v,h,dc,ddl,ddr,vr,hd,vl,hu: 28% 17% 20% 6% 5%
6% 6% 7% 5%  
[libx264 @ 0000000002875660] i8c dc,h,v,p: 95% 2% 3% 1%  
[libx264 @ 0000000002875660] Weighted P-Frames: Y:0.0% UV:0.0%  
[libx264 @ 0000000002875660] ref P L0: 80.0% 10.0% 7.7% 2.3%  
[libx264 @ 0000000002875660] ref B L0: 94.4% 5.6%  
[libx264 @ 0000000002875660] ref B L1: 95.7% 4.3%  
[libx264 @ 0000000002875660] kb/s:5140.80  
Conversion failed!  
  
\-----------------------------  
  

> save "C:\Program Files\ChimeraX\bin\image3.png" supersample 3

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> movie record

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> turn y 2 180

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  

> wait 180

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\movie\movie.py", line 172, in capture_image  
i.save(save_path, self.img_fmt)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\PIL\Image.py", line
2320, in save  
save_handler(self, fp, filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\PIL\PpmImagePlugin.py",
line 324, in _save  
ImageFile._save(im, fp, [("raw", (0, 0) + im.size, 0, (rawmode, 0, 1))])  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\PIL\ImageFile.py", line
524, in _save  
s = encoder.encode_to_file(fh, bufsize)  
OSError: [Errno 28] No space left on device  
  
Error processing trigger "frame drawn":  
OSError: [Errno 28] No space left on device  
  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\PIL\ImageFile.py", line
524, in _save  
s = encoder.encode_to_file(fh, bufsize)  
  
See log for complete Python traceback.  
  

> movie encode "C:\Program Files\ChimeraX\bin\movie1.mp4"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 350, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 452, in add  
self._history.enqueue((item, typed))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue  
self.save()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save  
self._history.save(self._queue)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 180, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
Error processing trigger "command started":  
PermissionError: [Errno 13] Permission denied:
'C:\\\Users\\\2646197\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.12312.tmp'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\safesave.py", line 179, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  
C:\Program Files\ChimeraX\bin\ffmpeg.exe -r 25 -i
C:\Users\2646197\AppData\Local\Temp\chimovie_ZaOQ-%05d.ppm -vf
crop=floor(in_w/2)*2:floor(in_h/2)*2:0:0 -y -vcodec libx264 -f mp4 -pix_fmt
yuv420p -crf 20 C:\Program Files\ChimeraX\bin\movie1.mp4  
stdout:  
  
stderr:  
ffmpeg version 3.2.4 Copyright (c) 2000-2017 the FFmpeg developers  
built with gcc 6.3.0 (GCC)  
configuration: --enable-gpl --enable-version3 --enable-d3d11va --enable-dxva2
--enable-libmfx --enable-nvenc --enable-avisynth --enable-bzlib --enable-
fontconfig --enable-frei0r --enable-gnutls --enable-iconv --enable-libass
--enable-libbluray --enable-libbs2b --enable-libcaca --enable-libfreetype
--enable-libgme --enable-libgsm --enable-libilbc --enable-libmodplug --enable-
libmp3lame --enable-libopencore-amrnb --enable-libopencore-amrwb --enable-
libopenh264 --enable-libopenjpeg --enable-libopus --enable-librtmp --enable-
libsnappy --enable-libsoxr --enable-libspeex --enable-libtheora --enable-
libtwolame --enable-libvidstab --enable-libvo-amrwbenc --enable-libvorbis
--enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx264
--enable-libx265 --enable-libxavs --enable-libxvid --enable-libzimg --enable-
lzma --enable-zlib  
libavutil 55. 34.101 / 55. 34.101  
libavcodec 57. 64.101 / 57. 64.101  
libavformat 57. 56.101 / 57. 56.101  
libavdevice 57. 1.100 / 57. 1.100  
libavfilter 6. 65.100 / 6. 65.100  
libswscale 4. 2.100 / 4. 2.100  
libswresample 2. 3.100 / 2. 3.100  
libpostproc 54. 1.100 / 54. 1.100  
Input #0, image2, from
'C:\Users\2646197\AppData\Local\Temp\chimovie_ZaOQ-%05d.ppm':  
Duration: 00:00:00.24, start: 0.000000, bitrate: N/A  
Stream #0:0: Video: ppm, rgb24, 1343x819, 25 tbr, 25 tbn, 25 tbc  
[libx264 @ 0000000000dc5660] using cpu capabilities: MMX2 SSE2Fast SSSE3
SSE4.2 AVX FMA3 AVX2 LZCNT BMI2  
[libx264 @ 0000000000dc5660] profile High, level 3.2  
[libx264 @ 0000000000dc5660] 264 - core 148 r2762 90a61ec - H.264/MPEG-4 AVC
codec - Copyleft 2003-2017 - http://www.videolan.org/x264.html - options:
cabac=1 ref=3 deblock=1:0:0 analyse=0x3:0x113 me=hex subme=7 psy=1
psy_rd=1.00:0.00 mixed_ref=1 me_range=16 chroma_me=1 trellis=1 8x8dct=1 cqm=0
deadzone=21,11 fast_pskip=1 chroma_qp_offset=-2 threads=6 lookahead_threads=1
sliced_threads=0 nr=0 decimate=1 interlaced=0 bluray_compat=0
constrained_intra=0 bframes=3 b_pyramid=2 b_adapt=1 b_bias=0 direct=1
weightb=1 open_gop=0 weightp=2 keyint=250 keyint_min=25 scenecut=40
intra_refresh=0 rc_lookahead=40 rc=crf mbtree=1 crf=20.0 qcomp=0.60 qpmin=0
qpmax=69 qpstep=4 ip_ratio=1.40 aq=1:1.00  
Output #0, mp4, to 'C:\Program Files\ChimeraX\bin\movie1.mp4':  
Metadata:  
encoder : Lavf57.56.101  
Stream #0:0: Video: h264 (libx264) ([33][0][0][0] / 0x0021), yuv420p,
1342x818, q=-1--1, 25 fps, 12800 tbn, 25 tbc  
Metadata:  
encoder : Lavc57.64.101 libx264  
Side data:  
cpb: bitrate max/min/avg: 0/0/0 buffer size: 0 vbv_delay: -1  
Stream mapping:  
Stream #0:0 -> #0:0 (ppm (native) -> h264 (libx264))  
Press [q] to stop, [?] for help  
av_interleaved_write_frame(): No space left on device  
Error writing trailer of C:\Program Files\ChimeraX\bin\movie1.mp4: No space
left on deviceframe= 6 fps=0.0 q=-1.0 Lsize= 74kB time=00:00:00.00
bitrate=7725641.0kbits/s speed=0.000441x  
video:98kB audio:0kB subtitle:0kB other streams:0kB global headers:0kB muxing
overhead: unknown  
[libx264 @ 0000000000dc5660] frame I:1 Avg QP:18.80 size: 40673  
[libx264 @ 0000000000dc5660] frame P:2 Avg QP:26.14 size: 27299  
[libx264 @ 0000000000dc5660] frame B:3 Avg QP:28.36 size: 19651  
[libx264 @ 0000000000dc5660] consecutive B-frames: 33.3% 0.0% 0.0% 66.7%  
[libx264 @ 0000000000dc5660] mb I I16..4: 26.5% 55.4% 18.1%  
[libx264 @ 0000000000dc5660] mb P I16..4: 0.5% 2.3% 6.2% P16..4: 5.7% 5.1%
4.3% 0.0% 0.0% skip:75.9%  
[libx264 @ 0000000000dc5660] mb B I16..4: 0.1% 0.4% 1.2% B16..8: 8.0% 7.3%
5.9% direct: 0.8% skip:76.4% L0:46.3% L1:36.5% BI:17.2%  
[libx264 @ 0000000000dc5660] 8x8 transform intra:49.7% inter:8.1%  
[libx264 @ 0000000000dc5660] coded y,uvDC,uvAC intra: 19.9% 10.4% 9.8% inter:
7.1% 4.1% 4.0%  
[libx264 @ 0000000000dc5660] i16 v,h,dc,p: 86% 5% 9% 0%  
[libx264 @ 0000000000dc5660] i8 v,h,dc,ddl,ddr,vr,hd,vl,hu: 54% 5% 41% 0% 0%
0% 0% 0% 0%  
[libx264 @ 0000000000dc5660] i4 v,h,dc,ddl,ddr,vr,hd,vl,hu: 28% 17% 20% 6% 5%
6% 6% 7% 5%  
[libx264 @ 0000000000dc5660] i8c dc,h,v,p: 95% 2% 3% 1%  
[libx264 @ 0000000000dc5660] Weighted P-Frames: Y:0.0% UV:0.0%  
[libx264 @ 0000000000dc5660] ref P L0: 80.0% 10.0% 7.7% 2.3%  
[libx264 @ 0000000000dc5660] ref B L0: 94.4% 5.6%  
[libx264 @ 0000000000dc5660] ref B L1: 95.7% 4.3%  
[libx264 @ 0000000000dc5660] kb/s:5140.80  
Conversion failed!  
  
An error occurred during encoding. See Reply Log for details.  
  
Error during MPEG encoding:  
\-----------------------------  
Exit value: 1  
Error message:  
stdout:  
  
stderr:  
ffmpeg version 3.2.4 Copyright (c) 2000-2017 the FFmpeg developers  
built with gcc 6.3.0 (GCC)  
configuration: --enable-gpl --enable-version3 --enable-d3d11va --enable-dxva2
--enable-libmfx --enable-nvenc --enable-avisynth --enable-bzlib --enable-
fontconfig --enable-frei0r --enable-gnutls --enable-iconv --enable-libass
--enable-libbluray --enable-libbs2b --enable-libcaca --enable-libfreetype
--enable-libgme --enable-libgsm --enable-libilbc --enable-libmodplug --enable-
libmp3lame --enable-libopencore-amrnb --enable-libopencore-amrwb --enable-
libopenh264 --enable-libopenjpeg --enable-libopus --enable-librtmp --enable-
libsnappy --enable-libsoxr --enable-libspeex --enable-libtheora --enable-
libtwolame --enable-libvidstab --enable-libvo-amrwbenc --enable-libvorbis
--enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx264
--enable-libx265 --enable-libxavs --enable-libxvid --enable-libzimg --enable-
lzma --enable-zlib  
libavutil 55. 34.101 / 55. 34.101  
libavcodec 57. 64.101 / 57. 64.101  
libavformat 57. 56.101 / 57. 56.101  
libavdevice 57. 1.100 / 57. 1.100  
libavfilter 6. 65.100 / 6. 65.100  
libswscale 4. 2.100 / 4. 2.100  
libswresample 2. 3.100 / 2. 3.100  
libpostproc 54. 1.100 / 54. 1.100  
Input #0, image2, from
'C:\Users\2646197\AppData\Local\Temp\chimovie_ZaOQ-%05d.ppm':  
Duration: 00:00:00.24, start: 0.000000, bitrate: N/A  
Stream #0:0: Video: ppm, rgb24, 1343x819, 25 tbr, 25 tbn, 25 tbc  
[libx264 @ 0000000000dc5660] using cpu capabilities: MMX2 SSE2Fast SSSE3
SSE4.2 AVX FMA3 AVX2 LZCNT BMI2  
[libx264 @ 0000000000dc5660] profile High, level 3.2  
[libx264 @ 0000000000dc5660] 264 - core 148 r2762 90a61ec - H.264/MPEG-4 AVC
codec - Copyleft 2003-2017 - http://www.videolan.org/x264.html - options:
cabac=1 ref=3 deblock=1:0:0 analyse=0x3:0x113 me=hex subme=7 psy=1
psy_rd=1.00:0.00 mixed_ref=1 me_range=16 chroma_me=1 trellis=1 8x8dct=1 cqm=0
deadzone=21,11 fast_pskip=1 chroma_qp_offset=-2 threads=6 lookahead_threads=1
sliced_threads=0 nr=0 decimate=1 interlaced=0 bluray_compat=0
constrained_intra=0 bframes=3 b_pyramid=2 b_adapt=1 b_bias=0 direct=1
weightb=1 open_gop=0 weightp=2 keyint=250 keyint_min=25 scenecut=40
intra_refresh=0 rc_lookahead=40 rc=crf mbtree=1 crf=20.0 qcomp=0.60 qpmin=0
qpmax=69 qpstep=4 ip_ratio=1.40 aq=1:1.00  
Output #0, mp4, to 'C:\Program Files\ChimeraX\bin\movie1.mp4':  
Metadata:  
encoder : Lavf57.56.101  
Stream #0:0: Video: h264 (libx264) ([33][0][0][0] / 0x0021), yuv420p,
1342x818, q=-1--1, 25 fps, 12800 tbn, 25 tbc  
Metadata:  
encoder : Lavc57.64.101 libx264  
Side data:  
cpb: bitrate max/min/avg: 0/0/0 buffer size: 0 vbv_delay: -1  
Stream mapping:  
Stream #0:0 -> #0:0 (ppm (native) -> h264 (libx264))  
Press [q] to stop, [?] for help  
av_interleaved_write_frame(): No space left on device  
Error writing trailer of C:\Program Files\ChimeraX\bin\movie1.mp4: No space
left on deviceframe= 6 fps=0.0 q=-1.0 Lsize= 74kB time=00:00:00.00
bitrate=7725641.0kbits/s speed=0.000441x  
video:98kB audio:0kB subtitle:0kB other streams:0kB global headers:0kB muxing
overhead: unknown  
[libx264 @ 0000000000dc5660] frame I:1 Avg QP:18.80 size: 40673  
[libx264 @ 0000000000dc5660] frame P:2 Avg QP:26.14 size: 27299  
[libx264 @ 0000000000dc5660] frame B:3 Avg QP:28.36 size: 19651  
[libx264 @ 0000000000dc5660] consecutive B-frames: 33.3% 0.0% 0.0% 66.7%  
[libx264 @ 0000000000dc5660] mb I I16..4: 26.5% 55.4% 18.1%  
[libx264 @ 0000000000dc5660] mb P I16..4: 0.5% 2.3% 6.2% P16..4: 5.7% 5.1%
4.3% 0.0% 0.0% skip:75.9%  
[libx264 @ 0000000000dc5660] mb B I16..4: 0.1% 0.4% 1.2% B16..8: 8.0% 7.3%
5.9% direct: 0.8% skip:76.4% L0:46.3% L1:36.5% BI:17.2%  
[libx264 @ 0000000000dc5660] 8x8 transform intra:49.7% inter:8.1%  
[libx264 @ 0000000000dc5660] coded y,uvDC,uvAC intra: 19.9% 10.4% 9.8% inter:
7.1% 4.1% 4.0%  
[libx264 @ 0000000000dc5660] i16 v,h,dc,p: 86% 5% 9% 0%  
[libx264 @ 0000000000dc5660] i8 v,h,dc,ddl,ddr,vr,hd,vl,hu: 54% 5% 41% 0% 0%
0% 0% 0% 0%  
[libx264 @ 0000000000dc5660] i4 v,h,dc,ddl,ddr,vr,hd,vl,hu: 28% 17% 20% 6% 5%
6% 6% 7% 5%  
[libx264 @ 0000000000dc5660] i8c dc,h,v,p: 95% 2% 3% 1%  
[libx264 @ 0000000000dc5660] Weighted P-Frames: Y:0.0% UV:0.0%  
[libx264 @ 0000000000dc5660] ref P L0: 80.0% 10.0% 7.7% 2.3%  
[libx264 @ 0000000000dc5660] ref B L0: 94.4% 5.6%  
[libx264 @ 0000000000dc5660] ref B L1: 95.7% 4.3%  
[libx264 @ 0000000000dc5660] kb/s:5140.80  
Conversion failed!  
  
\-----------------------------  
  




OpenGL version: 3.3.0 NVIDIA 473.70
OpenGL renderer: NVIDIA GeForce GT 730/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: en_GB.cp1252
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: windows

Manufacturer: HP
Model: HP EliteDesk 800 G3 SFF
OS: Microsoft Windows 10 Education (Build 19045)
Memory: 17,053,212,672
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i5-6500 CPU @ 3.20GHz
OSLanguage: en-GB

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2022.9.24
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    comtypes: 1.1.10
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.4
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.1.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.1.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.33
    psutil: 5.9.1
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.6
    pywin32: 303
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.3.0
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    setuptools: 65.1.1
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    urllib3: 1.26.13
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    WMI: 1.5.1
    zipp: 3.11.0

Change History (1)

comment:1 by Eric Pettersen, 16 months ago

Cc:	Tom Goddard added
Component:	Unassigned → Input/Output
Owner:	set to Greg Couch
Platform:	→ all
Project:	→ ChimeraX
Status:	new → assigned
Summary:	ChimeraX bug report submission → Permission denied writing setting/history files

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