Ticket #15497: ChimeraX_window_issue.txt

File ChimeraX_window_issue.txt, 2.2 KB (added by mbopf@…, 16 months ago)

Added by email2trac

Line 
1INFO prefect.ShellTask:shell.py:151 Executing: runscript /var/lib/actions-runner/_work/nih_3d_workflows/nih_3d_workflows/nih_3d_workflows/cli_scripts/cx_unified.py --outdir /tmp/nih3d_job_e3yud5kh --voxel_size_file /tmp/nih3d_job_e3yud5kh/voxel_size.json --pixel_spacing_file /tmp/nih3d_job_e3yud5kh/pixel_spacing.json --molecule_size_file /tmp/nih3d_job_e3yud5kh/molecule_size.json --molecular_weight_file /tmp/nih3d_job_e3yud5kh/molecular_weight.json --messages_file /tmp/nih3d_job_e3yud5kh/messages.json --alphafold P00520 --source_data_file_path /tmp/nih3d_job_e3yud5kh/P00520.cif
2INFO prefect.ShellTask:shell.py:151 Cache directory /home/nih3duser/Downloads/ChimeraX/AlphaFold doesn't exist
3INFO prefect.ShellTask:shell.py:151 INFO:
4INFO prefect.ShellTask:shell.py:151 Executing: open P00520 fromDatabase alphafold pae true autoStyle false
5INFO prefect.ShellTask:shell.py:151 STATUS:
6INFO prefect.ShellTask:shell.py:151 Fetching AlphaFold database settings, 0.000609 of 0.000609 Mbytes received
7INFO prefect.ShellTask:shell.py:151 STATUS:
8INFO prefect.ShellTask:shell.py:151 Fetching AlphaFold P00520, 0.205 of 0.205 Mbytes received
9INFO prefect.ShellTask:shell.py:151 STATUS:
10INFO prefect.ShellTask:shell.py:151 Fetching AlphaFold PAE P00520, 0.345 of 0.345 Mbytes received
11INFO prefect.ShellTask:shell.py:151 INFO:
12INFO prefect.ShellTask:shell.py:151 Summary of feedback from opening P00520 fetched from alphafold
13INFO prefect.ShellTask:shell.py:151 ---
14INFO prefect.ShellTask:shell.py:151 _notes_ | Fetching AlphaFold database settings from https://www.rbvi.ucsf.edu/chimerax/data/status/alphafold_database3.json
15INFO prefect.ShellTask:shell.py:151 Fetching compressed AlphaFold P00520 from
16INFO prefect.ShellTask:shell.py:151 https://alphafold.ebi.ac.uk/files/AF-P00520-F1-model_v4.cif
17INFO prefect.ShellTask:shell.py:151 Fetching compressed AlphaFold PAE P00520 from
18INFO prefect.ShellTask:shell.py:151 https://alphafold.ebi.ac.uk/files/AF-P00520-F1-predicted_aligned_error_v4.json
19INFO prefect.ShellTask:shell.py:151
20INFO prefect.ShellTask:shell.py:151
21INFO prefect.ShellTask:shell.py:151 NIH3D FATAL ERROR: Could not open P00520 from alphafold pae true: 'UI' object has no attribute 'main_window'