![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#8590 closed defect (nonchimerax)
Graphics crash, macOS 11.6, Intel Iris Plus Graphics
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x0000000115f3be00 (most recent call first):
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 2730 in draw_elements
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1736 in draw
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 836 in _draw_geometry
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 771 in draw_self
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 764 in draw
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1551 in _draw_multiple
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1538 in draw_opaque
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 247 in _draw_scene
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 177 in draw
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/sideview/tool.py", line 288 in render
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/sideview/tool.py", line 113 in _redraw
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 134 in invoke
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 217 in _activate
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 186 in activate
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 354 in activate_trigger
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 89 in draw_new_frame
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 283 in event_loop
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 884 in init
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1035 in
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/private/var/folders/fp/_bf7ns397ql0tgwz999m7nh40000gn/T/AppTranslocation/7BB7B0E0-2C3F-489F-99D4-89DF8FA5B625/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [6150]
Path: /Volumes/VOLUME/*/ChimeraX-1.5.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: ???
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [6150]
User ID: 501
Date/Time: 2023-03-02 03:08:45.933 -0800
OS Version: macOS 11.6 (20G165)
Report Version: 12
Bridge OS Version: 5.5 (18P4759a)
Anonymous UUID: 02D75760-462D-8882-76B6-97C90F018AA1
Sleep/Wake UUID: 4EFF7C16-CED0-4585-84BF-67571ACF3E8C
Time Awake Since Boot: 750000 seconds
Time Since Wake: 7700 seconds
System Integrity Protection: enabled
Notes: Translocated Process
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00000813
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff2040a92e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff204395bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff2031dbd5 raise + 26
3 libsystem_platform.dylib 0x00007fff2047ed7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff2038e406 abort + 125
6 libGPUSupportMercury.dylib 0x00007fff46387096 gpusGenerateCrashLog.cold.1 + 95
7 libGPUSupportMercury.dylib 0x00007fff4637e21c gpusGenerateCrashLog + 89
8 com.apple.driver.AppleIntelICLGraphicsGLDriver 0x00007fff64c0a599 gpusKillClientExt + 9
9 libGPUSupportMercury.dylib 0x00007fff4637f72d gpusSubmitDataBuffers + 490
10 com.apple.driver.AppleIntelICLGraphicsGLDriver 0x00007fff63e9db18 IntelCommandBuffer::getNew(GLDContextRec*) + 48
11 com.apple.driver.AppleIntelICLGraphicsGLDriver 0x00007fff63e9d90e intelSubmitCommands + 171
12 com.apple.driver.AppleIntelICLGraphicsGLDriver 0x00007fff63e91247 updateDispatch + 6248
13 GLEngine 0x00007fff6be2c2e6 gleDoDrawDispatchCoreGL3 + 674
14 GLEngine 0x00007fff6bdff318 glDrawElementsInstanced_ACC_GL3Exec + 290
15 libffi.dylib 0x00007fff2da198f5 ffi_call_unix64 + 85
16 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
17 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
18 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
19 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
20 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
21 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
22 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
23 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
24 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
25 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
26 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
27 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
28 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
29 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
30 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
31 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
32 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
33 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
34 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
35 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
36 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
37 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
38 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
39 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
40 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
41 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
42 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
43 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
44 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
45 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
46 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
47 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
48 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
49 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
50 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
51 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
52 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
53 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
54 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
55 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
56 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
57 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
58 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
59 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
60 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
61 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
62 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
63 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
64 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
65 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
66 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
67 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
68 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
69 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
70 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
71 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
72 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
73 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
74 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
75 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
76 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
77 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
78 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
79 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
80 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
81 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
82 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
83 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
84 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
85 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
86 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
87 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
88 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
89 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
90 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
91 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
92 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
93 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
94 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
95 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
96 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
97 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
98 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
99 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
100 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
101 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
102 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
103 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
104 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
105 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
106 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
107 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
108 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
109 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
110 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
111 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
112 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
113 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
114 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
115 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
116 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
117 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
118 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
119 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
120 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
121 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
122 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
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125 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
126 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
127 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
128 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
129 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
130 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
131 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
132 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
133 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
134 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
135 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
136 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
137 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
138 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
139 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
140 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
141 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
142 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
143 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
144 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
145 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
146 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
147 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
148 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
149 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
150 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
151 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
152 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
153 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
154 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
155 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
156 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
157 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
158 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
159 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
160 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
161 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
162 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
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445 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
446 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
447 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
448 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
449 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
450 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
451 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
452 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
453 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
454 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
455 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
456 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
457 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
458 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
459 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
460 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
461 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
462 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
463 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
464 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
465 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
466 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
467 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
468 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
469 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
470 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
471 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
472 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
473 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
474 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
475 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
476 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
477 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
478 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
479 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
480 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
481 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
482 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
483 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
484 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
485 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
486 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
487 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
488 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
489 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
490 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
491 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
492 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
493 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
494 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
495 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
496 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
497 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
498 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
499 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
500 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
501 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
502 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
503 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
504 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
505 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
506 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
507 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
508 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
509 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
510 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
511 libffi.dylib 0x00007fff2da1922d ffi_call_int + 699
Thread 1:
0 libsystem_kernel.dylib 0x00007fff20406cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20439e49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010ae8d23f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff20406cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20439e49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010ae8d23f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff20406cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20439e49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010ae8d23f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 4:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff2040d1d2 kevent64 + 10
1 QtWebEngineCore 0x000000011f755a2a 0x11b7f5000 + 66456106
2 QtWebEngineCore 0x000000011f755927 0x11b7f5000 + 66455847
3 QtWebEngineCore 0x000000011f6d2a5c 0x11b7f5000 + 65919580
4 QtWebEngineCore 0x000000011f68a998 0x11b7f5000 + 65624472
5 QtWebEngineCore 0x000000011f6f4eb8 0x11b7f5000 + 66059960
6 QtWebEngineCore 0x000000011f6dc2ad 0x11b7f5000 + 65958573
7 QtWebEngineCore 0x000000011f6f504a 0x11b7f5000 + 66060362
8 QtWebEngineCore 0x000000011f71c908 0x11b7f5000 + 66222344
9 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 5:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff2040d1d2 kevent64 + 10
1 QtWebEngineCore 0x000000011f755a2a 0x11b7f5000 + 66456106
2 QtWebEngineCore 0x000000011f755927 0x11b7f5000 + 66455847
3 QtWebEngineCore 0x000000011f6d2a5c 0x11b7f5000 + 65919580
4 QtWebEngineCore 0x000000011f68a998 0x11b7f5000 + 65624472
5 QtWebEngineCore 0x000000011f6f4eb8 0x11b7f5000 + 66059960
6 QtWebEngineCore 0x000000011e61a3a2 0x11b7f5000 + 48386978
7 QtWebEngineCore 0x000000011f6f504a 0x11b7f5000 + 66060362
8 QtWebEngineCore 0x000000011f71c908 0x11b7f5000 + 66222344
9 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 6:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204042ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2040462c mach_msg + 60
2 QtWebEngineCore 0x000000011f723e26 0x11b7f5000 + 66252326
3 QtWebEngineCore 0x000000011f723bef 0x11b7f5000 + 66251759
4 QtWebEngineCore 0x000000011f6591c9 0x11b7f5000 + 65421769
5 QtWebEngineCore 0x000000011f6d2a5c 0x11b7f5000 + 65919580
6 QtWebEngineCore 0x000000011f68a998 0x11b7f5000 + 65624472
7 QtWebEngineCore 0x000000011f6f4eb8 0x11b7f5000 + 66059960
8 QtWebEngineCore 0x000000011f6f504a 0x11b7f5000 + 66060362
9 QtWebEngineCore 0x000000011f71c908 0x11b7f5000 + 66222344
10 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 7:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff20406cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20439e49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x000000011f71bd1b 0x11b7f5000 + 66219291
3 QtWebEngineCore 0x00000001217e992d 0x11b7f5000 + 100616493
4 QtWebEngineCore 0x000000011f71c908 0x11b7f5000 + 66222344
5 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 8:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff204042ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2040462c mach_msg + 60
2 QtWebEngineCore 0x000000011f723e26 0x11b7f5000 + 66252326
3 QtWebEngineCore 0x000000011f723bef 0x11b7f5000 + 66251759
4 QtWebEngineCore 0x000000011f6591c9 0x11b7f5000 + 65421769
5 QtWebEngineCore 0x000000011f6d2a5c 0x11b7f5000 + 65919580
6 QtWebEngineCore 0x000000011f68a998 0x11b7f5000 + 65624472
7 QtWebEngineCore 0x000000011f6f4eb8 0x11b7f5000 + 66059960
8 QtWebEngineCore 0x000000011f6f504a 0x11b7f5000 + 66060362
9 QtWebEngineCore 0x000000011f71c908 0x11b7f5000 + 66222344
10 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 9:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff2040d1d2 kevent64 + 10
1 QtWebEngineCore 0x000000011f755a2a 0x11b7f5000 + 66456106
2 QtWebEngineCore 0x000000011f755927 0x11b7f5000 + 66455847
3 QtWebEngineCore 0x000000011f6d2a5c 0x11b7f5000 + 65919580
4 QtWebEngineCore 0x000000011f68a998 0x11b7f5000 + 65624472
5 QtWebEngineCore 0x000000011f6f4eb8 0x11b7f5000 + 66059960
6 QtWebEngineCore 0x000000011f6f504a 0x11b7f5000 + 66060362
7 QtWebEngineCore 0x000000011f71c908 0x11b7f5000 + 66222344
8 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 10:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff204042ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2040462c mach_msg + 60
2 QtWebEngineCore 0x000000011f723e26 0x11b7f5000 + 66252326
3 QtWebEngineCore 0x000000011f723bef 0x11b7f5000 + 66251759
4 QtWebEngineCore 0x000000011f6591c9 0x11b7f5000 + 65421769
5 QtWebEngineCore 0x000000011f6d2a5c 0x11b7f5000 + 65919580
6 QtWebEngineCore 0x000000011f68a998 0x11b7f5000 + 65624472
7 QtWebEngineCore 0x000000011f6f4eb8 0x11b7f5000 + 66059960
8 QtWebEngineCore 0x000000011f6f504a 0x11b7f5000 + 66060362
9 QtWebEngineCore 0x000000011f71c908 0x11b7f5000 + 66222344
10 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 11:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204042ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2040462c mach_msg + 60
2 QtWebEngineCore 0x000000011f723e26 0x11b7f5000 + 66252326
3 QtWebEngineCore 0x000000011f723bef 0x11b7f5000 + 66251759
4 QtWebEngineCore 0x000000011f6591c9 0x11b7f5000 + 65421769
5 QtWebEngineCore 0x000000011f6d2a5c 0x11b7f5000 + 65919580
6 QtWebEngineCore 0x000000011f68a998 0x11b7f5000 + 65624472
7 QtWebEngineCore 0x000000011f6f4eb8 0x11b7f5000 + 66059960
8 QtWebEngineCore 0x000000011f6f504a 0x11b7f5000 + 66060362
9 QtWebEngineCore 0x000000011f71c908 0x11b7f5000 + 66222344
10 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 12:: NetworkService
0 libsystem_kernel.dylib 0x00007fff2040d1d2 kevent64 + 10
1 QtWebEngineCore 0x000000011f755a2a 0x11b7f5000 + 66456106
2 QtWebEngineCore 0x000000011f755927 0x11b7f5000 + 66455847
3 QtWebEngineCore 0x000000011f6d2a5c 0x11b7f5000 + 65919580
4 QtWebEngineCore 0x000000011f68a998 0x11b7f5000 + 65624472
5 QtWebEngineCore 0x000000011f6f4eb8 0x11b7f5000 + 66059960
6 QtWebEngineCore 0x000000011f6f504a 0x11b7f5000 + 66060362
7 QtWebEngineCore 0x000000011f71c908 0x11b7f5000 + 66222344
8 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204042ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2040462c mach_msg + 60
2 QtWebEngineCore 0x000000011f723e26 0x11b7f5000 + 66252326
3 QtWebEngineCore 0x000000011f723bef 0x11b7f5000 + 66251759
4 QtWebEngineCore 0x000000011f6591c9 0x11b7f5000 + 65421769
5 QtWebEngineCore 0x000000011f6d2a5c 0x11b7f5000 + 65919580
6 QtWebEngineCore 0x000000011f68a998 0x11b7f5000 + 65624472
7 QtWebEngineCore 0x000000011f6f4eb8 0x11b7f5000 + 66059960
8 QtWebEngineCore 0x000000011f6f504a 0x11b7f5000 + 66060362
9 QtWebEngineCore 0x000000011f71c908 0x11b7f5000 + 66222344
10 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 14:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff204042ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2040462c mach_msg + 60
2 QtWebEngineCore 0x000000011f723e26 0x11b7f5000 + 66252326
3 QtWebEngineCore 0x000000011f6e87bf 0x11b7f5000 + 66009023
4 QtWebEngineCore 0x000000011f6e926c 0x11b7f5000 + 66011756
5 QtWebEngineCore 0x000000011f6e8ecd 0x11b7f5000 + 66010829
6 QtWebEngineCore 0x000000011f71c908 0x11b7f5000 + 66222344
7 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 15:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204042ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2040462c mach_msg + 60
2 QtWebEngineCore 0x000000011f723e26 0x11b7f5000 + 66252326
3 QtWebEngineCore 0x000000011f723bef 0x11b7f5000 + 66251759
4 QtWebEngineCore 0x000000011f6591c9 0x11b7f5000 + 65421769
5 QtWebEngineCore 0x000000011f6d2a5c 0x11b7f5000 + 65919580
6 QtWebEngineCore 0x000000011f68a998 0x11b7f5000 + 65624472
7 QtWebEngineCore 0x000000011f6f4eb8 0x11b7f5000 + 66059960
8 QtWebEngineCore 0x000000011f6f504a 0x11b7f5000 + 66060362
9 QtWebEngineCore 0x000000011f71c908 0x11b7f5000 + 66222344
10 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 16:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff204042ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2040462c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2053149f __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff2052fb7f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff2052ef8c CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff22ebe23a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 17:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff204042ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2040462c mach_msg + 60
2 QtWebEngineCore 0x000000011f723e26 0x11b7f5000 + 66252326
3 QtWebEngineCore 0x000000011f6e87bf 0x11b7f5000 + 66009023
4 QtWebEngineCore 0x000000011f6e926c 0x11b7f5000 + 66011756
5 QtWebEngineCore 0x000000011f6e8ddd 0x11b7f5000 + 66010589
6 QtWebEngineCore 0x000000011f71c908 0x11b7f5000 + 66222344
7 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 18:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff204042ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2040462c mach_msg + 60
2 QtWebEngineCore 0x000000011f723e26 0x11b7f5000 + 66252326
3 QtWebEngineCore 0x000000011f723bef 0x11b7f5000 + 66251759
4 QtWebEngineCore 0x000000011f6591c9 0x11b7f5000 + 65421769
5 QtWebEngineCore 0x000000011f6d2a5c 0x11b7f5000 + 65919580
6 QtWebEngineCore 0x000000011f68a998 0x11b7f5000 + 65624472
7 QtWebEngineCore 0x000000011f6f4eb8 0x11b7f5000 + 66059960
8 QtWebEngineCore 0x000000011f6f504a 0x11b7f5000 + 66060362
9 QtWebEngineCore 0x000000011f71c908 0x11b7f5000 + 66222344
10 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 19:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff204042ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2040462c mach_msg + 60
2 QtWebEngineCore 0x000000011f723e26 0x11b7f5000 + 66252326
3 QtWebEngineCore 0x000000011f6e87bf 0x11b7f5000 + 66009023
4 QtWebEngineCore 0x000000011f6e8f9a 0x11b7f5000 + 66011034
5 QtWebEngineCore 0x000000011f6e8e0d 0x11b7f5000 + 66010637
6 QtWebEngineCore 0x000000011f71c908 0x11b7f5000 + 66222344
7 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 20:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff204042ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2040462c mach_msg + 60
2 QtWebEngineCore 0x000000011f723e26 0x11b7f5000 + 66252326
3 QtWebEngineCore 0x000000011f6e87bf 0x11b7f5000 + 66009023
4 QtWebEngineCore 0x000000011f6e926c 0x11b7f5000 + 66011756
5 QtWebEngineCore 0x000000011f6e8e6d 0x11b7f5000 + 66010733
6 QtWebEngineCore 0x000000011f71c908 0x11b7f5000 + 66222344
7 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 21:
0 libsystem_pthread.dylib 0x00007fff20435420 start_wqthread + 0
Thread 22:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204042ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2040462c mach_msg + 60
2 QtWebEngineCore 0x000000011f723e26 0x11b7f5000 + 66252326
3 QtWebEngineCore 0x000000011f723bef 0x11b7f5000 + 66251759
4 QtWebEngineCore 0x000000011f6591c9 0x11b7f5000 + 65421769
5 QtWebEngineCore 0x000000011f6d2a5c 0x11b7f5000 + 65919580
6 QtWebEngineCore 0x000000011f68a998 0x11b7f5000 + 65624472
7 QtWebEngineCore 0x000000011f6f4eb8 0x11b7f5000 + 66059960
8 QtWebEngineCore 0x000000011f6f504a 0x11b7f5000 + 66060362
9 QtWebEngineCore 0x000000011f71c908 0x11b7f5000 + 66222344
10 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 23:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff204042ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2040462c mach_msg + 60
2 QtWebEngineCore 0x000000011f723e26 0x11b7f5000 + 66252326
3 QtWebEngineCore 0x000000011f6e87bf 0x11b7f5000 + 66009023
4 QtWebEngineCore 0x000000011f6e926c 0x11b7f5000 + 66011756
5 QtWebEngineCore 0x000000011f6e8e6d 0x11b7f5000 + 66010733
6 QtWebEngineCore 0x000000011f71c908 0x11b7f5000 + 66222344
7 libsystem_pthread.dylib 0x00007fff204398fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20435443 thread_start + 15
Thread 24:
0 libsystem_pthread.dylib 0x00007fff20435420 start_wqthread + 0
Thread 25:
0 libsystem_pthread.dylib 0x00007fff20435420 start_wqthread + 0
Thread 26:
0 libsystem_pthread.dylib 0x00007fff20435420 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000115f3be00 rcx: 0x00007f97dcc55418 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x0000000000000006 rbp: 0x00007f97dcc55440 rsp: 0x00007f97dcc55418
r8: 0x00007f97dcc55f48 r9: 0xfbf06bb749db8325 r10: 0x0000000115f3be00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x00007f97e131b1b8 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff2040a92e rfl: 0x0000000000000246 cr2: 0x00007f97dcc548c0
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream not available.
Thread 0 last branch register state not available.
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0x7fff6bb18000 - 0x7fff6bb27fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6bb28000 - 0x7fff6bb2afff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6bb2b000 - 0x7fff6bb33fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6bb34000 - 0x7fff6bb67fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6bb68000 - 0x7fff6bba4fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6bba5000 - 0x7fff6bd38fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bd39000 - 0x7fff6bd43fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bd44000 - 0x7fff6bec1fff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6bec2000 - 0x7fff6beeafff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d183000 - 0x7fff6d1dbfff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e285000 - 0x7fff6e28cfff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e28d000 - 0x7fff6e374fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f8f6000 - 0x7fff6f908fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73c06000 - 0x7fff73c11fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73e27000 - 0x7fff73e3ffff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff779b7000 - 0x7fff779befff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=2.4G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.4G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 512K 4
Activity Tracing 256K 1
CG backing stores 3240K 6
CG image 444K 32
CoreAnimation 252K 20
CoreGraphics 12K 2
CoreUI image data 3900K 30
Foundation 36K 2
Kernel Alloc Once 8K 1
MALLOC 1.6G 5382
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
MALLOC_REALLOC (reserved) 4K 1 reserved VM address space (unallocated)
Mach message 24K 4
OpenGL GLSL 384K 4
STACK GUARD 104K 26
Stack 156.2M 27
Stack Guard 56.0M 1
VM_ALLOCATE 217.7M 295
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 36.0M 638
__DATA_CONST 28.8M 319
__DATA_DIRTY 1728K 221
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 530.3M 249
__OBJC_RO 70.3M 1
__OBJC_RW 2496K 2
__TEXT 663.8M 625
__UNICODE 588K 1
mapped file 277.0M 54
shared memory 3228K 28
=========== ======= =======
TOTAL 4.0G 7989
TOTAL, minus reserved VM space 3.6G 7989
===== Log before crash start =====
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/anniehao/Desktop/2ib7.pdb format pdb
2ib7.pdb title:
Crystallographic and kinetic studies of human mitochondrial acetoacetyl-coa
thiolase (T2): the importance of potassium and chloride for its structure and
function [more info...]
Chain information for 2ib7.pdb #1
---
Chain | Description | UniProt
A B C D | acetyl-coa acetyltransferase | THIL_HUMAN
Non-standard residues in 2ib7.pdb #1
---
CL — chloride ion
GOL — glycerol (glycerin; propane-1,2,3-triol)
MES — 2-(N-morpholino)-ethanesulfonic acid
> select /A:37-427
2872 atoms, 2914 bonds, 391 residues, 1 model selected
> select /B:37-427
2872 atoms, 2914 bonds, 391 residues, 1 model selected
> select /C:36-427
2881 atoms, 2923 bonds, 392 residues, 1 model selected
> select /D:35-427
2887 atoms, 2929 bonds, 393 residues, 1 model selected
> select :CL
4 atoms, 4 residues, 1 model selected
> select :CL
4 atoms, 4 residues, 1 model selected
> hide sel atoms
> select :GOL
30 atoms, 25 bonds, 5 residues, 1 model selected
> hide sel atoms
> select :MES
48 atoms, 48 bonds, 4 residues, 1 model selected
> hide sel atoms
> select clear
> select
12498 atoms, 11753 bonds, 2484 residues, 1 model selected
> color sel cornflower blue
> color sel forest green
> color sel light sea green
> color sel purple
> color sel dark gray
> color sel cornflower blue
> select clear
> select ::name="HOH"
904 atoms, 904 residues, 1 model selected
> hide sel atoms
> select /A: 126
6 atoms, 5 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel hot pink
> color sel orange
> color sel hot pink
> color sel orange
> select /B: 126
6 atoms, 5 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel orange
> select /C: 126
6 atoms, 5 bonds, 1 residue, 1 model selected
> color sel orange
> show sel atoms
> select /D: 126
6 atoms, 5 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel orange
> select /A: 353
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel orange
> select /A: 385
10 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel orange
> select /A: 413
6 atoms, 5 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel orange
> select sequence Nβ3−Nα3
Nothing selected
> select /A: Nβ3
Expected an objects specifier or a keyword
> select /A: N3
Nothing selected
> select /A: 3
Nothing selected
> ui tool show "Show Sequence Viewer"
> sequence chain /A /B /C /D
Alignment identifier is 1
> select
> /A-D:42-49,53-54,88-92,119-123,147-155,161-163,172-177,185-186,191-192,238-240,248-250,287-297,310-319,347-352,407-414,418-426
2640 atoms, 2604 bonds, 368 residues, 1 model selected
> select
> /A-D:63-80,82-86,102-111,124-142,157-159,178-183,192-205,207-229,254-258,263-267,298-304,321-341,343-345,356-368,370-374,379-384,386-402
5312 atoms, 5324 bonds, 720 residues, 1 model selected
> select
> /A-D:42-49,53-54,88-92,119-123,147-155,161-163,172-177,185-186,191-192,238-240,248-250,287-297,310-319,347-352,407-414,418-426
2640 atoms, 2604 bonds, 368 residues, 1 model selected
> hide sel cartoons
> select
> /A-D:63-80,82-86,102-111,124-142,157-159,178-183,192-205,207-229,254-258,263-267,298-304,321-341,343-345,356-368,370-374,379-384,386-402
5312 atoms, 5324 bonds, 720 residues, 1 model selected
> undo
> select /A-D:233-234
68 atoms, 64 bonds, 8 residues, 1 model selected
> select /A-D:233-235
96 atoms, 92 bonds, 12 residues, 1 model selected
> select
> /A-D:42-49,53-54,88-92,119-123,147-155,161-163,172-177,185-186,191-192,238-240,248-250,287-297,310-319,347-352,407-414,418-426
2640 atoms, 2604 bonds, 368 residues, 1 model selected
> select clear
> select
> /A-D:63-80,82-86,102-111,124-142,157-159,178-183,192-205,207-229,254-258,263-267,298-304,321-341,343-345,356-368,370-374,379-384,386-402
5312 atoms, 5324 bonds, 720 residues, 1 model selected
> select clear
> select /A-D:131-132
56 atoms, 52 bonds, 8 residues, 1 model selected
> select /A-D:131-135
152 atoms, 148 bonds, 20 residues, 1 model selected
> undo
> select /A-D:126-127
44 atoms, 40 bonds, 8 residues, 1 model selected
> select /A-D:126-131
152 atoms, 148 bonds, 24 residues, 1 model selected
> select /A-D:119
24 atoms, 20 bonds, 4 residues, 1 model selected
> select /A-D:119-142
668 atoms, 664 bonds, 96 residues, 1 model selected
> color sel orange
> select
> /A-D:42-49,53-54,88-92,119-123,147-155,161-163,172-177,185-186,191-192,238-240,248-250,287-297,310-319,347-352,407-414,418-426
2640 atoms, 2604 bonds, 368 residues, 1 model selected
> select /A-D:413
24 atoms, 20 bonds, 4 residues, 1 model selected
> select /A-D:407-413
196 atoms, 196 bonds, 28 residues, 1 model selected
> select /A-D:414
32 atoms, 28 bonds, 4 residues, 1 model selected
> select /A-D:407-414
228 atoms, 228 bonds, 32 residues, 1 model selected
> select /A-D:426
36 atoms, 32 bonds, 4 residues, 1 model selected
> select /A-D:418-426
248 atoms, 244 bonds, 36 residues, 1 model selected
> select /A-D:414
32 atoms, 28 bonds, 4 residues, 1 model selected
> select /A-D:393-414
664 atoms, 672 bonds, 88 residues, 1 model selected
> color sel orange
> undo
> color sel cornflower blue
> select /A-D:119
24 atoms, 20 bonds, 4 residues, 1 model selected
> select /A-D:119
24 atoms, 20 bonds, 4 residues, 1 model selected
> select /A-D:126
24 atoms, 20 bonds, 4 residues, 1 model selected
> select /A-D:126
24 atoms, 20 bonds, 4 residues, 1 model selected
> color sel orange
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> show sel atoms
> hide sel cartoons
> style sel stick
Changed 24 atom styles
> style sel stick
Changed 24 atom styles
> undo
> select /A:127
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /A:127
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /A:384
4 atoms, 3 bonds, 1 residue, 1 model selected
> select /A:384-386
21 atoms, 22 bonds, 3 residues, 1 model selected
> color sel orange
> show sel atoms
> hide sel atoms
> hide sel cartoons
> show sel cartoons
> select /A:385
10 atoms, 10 bonds, 1 residue, 1 model selected
> select /A:385
10 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> select /A:126
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A:125-126
13 atoms, 12 bonds, 2 residues, 1 model selected
> select /A:126
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A:126-127
11 atoms, 10 bonds, 2 residues, 1 model selected
> color sel orange
> select /A:352
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /A:352-356
40 atoms, 40 bonds, 5 residues, 1 model selected
> color sel orange
> select /A:413
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A:413-418
30 atoms, 29 bonds, 6 residues, 1 model selected
> color sel orange
> select clear
> select
> /A:63-80,82-86,102-111,124-142,157-159,178-183,193-205,207-228,254-258,263-267,298-304,321-340,343-345,356-368,370-374,379-384,386-402
1310 atoms, 1312 bonds, 177 residues, 1 model selected
> select
> /A:42-49,53-54,88-92,119-123,147-155,161-163,173-177,185-186,191-192,238-240,248-250,287-297,310-319,347-352,407-414,418-426
656 atoms, 647 bonds, 91 residues, 1 model selected
> select
> /A:63-80,82-86,102-111,124-142,157-159,178-183,193-205,207-228,254-258,263-267,298-304,321-340,343-345,356-368,370-374,379-384,386-402
1310 atoms, 1312 bonds, 177 residues, 1 model selected
> select /A:416
4 atoms, 3 bonds, 1 residue, 1 model selected
> select /A:414-416
16 atoms, 15 bonds, 3 residues, 1 model selected
> select /A:324-369
358 atoms, 364 bonds, 46 residues, 1 model selected
> select /A:322-369
373 atoms, 380 bonds, 48 residues, 1 model selected
> select /A:414
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:414-418
24 atoms, 23 bonds, 5 residues, 1 model selected
> select /A:319
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /A:319-321
21 atoms, 20 bonds, 3 residues, 1 model selected
> select /A:142
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A:142-147
44 atoms, 44 bonds, 6 residues, 1 model selected
> select /A:123
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:123-124
17 atoms, 16 bonds, 2 residues, 1 model selected
> select /A:155-156
14 atoms, 13 bonds, 2 residues, 1 model selected
> select /A:155-157
20 atoms, 19 bonds, 3 residues, 1 model selected
> select
> /A:42-49,53-54,88-92,119-123,147-155,161-163,173-177,185-186,191-192,238-240,248-250,287-297,310-319,347-352,407-414,418-426
656 atoms, 647 bonds, 91 residues, 1 model selected
> preset "initial styles" sticks
Using preset: Initial Styles / Sticks
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> preset "initial styles" cartoon
Using preset: Initial Styles / Cartoon
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> preset "initial styles" "space-filling (single color)"
Using preset: Initial Styles / Space-Filling (Single Color)
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> preset "initial styles" "space-filling (chain colors)"
Using preset: Initial Styles / Space-Filling (Chain Colors)
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> style sel stick
Changed 656 atom styles
> style sel sphere
Changed 656 atom styles
> undo
> select clear
> style ball
Changed 12498 atom styles
> style sphere
Changed 12498 atom styles
> style stick
Changed 12498 atom styles
> show cartoons
> hide atoms
> ui tool show "Show Sequence Viewer"
> sequence chain /A /B /C /D
Alignment identifier is 1
> select /A-D:126
24 atoms, 20 bonds, 4 residues, 1 model selected
> select /A-D:123-126
120 atoms, 116 bonds, 16 residues, 1 model selected
> select /A-D:126
24 atoms, 20 bonds, 4 residues, 1 model selected
> select /A-D:126-127
44 atoms, 40 bonds, 8 residues, 1 model selected
> select /A-D:126
24 atoms, 20 bonds, 4 residues, 1 model selected
> show sel atoms
> select /A-D:125
28 atoms, 24 bonds, 4 residues, 1 model selected
> select /A-D:123-125
96 atoms, 92 bonds, 12 residues, 1 model selected
> select /A-D:126
24 atoms, 20 bonds, 4 residues, 1 model selected
> select /A-D:123-126
120 atoms, 116 bonds, 16 residues, 1 model selected
> color sel red
> color sel white
> color sel lime
> color sel magenta
> color sel cyan
> color sel black
> set bgColor white
> select clear
> lighting full
> lighting soft
> lighting simple
> lighting full
> select /A-D:123-124
68 atoms, 64 bonds, 8 residues, 1 model selected
> select /A-D:123-127
140 atoms, 136 bonds, 20 residues, 1 model selected
> select /A-D:126
24 atoms, 20 bonds, 4 residues, 1 model selected
> select /A-D:123-126
120 atoms, 116 bonds, 16 residues, 1 model selected
> set bgColor white
> set bgColor black
> color sel orange red
> select /A:37-427
2872 atoms, 2914 bonds, 391 residues, 1 model selected
> select /B:37-427
2872 atoms, 2914 bonds, 391 residues, 1 model selected
> color sel light sea green
> color sel cornflower blue
> select clear
> select /A-D:123
32 atoms, 28 bonds, 4 residues, 1 model selected
> select /A-D:123-126
120 atoms, 116 bonds, 16 residues, 1 model selected
> color sel red
> select /A-D:355
20 atoms, 16 bonds, 4 residues, 1 model selected
> select /A-D:353-355
88 atoms, 84 bonds, 12 residues, 1 model selected
> select /A-D:356
44 atoms, 44 bonds, 4 residues, 1 model selected
> select /A-D:352-356
160 atoms, 160 bonds, 20 residues, 1 model selected
> color sel red
> color sel orange red
> select clear
> select /A-D:126
24 atoms, 20 bonds, 4 residues, 1 model selected
> select /A-D:123-126
120 atoms, 116 bonds, 16 residues, 1 model selected
> color sel orange red
> select /A-D:384
16 atoms, 12 bonds, 4 residues, 1 model selected
> select /A-D:384-386
84 atoms, 88 bonds, 12 residues, 1 model selected
> select /A-D:385
40 atoms, 40 bonds, 4 residues, 1 model selected
> select /A-D:385
40 atoms, 40 bonds, 4 residues, 1 model selected
> show sel atoms
> select /A-D:384
16 atoms, 12 bonds, 4 residues, 1 model selected
> select /A-D:384-386
84 atoms, 88 bonds, 12 residues, 1 model selected
> color sel orange red
> select /A-D:353
32 atoms, 28 bonds, 4 residues, 1 model selected
> select /A-D:353
32 atoms, 28 bonds, 4 residues, 1 model selected
> show sel atoms
> select /A-D:413
24 atoms, 20 bonds, 4 residues, 1 model selected
> select /A-D:413-418
120 atoms, 116 bonds, 24 residues, 1 model selected
> color sel orange red
> select /A-D:373-413
1152 atoms, 1168 bonds, 164 residues, 1 model selected
> select /A-D:373-413
1152 atoms, 1168 bonds, 164 residues, 1 model selected
> select /A-D:413
24 atoms, 20 bonds, 4 residues, 1 model selected
> select /A-D:413
24 atoms, 20 bonds, 4 residues, 1 model selected
> show sel atoms
> select clear
> save /Users/anniehao/Desktop/image1.png supersample 3
> lighting simple
> lighting soft
> lighting full
> lighting soft
> lighting full
> save /Users/anniehao/Desktop/image2.png supersample 3
> coulombic
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for 2ib7.pdb_A SES surface #1.1: minimum, -15.54, mean -1.00,
maximum 11.65
Coulombic values for 2ib7.pdb_B SES surface #1.2: minimum, -13.84, mean -0.95,
maximum 14.73
Coulombic values for 2ib7.pdb_C SES surface #1.3: minimum, -17.32, mean -0.72,
maximum 10.85
Coulombic values for 2ib7.pdb_D SES surface #1.4: minimum, -15.16, mean -0.94,
maximum 9.01
To also show corresponding color key, enter the above coulombic command and
add key true
> ui tool show "Side View"
> save /Users/anniehao/Desktop/image3.png supersample 3
> sel/A: 353
Unknown command: sel/A: 353
> select /A: 353
8 atoms, 7 bonds, 1 residue, 1 model selected
> style sel sphere
Changed 8 atom styles
> style sel stick
Changed 8 atom styles
> style sel sphere
Changed 8 atom styles
> style sel ball
Changed 8 atom styles
> style sel sphere
Changed 8 atom styles
> style sel stick
Changed 8 atom styles
> style sel sphere
Changed 8 atom styles
> select /A: 385
10 atoms, 10 bonds, 1 residue, 1 model selected
> style sel sphere
Changed 10 atom styles
> style sel sphere
Changed 10 atom styles
> show sel atoms
> style sel sphere
Changed 10 atom styles
> select /A: 413
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A: 413, 358, 126
20 atoms, 17 bonds, 3 residues, 1 model selected
> select /A: 413, 358, 126, 353
28 atoms, 24 bonds, 4 residues, 1 model selected
> save /Users/anniehao/Desktop/image4.png supersample 3
> save /Users/anniehao/Desktop/image5.png supersample 3
> mlp sel
Map values for surface "2ib7.pdb_A SES surface": minimum -27.09, mean -4.347,
maximum 23.04
To also show corresponding color key, enter the above mlp command and add key
true
> mlp sel
Map values for surface "2ib7.pdb_A SES surface": minimum -27.09, mean -4.347,
maximum 23.04
To also show corresponding color key, enter the above mlp command and add key
true
> color bfactor sel
28 atoms, 4 residues, 1 surfaces, atom bfactor range 7.45 to 13.7
> select clear
> mlp
Map values for surface "2ib7.pdb_A SES surface": minimum -27.09, mean -4.347,
maximum 23.04
Map values for surface "2ib7.pdb_B SES surface": minimum -28.68, mean -4.254,
maximum 21.9
Map values for surface "2ib7.pdb_C SES surface": minimum -27.99, mean -4.277,
maximum 21.59
Map values for surface "2ib7.pdb_D SES surface": minimum -28.19, mean -4.352,
maximum 22.18
To also show corresponding color key, enter the above mlp command and add key
true
> coulombic
Coulombic values for 2ib7.pdb_A SES surface #1.1: minimum, -15.54, mean -1.00,
maximum 11.65
Coulombic values for 2ib7.pdb_B SES surface #1.2: minimum, -13.84, mean -0.95,
maximum 14.73
Coulombic values for 2ib7.pdb_C SES surface #1.3: minimum, -17.32, mean -0.72,
maximum 10.85
Coulombic values for 2ib7.pdb_D SES surface #1.4: minimum, -15.16, mean -0.94,
maximum 9.01
To also show corresponding color key, enter the above coulombic command and
add key true
> select /A: 413, 358, 126, 353
28 atoms, 24 bonds, 4 residues, 1 model selected
> select /A: 413, 385, 126, 353
30 atoms, 27 bonds, 4 residues, 1 model selected
> preset "molecular surfaces" "chain id coloring (opaque)"
Using preset: Molecular Surfaces / Chain ID Coloring (Opaque)
Changed 18 atom styles
Preset expands to these ChimeraX commands:
style (protein|nucleic|solvent) & @@draw_mode=0 stick
surface
color bychain targ s trans 0
> coulombic sel
Coulombic values for 2ib7.pdb_A SES surface #1.1: minimum, -15.54, mean -1.00,
maximum 11.65
To also show corresponding color key, enter the above coulombic command and
add key true
> coulombic sel
Coulombic values for 2ib7.pdb_A SES surface #1.1: minimum, -15.54, mean -1.00,
maximum 11.65
To also show corresponding color key, enter the above coulombic command and
add key true
> select clear
> coulombic
Coulombic values for 2ib7.pdb_A SES surface #1.1: minimum, -15.54, mean -1.00,
maximum 11.65
Coulombic values for 2ib7.pdb_B SES surface #1.2: minimum, -13.84, mean -0.95,
maximum 14.73
Coulombic values for 2ib7.pdb_C SES surface #1.3: minimum, -17.32, mean -0.72,
maximum 10.85
Coulombic values for 2ib7.pdb_D SES surface #1.4: minimum, -15.16, mean -0.94,
maximum 9.01
To also show corresponding color key, enter the above coulombic command and
add key true
> select /A: 413, 385, 126, 353
30 atoms, 27 bonds, 4 residues, 1 model selected
> save /Users/anniehao/Desktop/image6.png supersample 3
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-16.5.2
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,2
Processor Name: Quad-Core Intel Core i5
Processor Speed: 2 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 512 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 1554.140.20.0.0 (iBridge: 18.16.14759.0.1,0)
Software:
System Software Overview:
System Version: macOS 11.6 (20G165)
Kernel Version: Darwin 20.6.0
Time since boot: 64 days 11:56
Graphics/Displays:
Intel Iris Plus Graphics:
Chipset Model: Intel Iris Plus Graphics
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x8a53
Revision ID: 0x0007
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.1.0
Babel: 2.11.0
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.4
ChimeraX-AddH: 2.2.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.6
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.41.5
ChimeraX-AtomicLibrary: 8.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.4
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.5
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.1
ChimeraX-PDB: 2.6.8
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.7.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.24.3
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.4
decorator: 5.1.1
docutils: 0.19
entrypoints: 0.4
executing: 1.2.0
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.7.31
imagesize: 1.4.1
importlib-metadata: 5.1.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 5.1.0
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.4
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
platformdirs: 2.5.4
prompt-toolkit: 3.0.33
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.6
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
setuptools: 65.1.1
setuptools-scm: 7.0.5
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
typing-extensions: 4.4.0
urllib3: 1.26.13
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.11.0
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 3 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics hardware encountered an error and was reset → Graphics crash, macOS 11.6, Intel Iris Plus Graphics |
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Apple Intel graphics crash.