![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Mar 17, 2023:
- 2:38 PM Ticket #8667 (Crash in event loop) created by
- […]
- 2:33 PM Ticket #3634 (Test VR with Oculus Quest) closed by
- fixed: Have been using ChimeraX VR with Quest 2 for a couple years now and …
- 2:08 PM Ticket #8666 ('PasswordDialog' object has no attribute 'exec_') created by
- […]
- 12:16 PM Ticket #8665 (Error parsing DX file: map_data.readarray: could not convert string to ...) created by
- […]
- 10:53 AM Ticket #8641 (Remove Pandas from distribution if not used) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/4dcc30a1e22320e5f90b6f03454f8b …
- 1:23 AM Ticket #8664 (zonesel: NumPy array is not contiguous) created by
- […]
- 1:23 AM Ticket #8663 (zonesel: NumPy array is not contiguous) created by
- […]
- 1:20 AM Ticket #8662 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics) created by
- […]
Mar 16, 2023:
- 11:27 PM Ticket #8661 (ISOLDE: '_TriggerHandler' object has no attribute 'blocked') created by
- […]
- 3:45 PM Ticket #8659 (Windows daily build fails due to signing problem: "SignTool Error: No ...) closed by
- fixed: The Windows Certificate Manager did not have the current signing …
- 3:07 PM Ticket #8105 (ChimeraX/lib not on library path) closed by
- fixed: I found it! On Rocky, the executable in /usr/bin is a symbolic link to …
- 3:03 PM Ticket #8660 (Use equivalent of realpath(sys.executable) in launcher) created by
- Many areas of ChimeraX code depend on accurately knowing where the …
- 2:18 PM Ticket #8659 (Windows daily build fails due to signing problem: "SignTool Error: No ...) created by
- Windows daily build failed in the same way the last two nights. Maybe …
- 2:09 PM NIAID2022 edited by
- (diff)
- 2:07 PM NIAID2022 edited by
- (diff)
- 1:51 PM NIAID2022 edited by
- (diff)
- 12:52 PM Ticket #8656 (Crash showing open dialog) closed by
- can't reproduce
- 11:17 AM Ticket #8658 ('PickedPseudobond' object has no attribute 'group') created by
- […]
- 10:48 AM Ticket #8657 (Show/hide map from model pane resets scroll bar) created by
- […]
- 7:10 AM Ticket #8656 (Crash showing open dialog) created by
- […]
Mar 15, 2023:
- 2:07 PM phenix-3-16-23 edited by
- (diff)
- 2:05 PM phenix-3-16-23 edited by
- (diff)
- 1:33 PM phenix-3-16-23 edited by
- (diff)
- 1:32 PM phenix-3-16-23 edited by
- (diff)
- 1:31 PM phenix-3-16-23 edited by
- (diff)
- 1:11 PM phenix-3-16-23 created by
- 1:10 PM Features edited by
- (diff)
- 12:46 PM Ticket #8654 (Crash saving PNG) closed by
- duplicate: Duplicate. Only seen with ChimeraX 1.3, only Linux 3.10.
- 12:00 PM Ticket #8655 (Crash in fork at startup) closed by
- can't reproduce: Don't know what would fork at startup…
- 11:43 AM Ticket #8655 (Crash in fork at startup) created by
- […]
- 11:29 AM Ticket #8653 (Add Charges: Unknown class for change tracking: FakeAtom) closed by
- duplicate
- 11:26 AM Ticket #8652 (Crash in multishadow) closed by
- nonchimerax: ChimeraX crashed in your graphics driver. This is very likely a …
- 11:18 AM Ticket #8651 (ISOLDE: wrapped C/C++ object of type QTableWidget has been deleted) closed by
- duplicate: GUI has been reimplemented
- 11:11 AM Ticket #8650 (UniProt fetch: list index out of range) closed by
- duplicate
- 8:18 AM Ticket #8654 (Crash saving PNG) created by
- […]
- 7:57 AM Ticket #8653 (Add Charges: Unknown class for change tracking: FakeAtom) created by
- […]
- 7:56 AM Ticket #8652 (Crash in multishadow) created by
- […]
- 3:53 AM Ticket #8651 (ISOLDE: wrapped C/C++ object of type QTableWidget has been deleted) created by
- […]
Mar 14, 2023:
- 8:04 PM Ticket #8650 (UniProt fetch: list index out of range) created by
- […]
- 12:44 PM Ticket #8649 (MD Viewer: self.atomLocation[0]: list index out of range) created by
- […]
- 11:15 AM Dev2022-3-13 edited by
- (diff)
- 11:14 AM Dev2022-3-13 edited by
- (diff)
- 11:04 AM Ticket #8648 (Crash in event loop) closed by
- can't reproduce
- 11:02 AM Ticket #8647 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:38 AM Ticket #8643 (Graphics crash, macOS 12.5, Intel HD Graphics 615) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:36 AM Ticket #8644 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) closed by
- duplicate
- 10:32 AM Ticket #8642 (mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') closed by
- duplicate: Hi Haaris, This bug was fixed in the 1.5 production release, so if …
- 10:20 AM Ticket #8640 (Crash clearing aniso_u6) closed by
- duplicate
- 10:16 AM Ticket #8639 (Crash in event loop) closed by
- can't reproduce
- 9:38 AM Ticket #8499 (Collate details about DICOM collections from series) closed by
- fixed
- 9:38 AM Ticket #8499 (Collate details about DICOM collections from series) reopened by
- 9:37 AM Ticket #8499 (Collate details about DICOM collections from series) closed by
- I have this working, but it's slow to download. Each collection (there …
- 7:59 AM Ticket #8648 (Crash in event loop) created by
- […]
- 7:56 AM Ticket #8647 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 5:58 AM Ticket #8646 (Map-fit scoring) created by
- […]
- 5:20 AM Ticket #8645 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 4:22 AM Ticket #8644 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) created by
- […]
- 3:28 AM Ticket #8643 (Graphics crash, macOS 12.5, Intel HD Graphics 615) created by
- […]
- 1:23 AM Ticket #8629 (Write mmCIF: 'NoneType' object has no attribute 'get') closed by
- fixed: Fixed bug when writing mmCIF if authoritative sequence information is …
- 1:21 AM Ticket #8642 (mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') created by
- […]
Mar 13, 2023:
- 5:50 PM Ticket #8626 (Automatically use Nucleic matrix when needed) closed by
- fixed: Smarter now. :-)
- 5:15 PM Ticket #8453 (Associate Download DICOM entries with corresponding TCIA webpage) closed by
- fixed: This should start working …
- 4:28 PM Dev2022-3-13 edited by
- (diff)
- 4:04 PM Ticket #8641 (Remove Pandas from distribution if not used) created by
- The ChimeraX distributions increased in size about 10% about a month …
- 3:50 PM Ticket #8640 (Crash clearing aniso_u6) created by
- […]
- 3:29 PM Ticket #8639 (Crash in event loop) created by
- […]
- 2:49 PM Ticket #8638 (libzmq is Intel only) closed by
- fixed
- 11:43 AM Ticket #8638 (libzmq is Intel only) created by
- […]
- 11:39 AM 2023-3-16 created by
- 11:37 AM Dev2022-3-13 created by
- 11:36 AM Dev2022-2-20 edited by
- (diff)
- 11:36 AM DeveloperMeetings edited by
- (diff)
- 11:34 AM Ticket #8633 (Fit in Map: Device not configured) closed by
- not a bug: User tried to use fit in map which tried to load the map at full …
- 11:21 AM Ticket #8637 (Crash clearing aniso_u6) closed by
- duplicate
- 11:20 AM Ticket #8636 (Crash clearing aniso_u6) closed by
- duplicate
- 11:19 AM Ticket #8635 (Crash showing tooltip (on non-existent screen?)) closed by
- can't reproduce
- 11:00 AM Ticket #8634 (Sequence viewer: row is None) closed by
- duplicate
- 10:54 AM Ticket #8632 (Crash in event loop after AlphaFold prediction) closed by
- can't reproduce
- 10:50 AM Ticket #8631 (wrapped C/C++ object of type QScreen has been deleted) closed by
- duplicate
- 10:48 AM Ticket #8630 (Crash in event loop) closed by
- can't reproduce
- 10:44 AM Ticket #8628 (FindHBond: More than 2 coplanar positions specified) closed by
- not a bug: Bad connectivity
- 10:14 AM Ticket #8637 (Crash clearing aniso_u6) created by
- […]
- 9:55 AM Ticket #8636 (Crash clearing aniso_u6) created by
- […]
- 1:48 AM Ticket #8635 (Crash showing tooltip (on non-existent screen?)) created by
- […]
Mar 11, 2023:
- 8:22 AM Ticket #8634 (Sequence viewer: row is None) created by
- […]
- 6:44 AM Ticket #8633 (Fit in Map: Device not configured) created by
- […]
Mar 11, 2023:
- 6:49 PM Ticket #8632 (Crash in event loop after AlphaFold prediction) created by
- […]
- 4:34 PM Ticket #8631 (wrapped C/C++ object of type QScreen has been deleted) created by
- […]
Mar 10, 2023:
- 7:23 PM Ticket #8630 (Crash in event loop) created by
- […]
- 5:33 PM Ticket #8621 (Have to change step to get NRRD images to render at the right size) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/ef17a9db44d1f30724e7c15b2c86fc …
- 10:37 AM Ticket #8578 (Haphazard tool tips) closed by
- can't reproduce: Reopen if you find a reproducible test case or additional clues.
- 9:27 AM Ticket #8629 (Write mmCIF: 'NoneType' object has no attribute 'get') created by
- […] Screenshot 2023-03-10 at 12.27.09 PM.png
- 6:36 AM Ticket #8628 (FindHBond: More than 2 coplanar positions specified) created by
- […]
Mar 9, 2023:
- 7:48 PM Ticket #8583 (sym: Tried to get the position of deleted drawing) closed by
- duplicate: Fixed 4 months ago just after 1.5 release. Duplicate of #8045.
- 7:13 PM Ticket #8605 (Various surface errors) closed by
- can't reproduce: The first four tracebacks indicate that surface.triangles contains …
- 6:41 PM Ticket #8549 (Various surface errors) closed by
- can't reproduce: None of the 3 surface calculation errors make sense. The first error …
- 5:06 PM Ticket #8623 (Centroid table: float() argument must be a string or a number, not ...) closed by
- fixed: Fix: …
- 4:48 PM Ticket #8586 ("view matrix" given degenerate matrix) closed by
- fixed: Fixed. Made code check for non-invertible matrices in view matrix …
- 4:34 PM Ticket #8614 (Crash in Atom::effective_coord playing RMF coordset) closed by
- fixed: Okay, I have applied a fix. Perhaps you could try tomorrow's daily …
- 4:14 PM Ticket #8620 ('ModellerScoringJob' object has no attribute 'results') closed by
- fixed: Score fetching had not been updated for changes to core/tasks
- 4:08 PM Ticket #8585 (Graphics crash, macOS 11.7, Intel Iris) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 2:57 PM Ticket #8611 (Graphics crash, macOS 13.0.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 2:56 PM Ticket #8612 (Graphics crash, macOS 11.6, Intel Iris Plus Graphics 650) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 2:51 PM Ticket #8619 (Move "ribbon" from experimental commands) closed by
- fixed: Moved ribbon command alias for cartoon from the exp_cmd (experimental …
- 2:22 PM Ticket #8622 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics 640) closed by
- nonchimerax: Apple Intel graphics crash.
- 2:08 PM 2023-3-9 edited by
- (diff)
- 1:30 PM Ticket #8625 (Crash clearing aniso_u6) closed by
- duplicate
- 1:27 PM Ticket #8624 (modeller refine: KeyError for seq.match_maps[chain]) closed by
- duplicate
- 1:18 PM Ticket #8627 (Graphics crash when DICOM has unexpected size relative to other images ...) created by
- […] …
- 1:06 PM Ticket #8617 (Crash clearing aniso_u6) closed by
- duplicate
- 10:56 AM Ticket #8626 (Automatically use Nucleic matrix when needed) created by
- […]
- 7:50 AM Ticket #8625 (Crash clearing aniso_u6) created by
- […]
- 7:40 AM Ticket #8624 (modeller refine: KeyError for seq.match_maps[chain]) created by
- […]
- 5:02 AM Ticket #8623 (Centroid table: float() argument must be a string or a number, not ...) created by
- […]
Mar 8, 2023:
- 11:47 PM Ticket #8622 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics 640) created by
- […]
- 9:59 PM Ticket #8621 (Have to change step to get NRRD images to render at the right size) created by
- Just as the title says; NRRD images occasionally initially display as …
- 5:41 PM Ticket #8620 ('ModellerScoringJob' object has no attribute 'results') created by
- […]
- 1:55 PM Ticket #8619 (Move "ribbon" from experimental commands) created by
- Ugh. I see the ribbon command is also in exp_cmds. Should fix that …
- 1:53 PM Ticket #7825 (Make getcrd give a warning or error if no atoms are specified.) closed by
- fixed: Will open separate ticket for moving "ribbon" from experimental commands.
- 1:40 PM Ticket #8618 (Adding a mouse mode to DICOM rearranges the medical image toolbar) created by
- Trying to add an experimental mouse mode to perform segmentations …
- 1:22 PM Ticket #8617 (Crash clearing aniso_u6) created by
- […]
- 1:12 PM Ticket #8616 (Multiple swapaa/na swaps) created by
- Allow swapaa/na to make multiple different swaps at once (they already …
- 1:05 PM Ticket #8615 (Crash clearing aniso_u6) closed by
- duplicate
- 12:58 PM Ticket #8615 (Crash clearing aniso_u6) created by
- […]
- 12:13 PM Ticket #8614 (Crash in Atom::effective_coord playing RMF coordset) created by
- […]
- 12:10 PM ChangeLog edited by
- (diff)
- 12:05 PM ChangeLog edited by
- (diff)
- 9:44 AM Ticket #1045 (Nucleic matchmaker error) closed by
- fixed
- 9:42 AM Ticket #8613 (Crash in garbage collection) closed by
- duplicate
- 8:48 AM Ticket #8613 (Crash in garbage collection) created by
- […]
- 3:04 AM Ticket #8612 (Graphics crash, macOS 11.6, Intel Iris Plus Graphics 650) created by
- […]
Mar 7, 2023:
- 5:01 PM 2023-3-9 created by
- 5:00 PM DeveloperMeetings edited by
- (diff)
- 4:59 PM Ticket #8610 (Surface calculation: cannot convert float NaN to integer) closed by
- nonchimerax: Appears that the PDB file has NaN coordinates. I think our PDB file …
- 4:55 PM Ticket #8608 (Crash creating QWebEngineProfile at startup) closed by
- can't reproduce
- 11:16 AM Ticket #8606 (No sequences in file) closed by
- fixed: Converted no-sequences error to UserError
- 10:25 AM Ticket #8611 (Graphics crash, macOS 13.0.1, Intel Iris Plus Graphics) created by
- […]
- 9:03 AM Ticket #8609 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 8:55 AM Ticket #8604 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Linux
- 8:02 AM Ticket #8610 (Surface calculation: cannot convert float NaN to integer) created by
- […]
- 6:14 AM Ticket #8609 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 4:43 AM Ticket #8608 (Crash creating QWebEngineProfile at startup) created by
- […]
- 1:52 AM Ticket #8607 (SEQCROW sticks preset sets key_light_color to 4 values instead of 3) created by
- […]
- 12:41 AM Ticket #8606 (No sequences in file) created by
- […]
Mar 6, 2023:
- 11:44 PM Ticket #8605 (Various surface errors) created by
- […]
- 11:41 PM Ticket #8604 (Crash showing Rapid Access at startup) created by
- […]
- 1:39 PM Ticket #8602 (Crash creating QWebEngineProfile at startup) closed by
- can't reproduce: We've seen 39 crashes reported in create_chimerax_profile() crashing …
- 1:26 PM Ticket #8598 (Crash in calculate_surface_geometry) closed by
- can't reproduce: Crashed in sharp edge code during a molecular surface recalculation. …
- 1:23 PM Ticket #8597 (Opening JSON: KeyError: 'Channels') closed by
- duplicate: Fixed several months ago by warning about wrong file type. Trying to …
- 1:19 PM Ticket #8596 ("label listfonts": QFontDatabase(QFontDatabase): not enough arguments) closed by
- fixed: Fixed in tomorrow's daily build. The Qt window toolkit call to list …
- 11:28 AM Ticket #8603 (Crash creating QWebEngineProfile at startup) closed by
- duplicate
- 11:22 AM Ticket #8601 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 11:21 AM Ticket #8600 (Crash closing window while XMAS in use) closed by
- duplicate: Duplicate of #8575
- 10:57 AM Ticket #8599 (Crash in calculate_surface_geometry) closed by
- duplicate
- 10:36 AM Ticket #8595 (Crash in copy_from_framebuffer) closed by
- can't reproduce: 1.2.5
- 10:34 AM Ticket #8594 (Crash in event loop) closed by
- can't reproduce
- 1:02 AM Ticket #8603 (Crash creating QWebEngineProfile at startup) created by
- […]
- 12:58 AM Ticket #8602 (Crash creating QWebEngineProfile at startup) created by
- […]
Mar 5, 2023:
- 8:13 PM Ticket #8601 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 12:12 PM Ticket #8600 (Crash closing window while XMAS in use) created by
- […]
- 8:25 AM Ticket #8599 (Crash in calculate_surface_geometry) created by
- […]
- 8:25 AM Ticket #8598 (Crash in calculate_surface_geometry) created by
- […]
- 6:45 AM Ticket #8597 (Opening JSON: KeyError: 'Channels') created by
- […]
- 12:43 AM Ticket #8596 ("label listfonts": QFontDatabase(QFontDatabase): not enough arguments) created by
- […]
Mar 4, 2023:
Mar 3, 2023:
Mar 2, 2023:
- 5:03 PM Ticket #8590 (Graphics crash, macOS 11.6, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics crash.
- 4:59 PM Ticket #8592 (Graphics crash, macOS 13.1, Intel Iris Plus Graphics 645, dual display) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 4:40 PM Ticket #8587 (Crash saving image) closed by
- nonchimerax: I've seen this crash saving an image with ChimeraX 1.3 on CentOS 7. …
- 3:22 PM Ticket #8518 (Implement a NRRD file reader) closed by
- fixed: There is now …
- 2:02 PM Ticket #8593 (Cannot install bundles) created by
- Just to let you know, in case this ends up being useful info for you, …
- 1:54 PM NIAID2022 edited by
- (diff)
- 1:34 PM NIAID2022 edited by
- (diff)
- 12:51 PM Ticket #8530 (Crash clearing aniso_u6) closed by
- fixed: Fix will be in tomorrow's daily build.
- 12:49 PM Ticket #8457 (Crash clearing aniso_u6) closed by
- fixed: The ctypes call of clear_atom_aniso_u6 wasn't specifying the type of …
- 10:23 AM Ticket #8589 (Unknown crash after selection) closed by
- can't reproduce
- 10:19 AM Ticket #8588 (Crash clearing aniso_u6) closed by
- duplicate
- 9:37 AM Ticket #8592 (Graphics crash, macOS 13.1, Intel Iris Plus Graphics 645, dual display) created by
- […]
- 9:34 AM Ticket #8591 (Crash in garbage collection from timer after structure closed) created by
- […]
- 3:10 AM Ticket #8590 (Graphics crash, macOS 11.6, Intel Iris Plus Graphics) created by
- […]
- 2:06 AM Ticket #8589 (Unknown crash after selection) created by
- […]
Mar 1, 2023:
- 4:32 PM Ticket #8588 (Crash clearing aniso_u6) created by
- […]
- 1:35 PM Ticket #8587 (Crash saving image) created by
- […]
- 11:19 AM Ticket #8586 ("view matrix" given degenerate matrix) created by
- […]
- 10:28 AM Ticket #8585 (Graphics crash, macOS 11.7, Intel Iris) created by
- […]
- 9:30 AM Ticket #8584 (sym: Tried to get the position of deleted drawing) closed by
- duplicate
- 9:20 AM Ticket #8582 (Crash during text input) closed by
- can't reproduce
- 9:18 AM Ticket #8581 (Crash in QMainWindow::removeDockWidget) closed by
- can't reproduce
- 7:38 AM Ticket #8584 (sym: Tried to get the position of deleted drawing) created by
- […]
- 7:38 AM Ticket #8583 (sym: Tried to get the position of deleted drawing) created by
- […]
Feb 28, 2023:
- 9:55 PM Ticket #8580 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- nonchimerax: ChimeraX did not start because the Qt window toolkit could not …
- 9:46 PM Ticket #8577 (glDrawBuffer: invalid operation) closed by
- can't reproduce: Probably a graphics driver bug. RTX 3090 with Nvidia driver 520.61.05 …
- 8:36 PM Ticket #8582 (Crash during text input) created by
- […]
- 8:24 PM Ticket #8581 (Crash in QMainWindow::removeDockWidget) created by
- […]
- 5:42 PM Ticket #8580 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- The following bug report has been submitted: Platform: …
- 5:41 PM Ticket #8579 (Crash clearing aniso_u6) closed by
- duplicate: Duplicate of #8457
- 5:40 PM Ticket #8579 (Crash clearing aniso_u6) created by
- The following bug report has been submitted: Platform: …
- 5:34 PM Ticket #8578 (Haphazard tool tips) created by
- The following bug report has been submitted: Platform: …
- 5:32 PM Ticket #8577 (glDrawBuffer: invalid operation) created by
- The following bug report has been submitted: Platform: …
- 5:31 PM Ticket #8576 (ChargeError produces traceback) closed by
- fixed
- 5:30 PM Ticket #8576 (ChargeError produces traceback) created by
- The following bug report has been submitted: Platform: …
- 5:07 PM Ticket #8574 (Graphics crash, macOS 12.5.1, Intel HD Graphics 6000) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 5:04 PM Ticket #8575 (Crash closing window while XMAS in use) created by
- The following bug report has been submitted: Platform: …
- 4:55 PM Ticket #8574 (Graphics crash, macOS 12.5.1, Intel HD Graphics 6000) created by
- The following bug report has been submitted: Platform: …
- 4:53 PM Ticket #8573 (Additional EMDB entry info) created by
- The following bug report has been submitted: Platform: …
- 4:39 PM Ticket #8572 (test) closed by
- not a bug
- 4:39 PM Ticket #8571 (test) closed by
- not a bug
- 4:12 PM 2023-3-2 created by
- 4:10 PM DeveloperMeetings edited by
- (diff)
- 4:04 PM Ticket #8569 (Unknown crash) closed by
- can't reproduce
- 2:49 PM Ticket #8572 (test) created by
- […]
- 2:45 PM Ticket #8571 (test) created by
- […]
- 9:49 AM ChangeLog edited by
- (diff)
- 9:40 AM ChangeLog edited by
- (diff)
- 9:35 AM ChangeLog edited by
- (diff)
Feb 27, 2023:
- 8:25 PM Ticket #8566 (AlphaFold/Blast: Needleman-Wunsch being passed structure, not sequence) closed by
- fixed: Fixed in tomorrow's daily build (Feb 28, 2023). Using the AlphaFold …
- 7:50 PM Ticket #8563 (Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash. Two displays.
- 6:58 PM Ticket #8565 (Crash in event loop after showing many pseudobonds) closed by
- can't reproduce
- 6:43 PM Ticket #8554 (MatchMaker: wrapped C/C++ object of type QPushButton has been deleted) closed by
- fixed: sys.last_traceback was holding the reference! Fix: …
- 1:12 AM Ticket #8570 (Must run from installer) created by
- […]
Feb 26, 2023:
Feb 25, 2023:
- 2:39 PM Ticket #8568 ('overloadable' attribute missing) created by
- […]
- 1:08 PM Ticket #8567 (Clipper missing) created by
- […]
- 5:10 AM Ticket #8566 (AlphaFold/Blast: Needleman-Wunsch being passed structure, not sequence) created by
- […]
Feb 24, 2023:
- 11:19 PM Ticket #8565 (Crash in event loop after showing many pseudobonds) created by
- […]
- 9:11 PM Ticket #8564 (installation issue) created by
- […]
- 5:30 PM Ticket #8563 (Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics) created by
- […]
- 12:01 PM Ticket #8557 (Reading AlphaFold JSON as MOLE; shader syntax error) closed by
- duplicate: The graphics error is a driver problem. The error opening AlphaFold …
- 11:57 AM Ticket #8556 (Crash in molarray.LookupTable._delete_table) closed by
- can't reproduce: ChimeraX crashed trying to release some memory. This was probably …
- 11:55 AM Ticket #8562 (QQuickWidget: Failed to make context current when creating FBO) created by
- […]
- 11:35 AM Ticket #8553 (AddH problem) closed by
- duplicate: Hi Shana, This is the same issue, you either need to delete the …
- 11:29 AM Ticket #8552 (AddH problem) closed by
- fixed: Hi Shana, You're not running addh, you are running addcharge. Do you …
- 11:28 AM Ticket #8555 (glClear: invalid operation) closed by
- nonchimerax: This error at ChimeraX startup indicates that your graphics driver is …
- 11:00 AM Ticket #8539 (Download DICOM tool: need to segregate by collection when drilling ...) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/b73def018082fb884b61013a2c9443 …
- 10:25 AM Ticket #8561 (Session restore: invalid load key) closed by
- duplicate
- 10:22 AM Ticket #8560 (QWindowsWindow:setDarkBorderToWindow: Unable to set dark window border) closed by
- duplicate: Duplicate of #8541; adding Tristan to recipient list for that ticket
- 10:21 AM Ticket #8437 (QWindowsWindow::setDarkBorderToWindow: Unable to set dark window border) closed by
- duplicate: Duplicate of #8541
- 9:59 AM Ticket #8558 (Crash showing Rapid Access at startup(?)) closed by
- can't reproduce: Linux; the Python traceback implies the crash happened at startup …
- 8:24 AM Ticket #8561 (Session restore: invalid load key) created by
- […]
- 6:36 AM Ticket #8560 (QWindowsWindow:setDarkBorderToWindow: Unable to set dark window border) created by
- […]
- 6:23 AM Ticket #8559 (Difficult morphing scenario) created by
- […] 8em7_8em4_rebuilt.zip
- 5:56 AM Ticket #8558 (Crash showing Rapid Access at startup(?)) created by
- […]
- 3:57 AM Ticket #8557 (Reading AlphaFold JSON as MOLE; shader syntax error) created by
- […]
- 3:52 AM Ticket #8556 (Crash in molarray.LookupTable._delete_table) created by
- […]
Feb 23, 2023:
- 11:04 PM Ticket #8555 (glClear: invalid operation) created by
- […]
- 10:32 PM Ticket #8554 (MatchMaker: wrapped C/C++ object of type QPushButton has been deleted) created by
- […]
- 6:44 PM Ticket #8547 (Window black) closed by
- nonchimerax: ChimeraX and the Qt window toolkit it uses cannot display correctly …
- 3:34 PM Ticket #8503 (DICOM: minor text change request on DICOM Browser and Download DICOM tools) closed by
- fixed: OK, …
- 11:37 AM Ticket #8553 (AddH problem) created by
- […] Keppra21MBO-webina_out.pdbqt
- 11:33 AM Ticket #8552 (AddH problem) created by
- […] 1EVE-Docking-webina_out.pdbqt
- 10:57 AM Ticket #8536 (Atomic/session memory leak) closed by
- fixed: Was under the misapprehension that appending to a list works the same …
- 9:05 AM Ticket #8548 (ISOLDE: Unparameterised residue detected) closed by
- duplicate: Ancient - ChimeraX 1.0.
- 8:58 AM Ticket #8550 (Unknown crash at startup) closed by
- can't reproduce
- 8:40 AM Ticket #8546 (Crash in event loop) closed by
- can't reproduce
- 8:37 AM Ticket #8545 (Restore new session in old ChimeraX) closed by
- limitation
- 8:30 AM Ticket #8543 (Crash destroying QGridLayout) closed by
- can't reproduce: XMAS was installed
- 7:40 AM Ticket #8551 (Volume Viewer does not update for 'rename') created by
- […]
- 4:55 AM Ticket #8550 (Unknown crash at startup) created by
- […]
- 2:27 AM Ticket #8549 (Various surface errors) created by
- […]
Feb 22, 2023:
- 6:55 PM Ticket #8548 (ISOLDE: Unparameterised residue detected) created by
- […]
- 6:36 PM Ticket #8547 (Window black) created by
- […]
- 4:39 PM Ticket #8534 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- nonchimerax: Aha! Thanks for that info. Displaying 3D graphics (OpenGL) using a …
- 3:06 PM Ticket #8546 (Crash in event loop) created by
- […]
- 2:12 PM Ticket #8545 (Restore new session in old ChimeraX) created by
- […]
- 12:24 PM Ticket #8544 (ISOLDE: after session restore 'mgr' is None) created by
- […]
- 10:51 AM Ticket #8543 (Crash destroying QGridLayout) created by
- […]
- 10:32 AM Ticket #8542 (Add molmap option to specify grid size) created by
- Would be convenient of the molmap command could specify a grid size …
- 9:31 AM Ticket #8538 (Add Charges: Could not come up with unique atom name in mega-residue) closed by
- duplicate
Feb 21, 2023:
- 9:13 PM Ticket #8540 (Remove CONFINCLUDEDIR, CONFINCLUDEPY, INCLUDEPY, INCLUDEDIR, etc from ...) closed by
- fixed: I bumped setuptools after clearing those values from _sysconfigdata.
- 7:01 PM Ticket #8541 (QWindowsWindow::setDarkBorderToWindow: Unable to set dark window border) created by
- […]
- 5:19 PM Ticket #8540 (Remove CONFINCLUDEDIR, CONFINCLUDEPY, INCLUDEPY, INCLUDEDIR, etc from ...) created by
- We pinned setuptools to version 65.1.1 to avoid a change in distutils …
- 5:01 PM Ticket #8389 (Implement a NifTI File Reader) closed by
- fixed: Enabled the NifTI reader for tomorrow's (02/22/23) daily build.
- 4:47 PM Ticket #8503 (DICOM: minor text change request on DICOM Browser and Download DICOM tools) reopened by
- Not quite done. Although both initial tool dialogs (DICOM Browser, …
- 4:12 PM Ticket #8539 (Download DICOM tool: need to segregate by collection when drilling ...) created by
- Need to segregate studies by collection (if drilling down from >1 …
- 2:53 PM Ticket #8538 (Add Charges: Could not come up with unique atom name in mega-residue) created by
- […]
- 2:33 PM Ticket #8532 (Region past end of alignment) closed by
- fixed: Ensure that created regions (e.g. SCF coloring) don't extend past ends …
- 12:25 PM Ticket #8523 (Cruft in API reference) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/248109bd8f8231c946020d0b0c85f0 …
- 10:52 AM Ticket #8535 (Crash creating HTML profile) closed by
- duplicate
- 10:34 AM Ticket #8527 (Error in glGetFramebufferAttachmentParameteriv) closed by
- nonchimerax: Broken OpenGL graphics driver. Also using Windows 7 which ChimeraX …
- 10:30 AM Ticket #8520 (View matrix issue) closed by
- not a bug: Glad we figured it out. I made a request to add a camera command …
- 10:29 AM Ticket #8537 (Add a camera command option to set ortho camera field width) created by
- In ticket #8520 the problem was that the view matrix command does not …
- 10:26 AM Ticket #8524 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- nonchimerax: There are a variety of Qt bug reports about this "failed to initialize …
- 10:11 AM Ticket #8533 (Issue opening pdb files from ZDOCK) closed by
- duplicate: Hi Shawn, The ZDOCK "PDB" file does not conform to the PDB standard …
- 9:12 AM Ticket #8529 (Crash in glGetFramebufferAttachmentParameteriv) closed by
- duplicate
- 9:11 AM Ticket #8528 (Crash in glGetFramebufferAttachmentParameteriv) closed by
- duplicate
- 9:06 AM Ticket #8526 (Crash clearing aniso_u6) closed by
- duplicate: ARM, and running directly from .dmg (though we know the latter isn't …
- 8:06 AM Ticket #8536 (Atomic/session memory leak) created by
- […]
- 4:44 AM Ticket #8535 (Crash creating HTML profile) created by
- […]
- 1:13 AM Ticket #8534 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
Feb 20, 2023:
- 2:58 PM Ticket #8533 (Issue opening pdb files from ZDOCK) created by
- […] [[Image(...)]] complex.1.pdb
- 6:43 AM Ticket #8532 (Region past end of alignment) created by
- […]
- 6:40 AM Ticket #8531 (Crash asking for registration after opening old session) created by
- […]
- 4:14 AM Ticket #8530 (Crash clearing aniso_u6) created by
- […]
Feb 19, 2023:
- 10:03 PM Ticket #8529 (Crash in glGetFramebufferAttachmentParameteriv) created by
- […]
- 9:49 PM Ticket #8528 (Crash in glGetFramebufferAttachmentParameteriv) created by
- […]
- 9:21 PM Ticket #8527 (Error in glGetFramebufferAttachmentParameteriv) created by
- […]
Feb 18, 2023:
- 5:06 PM Ticket #8526 (Crash clearing aniso_u6) created by
- […]
- 3:20 AM Ticket #8525 (Session restore: Compressed file ended before the end-of-stream marker ...) created by
- […]
Feb 17, 2023:
- 7:59 PM Ticket #8524 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 5:30 PM Ticket #8523 (Cruft in API reference) created by
- The listings in the Programmer's Guide / API Reference / Python …
- 11:24 AM Dev2022-2-20 edited by
- (diff)
- 11:04 AM Ticket #8519 (Crash coloring ribbon) closed by
- can't reproduce: I have never seen a report of ChimeraX crashing on ribbon coloring. …
- 10:41 AM Ticket #8521 (PermissionError saving command history) closed by
- duplicate: Various fixes have been applied since then.
- 10:15 AM Ticket #8522 (Crash opening mmCIF on Linux) created by
- […] I53-50_marshmallow_half_shell_trimer_centered.cif
- 9:55 AM Ticket #8521 (PermissionError saving command history) created by
- […]
- 8:01 AM Ticket #8520 (View matrix issue) created by
- […]
- 1:26 AM Ticket #8519 (Crash coloring ribbon) created by
- […]
Feb 16, 2023:
- 5:48 PM Ticket #7904 (RCSB biological unit: PDBx/mmCIF styling lost) closed by
- fixed: Done for #8484.
- 5:47 PM Ticket #8484 ("styling lost" in hand-edited mmCIF) closed by
- fixed: Added fallback path to read the mmCIF file without PDBx/mmCIF styling …
- 4:32 PM Ticket #4479 (Read small-molecule CIF files) closed by
- fixed: Any further work on small molecule CIF files should be on a new ticket.
- 4:26 PM Ticket #8506 (Saving GLTF of mesh surface actually saves a filled surface) closed by
- fixed: Done. GLTF save and load now handle mesh and dot surfaces.
- 4:17 PM Ticket #4342 (mmCIF format-compliance issues) closed by
- fixed: The molecular data in the session file was unexpected by the mmCIF …
- 3:50 PM Ticket #8518 (Implement a NRRD file reader) created by
- Part of the NIAID contract
- 3:49 PM Ticket #8517 (Some TCIA dicoms open at an angle that makes them look invisible) created by
- Sometimes when a DICOM file is downloaded from TCIA and opened, …
- 3:09 PM Ticket #8511 (Make GLTF save volume image rendering) closed by
- fixed: Done. It can be pretty slow to save a GLTF with a volume image I …
- 1:54 PM 2023-2-16 edited by
- (diff)
- 1:21 PM 2023-2-16 edited by
- (diff)
- 1:21 PM 2023-2-16 edited by
- (diff)
- 12:26 PM Ticket #8515 (Map fit: Tried to get the position of deleted drawing) closed by
- fixed: Fixed. Added error message saying deleted fit structures cannot be saved.
- 12:12 PM Ticket #8516 (glClear: invalid framebuffer operation) closed by
- nonchimerax: Probably related to removing a second display […]
- 10:29 AM Ticket #8514 (Map not visible when Side View showing) closed by
- can't reproduce: This works fine for me using ChimeraX 1.5 on an Intel Mac with macOS …
- 9:59 AM Ticket #8513 (self.structure is None) closed by
- duplicate: From 0.91!
- 6:54 AM Ticket #8516 (glClear: invalid framebuffer operation) created by
- […]
- 5:03 AM Ticket #8515 (Map fit: Tried to get the position of deleted drawing) created by
- […]
- 4:13 AM Ticket #8514 (Map not visible when Side View showing) created by
- […]
Feb 15, 2023:
- 11:15 PM Ticket #8513 (self.structure is None) created by
- […]
- 8:02 PM Ticket #8512 (Crash in msgpack_deserialize) created by
- […]
- 1:51 PM Ticket #8510 (Crash reading 6V9V) closed by
- can't reproduce: This might be a hardware bug. See …
- 1:23 PM Ticket #8511 (Make GLTF save volume image rendering) created by
- Would like the GLTF writer to save volume image rendering as a stack …
- 1:13 PM Ticket #8507 (Saving a GLTF file of a transparent surface shows as opaque in BabylonJS) closed by
- fixed: Fixed. Made gltf writer set material alphaMode to blend if drawing is …
- 12:50 PM Ticket #8510 (Crash reading 6V9V) created by
- […]
- 12:41 PM Ticket #8509 (Write GLTF files directly to Quest 2 headset) created by
- I'd like to have ChimeraX able to write GLTF files directly to a Quest …
- 12:24 PM Ticket #8503 (DICOM: minor text change request on DICOM Browser and Download DICOM tools) closed by
- fixed: OK, I got …
- 10:58 AM Ticket #8508 (Crash in removeDockWidget) created by
- […]
- 10:40 AM Ticket #8507 (Saving a GLTF file of a transparent surface shows as opaque in BabylonJS) created by
- […]
- 10:31 AM Ticket #8506 (Saving GLTF of mesh surface actually saves a filled surface) created by
- […]
- 9:34 AM Ticket #8505 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:33 AM Ticket #8504 (Crash in event loop) closed by
- can't reproduce
- 8:05 AM Ticket #8505 (Crash using File→Open on Windows and/or in return statement) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
