Opened 3 years ago

Closed 3 years ago

#8665 closed defect (can't reproduce)

Error parsing DX file: map_data.readarray: could not convert string to float: b'llows'

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Volume Data Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open E:/Research/Cu24/structureanalysis/CuBImPzCHO.mol

> open E:/Research/Cu24/structureanalysis/Cu24BImPzCHO/Cu24BImPzCHO.dx

Opened Cu24BImPzCHO.dx as #2, grid size 49,49,49, pixel 0.7, shown at level
-6,6, step 1, values float32  

> volume #2 level 0.14 level 6

> volume #2 level 0.14 level 3.038

> volume #2 level 2.133 level 3.038

> hide #2.1 models

> volume #2 level 2.133 level 2.995

> open E:/Research/Cu24/structureanalysis/Cu24BImPzCHO/Cu24BImPzCHO.dx
> E:/Research/Cu24/structureanalysis/Cu24BImPzCHO/Cu24BImPzCHO_cav1.dx

Opened Cu24BImPzCHO.dx as #3.1, grid size 49,49,49, pixel 0.7, shown at level
-6,6, step 1, values float32  
Opened Cu24BImPzCHO_cav1.dx as #3.2, grid size 59,58,42, pixel 0.3, shown at
level -6,6, step 1, values float32  

> close #2

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in read_float_lines  
values = [float(x) for x in fields]  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in <listcomp>  
values = [float(x) for x in fields]  
ValueError: could not convert string to float: b'llows'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2153, in mousePressEvent  
cb(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\histogram.py", line 366, in select_marker_cb  
cb(self.markers[i])  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2222, in selected_marker_cb  
self.select_data_cb()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2216, in select_data_cb  
d.redisplay_needed_cb()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 294, in redisplay_needed_cb  
self.redisplay_needed()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 320, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 362, in
show_using_dialog_settings  
dr.show()  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 751, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1746, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1231, in matrix  
m = self.region_matrix(r, read_matrix)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1255, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\griddata.py", line 306, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 121, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in read_float_lines  
values = [float(x) for x in fields]  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in <listcomp>  
values = [float(x) for x in fields]  
ValueError: could not convert string to float: b'llows'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2155, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2159, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2230, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2216, in select_data_cb  
d.redisplay_needed_cb()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 294, in redisplay_needed_cb  
self.redisplay_needed()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 320, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 362, in
show_using_dialog_settings  
dr.show()  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 751, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1746, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1231, in matrix  
m = self.region_matrix(r, read_matrix)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1255, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\griddata.py", line 306, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 121, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in read_float_lines  
values = [float(x) for x in fields]  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in <listcomp>  
values = [float(x) for x in fields]  
ValueError: could not convert string to float: b'llows'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2155, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2159, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2230, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2216, in select_data_cb  
d.redisplay_needed_cb()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 294, in redisplay_needed_cb  
self.redisplay_needed()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 320, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 362, in
show_using_dialog_settings  
dr.show()  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 751, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1746, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1231, in matrix  
m = self.region_matrix(r, read_matrix)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1255, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\griddata.py", line 306, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 121, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in read_float_lines  
values = [float(x) for x in fields]  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in <listcomp>  
values = [float(x) for x in fields]  
ValueError: could not convert string to float: b'llows'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2155, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2159, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2230, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2216, in select_data_cb  
d.redisplay_needed_cb()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 294, in redisplay_needed_cb  
self.redisplay_needed()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 320, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 362, in
show_using_dialog_settings  
dr.show()  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 751, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1746, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1231, in matrix  
m = self.region_matrix(r, read_matrix)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1255, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\griddata.py", line 306, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 121, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in read_float_lines  
values = [float(x) for x in fields]  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in <listcomp>  
values = [float(x) for x in fields]  
ValueError: could not convert string to float: b'llows'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2155, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2159, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2230, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2216, in select_data_cb  
d.redisplay_needed_cb()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 294, in redisplay_needed_cb  
self.redisplay_needed()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 320, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 362, in
show_using_dialog_settings  
dr.show()  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 751, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1746, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1231, in matrix  
m = self.region_matrix(r, read_matrix)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1255, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\griddata.py", line 306, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 121, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in read_float_lines  
values = [float(x) for x in fields]  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in <listcomp>  
values = [float(x) for x in fields]  
ValueError: could not convert string to float: b'llows'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2155, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2159, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2230, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2216, in select_data_cb  
d.redisplay_needed_cb()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 294, in redisplay_needed_cb  
self.redisplay_needed()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 320, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 362, in
show_using_dialog_settings  
dr.show()  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 751, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1746, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1231, in matrix  
m = self.region_matrix(r, read_matrix)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1255, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\griddata.py", line 306, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 121, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in read_float_lines  
values = [float(x) for x in fields]  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in <listcomp>  
values = [float(x) for x in fields]  
ValueError: could not convert string to float: b'llows'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2155, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2159, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2230, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2216, in select_data_cb  
d.redisplay_needed_cb()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 294, in redisplay_needed_cb  
self.redisplay_needed()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 320, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 362, in
show_using_dialog_settings  
dr.show()  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 751, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1746, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1231, in matrix  
m = self.region_matrix(r, read_matrix)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1255, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\griddata.py", line 306, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 121, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in read_float_lines  
values = [float(x) for x in fields]  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in <listcomp>  
values = [float(x) for x in fields]  
ValueError: could not convert string to float: b'llows'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2155, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2159, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2230, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2216, in select_data_cb  
d.redisplay_needed_cb()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 294, in redisplay_needed_cb  
self.redisplay_needed()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 320, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 362, in
show_using_dialog_settings  
dr.show()  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 751, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1746, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1231, in matrix  
m = self.region_matrix(r, read_matrix)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1255, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\griddata.py", line 306, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 121, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in read_float_lines  
values = [float(x) for x in fields]  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in <listcomp>  
values = [float(x) for x in fields]  
ValueError: could not convert string to float: b'llows'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2155, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2159, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2230, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2216, in select_data_cb  
d.redisplay_needed_cb()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 294, in redisplay_needed_cb  
self.redisplay_needed()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 320, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 362, in
show_using_dialog_settings  
dr.show()  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 751, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1746, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1231, in matrix  
m = self.region_matrix(r, read_matrix)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1255, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\griddata.py", line 306, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 121, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in read_float_lines  
values = [float(x) for x in fields]  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in <listcomp>  
values = [float(x) for x in fields]  
ValueError: could not convert string to float: b'llows'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2155, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2159, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2230, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2216, in select_data_cb  
d.redisplay_needed_cb()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 294, in redisplay_needed_cb  
self.redisplay_needed()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 320, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 362, in
show_using_dialog_settings  
dr.show()  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 751, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1746, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1231, in matrix  
m = self.region_matrix(r, read_matrix)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1255, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\griddata.py", line 306, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 121, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  

> volume #3.1 level 0.237 level 6

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in read_float_lines  
values = [float(x) for x in fields]  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 159, in <listcomp>  
values = [float(x) for x in fields]  
ValueError: could not convert string to float: b'llows'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2162, in mouseReleaseEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2159, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2230, in moved_marker_cb  
self.select_data_cb() # Causes redisplay using GUI settings  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 2216, in select_data_cb  
d.redisplay_needed_cb()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 294, in redisplay_needed_cb  
self.redisplay_needed()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 320, in redisplay_needed  
self.show_using_dialog_settings(self.active_volume)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 362, in
show_using_dialog_settings  
dr.show()  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 751, in show  
self._keep_displayed_data = self.displayed_matrices() if show else None  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1746, in displayed_matrices  
matrices.append(self.matrix(read_matrix))  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1231, in matrix  
m = self.region_matrix(r, read_matrix)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 1255, in region_matrix  
m = d.matrix(origin, size, step, progress, from_cache_only)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\griddata.py", line 306, in matrix  
m = self.read_matrix(ijk_origin, ijk_size, ijk_step, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_grid.py", line 39, in read_matrix  
matrix = self.apbs_data.matrix(progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\apbs\apbs_format.py", line 124, in matrix  
data = read_text_floats(self.path, self.data_offset, self.grid_size,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 121, in read_text_floats  
read_float_lines(f, array, line_format, progress)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
SyntaxError: Bad number format in
E:\Research\Cu24\structureanalysis\Cu24BImPzCHO\Cu24BImPzCHO.dx, line  
b'llows\r\n'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_data\readarray.py", line 162, in read_float_lines  
raise SyntaxError(msg)  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 516.40
OpenGL renderer: NVIDIA RTX A4000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: zh_CN.cp936
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: windows

Manufacturer: ASUS
Model: System Product Name
OS: Microsoft Windows 10 专业版 (Build 19045)
Memory: 68,489,084,928
MaxProcessMemory: 137,438,953,344
CPU: 24 12th Gen Intel(R) Core(TM) i9-12900KF
OSLanguage: zh-CN

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2022.9.24
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    comtypes: 1.1.10
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.4
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.1.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.1.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.33
    psutil: 5.9.1
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.6
    pywin32: 303
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.3.0
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    setuptools: 65.1.1
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    urllib3: 1.26.13
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    WMI: 1.5.1
    zipp: 3.11.0

Change History (2)

comment:1 by Eric Pettersen, 3 years ago

Component: Unassigned → Volume Data
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → map_data.readarray: could not convert string to float: b'llows'

comment:2 by Tom Goddard, 3 years ago

Resolution: → can't reproduce
Status: assigned → closed
Summary: map_data.readarray: could not convert string to float: b'llows' → Error parsing DX file: map_data.readarray: could not convert string to float: b'llows'

Error parsing a DX map file. Could be some file header option ChimeraX does not recognize or could be a bad file, would need the file to know.

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