Opened 4 years ago

Closed 3 years ago

#5083 closed defect (can't reproduce)

Bundle ChimeraX-mmCIF has no module

Reported by: chimerax-bug-report@… Owned by: Greg Couch
Priority: normal Milestone:
Component: Tool Shed Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Windows-10-10.0.18362
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> isolde start

> set selectionWidth 4

Done loading forcefield  

> open 6mhz

Traceback (most recent call last):  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 324, in interceptRequest  
self._callback(info)  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 85, in _intercept  
return interceptor(request_info, *args)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\help_viewer\tool.py",
line 319, in intercept  
chimerax_intercept(request_info, *args, session=self.session,  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 453, in chimerax_intercept  
session.ui.thread_safe(defer, session, qurl.url(no_formatting), from_dir)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 366,
in thread_safe  
func(*args, **kw)  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 444, in defer  
cxcmd(session, topic)  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 462, in cxcmd  
run(session, cmd)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\run.py",
line 36, in run  
results = command.run(text, log=log, return_json=return_json)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\cli.py",
line 2852, in run  
result = ci.function(session, **kw_args)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\open_command\cmd.py",
line 71, in cmd_open  
provider_args = mgr.fetch_args(fetches[0][1], format_name=fetches[0][2])  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\open_command\manager.py", line 168, in fetch_args  
args.update(provider_info.bundle_info.run_provider(self.session,  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 378, in run_provider  
api = self._get_api(session.logger)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 489, in _get_api  
m = self.get_module()  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 461, in get_module  
raise ToolshedError("Bundle %s has no module" % self.name)  
chimerax.core.toolshed.ToolshedError: Bundle ChimeraX-mmCIF has no module  
  
chimerax.core.toolshed.ToolshedError: Bundle ChimeraX-mmCIF has no module  
  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 461, in get_module  
raise ToolshedError("Bundle %s has no module" % self.name)  
  
See log for complete Python traceback.  
  

> open 6mhz

Traceback (most recent call last):  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\cmd_line\tool.py", line
280, in execute  
cmd.run(cmd_text)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\cli.py",
line 2852, in run  
result = ci.function(session, **kw_args)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\open_command\cmd.py",
line 71, in cmd_open  
provider_args = mgr.fetch_args(fetches[0][1], format_name=fetches[0][2])  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\open_command\manager.py", line 168, in fetch_args  
args.update(provider_info.bundle_info.run_provider(self.session,  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 378, in run_provider  
api = self._get_api(session.logger)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 489, in _get_api  
m = self.get_module()  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 461, in get_module  
raise ToolshedError("Bundle %s has no module" % self.name)  
chimerax.core.toolshed.ToolshedError: Bundle ChimeraX-mmCIF has no module  
  
chimerax.core.toolshed.ToolshedError: Bundle ChimeraX-mmCIF has no module  
  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 461, in get_module  
raise ToolshedError("Bundle %s has no module" % self.name)  
  
See log for complete Python traceback.  
  

> open 6mhz

Traceback (most recent call last):  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\cmd_line\tool.py", line
280, in execute  
cmd.run(cmd_text)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\cli.py",
line 2852, in run  
result = ci.function(session, **kw_args)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\open_command\cmd.py",
line 71, in cmd_open  
provider_args = mgr.fetch_args(fetches[0][1], format_name=fetches[0][2])  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\open_command\manager.py", line 168, in fetch_args  
args.update(provider_info.bundle_info.run_provider(self.session,  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 378, in run_provider  
api = self._get_api(session.logger)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 489, in _get_api  
m = self.get_module()  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 461, in get_module  
raise ToolshedError("Bundle %s has no module" % self.name)  
chimerax.core.toolshed.ToolshedError: Bundle ChimeraX-mmCIF has no module  
  
chimerax.core.toolshed.ToolshedError: Bundle ChimeraX-mmCIF has no module  
  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 461, in get_module  
raise ToolshedError("Bundle %s has no module" % self.name)  
  
See log for complete Python traceback.  
  

> lighting simple

> set bgColor white

> set silhouettes true

> open 6mhz

Traceback (most recent call last):  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 324, in interceptRequest  
self._callback(info)  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 85, in _intercept  
return interceptor(request_info, *args)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\help_viewer\tool.py",
line 319, in intercept  
chimerax_intercept(request_info, *args, session=self.session,  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 453, in chimerax_intercept  
session.ui.thread_safe(defer, session, qurl.url(no_formatting), from_dir)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 366,
in thread_safe  
func(*args, **kw)  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 444, in defer  
cxcmd(session, topic)  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 462, in cxcmd  
run(session, cmd)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\run.py",
line 36, in run  
results = command.run(text, log=log, return_json=return_json)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\cli.py",
line 2852, in run  
result = ci.function(session, **kw_args)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\open_command\cmd.py",
line 71, in cmd_open  
provider_args = mgr.fetch_args(fetches[0][1], format_name=fetches[0][2])  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\open_command\manager.py", line 168, in fetch_args  
args.update(provider_info.bundle_info.run_provider(self.session,  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 378, in run_provider  
api = self._get_api(session.logger)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 489, in _get_api  
m = self.get_module()  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 461, in get_module  
raise ToolshedError("Bundle %s has no module" % self.name)  
chimerax.core.toolshed.ToolshedError: Bundle ChimeraX-mmCIF has no module  
  
chimerax.core.toolshed.ToolshedError: Bundle ChimeraX-mmCIF has no module  
  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 461, in get_module  
raise ToolshedError("Bundle %s has no module" % self.name)  
  
See log for complete Python traceback.  
  

> open 6mhz

Traceback (most recent call last):  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 324, in interceptRequest  
self._callback(info)  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 85, in _intercept  
return interceptor(request_info, *args)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\help_viewer\tool.py",
line 319, in intercept  
chimerax_intercept(request_info, *args, session=self.session,  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 453, in chimerax_intercept  
session.ui.thread_safe(defer, session, qurl.url(no_formatting), from_dir)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 366,
in thread_safe  
func(*args, **kw)  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 444, in defer  
cxcmd(session, topic)  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 462, in cxcmd  
run(session, cmd)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\run.py",
line 36, in run  
results = command.run(text, log=log, return_json=return_json)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\cli.py",
line 2852, in run  
result = ci.function(session, **kw_args)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\open_command\cmd.py",
line 71, in cmd_open  
provider_args = mgr.fetch_args(fetches[0][1], format_name=fetches[0][2])  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\open_command\manager.py", line 168, in fetch_args  
args.update(provider_info.bundle_info.run_provider(self.session,  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 378, in run_provider  
api = self._get_api(session.logger)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 489, in _get_api  
m = self.get_module()  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 461, in get_module  
raise ToolshedError("Bundle %s has no module" % self.name)  
chimerax.core.toolshed.ToolshedError: Bundle ChimeraX-mmCIF has no module  
  
chimerax.core.toolshed.ToolshedError: Bundle ChimeraX-mmCIF has no module  
  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 461, in get_module  
raise ToolshedError("Bundle %s has no module" % self.name)  
  
See log for complete Python traceback.  
  

> open 6mhz

Traceback (most recent call last):  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\cmd_line\tool.py", line
280, in execute  
cmd.run(cmd_text)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\cli.py",
line 2852, in run  
result = ci.function(session, **kw_args)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\open_command\cmd.py",
line 71, in cmd_open  
provider_args = mgr.fetch_args(fetches[0][1], format_name=fetches[0][2])  
File "D:\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\open_command\manager.py", line 168, in fetch_args  
args.update(provider_info.bundle_info.run_provider(self.session,  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 378, in run_provider  
api = self._get_api(session.logger)  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 489, in _get_api  
m = self.get_module()  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 461, in get_module  
raise ToolshedError("Bundle %s has no module" % self.name)  
chimerax.core.toolshed.ToolshedError: Bundle ChimeraX-mmCIF has no module  
  
chimerax.core.toolshed.ToolshedError: Bundle ChimeraX-mmCIF has no module  
  
File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
line 461, in get_module  
raise ToolshedError("Bundle %s has no module" % self.name)  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 460.89
OpenGL renderer: GeForce GTX 1060/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Alienware
Model: Alienware 17 R4
OS: Microsoft Windows 10 家庭版 (Build 18363)
Memory: 17,042,751,488
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-7700HQ CPU @ 2.80GHz
OSLanguage: zh-CN
Locale: ('en_US', 'cp936')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.12.5
    cftime: 1.5.0
    chardet: 3.0.4
    ChimeraX-AddCharge: 1.0.1
    ChimeraX-AddH: 2.1.6
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.13.2
    ChimeraX-AtomicLibrary: 3.1.3
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.5.2
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-Clipper: 0.16.0
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.2.1
    ChimeraX-CommandLine: 1.1.4
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.2.5
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.1.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.1
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.3
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.2.2
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.0.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.2.1
    ChimeraX-MDcrds: 2.2
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.3
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.0.1
    ChimeraX-ModelPanel: 1.0.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.1
    ChimeraX-OpenCommand: 1.5
    ChimeraX-PDB: 2.4.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.1
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.0.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.4
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.3.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.7.6
    ChimeraX-uniprot: 2.1
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.21
    decorator: 5.0.9
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.17
    imagecodecs: 2020.5.30
    imagesize: 1.2.0
    ipykernel: 5.3.4
    ipython: 7.18.1
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.7
    jupyter-core: 4.7.1
    kiwisolver: 1.3.1
    line-profiler: 2.1.2
    lxml: 4.6.2
    lz4: 3.1.0
    MarkupSafe: 2.0.1
    matplotlib: 3.3.2
    msgpack: 1.0.0
    netCDF4: 1.5.4
    networkx: 2.5
    numexpr: 2.7.3
    numpy: 1.19.2
    numpydoc: 1.1.0
    openvr: 1.14.1501
    packaging: 20.9
    ParmEd: 3.2.0
    parso: 0.7.1
    pickleshare: 0.7.5
    Pillow: 7.2.0
    pip: 21.0.1
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.18
    psutil: 5.7.2
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.7.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2021.1
    pywin32: 228
    pyzmq: 22.0.3
    qtconsole: 4.7.7
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.5.2
    setuptools: 50.3.2
    sfftk-rw: 0.6.7.dev1
    six: 1.15.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.2.2
    Sphinx: 3.2.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.9.3
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.25.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (3)

comment:1 by Eric Pettersen, 4 years ago

Component: Unassigned → Tool Shed
Owner: set to Greg Couch
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Bundle ChimeraX-mmCIF has no module

comment:2 by Greg Couch, 4 years ago

Still trying to figure out why this is failing. The interim solution is to remove the updated mmCIF bundle. For me, that means removing two directories:

  • C:\Users\gregc\AppData\Local\UCSF\ChimeraX\1.2\site-packages\chimerax\mmcif
  • C:\Users\gregc\AppData\Local\UCSF\ChimeraX\1.2\site-packages\ChimeraX_mmCIF-2.4.dist-info

For other users, gregc needs to be replaced by their user name.

I've also removed the bundle from the toolshed, so other users won't trip over this. If someone needs the mmCIF reading bug fix, they'll have to use the daily build.

comment:3 by Greg Couch, 3 years ago

Resolution: → can't reproduce
Status: assigned → closed
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