Color Actions: can only concatenate str (not "NoneType") to str

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.22631
ChimeraX Version: 1.8rc202405202242 (2024-05-20 22:42:21 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
notes | available bundle cache has not been initialized yet  
Database-fetch provider 'redo' in bundle Map specified unknown data format
'MTZ'  
  
UCSF ChimeraX version: 1.8rc202405202242 (2024-05-20)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:/Users/Edwin/Downloads/Priscila_Favor/2xu1.pdb

2xu1.pdb title:  
Cathepsin L with A nitrile inhibitor [more info...]  
  
Chain information for 2xu1.pdb #1  
---  
Chain | Description | UniProt  
A B C D | cathepsin L1 | CATL1_HUMAN 1-220  
  
Non-standard residues in 2xu1.pdb #1  
---  
424 —
(2S,4R)-1-[1-(4-chlorophenyl)cyclopropyl]carbonyl-4-(2-chlorophenyl)sulfonyl-N-[1-(iminomethyl)cyclopropyl]pyrrolidine-2-carboxamide  
  
141 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  

> select /B

1948 atoms, 1779 bonds, 440 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> select /A

1904 atoms, 1742 bonds, 1 pseudobond, 427 residues, 2 models selected  

> select ~sel

3703 atoms, 3512 bonds, 1 pseudobond, 726 residues, 2 models selected  

> delete atoms (#!1 & sel)

> delete bonds (#!1 & sel)

> select /A

1904 atoms, 1742 bonds, 1 pseudobond, 427 residues, 2 models selected  

> select clear

> set bgColor white

> lighting simple

> lighting soft

> lighting full

> lighting shadows false

> graphics silhouettes true

> lighting flat

[Repeated 1 time(s)]

> lighting shadows true intensity 0.5

> graphics silhouettes false

> lighting shadows false

> lighting simple

> lighting shadows true

> graphics silhouettes true

> select 25

Expected an objects specifier or a keyword  

> select 25

Expected an objects specifier or a keyword  

> select ::name="424"

35 atoms, 39 bonds, 1 residue, 1 model selected  

> hide sel target a

> select /A:25@SG

1 atom, 1 residue, 1 model selected  

> select /A:163@ND1

1 atom, 1 residue, 1 model selected  

> select /A:163

10 atoms, 10 bonds, 1 residue, 1 model selected  

> label sel attribute name

> select clear

> select /A:25@CB

1 atom, 1 residue, 1 model selected  

> label sel attribute name

> select /A:19@CD

1 atom, 1 residue, 1 model selected  

> select /A:32

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select /A:19@CD

1 atom, 1 residue, 1 model selected  

> select clear

> select /A:165

7 atoms, 6 bonds, 1 residue, 1 model selected  

> show sel target ab

> select /A:164

4 atoms, 3 bonds, 1 residue, 1 model selected  

> show sel target ab

[Repeated 1 time(s)]

> cartoon hide sel

> undo

> label sel attribute name

> select clear

> select ::name="424"

35 atoms, 39 bonds, 1 residue, 1 model selected  

> show sel target ab

> show sel surfaces

[Repeated 1 time(s)]

> hide sel surfaces

> select clear

> show surfaces

> transparency 90

> cartoon hide

> surface style solid

> show cartoons

> hide surfaces

> color byhetero

> select /A

1904 atoms, 1742 bonds, 1 pseudobond, 427 residues, 2 models selected  

> color (#!1 & sel) light gray

> select clear

> select /A:163

10 atoms, 10 bonds, 1 residue, 1 model selected  

> select /A:163

10 atoms, 10 bonds, 1 residue, 1 model selected  

> color (#!1 & sel) byhetero

> select /A:25

6 atoms, 5 bonds, 1 residue, 1 model selected  

> color (#!1 & sel) byhetero

> select clear

> color red

> color orange

> select /A:25

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select add /A:163

16 atoms, 15 bonds, 2 residues, 2 models selected  

> color (#!1 & sel) byhetero

> select clear

[Repeated 1 time(s)]

> color cyan

> select clear

> select /A:25

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select add /A:164

10 atoms, 8 bonds, 2 residues, 2 models selected  

> select add /A:215

15 atoms, 12 bonds, 3 residues, 2 models selected  

> select add /A:163@CB

16 atoms, 12 bonds, 4 residues, 2 models selected  

> select clear

> select /A:164

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select /A:163

10 atoms, 10 bonds, 1 residue, 1 model selected  

> select add /A:164

14 atoms, 13 bonds, 2 residues, 2 models selected  

> select /A:164

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select add /A:163

14 atoms, 13 bonds, 2 residues, 2 models selected  

> color (#!1 & sel) byhetero

> select /A:25

6 atoms, 5 bonds, 1 residue, 1 model selected  

> color (#!1 & sel) light gray

> select /A:164

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select /A:163

10 atoms, 10 bonds, 1 residue, 1 model selected  

> color (#!1 & sel) light gray

> select /A:19@CD

1 atom, 1 residue, 1 model selected  

> select /A:19@CD

1 atom, 1 residue, 1 model selected  

> select /A:19@CD

1 atom, 1 residue, 1 model selected  

> color (#!1 & sel) light gray

> color (#!1 & sel) byelement

> color (#!1 & sel) byhetero

> select /A:19@CD

1 atom, 1 residue, 1 model selected  

> select clear

> select /A:19@CD

1 atom, 1 residue, 1 model selected  

> color (#!1 & sel) byhetero

> undo

[Repeated 9 time(s)]

> color byhetero

> select /A:19@CD

1 atom, 1 residue, 1 model selected  

> color (#!1 & sel) light gray

> select /A:164

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select /A:164

4 atoms, 3 bonds, 1 residue, 1 model selected  

> ~label (#!1 & sel) residues

> select /A:19@CD

1 atom, 1 residue, 1 model selected  

> select /A:19@CD

1 atom, 1 residue, 1 model selected  

> select /A:19@CD

1 atom, 1 residue, 1 model selected  

> label (#!1 & sel) attribute name

> select ::name="HOH"

211 atoms, 211 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> save C:/Users/Edwin/Downloads/Priscila_Favor/Afastada_1.png width 1600
> height 631 supersample 3

> select sequence 175

Nothing selected  

> select /A:164

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select /A:162

8 atoms, 7 bonds, 1 residue, 1 model selected  

> hide (#!1 & sel) target a

> show (#!1 & sel) target ab

> cartoon hide (#!1 & sel)

> cartoon (#!1 & sel)

> select clear

[Repeated 2 time(s)]

> select /A:162

8 atoms, 7 bonds, 1 residue, 1 model selected  

> hide #* target a

> show (#!1 & sel) target ab

> undo

[Repeated 1 time(s)]

> show (#!1 & sel) target ab

> color (#!1 & sel) orange red

> undo

> select clear

> color red

> color orange red

> ui tool show "Color Actions"

> color crimson

> color red

> color crimson target c

> color byhetero target a

> color byelement target a

> color slate blue target l

> color black target l

> color red target c

[Repeated 3 time(s)]

> select /A:162

8 atoms, 7 bonds, 1 residue, 1 model selected  

> label (#!1 & sel) attribute name

> select /A:29

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select clear

> select /A:164

4 atoms, 3 bonds, 1 residue, 1 model selected  

> label (#!1 & sel) attribute name

> select clear

> view

[Repeated 7 time(s)]

> set bgColor gray

> set bgColor white

> set bgColor black

> set bgColor white

> lighting shadows false

> lighting shadows true

> lighting shadows false

> ui tool show "Color Actions"

> color blue target l

> color olive target l

> color lime target l

> color lawn green target l

> color lime green target l

> color deep pink target l

> color rebecca purple target l

> color slate blue target l

> color medium slate blue target l

> color dim gray target l

> color gray target l

> color plum target l

> color gainsboro target l

> color lavender target l

> set bgColor black

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8rc202405202242\bin\Lib\site-
packages\chimerax\color_actions\tool.py", line 188, in <lambda>  
button.released.connect(lambda *, clr=spaced_name: self._color(clr))  
^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8rc202405202242\bin\Lib\site-
packages\chimerax\color_actions\tool.py", line 226, in _color  
commands.append("color "  
^^^^^^^^  
TypeError: can only concatenate str (not "NoneType") to str  
  
TypeError: can only concatenate str (not "NoneType") to str  
  
File "C:\Program Files\ChimeraX 1.8rc202405202242\bin\Lib\site-
packages\chimerax\color_actions\tool.py", line 226, in _color  
commands.append("color "  
^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8rc202405202242\bin\Lib\site-
packages\chimerax\color_actions\tool.py", line 188, in <lambda>  
button.released.connect(lambda *, clr=spaced_name: self._color(clr))  
^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8rc202405202242\bin\Lib\site-
packages\chimerax\color_actions\tool.py", line 226, in _color  
commands.append("color "  
^^^^^^^^  
TypeError: can only concatenate str (not "NoneType") to str  
  
TypeError: can only concatenate str (not "NoneType") to str  
  
File "C:\Program Files\ChimeraX 1.8rc202405202242\bin\Lib\site-
packages\chimerax\color_actions\tool.py", line 226, in _color  
commands.append("color "  
^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8rc202405202242\bin\Lib\site-
packages\chimerax\color_actions\tool.py", line 188, in <lambda>  
button.released.connect(lambda *, clr=spaced_name: self._color(clr))  
^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8rc202405202242\bin\Lib\site-
packages\chimerax\color_actions\tool.py", line 226, in _color  
commands.append("color "  
^^^^^^^^  
TypeError: can only concatenate str (not "NoneType") to str  
  
TypeError: can only concatenate str (not "NoneType") to str  
  
File "C:\Program Files\ChimeraX 1.8rc202405202242\bin\Lib\site-
packages\chimerax\color_actions\tool.py", line 226, in _color  
commands.append("color "  
^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8rc202405202242\bin\Lib\site-
packages\chimerax\color_actions\tool.py", line 188, in <lambda>  
button.released.connect(lambda *, clr=spaced_name: self._color(clr))  
^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8rc202405202242\bin\Lib\site-
packages\chimerax\color_actions\tool.py", line 226, in _color  
commands.append("color "  
^^^^^^^^  
TypeError: can only concatenate str (not "NoneType") to str  
  
TypeError: can only concatenate str (not "NoneType") to str  
  
File "C:\Program Files\ChimeraX 1.8rc202405202242\bin\Lib\site-
packages\chimerax\color_actions\tool.py", line 226, in _color  
commands.append("color "  
^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 - Build 31.0.101.4953
OpenGL renderer: Intel(R) UHD Graphics 770
OpenGL vendor: Intel

Python: 3.11.4
Locale: pt_BR.cp1252
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: windows

Manufacturer: Dell Inc.
Model: Vostro 3710
OS: Microsoft Windows 11 Pro (Build 22631)
Memory: 16,853,479,424
MaxProcessMemory: 137,438,953,344
CPU: 20 12th Gen Intel(R) Core(TM) i7-12700
OSLanguage: pt-BR

Installed Packages:
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    appdirs: 1.4.4
    asttokens: 2.4.1
    Babel: 2.15.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 1.2.1
    certifi: 2024.2.2
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.17
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.7
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.57
    ChimeraX-AtomicLibrary: 14.0.5
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.4.6
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.12.1
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    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
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    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.4
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.8rc202405202242
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.3
    ChimeraX-DiffPlot: 1.0
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
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    ChimeraX-IUPAC: 1.0
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    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
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    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.3
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    ChimeraX-MMTF: 2.2
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    ChimeraX-ModelPanel: 1.5
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    ChimeraX-Neuron: 1.0
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    ChimeraX-PresetMgr: 1.1.1
    ChimeraX-PubChem: 2.2
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    ChimeraX-RenumberResidues: 1.1
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    ChimeraX-RestServer: 1.2
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    ChimeraX-RotamerLibsDunbrack: 2.0
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    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
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    ChimeraX-Test: 1.0
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    ChimeraX-Tug: 1.0.1
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    WMI: 1.5.1