Unknown crash after selection

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
{"app_name":"ChimeraX","timestamp":"2023-03-02 00:05:24.00 +0100","app_version":"","slice_uuid":"9596eff5-d2be-396c-9c4e-6177235c3dae","build_version":"","platform":1,"share_with_app_devs":0,"is_first_party":1,"bug_type":"309","os_version":"macOS 13.2.1 (22D68)","roots_installed":0,"incident_id":"81165AFA-ECB1-42AA-B3D1-E1B38BF40C36","name":"ChimeraX"}
{
  "uptime" : 110000,
  "procRole" : "Unspecified",
  "version" : 2,
  "userID" : 502,
  "deployVersion" : 210,
  "modelCode" : "MacBookPro15,2",
  "coalitionID" : 10155,
  "osVersion" : {
    "train" : "macOS 13.2.1",
    "build" : "22D68",
    "releaseType" : "User"
  },
  "captureTime" : "2023-03-02 00:05:24.0451 +0100",
  "incident" : "81165AFA-ECB1-42AA-B3D1-E1B38BF40C36",
  "pid" : 11462,
  "cpuType" : "X86-64",
  "roots_installed" : 0,
  "bug_type" : "309",
  "procLaunch" : "2023-03-01 23:53:37.5432 +0100",
  "procStartAbsTime" : 109782902645216,
  "procExitAbsTime" : 110489331303009,
  "procName" : "ChimeraX",
  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "995DA1EC-B73E-5C0B-0279-D2B1034670D9",
  "responsiblePid" : 11441,
  "wakeTime" : 1939,
  "bridgeVersion" : {"build":"20P3045","train":"7.2"},
  "sleepWakeUUID" : "DC7955BD-9E17-44FC-BB05-9E9389D86DB3",
  "sip" : "enabled",
  "vmRegionInfo" : "0x106220160 is in 0x106050000-0x1062b5000;  bytes after start: 1900896  bytes before end: 609951\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      mapped file                 106032000-10603d000    [   44K] r--\/rwx SM=COW  ...t_id=42201787\n      GAP OF 0x13000 BYTES\n--->  mapped file                 106050000-1062b5000    [ 2452K] r-x\/rwx SM=COW  ...t_id=444f9387\n      mapped file                 1062b5000-1062ef000    [  232K] rw-\/rwx SM=COW  ...t_id=43c9f787",
  "exception" : {"codes":"0x000000000000000a, 0x0000000106220160","rawCodes":[10,4397859168],"type":"EXC_BAD_ACCESS","signal":"SIGILL","subtype":"KERN_MEMORY_ERROR at 0x0000000106220160"},
  "termination" : {"flags":0,"code":4,"namespace":"SIGNAL","indicator":"Illegal instruction: 4","byProc":"ChimeraX","byPid":11462},
  "ktriageinfo" : "VM - Object has no pager\nVM - Object has no pager\nVM - Object has no pager\nVM - Object has no pager\nVM - Object has no pager\n",
  "vmregioninfo" : "0x106220160 is in 0x106050000-0x1062b5000;  bytes after start: 1900896  bytes before end: 609951\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      mapped file                 106032000-10603d000    [   44K] r--\/rwx SM=COW  ...t_id=42201787\n      GAP OF 0x13000 BYTES\n--->  mapped file                 106050000-1062b5000    [ 2452K] r-x\/rwx SM=COW  ...t_id=444f9387\n      mapped file                 1062b5000-1062ef000    [  232K] rw-\/rwx SM=COW  ...t_id=43c9f787",
  "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
  "faultingThread" : 0,
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  "usedImages" : [
  {
    "size" : 0,
    "source" : "A",
    "base" : 0,
    "uuid" : "00000000-0000-0000-0000-000000000000"
  }
],
  "vmSummary" : "ReadOnly portion of Libraries: Total=182.4M resident=0K(0%) swapped_out_or_unallocated=182.4M(100%)\nWritable regions: Total=743.8M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=743.8M(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nKernel Alloc Once                    8K        1 \nMALLOC                           221.9M      111 \nMALLOC guard page                   16K        4 \nMALLOC_LARGE (reserved)            128K        1         reserved VM address space (unallocated)\nMALLOC_NANO (reserved)           384.0M        1         reserved VM address space (unallocated)\nSTACK GUARD                         12K        3 \nStack                             9752K        4 \nStack Guard                       56.0M        1 \nVM_ALLOCATE                       96.3M        8 \nVM_ALLOCATE (reserved)            32.0M        1         reserved VM address space (unallocated)\n__DATA                              11K        1 \n__DATA_CONST                        20K        1 \n__DATA_DIRTY                         7K        1 \n__LINKEDIT                       181.8M        1 \n__TEXT                             596K        1 \ndyld private memory                256K        1 \nmapped file                       81.6M      141 \nshared memory                       20K        3 \n===========                     =======  ======= \nTOTAL                              1.0G      285 \nTOTAL, minus reserved VM space   648.0M      285 \n",
  "legacyInfo" : {
  "threadTriggered" : {

  }
},
  "trialInfo" : {
  "rollouts" : [
    {
      "rolloutId" : "6112e3d2fc54bc3389840661",
      "factorPackIds" : {
        "SIRI_TEXT_TO_SPEECH" : "63e590a947bae55eb0b06441"
      },
      "deploymentId" : 240000333
    },
    {
      "rolloutId" : "63582c5f8a53461413999550",
      "factorPackIds" : {

      },
      "deploymentId" : 240000002
    }
  ],
  "experiments" : [

  ]
},
  "reportNotes" : [
  "dyld_process_snapshot_create_for_process failed with 5"
]
}
===== Log before crash start =====
Startup Errors  
---  
error | Bundle 'ChimeraX-ISOLDE' custom initialization failed  
warning | Traceback (most recent call last):  
File
"/private/var/folders/vv/hpmpr_655t5ch8t1fncstg_m0000gp/T/AppTranslocation/DE38C9D8-A3E5-4EF7-952E-06884CC21B2A/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 484, in get_module  
m = importlib.import_module(self.package_name)  
File
"/private/var/folders/vv/hpmpr_655t5ch8t1fncstg_m0000gp/T/AppTranslocation/DE38C9D8-A3E5-4EF7-952E-06884CC21B2A/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/importlib/__init__.py",
line 127, in import_module  
return _bootstrap._gcd_import(name[level:], package, level)  
File "", line 1030, in _gcd_import  
File "", line 1007, in _find_and_load  
File "", line 986, in _find_and_load_unlocked  
File "", line 680, in _load_unlocked  
File "", line 850, in exec_module  
File "", line 228, in _call_with_frames_removed  
File "/Users/andreaswisniewski/Library/Application Support/ChimeraX/1.3/site-
packages/chimerax/isolde/__init__.py", line 51, in   
__version__ = _version()  
File "/Users/andreaswisniewski/Library/Application Support/ChimeraX/1.3/site-
packages/chimerax/isolde/__init__.py", line 49, in _version  
return pkg_resources.require('ChimeraX-ISOLDE')[0].version  
File
"/private/var/folders/vv/hpmpr_655t5ch8t1fncstg_m0000gp/T/AppTranslocation/DE38C9D8-A3E5-4EF7-952E-06884CC21B2A/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/pkg_resources/__init__.py", line 886, in require  
needed = self.resolve(parse_requirements(requirements))  
File
"/private/var/folders/vv/hpmpr_655t5ch8t1fncstg_m0000gp/T/AppTranslocation/DE38C9D8-A3E5-4EF7-952E-06884CC21B2A/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/pkg_resources/__init__.py", line 772, in resolve  
raise DistributionNotFound(req, requirers)  
pkg_resources.DistributionNotFound: The 'ChimeraX-Clipper~=0.17.0'
distribution was not found and is required by ChimeraX-ISOLDE  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/private/var/folders/vv/hpmpr_655t5ch8t1fncstg_m0000gp/T/AppTranslocation/DE38C9D8-A3E5-4EF7-952E-06884CC21B2A/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 359, in initialize  
api = self._get_api(session.logger)  
File
"/private/var/folders/vv/hpmpr_655t5ch8t1fncstg_m0000gp/T/AppTranslocation/DE38C9D8-A3E5-4EF7-952E-06884CC21B2A/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 503, in _get_api  
m = self.get_module()  
File
"/private/var/folders/vv/hpmpr_655t5ch8t1fncstg_m0000gp/T/AppTranslocation/DE38C9D8-A3E5-4EF7-952E-06884CC21B2A/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 486, in get_module  
raise ToolshedError("Error importing bundle %s's module: %s" % (self.name,
str(e)))  
chimerax.core.toolshed.ToolshedError: Error importing bundle ChimeraX-ISOLDE's
module: The 'ChimeraX-Clipper~=0.17.0' distribution was not found and is
required by ChimeraX-ISOLDE  
  
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/andreaswisniewski/Desktop/ADAPT_IL17/IL17c/Structure_ChimeraX/ADAPT_IL17c_7.pdb
> format pdb

ADAPT_IL17c_7.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) Template Alignment: 1gjt.1
[more info...]  
  
Chain information for ADAPT_IL17c_7.pdb #1  
---  
Chain | Description  
A | No description available  
  

> coulombic

Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for ADAPT_IL17c_7.pdb_A SES surface #1.1: minimum, -16.86,
mean -4.14, maximum 7.11  
To also show corresponding color key, enter the above coulombic command and
add key true  

> show surfaces

> hide atoms

> hide cartoons

> hide surfaces

> show surfaces

> color byhetero

> color bychain

> hide surfaces

> show atoms

> show cartoons

> hide atoms

Alignment identifier is 1/A  

> select /A:5-23,27-34,39-52

330 atoms, 335 bonds, 41 residues, 1 model selected  

> interfaces select & ~solvent

Missing or invalid "atoms" argument: invalid atoms specifier  

> interfaces select & ~solvent

Missing or invalid "atoms" argument: invalid atoms specifier  

> color sel bynucleotide

> color sel bypolymer

> rainbow sel

> mlp sel

Map values for surface "ADAPT_IL17c_7.pdb_A SES surface": minimum -23.61, mean
-1.771, maximum 23.02  
To also show corresponding color key, enter the above mlp command and add key
true  

> mlp sel

Map values for surface "ADAPT_IL17c_7.pdb_A SES surface": minimum -23.61, mean
-1.771, maximum 23.02  
To also show corresponding color key, enter the above mlp command and add key
true  

> hide sel surfaces

> mlp sel

Map values for surface "ADAPT_IL17c_7.pdb_A SES surface": minimum -23.61, mean
-1.771, maximum 23.02  
To also show corresponding color key, enter the above mlp command and add key
true  

> hide sel cartoons

> hide sel surfaces

> hide sel cartoons

> hide sel atoms

> show sel cartoons

> hide sel atoms

> hide sel cartoons

> style sel stick

Changed 330 atom styles  

> style sel sphere

Changed 330 atom styles  

> style sel ball

Changed 330 atom styles  

> show sel cartoons

> coulombic sel

Coulombic values for ADAPT_IL17c_7.pdb_A SES surface #1.1: minimum, -16.86,
mean -4.14, maximum 7.11  
To also show corresponding color key, enter the above coulombic command and
add key true  

> hide sel surfaces

> coulombic sel

Coulombic values for ADAPT_IL17c_7.pdb_A SES surface #1.1: minimum, -16.86,
mean -4.14, maximum 7.11  
To also show corresponding color key, enter the above coulombic command and
add key true  

> ui tool show "Show Sequence Viewer"

> sequence chain /A

Destroying pre-existing alignment with identifier 1/A  
Alignment identifier is 1/A  


===== Log before crash end =====

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/andreaswisniewski/Desktop/ADAPT_IL17/IL17c/Structure_ChimeraX/ADAPT_IL17c_7.pdb
> format pdb

ADAPT_IL17c_7.pdb title:  
SWISS-MODEL SERVER (https://swissmodel.expasy.org) Template Alignment: 1gjt.1
[more info...]  
  
Chain information for ADAPT_IL17c_7.pdb #1  
---  
Chain | Description  
A | No description available  
  
Alignment identifier is 1/A  

> select /A:5-23,27-34,39-52

330 atoms, 335 bonds, 41 residues, 1 model selected  




OpenGL version: 4.1 INTEL-20.2.50
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655
OpenGL vendor: Intel Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro15,2
      Processor Name: Quad-Core Intel Core i5
      Processor Speed: 2,4 GHz
      Number of Processors: 1
      Total Number of Cores: 4
      L2 Cache (per Core): 256 KB
      L3 Cache: 6 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      System Firmware Version: 1916.80.2.0.0 (iBridge: 20.16.3045.0.0,0)
      OS Loader Version: 564.40.4~66

Software:

    System Software Overview:

      System Version: macOS 13.2.1 (22D68)
      Kernel Version: Darwin 22.3.0
      Time since boot: 2 days, 13 hours, 41 minutes

Graphics/Displays:

    Intel Iris Plus Graphics 655:

      Chipset Model: Intel Iris Plus Graphics 655
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x3ea5
      Revision ID: 0x0001
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Framebuffer Depth: 24-Bit Color (ARGB8888)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.4
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.1.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.1.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.33
    psutil: 5.9.1
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.6
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.3.0
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    setuptools: 65.1.1
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    typing-extensions: 4.4.0
    urllib3: 1.26.13
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    zipp: 3.11.0