glDrawBuffer: invalid operation

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform: Linux-5.15.0-58-generic-x86_64-with-glibc2.35
ChimeraX Version: 1.6.dev202301280224 (2023-01-28 02:24:25 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Errors
---
error | Bundle 'ChimeraX-ISOLDE' custom initialization failed
warning | Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 490, in get_module
m = importlib.import_module(self.package_name)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/importlib/init.py", line
127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 850, in exec_module
File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
File "/home/mnakasone/.local/share/ChimeraX/1.6/site-
packages/chimerax/isolde/init.py", line 51, in <module>
version = _version()
File "/home/mnakasone/.local/share/ChimeraX/1.6/site-
packages/chimerax/isolde/init.py", line 49, in _version
return pkg_resources.require('ChimeraX-ISOLDE')[0].version
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/pkg_resources/init.py", line 909, in require
needed = self.resolve(parse_requirements(requirements))
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/pkg_resources/init.py", line 795, in resolve
raise DistributionNotFound(req, requirers)
pkg_resources.DistributionNotFound: The 'ChimeraX-Clipper~=0.20.0'
distribution was not found and is required by ChimeraX-ISOLDE

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 364, in initialize
api = self._get_api(session.logger)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 509, in _get_api
m = self.get_module()
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 492, in get_module
raise ToolshedError("Error importing bundle %s's module: %s" % (self.name,
str(e)))
chimerax.core.toolshed.ToolshedError: Error importing bundle ChimeraX-ISOLDE's
module: The 'ChimeraX-Clipper~=0.20.0' distribution was not found and is
required by ChimeraX-ISOLDE

UCSF ChimeraX version: 1.6.dev202301280224 (2023-01-28)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX

open /home/mnakasone/Downloads/cryosparc_P4_J227_map_sharp.mrc

Opened cryosparc_P4_J227_map_sharp.mrc as #1, grid size 256,256,256, pixel
0.867, shown at level 0.0273, step 1, values float32

volume #1 level 0.01171

open
"/home/mnakasone/Downloads/cryosparc_P4_J272_class_00_00102_volume_sharp
(2).mrc"

Opened cryosparc_P4_J272_class_00_00102_volume_sharp (2).mrc as #2, grid size
256,256,256, pixel 0.867, shown at level 0.0297, step 1, values float32

volume #2 level 0.02239

volume #1 color #1a5fb4

set bgColor white

volume #1 color #241f31

volume #1 color #1a5fb4

volume #2 color #c01c28

volume #2 color #e5a50a

volume #2 color #f5c211

vop morph

volume morph

Missing or invalid "volumes" argument: empty atom specifier

select add #1

2 models selected

select add #2

4 models selected

vop morph

volume morph

Missing or invalid "volumes" argument: empty atom specifier

ui tool show "Volume Viewer"

vop morph

volume morph

Missing or invalid "volumes" argument: empty atom specifier

morph

Missing or invalid "structures" argument: empty atom specifier

volume morph

Missing or invalid "volumes" argument: empty atom specifier

volume morph #1-10

Opened morph as #3, grid size 256,256,256, pixel 0.867, shown at step 1,
values float32

volume morph #1-10

Opened morph as #4, grid size 256,256,256, pixel 0.867, shown at step 1,
values float32

volume morph #1-10

Opened morph as #5, grid size 256,256,256, pixel 0.867, shown at step 1,
values float32

volume morph #1-10

Opened morph as #6, grid size 256,256,256, pixel 0.867, shown at step 1,
values float32

volume morph #1-10

Opened morph as #7, grid size 256,256,256, pixel 0.867, shown at step 1,
values float32

volume #2 level 0.03344

volume #3 level 0.02168

volume morph #1-10

Opened morph as #8, grid size 256,256,256, pixel 0.867, shown at step 1,
values float32

volume morph #1-10

Opened morph as #9, grid size 256,256,256, pixel 0.867, shown at step 1,
values float32

volume #9 level 0.02062

volume #8 level 0.02133

volume #7 level 0.02133

volume #6 level 0.01955

volume morph #1-10

Opened morph as #10, grid size 256,256,256, pixel 0.867, shown at step 1,
values float32

volume #10 level 0.02097

volume morph #1-10

Opened morph as #11, grid size 256,256,256, pixel 0.867, shown at step 1,
values float32

volume #11 level 0.02133

volume morph #1-2

Opened morph as #12, grid size 256,256,256, pixel 0.867, shown at step 1,
values float32

volume morph #1-2

Opened morph as #13, grid size 256,256,256, pixel 0.867, shown at step 1,
values float32

volume morph #1-2

Opened morph as #14, grid size 256,256,256, pixel 0.867, shown at step 1,
values float32

volume #3 level 0.02879

volume #5 level 0.0281

close #3

close #7

close #9

close #5-6,​8,​10-14

close #4

show #!1 models

show #!2 models

fitmap #1 inMap #2

Fit map cryosparc_P4_J227_map_sharp.mrc in map
cryosparc_P4_J272_class_00_00102_volume_sharp (2).mrc using 388280 points
correlation = 0.9307, correlation about mean = 0.7558, overlap = 436.8
steps = 112, shift = 9.71, angle = 4.03 degrees

Position of cryosparc_P4_J227_map_sharp.mrc (#1) relative to
cryosparc_P4_J272_class_00_00102_volume_sharp (2).mrc (#2) coordinates:
Matrix rotation and translation
0.99820078 -0.02060691 -0.05630774 7.54006188
0.02266490 0.99908903 0.03615818 -6.08346442
0.05551133 -0.03736933 0.99775850 -11.28560744
Axis -0.52277164 -0.79501999 0.30765731
Axis point 193.21001995 -0.00000000 103.80574150
Rotation angle (degrees) 4.03263666
Shift along axis -2.57735437

volume morph #1-2

Map positions are not the same, cryosparc_P4_J272_class_00_00102_volume_sharp
(2).mrc #2 and cryosparc_P4_J227_map_sharp.mrc #1. Use the "volume resample"
command to make a copy of one map with the same grid as the other map.

volume resample

Missing or invalid "volumes" argument: empty atom specifier

volume morph

Missing or invalid "volumes" argument: empty atom specifier

volume morph #1-10

Map positions are not the same, cryosparc_P4_J272_class_00_00102_volume_sharp
(2).mrc #2 and cryosparc_P4_J227_map_sharp.mrc #1. Use the "volume resample"
command to make a copy of one map with the same grid as the other map.

volume #1 level 0.02359

An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command "graphics restart" after changing the settings that caused the error.

GLError(
err = 1282,
description = b'invalid operation',
baseOperation = glDrawBuffer,
cArguments = (GL_BACK,)
)

Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/core/updateloop.py", line 73, in draw_new_frame
view.draw(check_for_changes = False)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 177, in draw
self._draw_scene(camera, drawings)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 261, in _draw_scene
draw_highlight_outline(r, highlight_drawings, color = self._highlight_color,
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1609, in draw_highlight_outline
r.outline.finish_rendering_outline(color=color, pixel_width=pixel_width)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 1885, in finish_rendering_outline
r.pop_framebuffer()
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 722, in pop_framebuffer
fb.activate()
File "/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2271, in activate
GL.glDrawBuffer(self._draw_buffer)
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1282,
description = b'invalid operation',
baseOperation = glDrawBuffer,
cArguments = (GL_BACK,)
)

OpenGL version: 3.3.0 NVIDIA 520.61.05
OpenGL renderer: NVIDIA GeForce RTX 3090/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: en_GB.UTF-8
Qt version: PyQt6 6.4.0, Qt 6.4.0
Qt runtime version: 6.4.2
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
DISPLAY=:0
Manufacturer: ASUSTeK COMPUTER INC.
Model: WS-C621E-SAGE Series
OS: Ubuntu 22.04 Jammy Jellyfish
Architecture: 64bit ELF
Virtual Machine: none
CPU: 64 Intel(R) Xeon(R) Silver 4216 CPU @ 2.10GHz
Cache Size: 22528 KB
Memory:

total used free shared buff/cache available

Mem: 125Gi 33Gi 69Gi 113Mi 22Gi 90Gi
Swap: 15Gi 10Gi 4.6Gi

Graphics:

3b:00.0 VGA compatible controller [0300]: NVIDIA Corporation GA102 RTX 3090 [10de:2204] (rev a1)
Subsystem: eVga.com. Corp. GA102 RTX 3090 [3842:3982]
Kernel driver in use: nvidia

Installed Packages:

alabaster: 0.7.13
appdirs: 1.4.4
asttokens: 2.2.1
Babel: 2.11.0
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2022.12.7
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.5.8
ChimeraX-AddH: 2.2.3
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.8
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.7
ChimeraX-AtomicLibrary: 10.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.1
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.dev202301280224
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3.3
ChimeraX-DockPrep: 1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.6.dev0
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-LinuxSupport: 1.0.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.11
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.11
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.8
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10
ChimeraX-PDB: 2.6.13
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.1
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.26
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.6
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
comm: 0.1.2
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.6
decorator: 5.1.1
distro: 1.7.0
docutils: 0.19
entrypoints: 0.4
executing: 1.2.0
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.9.26
imagesize: 1.4.1
importlib-metadata: 6.0.0
ipykernel: 6.19.2
ipython: 8.7.0
ipython-genutils: 0.2.0
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 7.4.8
jupyter-core: 5.1.5
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.2
matplotlib: 3.6.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.8
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 23.0
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 22.2.2
pkginfo: 1.8.3
platformdirs: 2.6.2
prompt-toolkit: 3.0.36
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.4.0
PyQt6-Qt6: 6.4.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.2
python-dateutil: 2.8.2
pytz: 2022.7.1
pyzmq: 25.0.0
qtconsole: 5.4.0
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.3
setuptools: 65.1.1
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.8.0
urllib3: 1.26.14
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.12.0

[Tom Goddard]

Probably a graphics driver bug. RTX 3090 with Nvidia driver 520.61.05 (Oct 2022).