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Opened 3 years ago
Closed 3 years ago
#8617 closed defect (duplicate)
Crash clearing aniso_u6
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Structure Editing | Version: | |
| Keywords: | Cc: | Tristan Croll | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: macOS-11.6-arm64-arm-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x000000033ecd3000 (most recent call first):
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 316 in wait
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 574 in wait
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 1297 in run
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x00000001025fbd40 (most recent call first):
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/molarray.py", line 846 in _set_aniso_u6
File "/Users/macentol_a/Library/Application Support/ChimeraX/1.5/site-packages/chimerax/clipper/sanity_check.py", line 12 in remove_invalid_anisou
File "/Users/macentol_a/Library/Application Support/ChimeraX/1.5/site-packages/chimerax/clipper/symmetry.py", line 667 in _anisou_sanity_check
File "/Users/macentol_a/Library/Application Support/ChimeraX/1.5/site-packages/chimerax/clipper/symmetry.py", line 636 in add_model
File "/Users/macentol_a/Library/Application Support/ChimeraX/1.5/site-packages/chimerax/clipper/symmetry.py", line 594 in __init__
File "/Users/macentol_a/Library/Application Support/ChimeraX/1.5/site-packages/chimerax/clipper/symmetry.py", line 170 in _get_symmetry_handler
File "/Users/macentol_a/Library/Application Support/ChimeraX/1.5/site-packages/chimerax/clipper/symmetry.py", line 159 in get_symmetry_handler
File "/Users/macentol_a/Library/Application Support/ChimeraX/1.5/site-packages/chimerax/isolde/isolde.py", line 814 in _change_selected_model
File "/Users/macentol_a/Library/Application Support/ChimeraX/1.5/site-packages/chimerax/isolde/isolde.py", line 771 in change_selected_model
File "/Users/macentol_a/Library/Application Support/ChimeraX/1.5/site-packages/chimerax/isolde/isolde.py", line 433 in selected_model
File "/Users/macentol_a/Library/Application Support/ChimeraX/1.5/site-packages/chimerax/isolde/ui/main_win.py", line 157 in _set_selected_model
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 283 in event_loop
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 884 in init
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1035 in
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [52112]
Path: /Applications/ChimeraX-1.5.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.5.0 (1.5.0.0)
Code Type: ARM-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [52112]
User ID: 30152
Date/Time: 2023-03-08 22:21:11.945 +0100
OS Version: macOS 11.6 (20G165)
Report Version: 12
Anonymous UUID: 58D7642C-091B-C1FC-A69D-A56E236A4C54
Sleep/Wake UUID: 738DB03F-890C-41E1-9EE1-9A75B49191DB
Time Awake Since Boot: 2200000 seconds
Time Since Wake: 5300 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000008
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x8:
-->
__TEXT 102504000-102508000 [ 16K] r-x/r-x SM=COW /Applications/ChimeraX-1.5.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x0000000192e98e68 __pthread_kill + 8
1 libsystem_pthread.dylib 0x0000000192ecb43c pthread_kill + 292
2 libsystem_c.dylib 0x0000000192daae10 raise + 32
3 libsystem_platform.dylib 0x0000000192f16c44 _sigtramp + 56
4 libmolc.dylib 0x0000000142b37054 clear_atom_aniso_u6 + 32
5 libmolc.dylib 0x0000000142b37054 clear_atom_aniso_u6 + 32
6 libffi.dylib 0x000000019fd90050 ffi_call_SYSV + 80
7 libffi.dylib 0x000000019fd989e4 ffi_call_int + 948
8 _ctypes.cpython-39-darwin.so 0x000000010717a944 _ctypes_callproc + 1404
9 _ctypes.cpython-39-darwin.so 0x0000000107173c10 PyCFuncPtr_call + 1168
10 org.python.python 0x000000010268c870 _PyObject_MakeTpCall + 360
11 org.python.python 0x0000000102762bc8 call_function + 512
12 org.python.python 0x0000000102760284 _PyEval_EvalFrameDefault + 23232
13 org.python.python 0x000000010268cffc function_code_fastcall + 112
14 org.python.python 0x000000010268df84 object_vacall + 256
15 org.python.python 0x000000010268e1ac PyObject_CallFunctionObjArgs + 48
16 org.python.python 0x00000001026962ec property_descr_set + 80
17 org.python.python 0x00000001026d3fa4 _PyObject_GenericSetAttrWithDict + 184
18 org.python.python 0x00000001026d3384 PyObject_SetAttr + 132
19 org.python.python 0x000000010275d650 _PyEval_EvalFrameDefault + 11916
20 org.python.python 0x000000010268cffc function_code_fastcall + 112
21 org.python.python 0x0000000102762b68 call_function + 416
22 org.python.python 0x0000000102760284 _PyEval_EvalFrameDefault + 23232
23 org.python.python 0x000000010268cffc function_code_fastcall + 112
24 org.python.python 0x0000000102762b68 call_function + 416
25 org.python.python 0x00000001027601e4 _PyEval_EvalFrameDefault + 23072
26 org.python.python 0x0000000102763a90 _PyEval_EvalCode + 2988
27 org.python.python 0x000000010268cf80 _PyFunction_Vectorcall + 256
28 org.python.python 0x000000010268ef60 method_vectorcall + 168
29 org.python.python 0x0000000102762b68 call_function + 416
30 org.python.python 0x0000000102760300 _PyEval_EvalFrameDefault + 23356
31 org.python.python 0x0000000102763a90 _PyEval_EvalCode + 2988
32 org.python.python 0x000000010268cf80 _PyFunction_Vectorcall + 256
33 org.python.python 0x000000010268c614 _PyObject_FastCallDictTstate + 140
34 org.python.python 0x000000010268d304 _PyObject_Call_Prepend + 148
35 org.python.python 0x00000001026ef828 slot_tp_init + 216
36 org.python.python 0x00000001026e6898 type_call + 352
37 org.python.python 0x000000010268c870 _PyObject_MakeTpCall + 360
38 org.python.python 0x0000000102762bc8 call_function + 512
39 org.python.python 0x0000000102760300 _PyEval_EvalFrameDefault + 23356
40 org.python.python 0x0000000102763a90 _PyEval_EvalCode + 2988
41 org.python.python 0x000000010268cf80 _PyFunction_Vectorcall + 256
42 org.python.python 0x0000000102762b68 call_function + 416
43 org.python.python 0x0000000102760284 _PyEval_EvalFrameDefault + 23232
44 org.python.python 0x0000000102763a90 _PyEval_EvalCode + 2988
45 org.python.python 0x000000010268cf80 _PyFunction_Vectorcall + 256
46 org.python.python 0x0000000102762b68 call_function + 416
47 org.python.python 0x0000000102760300 _PyEval_EvalFrameDefault + 23356
48 org.python.python 0x0000000102763a90 _PyEval_EvalCode + 2988
49 org.python.python 0x000000010268cf80 _PyFunction_Vectorcall + 256
50 org.python.python 0x000000010268ef60 method_vectorcall + 168
51 org.python.python 0x0000000102762b68 call_function + 416
52 org.python.python 0x0000000102760300 _PyEval_EvalFrameDefault + 23356
53 org.python.python 0x000000010268cffc function_code_fastcall + 112
54 org.python.python 0x0000000102762b68 call_function + 416
55 org.python.python 0x00000001027601e4 _PyEval_EvalFrameDefault + 23072
56 org.python.python 0x000000010268cffc function_code_fastcall + 112
57 org.python.python 0x000000010268df84 object_vacall + 256
58 org.python.python 0x000000010268e1ac PyObject_CallFunctionObjArgs + 48
59 org.python.python 0x00000001026962ec property_descr_set + 80
60 org.python.python 0x00000001026d3fa4 _PyObject_GenericSetAttrWithDict + 184
61 org.python.python 0x00000001026d3384 PyObject_SetAttr + 132
62 org.python.python 0x000000010275d650 _PyEval_EvalFrameDefault + 11916
63 org.python.python 0x0000000102763a90 _PyEval_EvalCode + 2988
64 org.python.python 0x000000010268cf80 _PyFunction_Vectorcall + 256
65 QtCore.abi3.so 0x000000011730a5b8 PyQtSlot::call(_object*, _object*) const + 68
66 QtCore.abi3.so 0x000000011730a440 PyQtSlot::invoke(void**, _object*, void*, bool) const + 292
67 QtCore.abi3.so 0x000000011730b36c PyQtSlotProxy::unislot(void**) + 92
68 QtCore.abi3.so 0x000000011730b2dc PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 68
69 QtCore 0x00000001268ae5dc 0x126800000 + 714204
70 QtGui 0x00000001347bbe3c QAction::activate(QAction::ActionEvent) + 368
71 QtWidgets 0x000000013405bc00 0x133ebc000 + 1702912
72 QtWidgets 0x00000001340597b4 0x133ebc000 + 1693620
73 QtWidgets 0x0000000134060410 QMenu::mouseReleaseEvent(QMouseEvent*) + 492
74 QtWidgets.abi3.so 0x0000000126dfb888 sipQMenu::mouseReleaseEvent(QMouseEvent*) + 148
75 QtWidgets 0x0000000133f135d0 QWidget::event(QEvent*) + 132
76 QtWidgets 0x0000000134060ab8 QMenu::event(QEvent*) + 1232
77 QtWidgets.abi3.so 0x0000000126dfaea0 sipQMenu::event(QEvent*) + 224
78 QtWidgets 0x0000000133ec9c90 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 272
79 QtWidgets 0x0000000133ecbea8 QApplication::notify(QObject*, QEvent*) + 5040
80 QtWidgets.abi3.so 0x0000000126eb8e04 sipQApplication::notify(QObject*, QEvent*) + 248
81 QtCore 0x0000000126865d40 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 208
82 QtWidgets 0x0000000133eca3c8 QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool, bool) + 908
83 QtWidgets 0x0000000133f276ac 0x133ebc000 + 439980
84 QtWidgets 0x0000000133f264e4 0x133ebc000 + 435428
85 QtWidgets 0x0000000133ec9c90 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 272
86 QtWidgets 0x0000000133ecacf8 QApplication::notify(QObject*, QEvent*) + 512
87 QtWidgets.abi3.so 0x0000000126eb8e04 sipQApplication::notify(QObject*, QEvent*) + 248
88 QtCore 0x0000000126865d40 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 208
89 QtGui 0x00000001344dcd98 QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 1820
90 QtGui 0x00000001345302d0 QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 444
91 libqcocoa.dylib 0x0000000136028344 0x136010000 + 99140
92 com.apple.CoreFoundation 0x0000000192fc9694 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 28
93 com.apple.CoreFoundation 0x0000000192fc95e0 __CFRunLoopDoSource0 + 208
94 com.apple.CoreFoundation 0x0000000192fc92cc __CFRunLoopDoSources0 + 268
95 com.apple.CoreFoundation 0x0000000192fc7c54 __CFRunLoopRun + 820
96 com.apple.CoreFoundation 0x0000000192fc71a8 CFRunLoopRunSpecific + 600
97 com.apple.HIToolbox 0x000000019aeecb40 RunCurrentEventLoopInMode + 292
98 com.apple.HIToolbox 0x000000019aeec7cc ReceiveNextEventCommon + 320
99 com.apple.HIToolbox 0x000000019aeec674 _BlockUntilNextEventMatchingListInModeWithFilter + 72
100 com.apple.AppKit 0x00000001957b9660 _DPSNextEvent + 836
101 com.apple.AppKit 0x00000001957b8000 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1292
102 com.apple.AppKit 0x00000001957a9e4c -[NSApplication run] + 596
103 libqcocoa.dylib 0x000000013602722c 0x136010000 + 94764
104 QtCore 0x000000012686f39c QEventLoop::exec(QFlags) + 544
105 QtWidgets 0x000000013405f088 0x133ebc000 + 1716360
106 QtWidgets 0x000000013405ef2c QMenu::exec(QPoint const&, QAction*) + 52
107 QtWidgets 0x000000013406f760 0x133ebc000 + 1783648
108 QtCore 0x00000001268ae86c 0x126800000 + 714860
109 QtWidgets 0x0000000133fc4768 0x133ebc000 + 1083240
110 QtWidgets 0x0000000133fc52dc QAbstractButton::mousePressEvent(QMouseEvent*) + 232
111 QtWidgets.abi3.so 0x0000000126e97620 sipQPushButton::mousePressEvent(QMouseEvent*) + 148
112 QtWidgets 0x0000000133f135d0 QWidget::event(QEvent*) + 132
113 QtWidgets.abi3.so 0x0000000126e97fa8 sipQPushButton::event(QEvent*) + 224
114 QtWidgets 0x0000000133ec9c90 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 272
115 QtWidgets 0x0000000133ecbea8 QApplication::notify(QObject*, QEvent*) + 5040
116 QtWidgets.abi3.so 0x0000000126eb8e04 sipQApplication::notify(QObject*, QEvent*) + 248
117 QtCore 0x0000000126865d40 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 208
118 QtWidgets 0x0000000133eca3c8 QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool, bool) + 908
119 QtWidgets 0x0000000133f27214 0x133ebc000 + 438804
120 QtWidgets 0x0000000133f264e4 0x133ebc000 + 435428
121 QtWidgets 0x0000000133ec9c90 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 272
122 QtWidgets 0x0000000133ecacf8 QApplication::notify(QObject*, QEvent*) + 512
123 QtWidgets.abi3.so 0x0000000126eb8e04 sipQApplication::notify(QObject*, QEvent*) + 248
124 QtCore 0x0000000126865d40 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 208
125 QtGui 0x00000001344dcd98 QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 1820
126 QtGui 0x00000001345302d0 QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 444
127 libqcocoa.dylib 0x0000000136028344 0x136010000 + 99140
128 com.apple.CoreFoundation 0x0000000192fc9694 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 28
129 com.apple.CoreFoundation 0x0000000192fc95e0 __CFRunLoopDoSource0 + 208
130 com.apple.CoreFoundation 0x0000000192fc92cc __CFRunLoopDoSources0 + 268
131 com.apple.CoreFoundation 0x0000000192fc7c54 __CFRunLoopRun + 820
132 com.apple.CoreFoundation 0x0000000192fc71a8 CFRunLoopRunSpecific + 600
133 com.apple.HIToolbox 0x000000019aeecb40 RunCurrentEventLoopInMode + 292
134 com.apple.HIToolbox 0x000000019aeec7cc ReceiveNextEventCommon + 320
135 com.apple.HIToolbox 0x000000019aeec674 _BlockUntilNextEventMatchingListInModeWithFilter + 72
136 com.apple.AppKit 0x00000001957b9660 _DPSNextEvent + 836
137 com.apple.AppKit 0x00000001957b8000 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1292
138 com.apple.AppKit 0x00000001957a9e4c -[NSApplication run] + 596
139 libqcocoa.dylib 0x000000013602722c 0x136010000 + 94764
140 QtCore 0x000000012686f39c QEventLoop::exec(QFlags) + 544
141 QtCore 0x00000001268663f4 QCoreApplication::exec() + 128
142 QtWidgets.abi3.so 0x0000000126fbe2b4 meth_QApplication_exec(_object*, _object*) + 96
143 org.python.python 0x00000001026cf1dc cfunction_call + 172
144 org.python.python 0x000000010268c870 _PyObject_MakeTpCall + 360
145 org.python.python 0x0000000102762bc8 call_function + 512
146 org.python.python 0x0000000102760208 _PyEval_EvalFrameDefault + 23108
147 org.python.python 0x000000010268cffc function_code_fastcall + 112
148 org.python.python 0x000000010268ef60 method_vectorcall + 168
149 org.python.python 0x0000000102762b68 call_function + 416
150 org.python.python 0x0000000102760208 _PyEval_EvalFrameDefault + 23108
151 org.python.python 0x0000000102763a90 _PyEval_EvalCode + 2988
152 org.python.python 0x000000010268cf80 _PyFunction_Vectorcall + 256
153 org.python.python 0x0000000102762b68 call_function + 416
154 org.python.python 0x0000000102760284 _PyEval_EvalFrameDefault + 23232
155 org.python.python 0x0000000102763a90 _PyEval_EvalCode + 2988
156 org.python.python 0x000000010275a6fc PyEval_EvalCode + 80
157 org.python.python 0x00000001027574a4 builtin_exec + 672
158 org.python.python 0x00000001026ce98c cfunction_vectorcall_FASTCALL + 232
159 org.python.python 0x0000000102762b68 call_function + 416
160 org.python.python 0x0000000102760284 _PyEval_EvalFrameDefault + 23232
161 org.python.python 0x0000000102763a90 _PyEval_EvalCode + 2988
162 org.python.python 0x000000010268cf80 _PyFunction_Vectorcall + 256
163 org.python.python 0x0000000102762b68 call_function + 416
164 org.python.python 0x0000000102760284 _PyEval_EvalFrameDefault + 23232
165 org.python.python 0x0000000102763a90 _PyEval_EvalCode + 2988
166 org.python.python 0x000000010268cf80 _PyFunction_Vectorcall + 256
167 org.python.python 0x00000001027bdea4 pymain_run_module + 200
168 org.python.python 0x00000001027bd4e8 Py_RunMain + 764
169 org.python.python 0x00000001027bdd54 pymain_main + 340
170 org.python.python 0x00000001027bdbf4 Py_Main + 36
171 edu.ucsf.cgl.ChimeraX 0x0000000102507d54 main + 128
172 libdyld.dylib 0x0000000192ee9430 start + 4
Thread 1:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x0000000192e9bee8 kevent64 + 8
1 QtWebEngineCore 0x00000001714017c8 0x16dde8000 + 56727496
2 QtWebEngineCore 0x00000001714016f8 0x16dde8000 + 56727288
3 QtWebEngineCore 0x0000000171388f6c 0x16dde8000 + 56233836
4 QtWebEngineCore 0x000000017134c4bc 0x16dde8000 + 55985340
5 QtWebEngineCore 0x00000001713a8d88 0x16dde8000 + 56364424
6 QtWebEngineCore 0x00000001713921a8 0x16dde8000 + 56271272
7 QtWebEngineCore 0x00000001713a8f10 0x16dde8000 + 56364816
8 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
9 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
10 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 2:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x0000000192e90dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x0000000192e91184 mach_msg + 76
2 QtWebEngineCore 0x00000001713d55e4 0x16dde8000 + 56546788
3 QtWebEngineCore 0x000000017139d66c 0x16dde8000 + 56317548
4 QtWebEngineCore 0x000000017139e0f4 0x16dde8000 + 56320244
5 QtWebEngineCore 0x000000017139dd20 0x16dde8000 + 56319264
6 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
7 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
8 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 3:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x0000000192e90dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x0000000192e91184 mach_msg + 76
2 QtWebEngineCore 0x00000001713d55e4 0x16dde8000 + 56546788
3 QtWebEngineCore 0x000000017139d66c 0x16dde8000 + 56317548
4 QtWebEngineCore 0x000000017139e0f4 0x16dde8000 + 56320244
5 QtWebEngineCore 0x000000017139dc9c 0x16dde8000 + 56319132
6 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
7 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
8 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 4:: Chrome_IOThread
0 libsystem_kernel.dylib 0x0000000192e9bee8 kevent64 + 8
1 QtWebEngineCore 0x00000001714017c8 0x16dde8000 + 56727496
2 QtWebEngineCore 0x00000001714016f8 0x16dde8000 + 56727288
3 QtWebEngineCore 0x0000000171388f6c 0x16dde8000 + 56233836
4 QtWebEngineCore 0x000000017134c4bc 0x16dde8000 + 55985340
5 QtWebEngineCore 0x00000001713a8d88 0x16dde8000 + 56364424
6 QtWebEngineCore 0x000000017049dc04 0x16dde8000 + 40590340
7 QtWebEngineCore 0x00000001713a8f10 0x16dde8000 + 56364816
8 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
9 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
10 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x0000000192e90dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x0000000192e91184 mach_msg + 76
2 QtWebEngineCore 0x00000001713d55e4 0x16dde8000 + 56546788
3 QtWebEngineCore 0x00000001713d53b0 0x16dde8000 + 56546224
4 QtWebEngineCore 0x000000017131f5a0 0x16dde8000 + 55801248
5 QtWebEngineCore 0x0000000171388f6c 0x16dde8000 + 56233836
6 QtWebEngineCore 0x000000017134c4bc 0x16dde8000 + 55985340
7 QtWebEngineCore 0x00000001713a8d88 0x16dde8000 + 56364424
8 QtWebEngineCore 0x00000001713a8f10 0x16dde8000 + 56364816
9 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
10 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
11 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 6:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x0000000192e94548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000192ecbdac _pthread_cond_wait + 1248
2 QtWebEngineCore 0x00000001713ce048 0x16dde8000 + 56516680
3 QtWebEngineCore 0x0000000172f82fe4 0x16dde8000 + 85569508
4 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
5 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
6 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 7:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x0000000192e90dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x0000000192e91184 mach_msg + 76
2 QtWebEngineCore 0x00000001713d55e4 0x16dde8000 + 56546788
3 QtWebEngineCore 0x00000001713d53b0 0x16dde8000 + 56546224
4 QtWebEngineCore 0x000000017131f5a0 0x16dde8000 + 55801248
5 QtWebEngineCore 0x0000000171388f6c 0x16dde8000 + 56233836
6 QtWebEngineCore 0x000000017134c4bc 0x16dde8000 + 55985340
7 QtWebEngineCore 0x00000001713a8d88 0x16dde8000 + 56364424
8 QtWebEngineCore 0x00000001713a8f10 0x16dde8000 + 56364816
9 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
10 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
11 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 8:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x0000000192e9bee8 kevent64 + 8
1 QtWebEngineCore 0x00000001714017c8 0x16dde8000 + 56727496
2 QtWebEngineCore 0x00000001714016f8 0x16dde8000 + 56727288
3 QtWebEngineCore 0x0000000171388f6c 0x16dde8000 + 56233836
4 QtWebEngineCore 0x000000017134c4bc 0x16dde8000 + 55985340
5 QtWebEngineCore 0x00000001713a8d88 0x16dde8000 + 56364424
6 QtWebEngineCore 0x00000001713a8f10 0x16dde8000 + 56364816
7 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
8 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
9 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 9:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x0000000192e90dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x0000000192e91184 mach_msg + 76
2 QtWebEngineCore 0x00000001713d55e4 0x16dde8000 + 56546788
3 QtWebEngineCore 0x00000001713d53b0 0x16dde8000 + 56546224
4 QtWebEngineCore 0x000000017131f5a0 0x16dde8000 + 55801248
5 QtWebEngineCore 0x0000000171388f6c 0x16dde8000 + 56233836
6 QtWebEngineCore 0x000000017134c4bc 0x16dde8000 + 55985340
7 QtWebEngineCore 0x00000001713a8d88 0x16dde8000 + 56364424
8 QtWebEngineCore 0x00000001713a8f10 0x16dde8000 + 56364816
9 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
10 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
11 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 10:: VizCompositorThread
0 libsystem_kernel.dylib 0x0000000192e90dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x0000000192e91184 mach_msg + 76
2 QtWebEngineCore 0x00000001713d55e4 0x16dde8000 + 56546788
3 QtWebEngineCore 0x00000001713d53b0 0x16dde8000 + 56546224
4 QtWebEngineCore 0x000000017131f5a0 0x16dde8000 + 55801248
5 QtWebEngineCore 0x0000000171388f6c 0x16dde8000 + 56233836
6 QtWebEngineCore 0x000000017134c4bc 0x16dde8000 + 55985340
7 QtWebEngineCore 0x00000001713a8d88 0x16dde8000 + 56364424
8 QtWebEngineCore 0x00000001713a8f10 0x16dde8000 + 56364816
9 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
10 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
11 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 11:: NetworkService
0 libsystem_kernel.dylib 0x0000000192e9bee8 kevent64 + 8
1 QtWebEngineCore 0x00000001714017c8 0x16dde8000 + 56727496
2 QtWebEngineCore 0x00000001714016f8 0x16dde8000 + 56727288
3 QtWebEngineCore 0x0000000171388f6c 0x16dde8000 + 56233836
4 QtWebEngineCore 0x000000017134c4bc 0x16dde8000 + 55985340
5 QtWebEngineCore 0x00000001713a8d88 0x16dde8000 + 56364424
6 QtWebEngineCore 0x00000001713a8f10 0x16dde8000 + 56364816
7 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
8 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
9 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 12:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x0000000192e90dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x0000000192e91184 mach_msg + 76
2 QtWebEngineCore 0x00000001713d55e4 0x16dde8000 + 56546788
3 QtWebEngineCore 0x00000001713d53b0 0x16dde8000 + 56546224
4 QtWebEngineCore 0x000000017131f5a0 0x16dde8000 + 55801248
5 QtWebEngineCore 0x0000000171388f6c 0x16dde8000 + 56233836
6 QtWebEngineCore 0x000000017134c4bc 0x16dde8000 + 55985340
7 QtWebEngineCore 0x00000001713a8d88 0x16dde8000 + 56364424
8 QtWebEngineCore 0x00000001713a8f10 0x16dde8000 + 56364816
9 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
10 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
11 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 13:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x0000000192e90dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x0000000192e91184 mach_msg + 76
2 QtWebEngineCore 0x00000001713d55e4 0x16dde8000 + 56546788
3 QtWebEngineCore 0x000000017139d66c 0x16dde8000 + 56317548
4 QtWebEngineCore 0x000000017139e0f4 0x16dde8000 + 56320244
5 QtWebEngineCore 0x000000017139dd78 0x16dde8000 + 56319352
6 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
7 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
8 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x0000000192e90dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x0000000192e91184 mach_msg + 76
2 QtWebEngineCore 0x00000001713d55e4 0x16dde8000 + 56546788
3 QtWebEngineCore 0x00000001713d53b0 0x16dde8000 + 56546224
4 QtWebEngineCore 0x000000017131f5a0 0x16dde8000 + 55801248
5 QtWebEngineCore 0x0000000171388f6c 0x16dde8000 + 56233836
6 QtWebEngineCore 0x000000017134c4bc 0x16dde8000 + 55985340
7 QtWebEngineCore 0x00000001713a8d88 0x16dde8000 + 56364424
8 QtWebEngineCore 0x00000001713a8f10 0x16dde8000 + 56364816
9 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
10 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
11 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 15:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x0000000192e90dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x0000000192e91184 mach_msg + 76
2 com.apple.CoreFoundation 0x0000000192fc9910 __CFRunLoopServiceMachPort + 372
3 com.apple.CoreFoundation 0x0000000192fc7ddc __CFRunLoopRun + 1212
4 com.apple.CoreFoundation 0x0000000192fc71a8 CFRunLoopRunSpecific + 600
5 com.apple.AppKit 0x0000000195938334 _NSEventThread + 196
6 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
7 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 16:: MemoryInfra
0 libsystem_kernel.dylib 0x0000000192e90dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x0000000192e91184 mach_msg + 76
2 QtWebEngineCore 0x00000001713d55e4 0x16dde8000 + 56546788
3 QtWebEngineCore 0x00000001713d53b0 0x16dde8000 + 56546224
4 QtWebEngineCore 0x000000017131f5a0 0x16dde8000 + 55801248
5 QtWebEngineCore 0x0000000171388f6c 0x16dde8000 + 56233836
6 QtWebEngineCore 0x000000017134c4bc 0x16dde8000 + 55985340
7 QtWebEngineCore 0x00000001713a8d88 0x16dde8000 + 56364424
8 QtWebEngineCore 0x00000001713a8f10 0x16dde8000 + 56364816
9 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
10 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
11 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 17:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x0000000192e90dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x0000000192e91184 mach_msg + 76
2 QtWebEngineCore 0x00000001713d55e4 0x16dde8000 + 56546788
3 QtWebEngineCore 0x000000017139d66c 0x16dde8000 + 56317548
4 QtWebEngineCore 0x000000017139de84 0x16dde8000 + 56319620
5 QtWebEngineCore 0x000000017139dcc8 0x16dde8000 + 56319176
6 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
7 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
8 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 18:
0 libsystem_kernel.dylib 0x0000000192e94548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000192ecbdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000103705b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 19:
0 libsystem_kernel.dylib 0x0000000192e94548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000192ecbdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000103705b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 20:
0 libsystem_kernel.dylib 0x0000000192e94548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000192ecbdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000103705b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 21:
0 libsystem_kernel.dylib 0x0000000192e94548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000192ecbdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000103705b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 22:
0 libsystem_kernel.dylib 0x0000000192e94548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000192ecbdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000103705b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 23:
0 libsystem_kernel.dylib 0x0000000192e94548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000192ecbdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000103705b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 24:
0 libsystem_kernel.dylib 0x0000000192e94548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000192ecbdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000103705b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 25:
0 libsystem_pthread.dylib 0x0000000192ec65cc start_wqthread + 0
Thread 26:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x0000000192e90dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x0000000192e91184 mach_msg + 76
2 QtWebEngineCore 0x00000001713d55e4 0x16dde8000 + 56546788
3 QtWebEngineCore 0x000000017139d66c 0x16dde8000 + 56317548
4 QtWebEngineCore 0x000000017139e0f4 0x16dde8000 + 56320244
5 QtWebEngineCore 0x000000017139dc9c 0x16dde8000 + 56319132
6 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
7 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
8 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 27:: Dispatch queue: com.apple.root.user-interactive-qos
0 libsystem_kernel.dylib 0x0000000192e90e28 semaphore_timedwait_trap + 8
1 libdispatch.dylib 0x0000000192d1c4a4 _dispatch_sema4_timedwait + 64
2 libdispatch.dylib 0x0000000192d1cab4 _dispatch_semaphore_wait_slow + 76
3 com.apple.AppKit 0x00000001960ab4ec __22-[NSCGSLocalFence set]_block_invoke_2 + 164
4 com.apple.QuartzCore 0x000000019926a1ac CA::Transaction::run_commit_handlers(CATransactionPhase) + 120
5 com.apple.QuartzCore 0x00000001993b34a0 CA::Context::commit_transaction(CA::Transaction*, double, double*) + 740
6 com.apple.QuartzCore 0x0000000199269310 CA::Transaction::commit() + 684
7 com.apple.AppKit 0x000000019580cd08 NSPerformVisuallyAtomicChange + 160
8 com.apple.AppKit 0x0000000195a321c8 __42-[NSAnimation(NSInternal) _runInNewThread]_block_invoke + 116
9 libdispatch.dylib 0x0000000192d1a128 _dispatch_call_block_and_release + 32
10 libdispatch.dylib 0x0000000192d1bec0 _dispatch_client_callout + 20
11 libdispatch.dylib 0x0000000192d2d7b0 _dispatch_root_queue_drain + 688
12 libdispatch.dylib 0x0000000192d2de90 _dispatch_worker_thread2 + 112
13 libsystem_pthread.dylib 0x0000000192ec7860 _pthread_wqthread + 216
14 libsystem_pthread.dylib 0x0000000192ec65d4 start_wqthread + 8
Thread 28:
0 libsystem_pthread.dylib 0x0000000192ec65cc start_wqthread + 0
Thread 29:
0 libsystem_kernel.dylib 0x0000000192e94548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000192ecbdac _pthread_cond_wait + 1248
2 org.python.python 0x00000001027ae4a4 PyThread_acquire_lock_timed + 324
3 org.python.python 0x00000001027fce30 acquire_timed + 120
4 org.python.python 0x00000001027fcb10 lock_PyThread_acquire_lock + 56
5 org.python.python 0x000000010269517c method_vectorcall_VARARGS_KEYWORDS + 396
6 org.python.python 0x0000000102762b68 call_function + 416
7 org.python.python 0x00000001027601e4 _PyEval_EvalFrameDefault + 23072
8 org.python.python 0x0000000102763a90 _PyEval_EvalCode + 2988
9 org.python.python 0x000000010268cf80 _PyFunction_Vectorcall + 256
10 org.python.python 0x0000000102762b68 call_function + 416
11 org.python.python 0x00000001027601e4 _PyEval_EvalFrameDefault + 23072
12 org.python.python 0x0000000102763a90 _PyEval_EvalCode + 2988
13 org.python.python 0x000000010268cf80 _PyFunction_Vectorcall + 256
14 org.python.python 0x0000000102762b68 call_function + 416
15 org.python.python 0x00000001027601e4 _PyEval_EvalFrameDefault + 23072
16 org.python.python 0x000000010268cffc function_code_fastcall + 112
17 org.python.python 0x0000000102762b68 call_function + 416
18 org.python.python 0x00000001027601e4 _PyEval_EvalFrameDefault + 23072
19 org.python.python 0x000000010268cffc function_code_fastcall + 112
20 org.python.python 0x0000000102762b68 call_function + 416
21 org.python.python 0x00000001027601e4 _PyEval_EvalFrameDefault + 23072
22 org.python.python 0x000000010268cffc function_code_fastcall + 112
23 org.python.python 0x000000010268efd4 method_vectorcall + 284
24 org.python.python 0x00000001027fd9a4 t_bootstrap + 72
25 org.python.python 0x00000001027ae138 pythread_wrapper + 28
26 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
27 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 30:
0 libsystem_pthread.dylib 0x0000000192ec65cc start_wqthread + 0
Thread 31:
0 libsystem_kernel.dylib 0x0000000192e94548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000192ecbdac _pthread_cond_wait + 1248
2 libopenblas.0.dylib 0x000000035b1770cc blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 32:
0 libsystem_kernel.dylib 0x0000000192e94548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000192ecbdac _pthread_cond_wait + 1248
2 libopenblas.0.dylib 0x000000035b1770cc blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 33:
0 libsystem_kernel.dylib 0x0000000192e94548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000192ecbdac _pthread_cond_wait + 1248
2 libopenblas.0.dylib 0x000000035b1770cc blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 34:
0 libsystem_kernel.dylib 0x0000000192e94548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000192ecbdac _pthread_cond_wait + 1248
2 libopenblas.0.dylib 0x000000035b1770cc blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 35:
0 libsystem_kernel.dylib 0x0000000192e94548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000192ecbdac _pthread_cond_wait + 1248
2 libopenblas.0.dylib 0x000000035b1770cc blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 36:
0 libsystem_kernel.dylib 0x0000000192e94548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000192ecbdac _pthread_cond_wait + 1248
2 libopenblas.0.dylib 0x000000035b1770cc blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 37:
0 libsystem_kernel.dylib 0x0000000192e94548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000192ecbdac _pthread_cond_wait + 1248
2 libopenblas.0.dylib 0x000000035b1770cc blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 38:
0 libsystem_pthread.dylib 0x0000000192ec65cc start_wqthread + 0
Thread 39:
0 libsystem_pthread.dylib 0x0000000192ec65cc start_wqthread + 0
Thread 40:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x0000000192e90dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x0000000192e91184 mach_msg + 76
2 QtWebEngineCore 0x00000001713d55e4 0x16dde8000 + 56546788
3 QtWebEngineCore 0x000000017139d66c 0x16dde8000 + 56317548
4 QtWebEngineCore 0x000000017139e0f4 0x16dde8000 + 56320244
5 QtWebEngineCore 0x000000017139dd20 0x16dde8000 + 56319264
6 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
7 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
8 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 41:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x0000000192e90dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x0000000192e91184 mach_msg + 76
2 QtWebEngineCore 0x00000001713d55e4 0x16dde8000 + 56546788
3 QtWebEngineCore 0x000000017139d66c 0x16dde8000 + 56317548
4 QtWebEngineCore 0x000000017139e0f4 0x16dde8000 + 56320244
5 QtWebEngineCore 0x000000017139dd20 0x16dde8000 + 56319264
6 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
7 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
8 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 42:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x0000000192e90dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x0000000192e91184 mach_msg + 76
2 QtWebEngineCore 0x00000001713d55e4 0x16dde8000 + 56546788
3 QtWebEngineCore 0x000000017139d66c 0x16dde8000 + 56317548
4 QtWebEngineCore 0x000000017139de84 0x16dde8000 + 56319620
5 QtWebEngineCore 0x000000017139dd20 0x16dde8000 + 56319264
6 QtWebEngineCore 0x00000001713cebe4 0x16dde8000 + 56519652
7 libsystem_pthread.dylib 0x0000000192ecb878 _pthread_start + 320
8 libsystem_pthread.dylib 0x0000000192ec65e0 thread_start + 8
Thread 0 crashed with ARM Thread State (64-bit):
x0: 0x0000000000000000 x1: 0x0000000000000000 x2: 0x0000000000000001 x3: 0x0000000192f13ead
x4: 0x0000000128057c18 x5: 0xcb01b3379105c42e x6: 0x000000016d8f2c10 x7: 0x00000001376047b0
x8: 0x8084934faf9cbab2 x9: 0x8084934eadc307f2 x10: 0x0000000000001bba x11: 0x0000000209e23b5e
x12: 0x0000000209e23b5e x13: 0x0000000000000004 x14: 0x0000000000000881 x15: 0x000000008000001f
x16: 0x0000000000000148 x17: 0x0000000201952e90 x18: 0x0000000340313940 x19: 0x000000000000000b
x20: 0x00000001025fbd40 x21: 0x0000000000000103 x22: 0x00000001025fbe20 x23: 0x000000016d8f2d50
x24: 0x0000000000000002 x25: 0x0000000000000008 x26: 0x0000000000000008 x27: 0x0000000000000002
x28: 0x000000016d8f2d08 fp: 0x0000000128057b50 lr: 0x0000000192ecb43c
sp: 0x0000000128057b30 pc: 0x0000000192e98e68 cpsr: 0x40000000
far: 0x000000036d206d58 esr: 0x56000080
Binary Images:
0x102504000 - 0x102507fff +edu.ucsf.cgl.ChimeraX (1.5.0 - 1.5.0.0) /Applications/ChimeraX-1.5.app/Contents/MacOS/ChimeraX
0x102540000 - 0x1025bffff dyld (852.2) /usr/lib/dyld
0x102648000 - 0x1028b7fff +org.python.python (3.9.11, [c] 2001-2021 Python Software Foundation. - 3.9.11) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/Python
0x102c2c000 - 0x102c2ffff +_heapq.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_heapq.cpython-39-darwin.so
0x102e40000 - 0x102e47fff +binascii.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/binascii.cpython-39-darwin.so
0x102e58000 - 0x102e5ffff +zlib.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/zlib.cpython-39-darwin.so
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0x2aa268000 - 0x2aa28bfff +cython_blas.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/linalg/cython_blas.cpython-39-darwin.so
0x2ec500000 - 0x2ec51bfff +_voronoi.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/spatial/_voronoi.cpython-39-darwin.so
0x2ed760000 - 0x2ed7abfff +_cythonized_array_utils.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/linalg/_cythonized_array_utils.cpython-39-darwin.so
0x2eddf8000 - 0x2ede73fff +_specfun.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/special/_specfun.cpython-39-darwin.so
0x2edf5c000 - 0x2edfabfff +_fblas.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/linalg/_fblas.cpython-39-darwin.so
0x2ef5a8000 - 0x2ef5d7fff +_decomp_update.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/linalg/_decomp_update.cpython-39-darwin.so
0x2f704c000 - 0x2f713ffff +_flapack.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/linalg/_flapack.cpython-39-darwin.so
0x2f7210000 - 0x2f726bfff +_csparsetools.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/_csparsetools.cpython-39-darwin.so
0x2f745c000 - 0x2f7487fff +_iterative.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/linalg/_isolve/_iterative.cpython-39-darwin.so
0x2f76c4000 - 0x2f7733fff +cython_lapack.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/linalg/cython_lapack.cpython-39-darwin.so
0x2f77dc000 - 0x2f7817fff +_superlu.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/_superlu.cpython-39-darwin.so
0x2f7838000 - 0x2f789ffff +_arpack.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/linalg/_eigen/arpack/_arpack.cpython-39-darwin.so
0x2f7ab4000 - 0x2f7dabfff +libgfortran.5.dylib (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/.dylibs/libgfortran.5.dylib
0x2f7dd8000 - 0x2f7dfffff +_fitpack.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/interpolate/_fitpack.cpython-39-darwin.so
0x2f8528000 - 0x2f856ffff +_shortest_path.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/csgraph/_shortest_path.cpython-39-darwin.so
0x2f8690000 - 0x2f89affff +_sparsetools.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/_sparsetools.cpython-39-darwin.so
0x2f8af4000 - 0x2f8b1ffff +_flow.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/csgraph/_flow.cpython-39-darwin.so
0x2f8b40000 - 0x2f8b6bfff +_matching.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/csgraph/_matching.cpython-39-darwin.so
0x2f8b88000 - 0x2f8baffff +_reordering.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/csgraph/_reordering.cpython-39-darwin.so
0x2f8bcc000 - 0x2f8c17fff +dfitpack.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/interpolate/dfitpack.cpython-39-darwin.so
0x2f8c34000 - 0x2f8c5ffff +_bspl.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/interpolate/_bspl.cpython-39-darwin.so
0x2f8cc0000 - 0x2f8cf7fff +_ppoly.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/interpolate/_ppoly.cpython-39-darwin.so
0x2f8d14000 - 0x2f8d4bfff +interpnd.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/interpolate/interpnd.cpython-39-darwin.so
0x2f8d6c000 - 0x2f8de7fff +_ckdtree.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/spatial/_ckdtree.cpython-39-darwin.so
0x2f8e60000 - 0x2f8e7bfff +_hausdorff.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/spatial/_hausdorff.cpython-39-darwin.so
0x2f9da0000 - 0x2f9dd3fff +_distance_pybind.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/spatial/_distance_pybind.cpython-39-darwin.so
0x2f9e44000 - 0x2f9e57fff +libopenmm.dylib (0) /Users/USER/Library/Application Support/ChimeraX/*/libopenmm.dylib
0x30e19c000 - 0x30e253fff +_qhull.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/spatial/_qhull.cpython-39-darwin.so
0x30e438000 - 0x30e49ffff +_rotation.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/spatial/transform/_rotation.cpython-39-darwin.so
0x30e550000 - 0x30e587fff +_rbfinterp_pythran.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/interpolate/_rbfinterp_pythran.cpython-39-darwin.so
0x30e6a8000 - 0x30eab7fff +clipper_python.cpython-39-darwin.so (0) /Users/USER/Library/Application Support/ChimeraX/*/clipper_python.cpython-39-darwin.so
0x30eb08000 - 0x30eb43fff +libclipper_cx.dylib (0) /Users/USER/Library/Application Support/ChimeraX/*/libclipper_cx.dylib
0x30eba4000 - 0x30ec43fff +libmmdb2.dylib (0) /Users/USER/Library/Application Support/ChimeraX/*/libmmdb2.dylib
0x30ece4000 - 0x30ed0ffff +libccp4.dylib (0) /Users/USER/Library/Application Support/ChimeraX/*/libccp4.dylib
0x30f630000 - 0x30f787fff +libclipper.dylib (0) /Users/USER/Library/Application Support/ChimeraX/*/libclipper.dylib
0x30fa38000 - 0x30fa63fff +mcsplit.cpython-39-darwin.so (0) /Users/USER/Library/Application Support/ChimeraX/*/mcsplit.cpython-39-darwin.so
0x313960000 - 0x31397bfff +_path.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/matplotlib/_path.cpython-39-darwin.so
0x33ffc8000 - 0x33ffe3fff +_image.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/matplotlib/_image.cpython-39-darwin.so
0x35b00c000 - 0x35c273fff +libopenblas.0.dylib (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/.dylibs/libopenblas.0.dylib
0x36a780000 - 0x36a807fff +ft2font.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/matplotlib/ft2font.cpython-39-darwin.so
0x36a840000 - 0x36a857fff +_cext.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/kiwisolver/_cext.cpython-39-darwin.so
0x36ae80000 - 0x36aea7fff +_backend_agg.cpython-39-darwin.so (0) /Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/matplotlib/backends/_backend_agg.cpython-39-darwin.so
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)
Writable regions: Total=5.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=5.0G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 3264K 6
CG image 240K 12
CoreAnimation 208K 13
CoreGraphics 32K 2
CoreUI image data 3520K 26
Foundation 48K 2
Kernel Alloc Once 32K 1
MALLOC 3.4G 750
MALLOC guard page 192K 10
MALLOC_MEDIUM (reserved) 592.0M 6 reserved VM address space (unallocated)
Mach message 64K 2
OpenGL GLSL 384K 4
STACK GUARD 672K 42
Stack 195.5M 43
Stack Guard 56.0M 1
VM_ALLOCATE 527.6M 1008
VM_ALLOCATE (reserved) 352.0M 3 reserved VM address space (unallocated)
__AUTH 1018K 259
__AUTH_CONST 15.0M 450
__DATA 21.2M 671
__DATA_CONST 26.4M 663
__DATA_DIRTY 1799K 208
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 532.2M 222
__OBJC_CONST 3269K 250
__OBJC_RO 75.1M 1
__OBJC_RW 2576K 1
__TEXT 614.4M 684
__UNICODE 588K 1
mapped file 284.2M 63
shared memory 3184K 23
=========== ======= =======
TOTAL 6.6G 5432
TOTAL, minus reserved VM space 5.7G 5432
===== Log before crash start =====
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/macentol_a/Downloads/cryosparc_P71_J484_005_volume_map_half_A.mrc
Opened cryosparc_P71_J484_005_volume_map_half_A.mrc as #1, grid size
650,650,650, pixel 1.67, shown at step 1, values float32
> volume #1 region 0,0,0,649,649,649 step 4
> volume #1 step 1
> volume #1 change image level -0.3021,0 level 1.197,0.8 level 2.419,1
> volume #1 level 0.9581
> surface dust #1 size 20
> open /Users/macentol_a/Downloads/robetta_models_493047_1.2.pdb
Chain information for robetta_models_493047_1.2.pdb #2
---
Chain | Description
A | No description available
> fitmap #2 inMap #1
Fit molecule robetta_models_493047_1.2.pdb (#2) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.07283, steps = 988
shifted from previous position = 22.6
rotated from previous position = 21.3 degrees
atoms outside contour = 1508, contour level = 0.95811
Position of robetta_models_493047_1.2.pdb (#2) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
0.96202979 -0.17780047 -0.20708860 1.65845812
0.22322659 0.94912517 0.22210653 -1.82247425
0.15706235 -0.25990078 0.95277647 4.72698785
Axis -0.66475252 -0.50221285 0.55306993
Axis point 0.00000000 12.02832480 5.47242825
Rotation angle (degrees) 21.25666351
Shift along axis 2.42716059
> select add #2
1508 atoms, 1515 bonds, 98 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.96203,-0.1778,-0.20709,387.72,0.22323,0.94913,0.22211,323.96,0.15706,-0.2599,0.95278,-10.005
> view matrix models
> #2,0.96203,-0.1778,-0.20709,441.28,0.22323,0.94913,0.22211,347.09,0.15706,-0.2599,0.95278,527.2
> view matrix models
> #2,0.96203,-0.1778,-0.20709,444.28,0.22323,0.94913,0.22211,351.4,0.15706,-0.2599,0.95278,530.91
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.88928,0.45204,0.069644,415.21,-0.13699,0.11797,0.98352,399.92,0.43637,-0.88416,0.16683,555.11
> fitmap #2 inMap #1
Fit molecule robetta_models_493047_1.2.pdb (#2) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.5766, steps = 196
shifted from previous position = 3.25
rotated from previous position = 9.93 degrees
atoms outside contour = 1217, contour level = 0.95811
Position of robetta_models_493047_1.2.pdb (#2) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
0.89123899 0.39018880 0.23118341 421.31079595
-0.27519274 0.06007249 0.95951042 400.10846804
0.36050246 -0.91877309 0.16091607 555.50774377
Axis -0.94062382 -0.06476156 -0.33321579
Axis point 0.00000000 384.11412543 0.27237744
Rotation angle (degrees) 86.78322810
Shift along axis -607.31057344
[deleted to fit within ticket limits]
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 44
shifted from previous position = 0.0361
rotated from previous position = 0.04 degrees
atoms outside contour = 1069, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37523632 0.08586039 0.92294404 439.49663370
-0.67602594 -0.70658304 -0.20911559 438.13061267
0.63418186 -0.70240188 0.32317947 645.57400698
Axis -0.51790599 0.30317417 -0.79991175
Axis point 109.50731886 321.92862619 0.00000000
Rotation angle (degrees) 151.56043726
Shift along axis -611.19028558
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7262, steps = 28
shifted from previous position = 0.0385
rotated from previous position = 0.0539 degrees
atoms outside contour = 1068, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37545702 0.08503412 0.92293078 439.49922236
-0.67550001 -0.70692236 -0.20966762 438.13845752
0.63461151 -0.70216093 0.32285951 645.58062022
Axis -0.51795800 0.30322701 -0.79985804
Axis point 109.29122366 322.00194705 0.00000000
Rotation angle (degrees) 151.61341824
Shift along axis -611.15957708
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 48
shifted from previous position = 0.031
rotated from previous position = 0.0554 degrees
atoms outside contour = 1068, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37482753 0.08570839 0.92312426 439.49022873
-0.67599139 -0.70668937 -0.20886785 438.11979550
0.63446037 -0.70231347 0.32282476 645.55222633
Axis -0.51812576 0.30310167 -0.79979689
Axis point 109.38829947 321.93215314 0.00000000
Rotation angle (degrees) 151.56358031
Shift along axis -611.22703065
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 48
shifted from previous position = 0.0321
rotated from previous position = 0.0226 degrees
atoms outside contour = 1069, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37500643 0.08546952 0.92307374 439.50029837
-0.67571817 -0.70689283 -0.20906333 438.13868845
0.63464567 -0.70213780 0.32284266 645.58163638
Axis -0.51810235 0.30306835 -0.79982469
Axis point 109.31964867 321.94563724 0.00000000
Rotation angle (degrees) 151.58551484
Shift along axis -611.27230119
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 60
shifted from previous position = 0.00449
rotated from previous position = 0.00885 degrees
atoms outside contour = 1070, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37514198 0.08543060 0.92302227 439.49914891
-0.67569258 -0.70687835 -0.20919496 438.13773402
0.63459281 -0.70215711 0.32290456 645.58496027
Axis -0.51804386 0.30310464 -0.79984882
Axis point 109.33426634 321.95245440 0.00000000
Rotation angle (degrees) 151.58907684
Shift along axis -611.24862747
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 60
shifted from previous position = 0.0259
rotated from previous position = 0.0417 degrees
atoms outside contour = 1070, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37576230 0.08525757 0.92278591 439.50046984
-0.67562500 -0.70675800 -0.20981891 438.13510144
0.63429768 -0.70229927 0.32317516 645.58470465
Axis -0.51776835 0.30330159 -0.79995255
Axis point 109.42246420 321.98883968 0.00000000
Rotation angle (degrees) 151.60289136
Shift along axis -611.10948912
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 28
shifted from previous position = 0.0341
rotated from previous position = 0.0576 degrees
atoms outside contour = 1069, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37599813 0.08433280 0.92277483 439.51306490
-0.67511958 -0.70704733 -0.21047000 438.13474499
0.63469596 -0.70211968 0.32278321 645.57471595
Axis -0.51781961 0.30341297 -0.79987713
Axis point 109.20786354 322.07763325 0.00000000
Rotation angle (degrees) 151.65818585
Shift along axis -611.03317230
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7262, steps = 44
shifted from previous position = 0.0495
rotated from previous position = 0.0291 degrees
atoms outside contour = 1070, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37638392 0.08459030 0.92259396 439.51437854
-0.67513939 -0.70698676 -0.21060987 438.14984636
0.63444617 -0.70214970 0.32320870 645.60618202
Axis -0.51760258 0.30342616 -0.80001258
Axis point 109.33053063 322.05418913 0.00000000
Rotation angle (degrees) 151.65213541
Shift along axis -611.04072114
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7262, steps = 28
shifted from previous position = 0.0344
rotated from previous position = 0.0298 degrees
atoms outside contour = 1068, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37624416 0.08411777 0.92269417 439.51815742
-0.67497443 -0.70709670 -0.21076951 438.13958519
0.63470454 -0.70209576 0.32281835 645.60010004
Axis -0.51774216 0.30347324 -0.79990440
Axis point 109.18593080 322.10688940 0.00000000
Rotation angle (degrees) 151.67389475
Shift along axis -611.01179796
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7262, steps = 60
shifted from previous position = 0.0387
rotated from previous position = 0.0486 degrees
atoms outside contour = 1067, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37690178 0.08364289 0.92246892 439.53134854
-0.67472525 -0.70709714 -0.21156432 438.15553445
0.63457929 -0.70215205 0.32294214 645.57775041
Axis -0.51750480 0.30368527 -0.79997752
Axis point 109.20387327 322.17136826 0.00000000
Rotation angle (degrees) 151.70616896
Shift along axis -610.84589105
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 40
shifted from previous position = 0.0531
rotated from previous position = 0.0611 degrees
atoms outside contour = 1070, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37621133 0.08438821 0.92268286 439.50454483
-0.67496037 -0.70718228 -0.21052725 438.14747313
0.63473895 -0.70197710 0.32300869 645.61732055
Axis -0.51773316 0.30334349 -0.79995944
Axis point 109.20801650 322.05757224 0.00000000
Rotation angle (degrees) 151.66558879
Shift along axis -611.10456244
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7262, steps = 44
shifted from previous position = 0.0362
rotated from previous position = 0.0405 degrees
atoms outside contour = 1071, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37675291 0.08413566 0.92248492 439.51295633
-0.67494462 -0.70700504 -0.21117203 438.13962210
0.63443439 -0.70218591 0.32315312 645.59457819
Axis -0.51749628 0.30358628 -0.80002061
Axis point 109.28900986 322.10986340 0.00000000
Rotation angle (degrees) 151.67886530
Shift along axis -610.92210992
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 40
shifted from previous position = 0.0249
rotated from previous position = 0.04 degrees
atoms outside contour = 1070, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37696917 0.08350072 0.92245427 439.51829212
-0.67459665 -0.70718970 -0.21166501 438.13664055
0.63467598 -0.70207574 0.32291803 645.58669013
Axis -0.51750480 0.30367738 -0.79998052
Axis point 109.15143211 322.17100745 0.00000000
Rotation angle (degrees) 151.71729571
Shift along axis -610.85741683
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 60
shifted from previous position = 0.0434
rotated from previous position = 0.0514 degrees
atoms outside contour = 1067, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37653387 0.08427645 0.92256150 439.49242054
-0.67494673 -0.70709036 -0.21087943 438.13329973
0.63456217 -0.70208311 0.32312559 645.63085544
Axis -0.51758885 0.30346930 -0.80000510
Axis point 109.24333398 322.08429838 0.00000000
Rotation angle (degrees) 151.67245382
Shift along axis -611.02434902
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 44
shifted from previous position = 0.0575
rotated from previous position = 0.0445 degrees
atoms outside contour = 1070, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37711406 0.08386845 0.92236168 439.51477599
-0.67483046 -0.70697856 -0.21162507 438.13501735
0.63434126 -0.70224454 0.32320854 645.58672507
Axis -0.51736323 0.30372046 -0.80005573
Axis point 109.29745160 322.14662734 0.00000000
Rotation angle (degrees) 151.69573237
Shift along axis -610.82357203
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 40
shifted from previous position = 0.028
rotated from previous position = 0.0276 degrees
atoms outside contour = 1069, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37707673 0.08344984 0.92241491 439.51686732
-0.67458616 -0.70716232 -0.21178990 438.13358095
0.63462323 -0.70210938 0.32294856 645.58319259
Axis -0.51745888 0.30372107 -0.79999363
Axis point 109.16345776 322.17998403 0.00000000
Rotation angle (degrees) 151.72029703
Shift along axis -610.82394917
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 60
shifted from previous position = 0.0167
rotated from previous position = 0.124 degrees
atoms outside contour = 1069, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37578478 0.08509818 0.92279147 439.48590580
-0.67561348 -0.70672885 -0.20995417 438.13141492
0.63429664 -0.70234794 0.32307142 645.58125870
Axis -0.51777506 0.30336580 -0.79992386
Axis point 109.39156364 322.01874038 0.00000000
Rotation angle (degrees) 151.60873834
Shift along axis -611.05660647
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 44
shifted from previous position = 0.0246
rotated from previous position = 0.13 degrees
atoms outside contour = 1071, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37432299 0.08678405 0.92322848 439.48162518
-0.67644748 -0.70655327 -0.20784918 438.13761350
0.63427211 -0.70231830 0.32318399 645.59258744
Axis -0.51819705 0.30282243 -0.79985648
Axis point 109.55393242 321.81143791 0.00000000
Rotation angle (degrees) 151.50348556
Shift along axis -611.44160284
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 40
shifted from previous position = 0.0502
rotated from previous position = 0.0336 degrees
atoms outside contour = 1069, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37447372 0.08622615 0.92321963 439.51082005
-0.67632284 -0.70652791 -0.20834040 438.13544110
0.63431605 -0.70241252 0.32289285 645.54286106
Axis -0.51819788 0.30301086 -0.79978458
Axis point 109.49443856 321.88694678 0.00000000
Rotation angle (degrees) 151.52850489
Shift along axis -611.28900194
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 40
shifted from previous position = 0.0413
rotated from previous position = 0.0276 degrees
atoms outside contour = 1067, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37474364 0.08589709 0.92314078 439.49282605
-0.67602799 -0.70671253 -0.20867092 438.12969468
0.63447093 -0.70226711 0.32290487 645.56916382
Axis -0.51814238 0.30302520 -0.79981510
Axis point 109.40783163 321.90755933 0.00000000
Rotation angle (degrees) 151.55510890
Shift along axis -611.29148695
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 60
shifted from previous position = 0.0304
rotated from previous position = 0.0242 degrees
atoms outside contour = 1070, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37512720 0.08584281 0.92299003 439.49956669
-0.67595075 -0.70668969 -0.20899823 438.13967347
0.63432655 -0.70229672 0.32312404 645.58512488
Axis -0.51797199 0.30310168 -0.79989649
Axis point 109.46214443 321.92097571 0.00000000
Rotation angle (degrees) 151.56362359
Shift along axis -611.24887015
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 40
shifted from previous position = 0.0313
rotated from previous position = 0.0441 degrees
atoms outside contour = 1069, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37545428 0.08515636 0.92292062 439.50010548
-0.67561859 -0.70681959 -0.20963201 438.12892999
0.63448688 -0.70224957 0.32291166 645.56770089
Axis -0.51792979 0.30325437 -0.79986594
Axis point 109.34257603 321.99296106 0.00000000
Rotation angle (degrees) 151.60391941
Shift along axis -611.13330134
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 60
shifted from previous position = 0.0153
rotated from previous position = 0.212 degrees
atoms outside contour = 1068, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37292786 0.08774087 0.92370252 439.47591766
-0.67714329 -0.70634375 -0.20628977 438.13047648
0.63435146 -0.70241017 0.32282840 645.55505011
Axis -0.51867886 0.30250778 -0.79966323
Axis point 109.59095739 321.70905137 0.00000000
Rotation angle (degrees) 151.42857515
Shift along axis -611.63562954
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 48
shifted from previous position = 0.0279
rotated from previous position = 0.0415 degrees
atoms outside contour = 1069, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37274242 0.08838194 0.92371625 439.47216339
-0.67753891 -0.70609435 -0.20584407 438.12536156
0.63403793 -0.70258053 0.32307352 645.54887825
Axis -0.51864648 0.30245543 -0.79970404
Axis point 109.75266359 321.64994995 0.00000000
Rotation angle (degrees) 151.38787185
Shift along axis -611.66533753
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 40
shifted from previous position = 0.0289
rotated from previous position = 0.0851 degrees
atoms outside contour = 1068, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37350477 0.08716148 0.92352426 439.48164237
-0.67681084 -0.70643927 -0.20705225 438.12600864
0.63436683 -0.70238624 0.32285027 645.55190640
Axis -0.51850480 0.30268369 -0.79970955
Axis point 109.54084062 321.77108861 0.00000000
Rotation angle (degrees) 151.46756850
Shift along axis -611.51376613
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 60
shifted from previous position = 0.0231
rotated from previous position = 0.0168 degrees
atoms outside contour = 1069, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37358425 0.08740006 0.92346956 439.48368817
-0.67693902 -0.70633108 -0.20700236 438.12886656
0.63418324 -0.70246540 0.32303867 645.55936874
Axis -0.51842324 0.30269212 -0.79975923
Axis point 109.62754666 321.75332990 0.00000000
Rotation angle (degrees) 151.45454979
Shift along axis -611.51246732
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 44
shifted from previous position = 0.0278
rotated from previous position = 0.111 degrees
atoms outside contour = 1068, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37469711 0.08587061 0.92316213 439.49376567
-0.67608004 -0.70666057 -0.20867825 438.12413602
0.63444295 -0.70232262 0.32283908 645.55335358
Axis -0.51816014 0.30305778 -0.79979126
Axis point 109.41080895 321.91551242 0.00000000
Rotation angle (degrees) 151.55314211
Shift along axis -611.25914890
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 60
shifted from previous position = 0.0249
rotated from previous position = 0.0122 degrees
atoms outside contour = 1069, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37482359 0.08578573 0.92311867 439.49494302
-0.67593190 -0.70677369 -0.20877502 438.13414953
0.63452608 -0.70221916 0.32290076 645.57707446
Axis -0.51812861 0.30302940 -0.79982244
Axis point 109.38253909 321.91682935 0.00000000
Rotation angle (degrees) 151.56384401
Shift along axis -611.29440547
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7262, steps = 64
shifted from previous position = 0.0334
rotated from previous position = 0.0613 degrees
atoms outside contour = 1070, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37571750 0.08529035 0.92280112 439.50293573
-0.67556922 -0.70683849 -0.20972740 438.14322666
0.63438363 -0.70221429 0.32319113 645.59911166
Axis -0.51779508 0.30323885 -0.79995904
Axis point 109.40264810 321.97692385 0.00000000
Rotation angle (degrees) 151.60407927
Shift along axis -611.16325072
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 28
shifted from previous position = 0.0131
rotated from previous position = 0.0361 degrees
atoms outside contour = 1070, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37616645 0.08488555 0.92265554 439.50317894
-0.67540384 -0.70681630 -0.21033394 438.13700139
0.63429366 -0.70228567 0.32321261 645.58744129
Axis -0.51764062 0.30341965 -0.79999044
Axis point 109.39487678 322.03203067 0.00000000
Rotation angle (degrees) 151.62850292
Shift along axis -611.02910212
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 28
shifted from previous position = 0.0423
rotated from previous position = 0.0456 degrees
atoms outside contour = 1068, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37617772 0.08424524 0.92270963 439.50549892
-0.67493633 -0.70718471 -0.21059612 438.14081869
0.63478443 -0.70199182 0.32288731 645.57859794
Axis -0.51776738 0.30337725 -0.79992449
Axis point 109.18246284 322.06791638 0.00000000
Rotation angle (degrees) 151.67103390
Shift along axis -611.05378150
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 44
shifted from previous position = 0.0242
rotated from previous position = 0.0223 degrees
atoms outside contour = 1068, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37627142 0.08450485 0.92264768 439.50608706
-0.67514672 -0.70698757 -0.21058366 438.13759074
0.63450511 -0.70215917 0.32307239 645.58313388
Axis -0.51766501 0.30343524 -0.79996874
Axis point 109.29502402 322.05944040 0.00000000
Rotation angle (degrees) 151.65362034
Shift along axis -611.01686814
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7262, steps = 44
shifted from previous position = 0.0243
rotated from previous position = 0.0141 degrees
atoms outside contour = 1070, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37648148 0.08455808 0.92255711 439.50837522
-0.67514505 -0.70694849 -0.21072018 438.14318176
0.63438226 -0.70219212 0.32324199 645.60021482
Axis -0.51755734 0.30347005 -0.80002521
Axis point 109.34519787 322.06050622 0.00000000
Rotation angle (degrees) 151.65370379
Shift along axis -611.00389928
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7262, steps = 28
shifted from previous position = 0.0346
rotated from previous position = 0.0403 degrees
atoms outside contour = 1068, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37654776 0.08389889 0.92259024 439.51268883
-0.67480656 -0.70715557 -0.21110925 438.13995438
0.63470300 -0.70206266 0.32289337 645.59027889
Axis -0.51764026 0.30353599 -0.79994654
Axis point 109.17394542 322.12399469 0.00000000
Rotation angle (degrees) 151.69125474
Shift along axis -610.95592794
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7262, steps = 60
shifted from previous position = 0.0399
rotated from previous position = 0.0599 degrees
atoms outside contour = 1069, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37590896 0.08468688 0.92277873 439.52950152
-0.67530120 -0.70694959 -0.21021552 438.15014301
0.63455555 -0.70217548 0.32293784 645.57486257
Axis -0.51780122 0.30336272 -0.79990809
Axis point 109.30168332 322.04510512 0.00000000
Rotation angle (degrees) 151.63758164
Shift along axis -611.07104869
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 36
shifted from previous position = 0.011
rotated from previous position = 0.0297 degrees
atoms outside contour = 1070, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37635213 0.08460455 0.92260563 439.51264615
-0.67527205 -0.70685121 -0.21063956 438.13390865
0.63432384 -0.70228444 0.32315604 645.58799920
Axis -0.51759735 0.30349933 -0.79998822
Axis point 109.36096401 322.06529149 0.00000000
Rotation angle (degrees) 151.64521582
Shift along axis -610.98002575
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 28
shifted from previous position = 0.0417
rotated from previous position = 0.0501 degrees
atoms outside contour = 1069, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37650108 0.08384333 0.92261435 439.51356465
-0.67477607 -0.70718839 -0.21109674 438.13774943
0.63476310 -0.70203623 0.32283267 645.57353653
Axis -0.51767305 0.30352586 -0.79992917
Axis point 109.15238611 322.12253095 0.00000000
Rotation angle (degrees) 151.69408452
Shift along axis -610.95129002
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 48
shifted from previous position = 0.0477
rotated from previous position = 0.0438 degrees
atoms outside contour = 1071, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37654410 0.08454736 0.92253254 439.50150929
-0.67512536 -0.70695200 -0.21077148 438.13957532
0.63436605 -0.70218987 0.32327867 645.61015813
Axis -0.51753071 0.30347868 -0.80003916
Axis point 109.34501017 322.06198150 0.00000000
Rotation angle (degrees) 151.65548042
Shift along axis -611.00291608
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 40
shifted from previous position = 0.0495
rotated from previous position = 0.0205 degrees
atoms outside contour = 1069, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37632912 0.08428848 0.92264394 439.53029419
-0.67515367 -0.70691589 -0.21080192 438.14069639
0.63446349 -0.70225735 0.32294071 645.56043527
Axis -0.51765750 0.30354487 -0.79993201
Axis point 109.29388785 322.09952078 0.00000000
Rotation angle (degrees) 151.66072236
Shift along axis -610.93524862
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7262, steps = 40
shifted from previous position = 0.0343
rotated from previous position = 0.0116 degrees
atoms outside contour = 1070, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37643947 0.08442413 0.92258652 439.51072764
-0.67510411 -0.70697383 -0.21076634 438.13977705
0.63445076 -0.70218272 0.32312793 645.59332277
Axis -0.51759724 0.30348658 -0.79999312
Axis point 109.30721462 322.07486033 0.00000000
Rotation angle (degrees) 151.65958028
Shift along axis -610.99021489
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 40
shifted from previous position = 0.0252
rotated from previous position = 0.0557 degrees
atoms outside contour = 1069, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37693656 0.08360061 0.92245855 439.51902769
-0.67471852 -0.70708607 -0.21162278 438.13215117
0.63456580 -0.70216823 0.32293347 645.57295793
Axis -0.51749303 0.30370783 -0.79997658
Axis point 109.19439436 322.16866803 0.00000000
Rotation angle (degrees) 151.70812552
Shift along axis -610.82711317
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7262, steps = 60
shifted from previous position = 0.02
rotated from previous position = 0.0728 degrees
atoms outside contour = 1070, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37609604 0.08451830 0.92271796 439.52379943
-0.67519873 -0.70697736 -0.21045114 438.14687742
0.63455373 -0.70216784 0.32295803 645.57147071
Axis -0.51774171 0.30341585 -0.79992646
Axis point 109.28658359 322.06199620 0.00000000
Rotation angle (degrees) 151.64932246
Shift along axis -611.02879975
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 40
shifted from previous position = 0.0425
rotated from previous position = 0.00603 degrees
atoms outside contour = 1069, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37603542 0.08450798 0.92274360 439.50549889
-0.67516178 -0.70703119 -0.21038885 438.13485725
0.63462897 -0.70211487 0.32292533 645.60267721
Axis -0.51777772 0.30337898 -0.79991714
Axis point 109.24256494 322.05939110 0.00000000
Rotation angle (degrees) 151.65088603
Shift along axis -611.07389782
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 48
shifted from previous position = 0.0448
rotated from previous position = 0.0319 degrees
atoms outside contour = 1069, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37635062 0.08472143 0.92259552 439.50681296
-0.67536703 -0.70677310 -0.21059714 438.13085830
0.63422361 -0.70234896 0.32321256 645.57944606
Axis -0.51757252 0.30351362 -0.79999886
Axis point 109.40198077 322.05762179 0.00000000
Rotation angle (degrees) 151.63700616
Shift along axis -610.96078384
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7263, steps = 28
shifted from previous position = 0.0413
rotated from previous position = 0.0534 degrees
atoms outside contour = 1071, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37637191 0.08391796 0.92266026 439.51703741
-0.67485657 -0.70714910 -0.21097099 438.13712554
0.63475412 -0.70206690 0.32278364 645.58022248
Axis -0.51771694 0.30351279 -0.79990572
Axis point 109.15657528 322.12116044 0.00000000
Rotation angle (degrees) 151.68686951
Shift along axis -610.96850626
> fitmap #7 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#7) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7262, steps = 44
shifted from previous position = 0.0465
rotated from previous position = 0.0367 degrees
atoms outside contour = 1070, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#7) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.37683745 0.08421414 0.92244323 439.51569193
-0.67495269 -0.70699266 -0.21118770 438.14487151
0.63437560 -0.70218897 0.32326187 645.59905723
Axis -0.51744596 0.30358257 -0.80005456
Axis point 109.32261882 322.10100326 0.00000000
Rotation angle (degrees) 151.67665557
Shift along axis -610.92694165
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7136, steps = 88
shifted from previous position = 3.65
rotated from previous position = 3.43 degrees
atoms outside contour = 1100, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.77226889 -0.55271861 0.31321380 460.29135563
-0.01663248 -0.47526095 -0.87968766 449.80096976
0.63507804 -0.68456494 0.35783617 675.67161392
Axis 0.29788590 -0.49137699 0.81842083
Axis point 37.19194900 460.71551831 0.00000000
Rotation angle (degrees) 160.88213485
Shift along axis 469.07617761
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7146, steps = 48
shifted from previous position = 0.0373
rotated from previous position = 1.62 degrees
atoms outside contour = 1101, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.77114317 -0.53942515 0.33816965 460.17850343
-0.03920526 -0.48991857 -0.87088618 449.94637790
0.63545350 -0.68483596 0.35664906 675.65172458
Axis 0.30454551 -0.48662380 0.81880969
Axis point 39.39108733 455.90848652 0.00000000
Rotation angle (degrees) 162.21442855
Shift along axis 474.42086301
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7161, steps = 44
shifted from previous position = 0.0456
rotated from previous position = 1.73 degrees
atoms outside contour = 1100, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76957097 -0.52444726 0.36430151 460.09148894
-0.06331071 -0.50502804 -0.86077780 450.09369530
0.63541504 -0.68549380 0.35545179 675.64707120
Axis 0.31138596 -0.48162378 0.81919309
Axis point 41.91058098 450.89390877 0.00000000
Rotation angle (degrees) 163.65277059
Shift along axis 479.97561389
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7165, steps = 36
shifted from previous position = 0.00926
rotated from previous position = 0.554 degrees
atoms outside contour = 1099, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76886752 -0.51960715 0.37262736 460.06226012
-0.07105749 -0.50972418 -0.85739844 450.13521976
0.63544754 -0.68570378 0.35498839 675.64967168
Axis 0.31360068 -0.48004161 0.81927692
Axis point 42.69257746 449.32386351 0.00000000
Rotation angle (degrees) 164.11262553
Shift along axis 481.73637829
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7167, steps = 44
shifted from previous position = 0.0343
rotated from previous position = 0.511 degrees
atoms outside contour = 1097, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76810278 -0.51516083 0.38029915 460.00087030
-0.07817020 -0.51403237 -0.85420146 450.17156049
0.63553720 -0.68584258 0.35455947 675.63907527
Axis 0.31566872 -0.47856501 0.81934656
Axis point 43.37613790 447.87496212 0.00000000
Rotation angle (degrees) 164.53377980
Shift along axis 483.35408176
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7175, steps = 40
shifted from previous position = 0.0482
rotated from previous position = 1 degrees
atoms outside contour = 1101, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76665417 -0.50609119 0.39511148 459.95505686
-0.09209644 -0.52233701 -0.84775132 450.23901389
0.63542083 -0.68632045 0.35384265 675.61859362
Axis 0.31955537 -0.47569675 0.81951020
Axis point 44.86395542 445.05536651 0.00000000
Rotation angle (degrees) 165.36936733
Shift along axis 486.48020164
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7176, steps = 40
shifted from previous position = 0.00766
rotated from previous position = 0.203 degrees
atoms outside contour = 1103, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76627981 -0.50428889 0.39813059 459.94058902
-0.09488015 -0.52404313 -0.84639031 450.25842315
0.63546282 -0.68634650 0.35371666 675.61148155
Axis 0.32037216 -0.47508642 0.81954534
Axis point 45.14000331 444.47996359 0.00000000
Rotation angle (degrees) 165.53562648
Shift along axis 487.13473879
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7176, steps = 44
shifted from previous position = 0.0204
rotated from previous position = 0.331 degrees
atoms outside contour = 1105, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76552789 -0.50146790 0.40310916 459.91460176
-0.09935080 -0.52688066 -0.84411266 450.29809163
0.63568583 -0.68624100 0.35352060 675.60336789
Axis 0.32177621 -0.47404098 0.81960065
Axis point 45.53114637 443.53650556 0.00000000
Rotation angle (degrees) 165.79967857
Shift along axis 488.25478374
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 44
shifted from previous position = 0.0405
rotated from previous position = 0.533 degrees
atoms outside contour = 1103, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76472386 -0.49637814 0.41086027 459.89390695
-0.10661908 -0.53136188 -0.84040878 450.35247458
0.63547604 -0.68648619 0.35342173 675.61065507
Axis 0.32373812 -0.47242373 0.81976182
Axis point 46.39144263 442.01092781 0.00000000
Rotation angle (degrees) 166.24757420
Shift along axis 489.96781217
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7176, steps = 44
shifted from previous position = 0.0288
rotated from previous position = 0.113 degrees
atoms outside contour = 1102, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76426131 -0.49562608 0.41262506 459.88334703
-0.10807133 -0.53234699 -0.83959947 450.37313068
0.63578710 -0.68626633 0.35328924 675.60471505
Axis 0.32432958 -0.47203135 0.81975407
Axis point 46.43118025 441.69906841 0.00000000
Rotation angle (degrees) 166.32673577
Shift along axis 490.39325047
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7176, steps = 48
shifted from previous position = 0.00866
rotated from previous position = 0.257 degrees
atoms outside contour = 1105, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76392212 -0.49307031 0.41629876 459.83872741
-0.11156142 -0.53449156 -0.83777851 450.39736288
0.63559188 -0.68644042 0.35330230 675.60401142
Axis 0.32522016 -0.47125309 0.81984899
Axis point 46.86770808 440.95647367 0.00000000
Rotation angle (degrees) 166.54567016
Shift along axis 491.19094243
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7176, steps = 40
shifted from previous position = 0.0393
rotated from previous position = 0.229 degrees
atoms outside contour = 1107, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76317441 -0.49127281 0.41978070 459.89003146
-0.11467586 -0.53634427 -0.83617239 450.42437920
0.63593574 -0.68628409 0.35298709 675.59483136
Axis 0.32629568 -0.47055341 0.81982353
Axis point 47.08994041 440.34865989 0.00000000
Rotation angle (degrees) 166.72166601
Shift along axis 491.97993891
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7176, steps = 44
shifted from previous position = 0.00295
rotated from previous position = 0.0143 degrees
atoms outside contour = 1108, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76318813 -0.49142203 0.41958107 459.89563237
-0.11448338 -0.53622517 -0.83627515 450.42319505
0.63595396 -0.68627032 0.35298103 675.59534310
Axis 0.32625057 -0.47059673 0.81981662
Axis point 47.06411492 440.39082142 0.00000000
Rotation angle (degrees) 166.70928379
Shift along axis 491.93782034
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7176, steps = 40
shifted from previous position = 0.0358
rotated from previous position = 0.022 degrees
atoms outside contour = 1105, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76327742 -0.49156752 0.41924808 459.85667107
-0.11415010 -0.53610257 -0.83639930 450.42291073
0.63590670 -0.68626191 0.35308250 675.59471718
Axis 0.32613442 -0.47063449 0.81984115
Axis point 47.03727832 440.42957651 0.00000000
Rotation angle (degrees) 166.69249780
Shift along axis 491.87088551
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 40
shifted from previous position = 0.0115
rotated from previous position = 0.247 degrees
atoms outside contour = 1108, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76285548 -0.48917178 0.42280312 459.83246000
-0.11755760 -0.53808265 -0.83465398 450.44059795
0.63579220 -0.68642409 0.35297344 675.58690031
Axis 0.32703943 -0.46991754 0.81989190
Axis point 47.43298710 439.73972011 0.00000000
Rotation angle (degrees) 166.90161311
Shift along axis 492.62163393
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 36
shifted from previous position = 0.032
rotated from previous position = 0.253 degrees
atoms outside contour = 1108, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76230914 -0.48681697 0.42649033 459.84489337
-0.12101782 -0.54012825 -0.83283621 450.46795547
0.63579828 -0.68649159 0.35283117 675.59014771
Axis 0.32802837 -0.46915933 0.81993104
Axis point 47.80613285 439.04377766 0.00000000
Rotation angle (degrees) 167.11076195
Shift along axis 493.43825580
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 40
shifted from previous position = 0.0304
rotated from previous position = 0.107 degrees
atoms outside contour = 1106, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76241057 -0.48795088 0.42501066 459.83664967
-0.11950910 -0.53932350 -0.83357527 450.46269243
0.63596202 -0.68631924 0.35287136 675.58703289
Axis 0.32769378 -0.46943714 0.81990583
Axis point 47.58573187 439.33177782 0.00000000
Rotation angle (degrees) 167.01561938
Shift along axis 493.13943760
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 36
shifted from previous position = 0.0276
rotated from previous position = 0.35 degrees
atoms outside contour = 1107, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76176538 -0.48454859 0.43003043 459.82292361
-0.12434495 -0.54208296 -0.83107424 450.49112485
0.63580802 -0.68655570 0.35268886 675.58266739
Axis 0.32898126 -0.46843103 0.81996567
Axis point 48.14894135 438.37096292 0.00000000
Rotation angle (degrees) 167.31178424
Shift along axis 494.20369910
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 40
shifted from previous position = 0.00536
rotated from previous position = 0.15 degrees
atoms outside contour = 1109, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76188515 -0.48616891 0.42798458 459.86084910
-0.12226741 -0.54093398 -0.83213046 450.48350992
0.63606737 -0.68631641 0.35268695 675.58254771
Axis 0.32853631 -0.46883512 0.81991312
Axis point 47.84964196 438.78756184 0.00000000
Rotation angle (degrees) 167.17848418
Shift along axis 493.79748773
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 40
shifted from previous position = 0.0082
rotated from previous position = 0.1 degrees
atoms outside contour = 1106, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76235507 -0.48680164 0.42642574 459.84383477
-0.12100978 -0.54007003 -0.83287514 450.46062496
0.63574474 -0.68654827 0.35281736 675.58084112
Axis 0.32799344 -0.46919107 0.81992685
Axis point 47.82228654 439.05327176 0.00000000
Rotation angle (degrees) 167.11095650
Shift along axis 493.40052788
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 40
shifted from previous position = 0.0344
rotated from previous position = 0.0973 degrees
atoms outside contour = 1107, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76233936 -0.48792146 0.42517214 459.84186253
-0.11960403 -0.53942941 -0.83349312 450.46600015
0.63602954 -0.68625692 0.35287090 675.58698327
Axis 0.32776093 -0.46938739 0.81990746
Axis point 47.57723199 439.30211152 0.00000000
Rotation angle (degrees) 167.02010456
Shift along axis 493.19394383
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 28
shifted from previous position = 0.0364
rotated from previous position = 0.36 degrees
atoms outside contour = 1108, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76166458 -0.48442724 0.43034558 459.83608316
-0.12458367 -0.54226986 -0.83091655 450.49516269
0.63588205 -0.68649373 0.35267602 675.57924011
Axis 0.32909272 -0.46835091 0.81996671
Axis point 48.15758040 438.31325999 0.00000000
Rotation angle (degrees) 167.32469487
Shift along axis 494.29137772
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 28
shifted from previous position = 0.0307
rotated from previous position = 0.083 degrees
atoms outside contour = 1106, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76170050 -0.48535140 0.42923929 459.82813353
-0.12340645 -0.54167817 -0.83147797 450.49396845
0.63606855 -0.68630808 0.35270104 675.58333092
Axis 0.32886585 -0.46854813 0.81994506
Axis point 47.96368802 438.53347657 0.00000000
Rotation angle (degrees) 167.24908966
Shift along axis 494.08487849
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 40
shifted from previous position = 0.0242
rotated from previous position = 0.266 degrees
atoms outside contour = 1106, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76124427 -0.48270115 0.43302050 459.81278787
-0.12709204 -0.54375423 -0.82956552 450.51405373
0.63588896 -0.68653546 0.35258232 675.57373404
Axis 0.32981192 -0.46779282 0.81999633
Axis point 48.41487070 437.80200782 0.00000000
Rotation angle (degrees) 167.47674816
Shift along axis 494.87247750
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 40
shifted from previous position = 0.0236
rotated from previous position = 0.137 degrees
atoms outside contour = 1107, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76134949 -0.48419426 0.43116456 459.82288479
-0.12516447 -0.54274814 -0.83051689 450.50814674
0.63614527 -0.68628009 0.35261710 675.57837169
Axis 0.32941102 -0.46813927 0.81995976
Axis point 48.12419186 438.17109980 0.00000000
Rotation angle (degrees) 167.35372647
Shift along axis 494.51725004
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 40
shifted from previous position = 0.0283
rotated from previous position = 0.183 degrees
atoms outside contour = 1108, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76114446 -0.48225849 0.43368867 459.81324294
-0.12772451 -0.54412483 -0.82922531 450.51924679
0.63588172 -0.68655292 0.35256137 675.57354156
Axis 0.32998816 -0.46765400 0.82000461
Axis point 48.48580024 437.67454685 0.00000000
Rotation angle (degrees) 167.51535061
Shift along axis 495.01921429
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 36
shifted from previous position = 0.00624
rotated from previous position = 0.114 degrees
atoms outside contour = 1105, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76144670 -0.48328758 0.43200930 459.81228535
-0.12620401 -0.54316859 -0.83008459 450.50260818
0.63582345 -0.68658648 0.35260110 675.57156993
Axis 0.32951905 -0.46802462 0.81998180
Axis point 48.33859784 437.99471740 0.00000000
Rotation angle (degrees) 167.42374858
Shift along axis 494.62699024
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 40
shifted from previous position = 0.0129
rotated from previous position = 0.164 degrees
atoms outside contour = 1107, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76179509 -0.48484716 0.42964109 459.83061878
-0.12394172 -0.54187896 -0.83126749 450.49006470
0.63585115 -0.68650595 0.35270795 675.58320708
Axis 0.32889205 -0.46850047 0.81996178
Axis point 48.09601230 438.44566575 0.00000000
Rotation angle (degrees) 167.28658848
Shift along axis 494.13223953
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 40
shifted from previous position = 0.0261
rotated from previous position = 0.11 degrees
atoms outside contour = 1106, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76186421 -0.48605559 0.42815054 459.83166831
-0.12237853 -0.54107828 -0.83202031 450.48691033
0.63607108 -0.68628293 0.35274541 675.58269431
Axis 0.32857475 -0.46877087 0.81993445
Axis point 47.85506151 438.73941485 0.00000000
Rotation angle (degrees) 167.18686566
Shift along axis 493.84745713
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 36
shifted from previous position = 0.0234
rotated from previous position = 0.215 degrees
atoms outside contour = 1106, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76157564 -0.48384348 0.43115894 459.81690803
-0.12538821 -0.54271219 -0.83050664 450.49913265
0.63583043 -0.68655587 0.35264811 675.57890639
Axis 0.32929178 -0.46819230 0.81997738
Axis point 48.25157384 438.15567223 0.00000000
Rotation angle (degrees) 167.37457328
Shift along axis 494.45312300
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 40
shifted from previous position = 0.0223
rotated from previous position = 0.143 degrees
atoms outside contour = 1106, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76168507 -0.48539710 0.42921499 459.82907911
-0.12336586 -0.54166567 -0.83149213 450.49426089
0.63609490 -0.68628562 0.35269722 675.58244000
Axis 0.32886945 -0.46854980 0.81994266
Axis point 47.95079132 438.53966327 0.00000000
Rotation angle (degrees) 167.24596078
Shift along axis 494.08360677
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 36
shifted from previous position = 0.0245
rotated from previous position = 0.215 degrees
atoms outside contour = 1108, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76141617 -0.48316466 0.43220057 459.81214131
-0.12636825 -0.54329070 -0.82997969 450.50606037
0.63582740 -0.68657638 0.35261365 675.57619880
Axis 0.32956954 -0.46797528 0.81998967
Axis point 48.35648786 437.95591565 0.00000000
Rotation angle (degrees) 167.43414997
Shift along axis 494.67987981
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 40
shifted from previous position = 0.0202
rotated from previous position = 0.144 degrees
atoms outside contour = 1106, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76153133 -0.48472219 0.43024926 459.82604966
-0.12434655 -0.54223391 -0.83097552 450.50028225
0.63608801 -0.68631391 0.35265458 675.57894397
Axis 0.32914453 -0.46833917 0.81995262
Axis point 48.05694999 438.34269712 0.00000000
Rotation angle (degrees) 167.30541894
Shift along axis 494.30502654
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 40
shifted from previous position = 0.0182
rotated from previous position = 0.226 degrees
atoms outside contour = 1107, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76118798 -0.48242838 0.43342326 459.80805913
-0.12746820 -0.54398672 -0.82935535 450.51737748
0.63588106 -0.68654301 0.35258187 675.57695608
Axis 0.32991547 -0.46770439 0.82000511
Axis point 48.45673623 437.72278806 0.00000000
Rotation angle (degrees) 167.50010738
Shift along axis 494.96539672
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 44
shifted from previous position = 0.00993
rotated from previous position = 0.184 degrees
atoms outside contour = 1107, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76167291 -0.48409013 0.43071002 459.82500258
-0.12499288 -0.54246121 -0.83073017 450.49589300
0.63579175 -0.68658036 0.35267019 675.58041523
Axis 0.32915677 -0.46829085 0.81997530
Axis point 48.22608282 438.23978570 0.00000000
Rotation angle (degrees) 167.35155478
Shift along axis 494.35066016
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 28
shifted from previous position = 0.00918
rotated from previous position = 0.0779 degrees
atoms outside contour = 1109, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76189925 -0.48476330 0.42955101 459.83316618
-0.12395275 -0.54181167 -0.83130971 450.48687972
0.63572419 -0.68661827 0.35271816 675.58607551
Axis 0.32882103 -0.46854244 0.81996628
Axis point 48.13991429 438.45899197 0.00000000
Rotation angle (degrees) 167.29005780
Shift along axis 494.08839733
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 28
shifted from previous position = 0.0382
rotated from previous position = 0.0838 degrees
atoms outside contour = 1106, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76174555 -0.48583851 0.42860782 459.83613338
-0.12275649 -0.54134070 -0.83179390 450.49257409
0.63614036 -0.68622969 0.35272405 675.58578431
Axis 0.32872287 -0.46866394 0.81993621
Axis point 47.87390949 438.65702117 0.00000000
Rotation angle (degrees) 167.20821378
Shift along axis 493.96627920
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 44
shifted from previous position = 0.0294
rotated from previous position = 0.118 degrees
atoms outside contour = 1108, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76168271 -0.48454060 0.43018584 459.83427396
-0.12442618 -0.54218316 -0.83099672 450.49465965
0.63589117 -0.68648221 0.35268200 675.58032136
Axis 0.32905321 -0.46838203 0.81996479
Axis point 48.13659996 438.34415221 0.00000000
Rotation angle (degrees) 167.31496522
Shift along axis 494.25841448
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 28
shifted from previous position = 0.0113
rotated from previous position = 0.123 degrees
atoms outside contour = 1104, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76210636 -0.48551790 0.42832961 459.81815940
-0.12290259 -0.54104923 -0.83196194 450.46748149
0.63567983 -0.68668631 0.35266566 675.57675457
Axis 0.32848881 -0.46884825 0.81992465
Axis point 48.02326610 438.70547996 0.00000000
Rotation angle (degrees) 167.22475150
Shift along axis 493.76626225
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 40
shifted from previous position = 0.0326
rotated from previous position = 0.177 degrees
atoms outside contour = 1108, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76243958 -0.48722474 0.42579096 459.80994759
-0.12034547 -0.53978183 -0.83315817 450.46099695
0.63576950 -0.68647478 0.35291574 675.59109524
Axis 0.32782410 -0.46928303 0.81994195
Axis point 47.73449845 439.15852406 0.00000000
Rotation angle (degrees) 167.07221970
Shift along axis 493.28855950
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 36
shifted from previous position = 0.0356
rotated from previous position = 0.0322 degrees
atoms outside contour = 1108, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76234377 -0.48695509 0.42627071 459.84549588
-0.12081201 -0.54000765 -0.83294429 450.46621594
0.63579591 -0.68648851 0.35284144 675.59062342
Axis 0.32796849 -0.46920416 0.81992934
Axis point 47.78535240 439.08494972 0.00000000
Rotation angle (degrees) 167.09840727
Shift along axis 493.39078202
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 40
shifted from previous position = 0.029
rotated from previous position = 0.0945 degrees
atoms outside contour = 1107, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76237695 -0.48800407 0.42500989 459.84164745
-0.11946583 -0.53933702 -0.83357273 450.46489088
0.63601045 -0.68627079 0.35287830 675.58828279
Axis 0.32771043 -0.46942416 0.81990660
Axis point 47.56840266 439.33264656 0.00000000
Rotation angle (degrees) 167.01217285
Shift along axis 493.15509720
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 44
shifted from previous position = 0.00326
rotated from previous position = 0.18 degrees
atoms outside contour = 1105, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76188961 -0.48642547 0.42768503 459.83823688
-0.12190979 -0.54081141 -0.83226259 450.48423067
0.63613066 -0.68623121 0.35273857 675.58409446
Axis 0.32847453 -0.46886555 0.81992047
Axis point 47.78497680 438.83562613 0.00000000
Rotation angle (degrees) 167.15659215
Shift along axis 493.75383711
> fitmap #8 inMap #1
Fit molecule copy of robetta_models_493047_1.2.pdb (#8) to map
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) using 1508 atoms
average map value = 0.7177, steps = 36
shifted from previous position = 0.0237
rotated from previous position = 0.147 degrees
atoms outside contour = 1107, contour level = 0.95811
Position of copy of robetta_models_493047_1.2.pdb (#8) relative to
cryosparc_P71_J484_005_volume_map_half_A.mrc (#1) coordinates:
Matrix rotation and translation
-0.76181314 -0.48480145 0.42966067 459.82323462
-0.12397909 -0.54188935 -0.83125515 450.48942615
0.63582224 -0.68653003 0.35271319 675.58070201
Axis 0.32888612 -0.46849975 0.81996458
Axis point 48.10719439 438.43857507 0.00000000
Rotation angle (degrees) 167.28960763
Shift along axis 494.12753879
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> fitmap #9 inMap #1
No atoms or maps for #9
> hide #!1 models
> hbonds reveal true
807 hydrogen bonds found
> isolde start
> set selectionWidth 4
Populating font family aliases took 234 ms. Replace uses of missing font
family "Carlito" with one that exists to avoid this cost.
> isolde tutorial
ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
chains...
ISOLDE: Corrected atom nomenclature of 5 residues in model #4 to IUPAC-IUB
standards.
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 71.7.1
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Chip: Apple M1
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 6723.140.2
OS Loader Version: 6723.140.2
Software:
System Software Overview:
System Version: macOS 11.6 (20G165)
Kernel Version: Darwin 20.6.0
Time since boot: 65 days 1:52
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
Color LCD:
Resolution: 2880 x 1800
UI Looks like: 1440 x 900 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.1.0
Babel: 2.11.0
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.4
ChimeraX-AddH: 2.2.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.6
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-ArtiaX: 0.3
ChimeraX-Atomic: 1.41.5
ChimeraX-AtomicLibrary: 8.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.19.0
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.4
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.5
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.5
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.1
ChimeraX-PDB: 2.6.8
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.7.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.24.3
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.4
decorator: 5.1.1
docutils: 0.19
entrypoints: 0.4
executing: 1.2.0
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.1
geomdl: 5.3.1
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.7.31
imagesize: 1.4.1
importlib-metadata: 5.1.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 5.1.0
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.4
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
pandas: 1.5.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
platformdirs: 2.5.4
prompt-toolkit: 3.0.33
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.6
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
setuptools: 65.1.1
setuptools-scm: 7.0.5
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
starfile: 0.4.11
superqt: 0.4.1
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
typing-extensions: 4.4.0
urllib3: 1.26.13
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.11.0
Change History (2)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Structure Editing |
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash clearing aniso_u6 |
comment:2 by , 3 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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