![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Sep 16, 2021:
- 11:55 PM Ticket #5247 (Make download and older releases pages easier to maintain) created by
- With the changes to the download page to emphasis the download page …
- 11:26 PM Ticket #5210 (Session restore is unaware of BlastProteinResults) closed by
- fixed: Fixed the Qt bug (#5238) that was holding up closure of this ticket.
- 10:21 PM Ticket #5246 (OpenGL error in glBufferData opening virus PDB file) created by
- […]
- 10:20 PM Ticket #5245 (Crash opening a pdb format file) created by
- […]
- 9:30 PM Ticket #5238 (Restoring session with Blastresults on macOS shows Qt error) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/112f044a6875761cb18a6105858992 …
- 6:13 PM Ticket #5244 (Crash in garbage collection when closing a tool) created by
- […] 6zgg.pdb
- 5:36 PM Ticket #5243 (make session with pre-1.3 blast results openable) created by
- Another issue to consider is enabling new ChimeraX to load blast …
- 5:19 PM Ticket #5242 (Saving session gives OpenMM SyntaxWarning "is" vs "==") created by
- […]
- 3:43 PM Ticket #5241 (Blastprotein: Ambiguous behavior of sequence-only hits) created by
- Some rows are sequence-only and do not have a corresponding PDB …
- 3:16 PM Ticket #5240 (Blastprotein session restore tries to access job, which doesn't exist) created by
- […] blastp.cxs
- 3:04 PM Ticket #5239 (One-time registration) created by
- As per 8/12/2021 group meeting notes 12 August 2021: …
- 2:39 PM Dev2021-9-16 edited by
- (diff)
- 1:36 PM Ticket #5238 (Restoring session with Blastresults on macOS shows Qt error) created by
- When restoring a Blast session: {{{<QNSWindow: 0x7fe052fd40f0; …
- 1:25 PM Ticket #5237 (Windows fatal exception 0x8001010E in open file dialog, RPC_E_WRONG_THREAD) created by
- […]
- 12:16 PM 2021-9-16 edited by
- (diff)
- 11:26 AM 2021-9-16 edited by
- (diff)
- 9:16 AM Ticket #5235 (Unknown crash) closed by
- can't reproduce
- 9:15 AM Ticket #5234 (Unknown crash) closed by
- can't reproduce
- 9:14 AM Ticket #5233 (Crash showing Open dialog) closed by
- can't reproduce: Another instance of the RPC_E_WRONG_THREAD crash.
- 6:35 AM Ticket #5236 (Crash in OpenMM finding clashes) created by
- […]
- 6:01 AM Ticket #5235 (Unknown crash) created by
- […]
- 5:51 AM Ticket #5234 (Unknown crash) created by
- […]
- 2:23 AM Ticket #5233 (Crash showing Open dialog) created by
- […]
Sep 15, 2021:
- 11:52 PM Dev2021-9-16 edited by
- (diff)
- 10:52 PM Ticket #5137 (Toolbar appearance changed on Mac) closed by
- fixed: Reverted in …
- 5:06 PM Ticket #4501 (Easier import for MD) closed by
- fixed: Okay added a 'slider' option, which defaults to true, to opening MD …
- 4:05 PM Ticket #5113 (Session depends on atomic bundle when no atomic models opened) closed by
- fixed: Using the new include_state StateManager method allows 1.3 sessions to …
- 2:49 PM ChangeLog edited by
- (diff)
- 12:05 PM Ticket #5230 (Crash in glClear) closed by
- nonchimerax: Probable defective Radeon graphics driver on Windows.
- 11:58 AM Ticket #5232 (Add "interfaces select" command) closed by
- fixed: Done. I added the "interfaces select" command that selects residues …
- 11:53 AM Ticket #5232 (Add "interfaces select" command) created by
- Begin forwarded message: From: Vorländer,Matthias Kopano via …
- 11:45 AM Ticket #5229 (Crash creating QWebEngineProfile) closed by
- limitation: Windows 7 is not supported.
- 11:42 AM Ticket #5231 (Qt crash during exit) closed by
- duplicate
- 11:42 AM ChangeLog edited by
- (diff)
- 11:33 AM Ticket #5231 (Qt crash during exit) created by
- […]
- 10:38 AM Ticket #4723 (Dead links in "toolshed list") closed by
- fixed: Fixed by limiting links to bundles that are available in the toolshed.
- 6:00 AM Ticket #5230 (Crash in glClear) created by
- […]
- 1:37 AM Ticket #5229 (Crash creating QWebEngineProfile) created by
- […]
Sep 14, 2021:
- 5:45 PM Ticket #5040 (SSL failure during registration attempt) closed by
- can't reproduce: Unable to reproduce.
- 4:39 PM Ticket #5228 (Blastprotein: Visual fixes) created by
- Paraphrased from Elaine's email: 1) Make buttons more like other …
- 4:36 PM Ticket #5227 (Blastprotein: Expose uniref databases) created by
- We have the databases on Plato and the infrastructure in place to …
- 3:26 PM Ticket #5218 (surface color value on mouseover replaced by chain info in status line) closed by
- fixed: Fixed. Made surface value status message suppress chain description …
- 3:13 PM Ticket #5222 (core/state.py: Allow NamedTuples in bundle data) closed by
- not a bug: OK, that makes sense. The only other suggestion I'd make would be to …
- 1:53 PM Dev2021-9-16 created by
- 1:50 PM DeveloperMeetings edited by
- (diff)
- 1:49 PM 2021-9-16 created by
- 1:49 PM 2021-9-9 edited by
- (diff)
- 1:45 PM DeveloperMeetings edited by
- (diff)
- 1:42 PM Ticket #5225 (Qt crash during exit) closed by
- fixed: I put in code so the user is not asked to report Mac crashes that …
- 1:41 PM Ticket #5225 (Qt crash during exit) reopened by
- 1:18 PM Ticket #5221 (Crash capturing file-history thumbnail) closed by
- can't reproduce: Crashed in glReadPixels() call via PyOpenGL. That routine is handed a …
- 11:23 AM Ticket #5210 (Session restore is unaware of BlastProteinResults) reopened by
- 11:03 AM Ticket #5029 (Crash opening PDB file) closed by
- fixed: No further feedback received from user.
- 10:08 AM Ticket #5226 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) closed by
- duplicate: Hi Daniel, Thanks for reporting this problem. It has been fixed in …
- 9:52 AM Ticket #5226 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) created by
- […]
- 9:38 AM Ticket #5225 (Qt crash during exit) closed by
- can't reproduce
- 6:59 AM Ticket #5225 (Qt crash during exit) created by
- […]
- 5:57 AM Ticket #5224 (bond types) created by
- […] grade-MNU.pdb
- 12:40 AM Ticket #5219 (Blast Protein ignores numbers input into dialog, uses defaults instead) closed by
- fixed: Should be fixed by …
- 12:40 AM Ticket #5210 (Session restore is unaware of BlastProteinResults) closed by
- fixed: Should be fixed by …
Sep 13, 2021:
- 11:22 PM Ticket #5223 (Replace Opal web services) created by
- The Opal web services use the suds_jurko pypi package from 2014. That …
- 11:12 PM Ticket #5222 (core/state.py: Allow NamedTuples in bundle data) created by
-
Would be good to have some way to register
NamedTuples with … - 7:49 PM Ticket #5221 (Crash capturing file-history thumbnail) created by
- […]
- 4:46 PM Ticket #5206 (Clicking "Coloring" in AlphaFold panel does not show the coloring panel) closed by
- nonchimerax: Does the AlphaFold coloring panel ever show? For instance if you just …
- 4:02 PM Ticket #5207 (Matchmaker: 'NoneType' object has no attribute 'setChecked') closed by
- fixed: The settings/options callback loop doesn't get broken quickly enough …
- 3:57 PM Ticket #5211 (hide_dust: local variable 'maps' referenced before assignment) closed by
- duplicate: Fixed 3 months ago. #4829
- 3:48 PM Ticket #5202 (Model draw order not consistent) closed by
- not a bug: I guess you are expecting models that are identical to each other and …
- 3:42 PM Ticket #5201 (Parse error for 'alphafold predict') closed by
- duplicate: This error is from pressing the AlphaFold tool Predict button without …
- 3:34 PM Ticket #5220 (Blastprotein: List index out of range while parsing NR results) created by
- […]
- 3:14 PM Ticket #5219 (Blast Protein ignores numbers input into dialog, uses defaults instead) created by
- Clicking the "Blast" button ignores different values for maxseq and …
- 1:59 PM Ticket #5218 (surface color value on mouseover replaced by chain info in status line) created by
- There is dueling information sent to the status line. It is very hard …
- 12:39 PM Ticket #5217 (blast protein lists same hit multiple times) created by
- Isn't there some option to consolidate multiple hits to the same entry …
- 12:14 PM Ticket #5216 (need better parsing of BlastProtein AlphaFold results) created by
- Often some of the column values are blank but I believe that to be a …
- 10:39 AM Ticket #5215 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) closed by
- duplicate: Hi Michael, Thanks for reporting this problem. It is fixed in the …
- 10:37 AM Ticket #5214 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- duplicate: Hi Luca, Thanks for reporting this problem. It is fixed in the 1.2.5 …
- 10:35 AM Ticket #5213 (Error using saved tool positioning) closed by
- duplicate
- 10:33 AM Ticket #5212 (Crash showing Open dialog) closed by
- can't reproduce
- 9:21 AM Ticket #5209 (Failure initializing graphics) closed by
- limitation: Windows 8
- 9:20 AM Ticket #5208 (Failure initializing graphics) closed by
- limitation: Windows 8
- 9:05 AM Ticket #5204 (Open Chimera session) closed by
- duplicate
- 9:03 AM Ticket #5203 (bigalpha.py: can't set residues.numbers) closed by
- not a bug: Hi Shujun, The bigalpha.py script uses features that are only …
- 8:46 AM Ticket #5195 ('ModelMenuButton' does not have a signal with the signature value_changed()) closed by
- can't reproduce: Happened immediately after opening a session. No idea how this is …
- 6:45 AM Ticket #5215 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) created by
- […]
- 5:08 AM Ticket #5214 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
Sep 12, 2021:
- 9:01 PM Ticket #5213 (Error using saved tool positioning) created by
- […]
- 5:32 PM Ticket #5212 (Crash showing Open dialog) created by
- […]
- 12:33 PM Ticket #5211 (hide_dust: local variable 'maps' referenced before assignment) created by
- […]
- 11:07 AM Ticket #5210 (Session restore is unaware of BlastProteinResults) created by
- […]
Sep 11, 2021:
- 9:17 PM Ticket #5209 (Failure initializing graphics) created by
- […]
- 8:35 PM Ticket #5208 (Failure initializing graphics) created by
- […]
- 8:10 PM Ticket #5200 (Blastprotein: List index out of range if there are no results) closed by
- fixed: Should be fixed by …
- 7:59 PM Ticket #5205 (AlphaFold cannot import BlastProtein) closed by
- fixed: Should be fixed in tomorrow's daily build by …
- 6:48 PM Ticket #5207 (Matchmaker: 'NoneType' object has no attribute 'setChecked') created by
- […]
Sep 10, 2021:
- 11:44 PM Ticket #5193 (Already installed bundle produces traceback instead of message) closed by
- duplicate: Duplicate of #4631. Please install ChimeraX 1.2.5.
- 11:43 PM Ticket #4626 (Already-installed bundle raising error) closed by
- duplicate: Duplicate of #4631
- 11:42 PM Ticket #4876 (Traceback when bundle already installed) closed by
- duplicate: Duplicate of #4631. Please install ChimeraX 1.2.5.
- 11:29 PM Ticket #4513 (Registration check failure) closed by
- fixed: It looks like the preregistration file was corrupted. Please remove …
- 10:40 PM Ticket #4639 (bundle_builder ignoring MACOSX_DEPLOYMENT_TARGET) closed by
- fixed: Fixed. Bundle builder now takes into account the …
- 10:22 PM Ticket #5206 (Clicking "Coloring" in AlphaFold panel does not show the coloring panel) created by
- […] AlphaFold_coloring.png
- 4:35 PM Ticket #4975 (Notification of new releases) closed by
- fixed: Added additional toolshed settings to control how often to check. …
- 4:26 PM Ticket #5205 (AlphaFold cannot import BlastProtein) created by
- […]
- 9:52 AM Ticket #5204 (Open Chimera session) created by
- […]
- 8:46 AM Ticket #5203 (bigalpha.py: can't set residues.numbers) created by
- […]
- 4:08 AM Ticket #5202 (Model draw order not consistent) created by
- […]
Sep 9, 2021:
- 11:52 PM Ticket #5201 (Parse error for 'alphafold predict') created by
- […]
- 11:06 PM Ticket #5200 (Blastprotein: List index out of range if there are no results) created by
- […]
- 8:38 PM Ticket #5199 (Eliminate QWebEngineUrlScheme.registerScheme warning) created by
- […]
- 6:37 PM Ticket #5197 (Graphics crash, macOS 10.15.6, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple graphics driver crash.
- 6:35 PM Ticket #5198 (Transparent background not transparent when selection outline shown) closed by
- fixed: Fixed. Offscreen rendering was making a framebuffer with no alpha …
- 5:43 PM Ticket #5190 (glUniformMatrix4fv: invalid operation) closed by
- can't reproduce: Has been reported a half dozen times, including once by me #4891. Was …
- 5:29 PM Ticket #5188 (Graphics crash, macOS 10.14.6, GeForce GT 750M, report 6) closed by
- nonchimerax: Apple graphics driver crash.
- 5:25 PM Ticket #5187 (Crash on exit) closed by
- nonchimerax: ChimeraX crashed when it was shutting down in Qt window toolkit …
- 5:16 PM Ticket #5186 (UniProt ID arg: can't hand empty text to next_token()) closed by
- fixed: Fixed. Pressed AlphaFold panel Predict button without providing a …
- 4:40 PM Ticket #5198 (Transparent background not transparent when selection outline shown) created by
- […]
- 4:24 PM Ticket #5197 (Graphics crash, macOS 10.15.6, Intel Iris Plus Graphics) created by
- […]
- 4:21 PM Ticket #5099 (BLAST gui shows wrong database and chain when the blastprotein command ...) closed by
- fixed: OK, the query parameters are shown in the results window as of …
- 3:22 PM Ticket #5196 (Blastprotein sometimes requests invalid ID from AlphaFold) created by
- Screenshot attached. IDs passed to alphafold fetch are not always the …
- 3:19 PM Ticket #3014 (Blast Protein tool: threading) closed by
- fixed: As of tonight's daily build, several instances of the blastprotein …
- 2:11 PM Ticket #5177 (Blast results: wrapped C/C++ object of type HtmlView has been deleted) closed by
- fixed
- 12:36 PM Ticket #5195 ('ModelMenuButton' does not have a signal with the signature value_changed()) created by
- […]
- 12:29 PM NTTData edited by
- (diff)
- 12:06 PM Ticket #5194 (Meta: Rewrite BLAST GUI in Qt) created by
- 9:50 AM Ticket #5192 (Crash in malloc, macOS 11.5.2, ARM cpu) closed by
- can't reproduce
- 9:40 AM Ticket #5191 (Crash iterating through a Collection after pressing Coulombic toolbar icon) closed by
- can't reproduce
- 9:34 AM Ticket #5189 (Error in toolshed error message) closed by
- duplicate: Hi Kartik, ChimeraX was trying to tell you that the bundle you were …
- 9:20 AM Ticket #5193 (Already installed bundle produces traceback instead of message) created by
- […]
- 3:10 AM Ticket #5192 (Crash in malloc, macOS 11.5.2, ARM cpu) created by
- […]
Sep 8, 2021:
- 9:44 PM Ticket #5191 (Crash iterating through a Collection after pressing Coulombic toolbar icon) created by
- […]
- 6:53 PM Ticket #5190 (glUniformMatrix4fv: invalid operation) created by
- […]
- 4:16 PM Ticket #5189 (Error in toolshed error message) created by
- […]
- 3:02 PM Ticket #5188 (Graphics crash, macOS 10.14.6, GeForce GT 750M, report 6) created by
- […]
- 2:35 PM Ticket #5162 (Support 2-character chain IDs in SEQRES) closed by
- fixed: SEQRES now preserves 2-character chain IDs. I can't test whether this …
- 2:07 PM Ticket #5187 (Crash on exit) created by
- […]
- 1:19 PM Ticket #5186 (UniProt ID arg: can't hand empty text to next_token()) created by
- […]
- 1:17 PM Ticket #5185 (Missing bond) closed by
- not a bug
- 1:15 PM Ticket #5185 (Missing bond) created by
- The following bug report has been submitted: Platform: …
- 12:01 PM Ticket #5168 (self._positions is None) closed by
- fixed: Okay, I've committed a "fix", but since I've never been able to …
- 11:53 AM Ticket #5182 (Crash handling AlphaFold results) closed by
- can't reproduce: I tried running AlphaFold prediction on Windows in ChimeraX Sep 8, …
- 11:35 AM Ticket #5184 (Graphics driver crash, macOS 10.15.7, Intel Iris Plus Graphics 640) closed by
- nonchimerax: Apple graphics driver crash.
- 11:31 AM Ticket #5180 (ctypes crash) closed by
- can't reproduce: Not much info in the traceback. Thread 36 is in QFileInfoGatherer and …
- 11:16 AM Ticket #5179 (modeller refine off by one?) closed by
- fixed: Second case now also fixed.
- 10:54 AM Training edited by
- (diff)
- 10:16 AM Ticket #5184 (Graphics driver crash, macOS 10.15.7, Intel Iris Plus Graphics 640) created by
- […]
- 8:52 AM Ticket #5181 (Color chooser crash on Mac dragging color swatch) closed by
- nonchimerax
- 4:09 AM Ticket #5183 (Features covers image on download page for some versions of Chrome) created by
- […] Screenshot_2.png
- 2:32 AM Ticket #5182 (Crash handling AlphaFold results) created by
- […]
Sep 7, 2021:
- 7:46 PM Ticket #5181 (Color chooser crash on Mac dragging color swatch) created by
- […]
- 5:25 PM Ticket #5173 (Trojan in distribution?) closed by
- nonchimerax
- 4:32 PM Ticket #5084 (OpenMM 7.6) closed by
- fixed: Ok I updated OpenMM to 7.6.0 in ChimeraX using your Linux tar ball and …
- 2:22 PM Ticket #5134 (Blastprotein Qt GUI breaks alphafold search) closed by
- fixed
- 12:02 PM Ticket #5180 (ctypes crash) created by
- […]
- 11:59 AM Ticket #5172 (Graphics driver crash, macOS 11.3.1, Intel UHD Graphics 617) closed by
- nonchimerax: Crashed in Apple's graphics driver Graphics hardware encountered an …
- 11:57 AM Ticket #5171 (Graphics driver crash, macOS 11.5.2, Intel Iris Graphics 6100) closed by
- nonchimerax: Crashed in Apple's graphics driver Graphics hardware encountered an …
- 11:38 AM Ticket #5167 (Crash computing surface cap) closed by
- duplicate: Duplicate of #4630. Believed fixed a few months ago but fix is not in …
- 11:25 AM Ticket #5163 (mmCIF UniProt mapping not robust against '?' data) closed by
- fixed: Fixed. Chain B of 6zzx has the uniprot author sequence range going …
- 11:10 AM 2021-9-9 created by
- 11:09 AM DeveloperMeetings edited by
- (diff)
- 10:24 AM Ticket #5178 (unhashable type: 'Color') closed by
- fixed
- 9:30 AM Ticket #5175 (Unable to open file for writing PDB) closed by
- can't reproduce
- 9:21 AM Ticket #5174 (Index error opening regular PDB in MD Viewer) closed by
- limitation
- 9:10 AM Ticket #5170 (Crash showing system color panel) closed by
- can't reproduce: backingScaleFactor is supposed to be 1 or 2, depending on whether it's …
- 9:04 AM Ticket #5169 (Qt crash during exit) closed by
- can't reproduce
- 8:37 AM Ticket #5179 (modeller refine off by one?) created by
- commands: open 1www sequence chain /V modeller refine 1/V:1:10-16 …
- 7:05 AM Ticket #5178 (unhashable type: 'Color') created by
- […]
Sep 6, 2021:
- 11:04 AM Ticket #5177 (Blast results: wrapped C/C++ object of type HtmlView has been deleted) created by
- […]
- 10:52 AM Ticket #5176 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
- 6:49 AM Ticket #5175 (Unable to open file for writing PDB) created by
- […]
- 4:44 AM Ticket #5174 (Index error opening regular PDB in MD Viewer) created by
- […]
- 3:26 AM Ticket #5173 (Trojan in distribution?) created by
- Could well be a false detection, but my university-installed McAfee …
Sep 5, 2021:
- 9:37 PM Ticket #5172 (Graphics driver crash, macOS 11.3.1, Intel UHD Graphics 617) created by
- […]
- 8:23 PM Ticket #5171 (Graphics driver crash, macOS 11.5.2, Intel Iris Graphics 6100) created by
- […]
- 4:29 PM Ticket #5170 (Crash showing system color panel) created by
- […]
- 11:51 AM Ticket #5169 (Qt crash during exit) created by
- […]
- 6:28 AM Ticket #5168 (self._positions is None) created by
- […]
Sep 4, 2021:
- 11:20 PM Ticket #5167 (Crash computing surface cap) created by
- […]
- 5:47 PM Ticket #5166 (Fit in map gives wrong position if moved model has a moved parent) closed by
- fixed: Fixed. Code that moved atomic structures, maps or atoms into another …
- 4:56 PM Ticket #5166 (Fit in map gives wrong position if moved model has a moved parent) created by
- […]
- 12:39 AM Ticket #5165 (AlphaFold second prediction overwrites first prediction) closed by
- fixed: Fixed. AlphaFold Run tool was a single instance and remembered the …
Sep 3, 2021:
- 11:21 PM Ticket #5165 (AlphaFold second prediction overwrites first prediction) created by
- […]
- 1:16 PM Ticket #5120 ((Various modules) Malformed docstrings) closed by
- fixed: Merged sphinx_napoleon_typehints into develop.
- 1:02 PM Ticket #5158 (Graphics driver crash, macOS 10.14.6, Radeon Vega Pro 20) closed by
- nonchimerax: Apple graphics driver crash. The Qt window toolkit used by ChimeraX …
- 12:55 PM Ticket #5156 (Graphics driver crash, macOS 11.3.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple graphics driver crash.
- 12:49 PM Ticket #5155 (Crash in Qt event loop) closed by
- can't reproduce: Crashed in the Qt event loop. No clues why. Suspiciously there is …
- 12:44 PM Ticket #5164 (Include reference documentation) created by
- In a developer meeting I was asked to provide reference docstrings …
- 10:21 AM Ticket #5163 (mmCIF UniProt mapping not robust against '?' data) created by
- […]
- 9:11 AM Ticket #5160 (Crash in sseq.structure) closed by
- fixed: Hi Avi, Thanks for reporting this problem. We believe it is fixed in …
- 9:08 AM Ticket #5159 (Crash with trashed stack) closed by
- can't reproduce
- 8:54 AM Ticket #5162 (Support 2-character chain IDs in SEQRES) created by
- […] combined.pdb
- 6:26 AM Ticket #5160 (Crash in sseq.structure) created by
- […]
- 5:20 AM Ticket #5159 (Crash with trashed stack) created by
- […]
- 3:13 AM Ticket #5158 (Graphics driver crash, macOS 10.14.6, Radeon Vega Pro 20) created by
- […]
- 1:18 AM Ticket #5157 (PyPi dependency not installed by "devel install") created by
- […] bundle_info.xml
Sep 2, 2021:
- 11:32 PM Ticket #5156 (Graphics driver crash, macOS 11.3.1, Intel Iris Plus Graphics) created by
- […]
- 9:50 PM Ticket #5155 (Crash in Qt event loop) created by
- […]
- 7:03 PM Ticket #5136 (KeyError saving mmCIF file) closed by
- fixed: Eric, this is because after the {{{setattr #1.1/a chain chain_id …
- 5:54 PM Ticket #5057 (Don't produce traceback when unable to restore new session) closed by
- fixed: I'm bumping the maxSessionVersion in bundle_info.xml now, which sort …
- 5:51 PM Ticket #5141 (Hand-drawn regions can include headers) closed by
- fixed
- 5:30 PM Ticket #5122 (Improve Tools menu categories) closed by
- fixed: Moved some tools and added some categories as per our offline …
- 5:04 PM Ticket #5152 (Crash in pyopengl numpy allocation for setting shader matrix) closed by
- can't reproduce: Crash looks like it was allocating a numpy array from the Python …
- 4:56 PM Ticket #5151 (Cannot multiply Place times "None") closed by
- duplicate: Fixed a year and a half ago. #3057
- 4:51 PM Ticket #5147 (Graphics hardware encountered an error and was reset) closed by
- duplicate: Apple graphics driver crash, same as #5146. You are using very old …
- 3:21 PM Dev2021-9-2 edited by
- (diff)
- 1:55 PM Dev2021-9-2 edited by
- (diff)
- 12:50 PM Ticket #5139 (Saved session file huge for small atomic model) closed by
- fixed: Fix applied. Will be in next daily build.
- 12:36 PM 2021-9-2 edited by
- (diff)
- 11:03 AM 2021-9-2 edited by
- (diff)
- 10:58 AM Ticket #5154 (Crash in open-folder dialog with wonky traceback output) created by
- […]
- 10:38 AM Ticket #5153 (Crash getting string representation of residue) closed by
- can't reproduce: The compiled Cython code does not directly call slot_tp_getattr_hook, …
- 9:59 AM Ticket #5149 (Crash opening PDB file) closed by
- duplicate
- 9:58 AM Ticket #5148 (Crash opening PDB file) closed by
- can't reproduce: Likely file includes non-ASCII characters, which has been fixed.
- 9:56 AM Ticket #5153 (Crash getting string representation of residue) created by
- […]
- 9:20 AM ChangeLog edited by
- (diff)
- 9:10 AM ChangeLog edited by
- (diff)
- 8:59 AM Ticket #5139 (Saved session file huge for small atomic model) reopened by
- 8:01 AM Ticket #5152 (Crash in pyopengl numpy allocation for setting shader matrix) created by
- […]
- 7:44 AM Ticket #5151 (Cannot multiply Place times "None") created by
- […]
- 12:27 AM Ticket #5150 (Unknown crash) created by
- […]
Sep 1, 2021:
- 7:16 PM Ticket #5149 (Crash opening PDB file) created by
- […]
- 7:12 PM Ticket #5148 (Crash opening PDB file) created by
- […]
- 6:13 PM Ticket #5147 (Graphics hardware encountered an error and was reset) created by
- […]
- 4:24 PM Ticket #5139 (Saved session file huge for small atomic model) closed by
- fixed: My best guess is that: 1) This session file originally predates the …
- 4:08 PM Ticket #5146 (Mac graphics crash, macOS 10.14.6, Geforce GT 750M) closed by
- nonchimerax: Crashed in Apple graphics driver. Unfortunately Apple's graphic …
- 4:03 PM Ticket #5145 (Startup openGL errors) closed by
- can't reproduce: Duplicate of #4367. Apparently a Mac Qt bug. This bug report …
- 3:43 PM Ticket #5138 (Make undocked tool windows iconify when main window iconified) closed by
- fixed: Fixed. Used the existing "ui hideFloating" command code to …
- 3:42 PM Ticket #5144 (MD Viewer: opening non-trajectory) closed by
- not a bug
- 3:17 PM Ticket #5142 (Dead tool window somehow receiving keystroke) closed by
- can't reproduce
- 1:42 PM Ticket #5146 (Mac graphics crash, macOS 10.14.6, Geforce GT 750M) created by
- […]
- 9:51 AM Ticket #5145 (Startup openGL errors) created by
- […]
- 7:20 AM Ticket #5144 (MD Viewer: opening non-trajectory) created by
- […]
- 5:52 AM Ticket #5143 (Avoid recalculating idatm_types for entire model after changes?) created by
- When working on large models (particularly those with lots of rings on …
- 5:01 AM Ticket #5142 (Dead tool window somehow receiving keystroke) created by
- […]
- 3:17 AM Ticket #5141 (Hand-drawn regions can include headers) created by
- […]
- 1:45 AM Ticket #5140 (OpenMM: Error initializing CUDA: CUDA_ERROR_UNKNOWN) created by
- […]
- 12:45 AM Ticket #5139 (Saved session file huge for small atomic model) created by
- […]
Aug 31, 2021:
- 10:24 PM Ticket #5138 (Make undocked tool windows iconify when main window iconified) created by
- […]
- 9:55 PM Ticket #3761 (Warning when quitting about WebEnginePage profile released too soon) closed by
- fixed: Fixed. Made ChimeraXHtmlView instances delete themselves on the "app …
- 8:13 PM Ticket #5137 (Toolbar appearance changed on Mac) created by
- […]
- 3:11 PM Ticket #5135 (need to register alphafold-created attributes) closed by
- fixed: Fixed. Thanks for catching this. Attributes will now be saved in …
- 1:58 PM Ticket #5136 (KeyError saving mmCIF file) created by
- […]
- 1:09 PM Ticket #5135 (need to register alphafold-created attributes) created by
- When I use alphafold match to existing chain(s) it creates various …
- 12:30 PM Ticket #5134 (Blastprotein Qt GUI breaks alphafold search) created by
- blocks #5133 AlphaFold tries to register a command and can't because …
- 10:41 AM Ticket #5133 (Blast REST service error) created by
- […]
- 9:41 AM Ticket #5131 (Graphics hardware encountered an error and was reset) closed by
- nonchimerax: Apple graphics driver crash Graphics hardware encountered an error …
- 9:40 AM Ticket #5128 (Error initializing CUDA: CUDA_ERROR_NO_DEVICE) closed by
- fixed: That's a really odd one - seems they've installed CUDA, but don't …
- 9:40 AM Ticket #5132 (Unknown crash) closed by
- can't reproduce
- 9:33 AM Ticket #5127 (Qt crash during exit) closed by
- can't reproduce
- 9:32 AM 2021-9-2 created by
- 9:31 AM DeveloperMeetings edited by
- (diff)
- 1:04 AM Ticket #5132 (Unknown crash) created by
- […]
- 12:41 AM Ticket #5131 (Graphics hardware encountered an error and was reset) created by
- […]
Aug 30, 2021:
- 6:39 PM Ticket #5130 (Paid AWS account for VR meeting server) created by
- The VR meeting server chimeraxmeeting.net is hosted by an Amazon Web …
- 5:17 PM Ticket #5129 (Graphics artifacts with silhouettes on Mac) closed by
- nonchimerax
- 4:49 PM Ticket #5126 ('view' session data is None) closed by
- limitation: Hi Randy, Thanks for checking the session. And thanks Greg, I …
- 1:45 PM Ticket #5129 (Graphics artifacts with silhouettes on Mac) created by
- […] test.png
- 1:12 PM Ticket #5128 (Error initializing CUDA: CUDA_ERROR_NO_DEVICE) created by
- […]
- 11:58 AM Ticket #5112 (AlignSeqPairArg gives sequence with incorrect polymer_type PT_NONE) closed by
- fixed: Copied StructureSeqs weren't copying polymer_type
- 11:41 AM Ticket #5127 (Qt crash during exit) created by
- […]
- 11:35 AM Ticket #5125 (RFE: scroll contour) closed by
- wontfix: It's a nice idea. But the Volume panel itself scrolls when several …
- 11:24 AM Ticket #5121 (OpenGL startup errors) closed by
- nonchimerax: ChimeraX cannot start because your Radeon graphics driver is broken. …
- 10:44 AM Ticket #5126 ('view' session data is None) created by
- […]
- 10:25 AM Ticket #5119 (Matchmaker: 'NoneType' object has no attribute 'setChecked') closed by
- can't reproduce: Hi Jonathan, Thanks for reporting this problem. I have tried various …
- 9:27 AM Ticket #5123 (Dual display crash) closed by
- duplicate: Qt 5.12
- 6:55 AM Ticket #5125 (RFE: scroll contour) created by
- […]
Aug 29, 2021:
- 10:43 PM Ticket #5124 (Crash loading OpenMM plugins) created by
- […]
- 9:36 PM Ticket #5123 (Dual display crash) created by
- […]
Aug 27, 2021:
- 6:02 PM Dev2021-9-2 edited by
- (diff)
- 5:53 PM Ticket #5122 (Improve Tools menu categories) created by
- The AlphaFold tool does not seem to belong in menu Tools / Structure …
- 5:40 PM Ticket #5115 (Crash in Python garbage collection while fetching attribute) closed by
- duplicate: This is our old friend the Python garbage collection crash. It is in …
- 5:24 PM Dev2021-9-2 edited by
- (diff)
- 5:23 PM Dev2021-9-2 created by
- 5:22 PM DeveloperMeetings edited by
- (diff)
- 4:56 PM Ticket #5121 (OpenGL startup errors) created by
- […]
- 3:42 PM Ticket #5117 (Modeller results disliked by Coot) closed by
- nonchimerax: Hi Yen-Li, ChimeraX merely makes it easy to prepare the inputs and …
- 3:40 PM Ticket #5120 ((Various modules) Malformed docstrings) created by
- While looking at what it would take to tackle this ticket …
- 1:33 PM 2021-8-26 edited by
- (diff)
- 1:30 PM Ticket #5119 (Matchmaker: 'NoneType' object has no attribute 'setChecked') created by
- […]
- 1:21 PM Ticket #5111 (Modeller sequence/structure mismatch) closed by
- fixed: Apparently fixed in the daily build.
- 1:07 PM ChangeLog edited by
- (diff)
- 12:47 PM NTTData edited by
- (diff)
- 12:44 PM NTTData edited by
- (diff)
- 12:42 PM NTTData edited by
- (diff)
- 12:42 PM NTTData edited by
- (diff)
- 12:27 PM Ticket #5118 (ChimeraX hangs if the blastprotein module can't connect) created by
- During a meeting yesterday (26 August) our infrastructure was down. …
- 12:24 PM Ticket #5116 (quick question...) closed by
- fixed: Hi Monique, A power outage took our infrastructure out yesterday. …
- 11:37 AM Ticket #5117 (Modeller results disliked by Coot) created by
- […] modeller model in coot.png
- 10:01 AM Ticket #5116 (quick question...) created by
- […]
Aug 25, 2021:
- 7:48 PM Ticket #5115 (Crash in Python garbage collection while fetching attribute) created by
- […]
- 5:57 PM Ticket #5114 (volume maximum not extending map bounds) closed by
- fixed: Fixed. The map combine operation was using Volume.region_grid() and …
- 5:52 PM Ticket #5114 (volume maximum not extending map bounds) created by
- […]
- 5:46 PM Ticket #5113 (Session depends on atomic bundle when no atomic models opened) created by
- […]
- 4:29 PM Ticket #5112 (AlignSeqPairArg gives sequence with incorrect polymer_type PT_NONE) created by
- […]
- 3:26 PM Ticket #5111 (Modeller sequence/structure mismatch) created by
- […]
- 11:20 AM Ticket #5108 (Crystal Contacts: set model menu to invalid value) closed by
- fixed: Fixed. ChimeraX unit cell tool did not start because a bug where it …
- 10:48 AM Ticket #5095 (Error closing altloc explorer tool) closed by
- fixed: Only happens with no structures open.
- 10:41 AM Ticket #5107 (Boolean attribute test produces traceback) closed by
- fixed
- 10:11 AM Ticket #5110 (Crash in set sseq.chain_id) closed by
- fixed: Hi Caitie, Thanks for getting back to me. I can indeed get 1.0 to …
- 9:55 AM Ticket #5109 (Crystal Contacts: set model menu to invalid value) closed by
- duplicate
- 9:54 AM Ticket #5109 (Crystal Contacts: set model menu to invalid value) reopened by
- 9:28 AM Ticket #5110 (Crash in set sseq.chain_id) created by
- […]
- 8:16 AM Ticket #5109 (Crystal Contacts: set model menu to invalid value) closed by
- duplicate: Duplicate of #5108
- 4:01 AM Ticket #5109 (Crystal Contacts: set model menu to invalid value) created by
- […]
- 4:00 AM Ticket #5108 (Crystal Contacts: set model menu to invalid value) created by
- […]
Aug 24, 2021:
- 5:41 PM Ticket #5104 (Problem destroying in-window status bar during session reset: wrapped ...) closed by
- duplicate: Fixed in daily build, not in 1.2.5. Duplicate #4583.
- 5:40 PM Ticket #5106 (Crash in sseq.structure) closed by
- can't reproduce: Need more info, but I just fixed a crash with sseq.structure which …
- 5:38 PM Ticket #5105 (Problem destroying in-window status bar during session reset: wrapped ...) closed by
- duplicate
- 5:38 PM Ticket #5105 (Problem destroying in-window status bar during session reset: wrapped ...) reopened by
- 5:32 PM Ticket #5107 (Boolean attribute test produces traceback) created by
- […]
- 3:12 PM Ticket #5106 (Crash in sseq.structure) created by
- […]
- 12:58 PM Ticket #5105 (Problem destroying in-window status bar during session reset: wrapped ...) closed by
- duplicate: Duplicate of #5104
- 12:55 PM Ticket #5105 (Problem destroying in-window status bar during session reset: wrapped ...) created by
- […]
- 12:55 PM Ticket #5104 (Problem destroying in-window status bar during session reset: wrapped ...) created by
- […]
- 12:47 PM Ticket #5066 (Replace compiled p7zip with binary package) closed by
- fixed: Closed by …
- 11:21 AM Ticket #5097 (Crash in sseq.structure) closed by
- fixed: The "structure sequence" wasn't being properly demoted to plain …
- 10:10 AM Ticket #5102 (Bundle ChimeraX-mmCIF has no module) closed by
- duplicate: Duplicate of #5083
- 9:42 AM 2021-8-26 created by
- 9:41 AM DeveloperMeetings edited by
- (diff)
- 9:16 AM Ticket #5098 (Crash with bad stack) closed by
- can't reproduce: Crashed in malloc in a ctypes call.
- 9:01 AM Ticket #5096 (Bad sequence association) closed by
- can't reproduce: Can't reproduce. The error is possibly the result of bad state due to …
- 8:59 AM Ticket #5094 (Dual display crash) closed by
- duplicate: Qt 5.12
- 6:45 AM Ticket #5103 (Unknown crash) created by
- […]
- 1:26 AM Ticket #5102 (Bundle ChimeraX-mmCIF has no module) created by
- […]
Aug 23, 2021:
- 11:10 PM Ticket #5101 (Crash in Nucletides using weakref set) created by
- […]
- 9:11 PM Ticket #5100 (Crash dismissing registration window) created by
- […]
- 7:06 PM Ticket #5099 (BLAST gui shows wrong database and chain when the blastprotein command ...) created by
- […]
- 5:28 PM Ticket #5098 (Crash with bad stack) created by
- […]
- 5:14 PM Ticket #5097 (Crash in sseq.structure) created by
- […] mismatch1.cxs
- 3:07 PM Ticket #5096 (Bad sequence association) created by
- […]
- 2:47 PM Ticket #5095 (Error closing altloc explorer tool) created by
- […]
- 1:37 PM Ticket #5094 (Dual display crash) created by
- […]
- 11:03 AM Ticket #5092 ("Access violation" in swap_buffers drawing status line) closed by
- can't reproduce
- 11:02 AM Ticket #5093 (Unknown crash) closed by
- can't reproduce
- 11:01 AM Ticket #5090 (Graphics crash, macOS 10.15, Geforce GT 650M) closed by
- nonchimerax
- 3:43 AM Ticket #5093 (Unknown crash) created by
- […]
- 2:14 AM Ticket #5092 ("Access violation" in swap_buffers drawing status line) created by
- […]
Aug 22, 2021:
Aug 21, 2021:
Aug 20, 2021:
- 6:41 PM Ticket #5087 ("Access violation" filtering Collection) closed by
- fixed
- 3:05 PM Ticket #5088 (Github Actions: Ubuntu 20.04 build fails on first curl) created by
- I'm currently testing continuous integration and in the process …
- 9:14 AM Ticket #5082 (Crash with bad stack) closed by
- can't reproduce
- 7:03 AM Ticket #5087 ("Access violation" filtering Collection) created by
- […]
- 6:39 AM Ticket #5086 (Improve attribute-registration error reporting) created by
- […]
- 5:16 AM Ticket #5085 (ISOLDE: wrapped C/C++ object of type QTableWidget has been deleted) created by
- […]
- 2:45 AM Ticket #5080 (Show UniProt name in Blast AlphaFold results table) closed by
- fixed
- 2:30 AM Ticket #5084 (OpenMM 7.6) created by
- […]
- 2:25 AM Ticket #5077 ("Access violation" fetching BLAST PDB info) closed by
- fixed: Should be fixed by …
- 2:03 AM Ticket #5081 (Blast protein: Internal Server Error) closed by
- can't reproduce: Restarted webservices at some point between this being opened and me …
Aug 19, 2021:
- 10:44 PM Ticket #5083 (Bundle ChimeraX-mmCIF has no module) created by
- […]
- 10:42 PM Ticket #5082 (Crash with bad stack) created by
- […]
- 8:08 PM Ticket #5081 (Blast protein: Internal Server Error) created by
- […]
- 4:36 PM Ticket #5080 (Show UniProt name in Blast AlphaFold results table) created by
- […]
- 3:26 PM Ticket #5077 ("Access violation" fetching BLAST PDB info) reopened by
- 2:54 PM Dev2021-8-19 edited by
- (diff)
- 2:46 PM Dev2021-8-19 edited by
- (diff)
- 2:46 PM Dev2021-8-19 edited by
- (diff)
- 12:13 PM Dev2021-8-19 edited by
- (diff)
- 12:05 PM 2021-8-19 edited by
- (diff)
- 12:00 PM 2021-8-19 edited by
- (diff)
- 11:25 AM 2021-8-19 edited by
- (diff)
- 11:14 AM 2021-8-19 edited by
- (diff)
- 9:21 AM Ticket #5079 (Long atom spec crashes ChimeraX) closed by
- duplicate: Duplicate of #4842
- 9:17 AM Ticket #5078 ("Access violation" reading PDB file) closed by
- can't reproduce
- 9:16 AM Ticket #5077 ("Access violation" fetching BLAST PDB info) closed by
- can't reproduce
- 4:36 AM Ticket #5079 (Long atom spec crashes ChimeraX) created by
- […]
Aug 18, 2021:
- 10:15 AM Ticket #5078 ("Access violation" reading PDB file) created by
- […]
- 9:08 AM Ticket #5077 ("Access violation" fetching BLAST PDB info) created by
- […]
- 7:38 AM Ticket #5076 (Startup error on Windows 7) closed by
- limitation
- 12:42 AM Ticket #5072 ("Access violation" reading mmCIF in script) closed by
- duplicate: Duplicate of #5073.
- 12:41 AM Ticket #5074 ("Access violation" reading mmCIF in script) closed by
- duplicate: Duplicate of #5073.
- 12:30 AM Ticket #5073 ("Access violation" reading mmCIF 1d3g) closed by
- fixed: This bug due to an file reading optimization on Windows that fails …
Aug 17, 2021:
- 11:50 PM Ticket #5076 (Startup error on Windows 7) created by
- […]
- 6:53 PM Ticket #5075 ("Access violation" getting StructureDatas._graphics_changeds) closed by
- can't reproduce: Same crash is #4530 in ChimeraX 1.1 where it was simply opening an …
- 2:14 PM Ticket #5071 (AddH stripping protons from water near metal) closed by
- fixed: Actually search for metal coordinations instead of trusting that …
- 1:35 PM Ticket #5075 ("Access violation" getting StructureDatas._graphics_changeds) created by
- […]
- 10:30 AM 2021-8-19 edited by
- (diff)
- 10:29 AM Dev2021-8-19 created by
- 10:27 AM 2021-8-19 created by
- 10:25 AM DeveloperMeetings edited by
- (diff)
- 9:13 AM Ticket #5070 (Crash at startup in rapid_access_shown, Linux) closed by
- can't reproduce
- 9:12 AM Ticket #5069 (Unable to open file for writing PDB) closed by
- not a bug
- 9:09 AM Ticket #5068 (Unknown error) closed by
- not a bug
- 9:08 AM Ticket #5067 (Crash in Qt on exit) closed by
- can't reproduce: Dual displays
- 9:05 AM Ticket #5065 (Crash in garbage collection during new-object allocation) closed by
- can't reproduce: Hi Ryan, We have never been able to reproduce this problem, but we …
- 9:00 AM Ticket #5074 ("Access violation" reading mmCIF in script) created by
- […]
- 7:35 AM Ticket #5073 ("Access violation" reading mmCIF 1d3g) created by
- […]
- 5:33 AM Ticket #5072 ("Access violation" reading mmCIF in script) created by
- […]
- 4:07 AM Ticket #5071 (AddH stripping protons from water near metal) created by
- […]
- 3:04 AM Ticket #5070 (Crash at startup in rapid_access_shown, Linux) created by
- […]
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