Opened 3 years ago

Closed 3 years ago

#8623 closed defect (fixed)

Centroid table: float() argument must be a string or a number, not 'NoneType'

Reported by: chimerax-bug-report@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Structure Analysis Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Windows-10-10.0.19044
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "E:/VU/AI Master/P4 Structural Bioinformatics/assignments/2/good
> backups/PPI/new_sim/1vet-em.pdb"

Summary of feedback from opening E:/VU/AI Master/P4 Structural
Bioinformatics/assignments/2/good backups/PPI/new_sim/1vet-em.pdb  
---  
warning | Ignored bad PDB record found on line 2  
REMARK THIS IS A SIMULATION BOX  
  
1vet-em.pdb title:  
Protein [more info...]  
  
Chain information for 1vet-em.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> select /A

1196 atoms, 1213 bonds, 122 residues, 1 model selected  

> select /A

1196 atoms, 1213 bonds, 122 residues, 1 model selected  

> color

> color #ff0000

> undo

[Repeated 3 time(s)]

> select:A

Unknown command: select:A  

> select :A

Nothing selected  

> select :chain A

Expected a keyword  

> select /A:1-122

1196 atoms, 1213 bonds, 122 residues, 1 model selected  

> color #ff0000 sel

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> color #ff0000 :A

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> color #ff0000 :chainA

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> color #ff0000 :chain A

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> color #ff0000 chain A

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> color #ff0000 chain :A

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> color #ff0000 :/A; color #0000ff :/B

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> select /A

1196 atoms, 1213 bonds, 122 residues, 1 model selected  

> color sel orange

> select /B

1143 atoms, 1154 bonds, 118 residues, 1 model selected  

> color sel magenta

> color sel cornflower blue

> unselect

Unknown command: unselect  

> select none

Expected an objects specifier or a keyword  

> select clear

> define centroid :.A

Expected a keyword  

> define centroid /A

Centroid 'centroid' placed at [58.58379599 35.59636288 28.20024247]  

> define centroid /B

Centroid 'centroid' placed at [35.03490814 34.66207349 27.88753281]  

> color centroid /B red

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random'
or a keyword  

> select centroid /B

Expected an objects specifier or a keyword  

> select solvent

Nothing selected  

> distance c1 c2

Missing or invalid "objects" argument: invalid objects specifier  

> undo

[Repeated 2 time(s)]

> redo

[Repeated 2 time(s)]

> define centroid /A name c1

Centroid 'c1' placed at [58.58379599 35.59636288 28.20024247]  

> color #fcff57ff

> color #fcff59ff

> color #efff5dff

> color #efff5eff

> color #efff60ff

> color #efff61ff

> color #eaff61ff

> color #e3ff67ff

> color #dfff6bff

> color #dfff6cff

> color #ddff6cff

> color #d9ff70ff

> color #d7ff78ff

> color #d7ff7bff

> color #d7ff79ff

> color #d7ff78ff

> color #f0ff66ff

> color #f2ff65ff

> color #f7ff63ff

> color #f7ff62ff

> color #f7ff61ff

> color #f7ff60ff

> color #f2ff5eff

> color #efff5cff

> color #e9ff5cff

> color #e4ff5aff

> color #d7ff55ff

> color #d0ff4eff

> color #c8ff47ff

> color #c7ff45ff

> color #c3ff42ff

> color #c3ff41ff

> color #c3ff40ff

> color #c2ff3eff

> color #c2ff3dff

> color #c5ff3dff

> color #cbff3dff

> color #d2ff3dff

> color #d5ff3dff

> color #dfff3cff

> color #e5ff3cff

> color #ecff3cff

> color #ffff38ff

> color #fff838ff

> color #fff837ff

> color #fff235ff

> color #ffee35ff

> color #ffe734ff

> color #ffd633ff

> color #ffc130ff

> color #ffba30ff

> color #ffb22eff

> color #ffaf2eff

> color #ffa72cff

> color #ff9f2aff

> color #ff9c2aff

> color #ff952aff

> color #ff8929ff

> color #ff7d27ff

> color #ff7627ff

> color #ff7d27ff

> color #ff8127ff

> color #ff8827ff

> color #ff9429ff

> color #ffb12bff

> color #ffb22cff

> color #ffc32cff

> color #ffc42eff

> color #ffcb2eff

> color #ffd52fff

> color #ffdd31ff

> color #ffe033ff

> color #ffe134ff

> color #ffe135ff

> color #ffe837ff

> color #ffe838ff

> color #fcff3eff

> color #ffff40ff

> color #ffe240ff

> color #ffdf40ff

> color #ffd941ff

> color #ffd642ff

> color #ffd643ff

> color #ffcb46ff

> color #ffc847ff

> color #ffb949ff

> color #ffb349ff

> color #ffad49ff

> color #ffab4aff

> color #ffa54aff

> color #ff9e4aff

> color #ff9b4aff

> color #ff924aff

> color #ff8c4aff

> color #ff834aff

> undo

[Repeated 1 time(s)]

> color cornflower blue

> color #43e0ffff

> color #42e6ffff

> color #42d6ffff

> color #42d3ffff

> color #42cdffff

> color #41c3ffff

> color #41bdffff

> color #40acffff

> color #40a6ffff

> color #3ea2ffff

> color #3e95ffff

> color #3e8bffff

> color #3e88ffff

> color #3e7bffff

> color #3e78ffff

> color #3d6affff

> color #3c66ffff

> color #3a65ffff

> color #3762ffff

> color #3561ffff

> color #3358ffff

> color #2e4dffff

> color #2c4cffff

> color #2b4bffff

> color #2a4affff

> color #2949ffff

> color #2747ffff

> color #2546ffff

> color #2142ffff

> color #203effff

> color #1e34ffff

> color #1d34ffff

> define centroid /B name c2 color #1d34ff

Centroid 'c2' placed at [35.03490814 34.66207349 27.88753281]  

> define centroid /A name c1 color #ff834a

Centroid 'c1' placed at [58.58379599 35.59636288 28.20024247]  

> define centroid /A name c1 color #ff834a

Centroid 'c1' placed at [58.58379599 35.59636288 28.20024247]  

> define centroid /A name c1 color #ff834a

Centroid 'c1' placed at [58.58379599 35.59636288 28.20024247]  

> define centroid /A name c1 color #ff834a

Centroid 'c1' placed at [58.58379599 35.59636288 28.20024247]  

> define centroid /A name c1 color #ff834a

Centroid 'c1' placed at [58.58379599 35.59636288 28.20024247]  

> define centroid /A name c1 color #ff834a

Centroid 'c1' placed at [58.58379599 35.59636288 28.20024247]  

> define centroid /A name c1 color #ff834a

Centroid 'c1' placed at [58.58379599 35.59636288 28.20024247]  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 190, in _sort_func  
left_num = float(left_data)  
TypeError: float() argument must be a string or a number, not 'NoneType'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 206, in lessThan  
return self.sourceModel()._sort_func(left_index, right_index)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
AttributeError: 'QCxTableModel' object has no attribute 'sourceModel'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\item_table.py", line 194, in _sort_func  
table = self.sourceModel()._item_table  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 456.71
OpenGL renderer: GeForce GTX 660/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: nl_NL.cp1252
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: windows

Manufacturer:                                 
Model:                                 
OS: Microsoft Windows 10 Education (Build 19044)
Memory: 17,100,558,336
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-3820 CPU @ 3.60GHz
OSLanguage: en-US

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2022.9.24
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    comtypes: 1.1.10
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.4
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.1.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.1.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.33
    psutil: 5.9.1
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.6
    pywin32: 303
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.3.0
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    setuptools: 65.1.1
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    urllib3: 1.26.13
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    WMI: 1.5.1
    zipp: 3.11.0

Change History (2)

comment:1 by Eric Pettersen, 3 years ago

Component: Unassigned → Structure Analysis
Owner: set to Eric Pettersen
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → Centroid table: float() argument must be a string or a number, not 'NoneType'

comment:2 by Eric Pettersen, 3 years ago

Resolution: → fixed
Status: accepted → closed

Fix: ​https://github.com/RBVI/ChimeraX/commit/1457c90ae46f2b7a5da45427b6d6663210474022

Note: See TracTickets for help on using tickets.