![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Dec 12, 2019:
- 7:26 PM Ticket #2682 (Tape measure mouse mode error on map orthoplanes) closed by
- fixed: Fixed Tape measure did not consider orthoplanes (or boxfaces) as …
- 7:07 PM Ticket #2682 (Tape measure mouse mode error on map orthoplanes) created by
- […]
- 6:53 PM Ticket #2677 (VR UI scene position is None) closed by
- fixed: Fixed. User pressed button on a VR gui panel, then while holding that …
- 6:17 PM Ticket #2678 (Probable redraw(?) hang) closed by
- can't reproduce: User typed ctrl-C apparently to the startup shell on Linux. No …
- 6:04 PM Ticket #2680 (Pressing two mouse buttons while dragging does not call mouse_up on ...) closed by
- fixed: I fixed the problem where clicking two mouse buttons causes the mode …
- 5:04 PM Ticket #2681 (Pick nearest atom in VR) created by
- From: Tristan Croll Subject: A suggestion for VR interaction Date: …
- 4:55 PM Ticket #2679 (Rotamers wrong for moved structures) closed by
- fixed: Okay, fixed now. Will be in tonight's build. --Eric
- 12:01 PM ChangeLog edited by
- (diff)
- 11:51 AM ChangeLog edited by
- (diff)
- 11:44 AM ChangeLog edited by
- (diff)
- 8:59 AM Ticket #2680 (Pressing two mouse buttons while dragging does not call mouse_up on ...) created by
- Related to this comment regarding VR tugging from Josef Lewandowski: …
- 8:53 AM Ticket #2679 (Rotamers wrong for moved structures) created by
- […] rotamer.png
- 8:47 AM ChangeLog edited by
- (diff)
- 8:11 AM Ticket #2678 (Probable redraw(?) hang) created by
- […]
- 4:29 AM Ticket #2677 (VR UI scene position is None) created by
- […]
Dec 11, 2019:
- 6:02 PM Ticket #2655 (Problem loading file-history cache at startup) closed by
- fixed: Fixed. I put in code to detect if the file history is corrupted. In …
- 4:30 PM Ticket #2676 (LabelModel not saved in sessions and/or LabelModel selectable) closed by
- fixed: Fixed. Made 2d label models save directly in sessions instead of …
- 2:01 PM Ticket #2676 (LabelModel not saved in sessions and/or LabelModel selectable) created by
- […]
- 1:41 PM Ticket #2664 (Session save fails for numpy array of strings) closed by
- wontfix: Changed traceback to say "Serializing numpy arrays of objects is not …
- 11:37 AM Ticket #2675 (KeyError in map chooser) closed by
- duplicate: Hi Shahid, Thanks for reporting this problem. It was fixed about a …
- 10:55 AM Ticket #2674 (Chromium thread crashed) closed by
- can't reproduce
Dec 10, 2019:
- 8:27 PM Ticket #2675 (KeyError in map chooser) created by
- […] Error-log.html Error-log-1.html
- 2:48 PM Ticket #2674 (Chromium thread crashed) created by
- […]
- 2:15 PM Ticket #2671 (Session save: Unable to restore objects of IHMModel class) closed by
- fixed: Made saving IHM in session warn with a popup dialog that IHM does not …
- 12:06 PM Ticket #2673 (Provide install of bundles from .whl files when Toolshed web site is down) created by
- It would be very useful if bundle .whl files could be installed in a …
- 7:02 AM Ticket #2672 (Toolshed down) created by
- […]
- 6:41 AM Ticket #2671 (Session save: Unable to restore objects of IHMModel class) created by
- […]
Dec 9, 2019:
- 6:16 PM Ticket #1029 (nucleotides undo) closed by
- fixed: Simplified code to set shown_when_atoms_hidden to false for …
- 2:04 PM Ticket #2528 (Renumbering residues) closed by
- fixed: Despite saying that I was closing this ticket 3 weeks ago, it didn't …
- 2:00 PM Ticket #2074 (Next steps: building into density) closed by
- fixed: Seemingly all the requirements of this ticket are now satisfied.
- 1:57 PM Ticket #1707 (Set atom types for residue based on dictionary) closed by
- fixed: Not fixed as per my suggestion (setting atom types based on …
- 1:49 PM Ticket #1083 (Add missing sidechains) closed by
- fixed: You can certainly now "swapaa" to the same residue type.
- 12:39 PM Ticket #2670 (VR error because scene_scale = 0) closed by
- fixed: Put in code to avoid divide by zero if scene scale becomes 0.
- 11:47 AM Ticket #2669 (Problem with hacked code: bond rotater is None) closed by
- fixed: Fixed. The error happened when the VR button is pressed and the cone …
- 11:39 AM Ticket #2670 (VR error because scene_scale = 0) created by
- […]
- 10:55 AM Ticket #2669 (Problem with hacked code: bond rotater is None) created by
- […]
- 3:38 AM Ticket #2668 (RFE: open compressed maps directly) created by
- […]
Dec 8, 2019:
- 2:53 AM Ticket #2667 (ToolShed security certificate expired) created by
- Yesterday, apparently.
Dec 6, 2019:
- 3:14 PM Ticket #2666 (Allow bond rotation mouse mode to move large size) created by
- From: "Lewandowski, Jozef" Subject: [chimerax-users] Rotate bond move …
- 11:35 AM Ticket #2665 (Read Amira segmentation files) created by
- Paul Korir has made a Python library ahds on PyPi to read Amira …
- 1:49 AM Ticket #2664 (Session save fails for numpy array of strings) created by
- […]
Dec 5, 2019:
- 7:07 PM Ticket #2663 (Crash opening IHM pdbdev 12, nuclear pore) closed by
- nonchimerax
- 7:07 PM Ticket #2663 (Crash opening IHM pdbdev 12, nuclear pore) reopened by
- 7:06 PM Ticket #2661 (Crash opening PDBDEV 12) closed by
- nonchimerax: Apple OpenGL graphics driver bug macOS Mojave, AMD Radeon Pro 575X …
- 7:05 PM Ticket #2663 (Crash opening IHM pdbdev 12, nuclear pore) closed by
- duplicate: Apple graphics driver bug. Same as #2663, but this one on macOS …
- 7:03 PM Ticket #2663 (Crash opening IHM pdbdev 12, nuclear pore) created by
- […]
- 6:56 PM Ticket #2660 (Problems with PDBDEV 12: cannot save IHMModel in session; shader does ...) closed by
- fixed: Fixed opengl bug 3.
- 6:27 PM Ticket #2662 (IHM models can't be saved in sessions.) created by
- Saving an IHM model in a session gives an error. Many IHM subclasses …
- 5:34 PM Ticket #2648 (Atom.structure_category throwing exception is awkward) closed by
- fixed: Non-atomic atoms are now in category "other".
- 4:46 PM Ticket #2661 (Crash opening PDBDEV 12) created by
- […]
- 1:14 PM Ticket #2660 (Problems with PDBDEV 12: cannot save IHMModel in session; shader does ...) created by
- […]
- 11:22 AM Ticket #2659 (Problem restoring a header sequence) closed by
- duplicate
- 10:41 AM Ticket #2657 (Basic Actions: 'None' in restored model list) closed by
- duplicate
- 7:48 AM Ticket #2659 (Problem restoring a header sequence) created by
- […]
- 2:47 AM Ticket #2658 (Ribbon 'guides' is None after session restore) created by
- […]
- 1:55 AM Ticket #2657 (Basic Actions: 'None' in restored model list) created by
- […]
- 1:51 AM Ticket #2656 (Calling session_save_pointers() on a Collection crashes ChimeraX) created by
- Trying to come to terms with how session save/restore works for …
- 12:33 AM Ticket #2650 (ISOLDE/OpenMM: Invoked getPositions() on a State which does not ...) closed by
- fixed: This is an old bug from 1.0b3 that has been fixed in the development …
Dec 4, 2019:
- 5:32 PM Ticket #2651 (ISOLDE/OpenMM: Invoked getPositions() on a State which does not ...) closed by
- duplicate: duplicate of #2650
- 4:38 PM Ticket #2655 (Problem loading file-history cache at startup) created by
- […] ChimeraX_brokenpref.zip
- 4:30 PM Ticket #2654 (Add subcommand documentation from bundles to doc index) created by
- Currently command documentation in toolshed bundles is merged into the …
- 4:23 PM Ticket #2653 (Provide documentation from toolshed bundles online) created by
- If I add a bundle to the toolshed that includes documentation for a …
- 3:48 PM Ticket #2652 (ISOLDE: using deleted 'session' attribute of dead Structure) created by
- […]
- 3:43 PM Ticket #2651 (ISOLDE/OpenMM: Invoked getPositions() on a State which does not ...) created by
- […]
- 3:22 PM Ticket #2650 (ISOLDE/OpenMM: Invoked getPositions() on a State which does not ...) created by
- […]
- 3:13 PM Ticket #2649 (Toolshed details does not display http link markup correctly.) created by
- In the details section of a bundle on the Toolshed web page having two …
- 2:48 PM Ticket #2645 (Make locating missing volume files when opening session easier) closed by
- fixed: Fixed. When you locate a missing image files when opening a session …
- 2:08 PM Ticket #2644 (Memory error computing surface for marker set) closed by
- not a bug: Tried to surface markers with huge bounds. User does not realize a …
- 2:07 PM Ticket #2648 (Atom.structure_category throwing exception is awkward) created by
- […] test.cmm
- 1:55 PM Ticket #2647 (Updated ChimeraX but not ISOLDE) created by
- […]
- 1:26 PM Ticket #2646 (Problem starting ISOLDE: cannot import name 'Symmetry_Manager' from ...) created by
- […]
- 1:14 PM Ticket #2641 (Rotamers assigns bfactor zero when >1 rotamer incorporated) closed by
- fixed
- 12:53 PM Ticket #2645 (Make locating missing volume files when opening session easier) created by
- […]
- 7:14 AM Ticket #2644 (Memory error computing surface for marker set) created by
- […]
Dec 3, 2019:
- 5:58 PM ChangeLog edited by
- (diff)
- 5:23 PM Ticket #2643 (RFE: report phi, psi when "swapaa interactive" is used) closed by
-
fixed:
swapaa interactivenow takes the samelogoption asswapaadoes, … - 4:27 PM Ticket #2643 (RFE: report phi, psi when "swapaa interactive" is used) created by
- Experiments suggest that only "swapaa" (not "swapaa interactive") …
- 3:23 PM Ticket #2642 (Session restore error) created by
- […] SspB2019.cxs
- 12:30 PM Ticket #2641 (Rotamers assigns bfactor zero when >1 rotamer incorporated) created by
- I was going through the tutorial and noticed my bfactor coloring was …
- 12:15 PM Ticket #2633 (Problem updating pseudobond labels) closed by
- fixed: Fixed. Made label code look for deleted labels when rebuilding graphics.
- 11:43 AM Ticket #2635 (self._positions is None) closed by
- not a bug: I don't see anything to do here.
- 11:41 AM Ticket #2637 (Surface capping: Array argument has non-numeric values) closed by
- duplicate: Fixed 4 months ago. There was only 1 day's daily build that had this …
- 11:24 AM Ticket #2636 (Cannot comment on long tickets via wiki) closed by
- wontfix: Basically a limitation of Trac. In such cases, you need to pare down …
- 11:23 AM Ticket #2640 (Preference GUI not refreshed) created by
- […]
- 11:14 AM Ticket #2639 (Make a 2-person VR how-to tutorial video) created by
- Make an augmented reality video showing how to start a two person VR …
- 11:03 AM Ticket #2638 (Make session save prune unsavable objects) created by
- […]
- 9:44 AM Ticket #2637 (Surface capping: Array argument has non-numeric values) created by
- […]
- 3:47 AM Ticket #2636 (Cannot comment on long tickets via wiki) created by
- A bug report on the bug reporter... how meta. :) Trying to follow up …
- 3:24 AM Ticket #2635 (self._positions is None) created by
- […]
- 12:22 AM Ticket #2634 (Crash clicking help-browser link) created by
- […]
Dec 2, 2019:
- 5:56 PM Ticket #2633 (Problem updating pseudobond labels) created by
- […]
- 5:55 PM Ticket #2630 (Continuous clash monitoring: wrong # of args) closed by
- fixed
- 5:15 PM Ticket #2631 ('torsion' command buggy) closed by
- fixed
- 4:51 PM Ticket #2632 (Volume color, ValueError: The truth value of an array with more than ...) closed by
- fixed: Fixed. The usual non-sense comparing a tuple to a numpy array gave …
- 4:24 PM Ticket #2632 (Volume color, ValueError: The truth value of an array with more than ...) created by
- […]
- 1:41 PM Ticket #2629 (parent model needs explicit test against None) closed by
- fixed: Fixed. You are really asking for problems adding len() method …
- 1:33 PM Ticket #2623 (Crash in graphics driver (chrome backend?) after ctypes call) closed by
- nonchimerax: Apple graphics driver crash rendering scene with 12 Gbytes of memory …
- 1:17 PM Ticket #2631 ('torsion' command buggy) created by
- […]
- 12:53 PM Ticket #2628 (Unknown crash) closed by
- duplicate: Duplicate of #2626
- 12:52 PM Ticket #2627 (Unknown crash) closed by
- duplicate: Duplicate of #2626
- 12:38 PM Ticket #2630 (Continuous clash monitoring: wrong # of args) created by
- […]
- 6:55 AM Ticket #2629 (parent model needs explicit test against None) created by
- […]
Nov 30, 2019:
- 10:01 PM Ticket #2628 (Unknown crash) created by
- […]
- 7:07 PM Ticket #2627 (Unknown crash) created by
- […]
- 7:05 PM Ticket #2626 (Unknown crash) created by
- […]
Nov 29, 2019:
- 11:44 PM Ticket #2622 (Linux dynamic linking problem) closed by
- nonchimerax: My output of "objdump -p /usr/lib64/libdbus-1.so.3" is mostly the …
Nov 28, 2019:
- 5:57 AM Ticket #2625 (Problems with dependency version specifiers when uploading to Tool Shed) created by
- Just trying to upload a new ISOLDE build to the Tool Shed (to correct …
- 2:04 AM Ticket #2624 (Waking from sleep takes 20 or more seconds.) created by
- […]
- 12:10 AM Ticket #2623 (Crash in graphics driver (chrome backend?) after ctypes call) created by
- […]
Nov 27, 2019:
- 4:26 PM Ticket #2621 (deleting scraggly parts of models from Modeller gives Error processing ...) closed by
- fixed: The association info was being updated on a piecemeal basis, so it …
- 2:42 PM Ticket #1228 (Run Modeller) closed by
- fixed
- 2:03 PM Ticket #2622 (Linux dynamic linking problem) created by
- […]
- 12:46 PM Ticket #2620 (Sequence viewer using deleted residues) closed by
- fixed: Was fixed in October, but the fix only helps new sessions, since …
- 12:05 PM Ticket #2621 (deleting scraggly parts of models from Modeller gives Error processing ...) created by
- open 3bp5 open uniprot:pdcd1_human sequence associate /A pdcd1_human …
- 11:52 AM Ticket #2620 (Sequence viewer using deleted residues) created by
- […] model-pdl-fig.cxs
- 9:53 AM Ticket #2619 (trying to open GLTF: ImportError: cannot import name 'surface' from ...) closed by
- fixed: Fixed. GLTF code was importing surface module which moved about a …
- 9:04 AM Ticket #2619 (trying to open GLTF: ImportError: cannot import name 'surface' from ...) created by
- I was trying to see if GLTF would save/restore colors of blobs colored …
Nov 26, 2019:
- 5:52 PM Ticket #2618 (Web page to release bundles on Tool Shed is broken) created by
- The web page to release bundles on the Tool Shed …
- 3:29 PM Ticket #2617 (Bundle builder cannot install PyPi dependency pyrealsense2) closed by
- fixed
- 11:01 AM Ticket #2617 (Bundle builder cannot install PyPi dependency pyrealsense2) created by
- How do I add a PyPi dependency to a Toolshed bundle? I have not been …
Nov 25, 2019:
- 7:04 PM Ticket #2613 (Sessions + Basic Actions + Objects == buggy) closed by
- fixed: restore_snapshot for MolecularSurface wasn't returning the restored …
- 5:45 PM Ticket #2615 (Save image: width/height and/or max_size is None) closed by
- fixed: Fixed. Forgot that the width/height of an image when not specified …
- 5:30 PM Ticket #2616 (Error in handling of multi-crystal MTZ files) created by
- […]
- 5:23 PM Ticket #2615 (Save image: width/height and/or max_size is None) created by
- […]
- 2:58 PM Ticket #2610 (Problem with .py files in file history) closed by
- not a bug: If you want to open a Python script more than once, it is convenient …
- 2:45 PM Ticket #2606 (Save image: Frame buffer invalid size) closed by
- not a bug: Issue simple error message when maximum image size is exceeded. save …
- 2:01 PM Ticket #2612 (Side view: self.view.render is None) closed by
- can't reproduce: Unable to reproduce with current code. OpenGL context management has …
- 1:36 PM Ticket #2614 (Segger not being installed on Linux) closed by
- fixed: Fixed in tonight's ChimeraX builds. The Makefile had some …
- 1:35 PM Ticket #2614 (Segger not being installed on Linux) created by
- Begin forwarded message: From: WERNERT Florian Subject: …
- 12:59 PM WikiStart edited by
- (diff)
- 12:01 PM Ticket #2613 (Sessions + Basic Actions + Objects == buggy) created by
- […] H1plusABchimerax.cxs
- 11:03 AM Ticket #2609 (Insufficient info when session save fails) closed by
- duplicate: Hopefully fixed by changes made in September. The reporting ChimeraX …
- 10:56 AM Ticket #2607 (Save image: Frame buffer invalid size) closed by
- duplicate: Duplicate of #2606
- 7:23 AM Ticket #2612 (Side view: self.view.render is None) created by
- […]
- 5:42 AM Ticket #2611 (mmCIF: local variable '_1to3' referenced before assignment) closed by
- fixed: Old bug from ChimeraX 0.9 release.
- 4:04 AM Ticket #2611 (mmCIF: local variable '_1to3' referenced before assignment) created by
- […]
- 1:20 AM Ticket #2610 (Problem with .py files in file history) created by
- […]
- 12:43 AM Ticket #2571 (No mail/feedback) reopened by
- If you bring up the Windows Event Viewer, do you see any events …
Nov 24, 2019:
Nov 23, 2019:
- 2:30 PM Ticket #2607 (Save image: Frame buffer invalid size) created by
- […]
- 2:29 PM Ticket #2606 (Save image: Frame buffer invalid size) created by
- […]
Nov 22, 2019:
- 4:34 PM ChangeLog edited by
- (diff)
- 4:14 PM Ticket #2604 (Make surface coloring undoable) closed by
- fixed: Done. Made the color command on models and surfaces, color …
- 4:11 PM Ticket #2604 (Make surface coloring undoable) created by
- Make the color command colorings of surface undoable.
- 12:32 PM Ticket #2603 (Fragmented surface after adding hydrogens) closed by
- fixed: Fixed. The show command didn't properly handle the case where adding …
- 11:28 AM Ticket #2603 (Fragmented surface after adding hydrogens) created by
- […] image1.png
- 7:35 AM Ticket #1972 (Structure factor .cif files: open command extension/disambiguation) closed by
- fixed: Seems all of this is working nicely now.
- 7:34 AM Ticket #1913 (Clipper: name '_f_sigf_chooser' is not defined) closed by
- fixed
- 7:12 AM Ticket #1874 (ISOLDE: isolde/libmolc.so: undefined symbol) closed by
- wontfix: Tidying up open tickets. While one could argue that the …
- 7:06 AM Ticket #1643 (FastVolumeSurface class not restorable) closed by
- fixed: Clipper and ISOLDE no longer break session saving (note - they don't …
- 7:05 AM Ticket #1637 (ISOLDE installation: UnicodeDecodeError) closed by
- fixed: Cleaning up old tickets - this issue is long since fixed.
- 7:04 AM Ticket #1439 (Ability to spawn secondary View instance(s)) closed by
- wontfix: Rob Oeffner in the lab here is working on a WebGL-based reflection …
- 7:01 AM Ticket #1270 (pbm running ISOLDE (OpenMM)) closed by
- fixed: Just cleaning up old tickets!
- 6:59 AM Ticket #2458 (Clipper not saving in sessions) closed by
- duplicate: Duplicate of #2539
- 6:58 AM Ticket #2538 (Clipper not saving in sessions) closed by
- duplicate
- 6:57 AM Ticket #2539 (Clipper prevents session saving) closed by
- fixed: The latest versions of Clipper and ISOLDE no longer cause crashes on …
Nov 21, 2019:
- 6:23 PM Ticket #2602 (View command includes vr room camera) created by
- […]
- 5:24 PM Ticket #2601 (KeyError in model chooser) closed by
- duplicate: Multiple fixes have occurred since this version of ChimeraX
- 5:18 PM Ticket #2594 (Crash opening model) closed by
- duplicate: Hi Lynette, Thanks for the info. From the behavior you describe and …
- 5:01 PM Ticket #2601 (KeyError in model chooser) created by
- […]
- 4:56 PM Ticket #2600 (Problem with "toolshed show") created by
- The first thing "toolshed show" does is to look for existing matching …
- 4:50 PM Ticket #2595 (problem with 'view' centering in ortho mode) closed by
- fixed: Fixed. In my test the behavior you observed was to be expected. …
- 4:43 PM ChangeLog edited by
- (diff)
- 4:23 PM Ticket #2571 (No mail/feedback) closed by
- worksforme: Still no response to last update of #2540. Sent email as myself …
- 4:12 PM Ticket #2599 ("select pyrimidine" doesn't select anything) created by
- Repeat by opening 1bna. "select purine" works, "select pyrimidine" …
- 3:49 PM Ticket #2590 (Make "view cofr true" use center-of-view) closed by
- fixed: Fixed. Made view command set "center of view" rotation method if …
- 12:39 PM Ticket #2596 (Problem with BlobOutlineBox in sessions) closed by
- fixed: Fixed. Pick blob outline box model did not have session saving support.
- 12:13 PM Ticket #2598 (New Model classes often break session saving) created by
- […]
- 11:12 AM Ticket #2585 (Excessive Windows compiler output for atomic) closed by
- fixed: Did what I felt I could. If there are further specific suggestions …
- 8:10 AM Ticket #2597 (Toolshed unwanted version downgrade on Windows) created by
- […]
- 7:02 AM Ticket #2596 (Problem with BlobOutlineBox in sessions) created by
- […]
- 1:22 AM Ticket #2587 (6pkv connectivity) closed by
- nonchimerax: It's a bug in the mmCIF file. The file says that those two residues …
- 12:59 AM Ticket #2595 (problem with 'view' centering in ortho mode) created by
- […]
Nov 20, 2019:
- 4:47 PM Ticket #2594 (Crash opening model) created by
- […]
- 2:20 PM Ticket #2593 (Various graphics/install/toolshed problems) created by
- […]
- 1:52 PM Ticket #2592 (Can't install ISOLDE for everyone) created by
- […] install_error.txt
- 11:29 AM Ticket #2591 ("view sel" fails when only bonds are selected) closed by
- fixed: Fixed. Objects.bounds() was not including bonds since usually atoms …
- 4:33 AM Ticket #2591 ("view sel" fails when only bonds are selected) created by
- […]
- 4:31 AM Ticket #2574 ('usage' on an alias fails) closed by
-
not a bug: My bad. Forgot I needed to add the alias to
register_command()in … - 3:54 AM Ticket #2590 (Make "view cofr true" use center-of-view) created by
- […]
- 3:26 AM Ticket #2588 (Wrong version of Clipper (duplicate of #2214)) closed by
- duplicate: Duplicate of #2214.
- 3:18 AM Ticket #2589 (Basic Clipper session restore) created by
- […]
Nov 19, 2019:
- 5:34 PM Ticket #2588 (Wrong version of Clipper (duplicate of #2214)) created by
- […]
- 3:33 PM Ticket #2488 (AddH: treat UNK as truncated amino acid) closed by
- fixed: Okay, implemented.
- 2:38 PM Ticket #2587 (6pkv connectivity) created by
- In entry 6pkv, the mmCIF makes some missing structure into covalent …
- 1:35 PM Ticket #2297 (Showing all tools suppressed during global tool hide) closed by
- fixed: Okay, AFAICT all the concerns in this ticket and #2404 are addressed.
- 11:32 AM Ticket #2478 (CCD templates should us different XYZ fields) closed by
- fixed: Didn't read the ideal PDB coordinates into the separate variables that …
- 11:26 AM Ticket #2478 (CCD templates should us different XYZ fields) reopened by
- The code is designed to fallback to the experimental coordinates if …
- 5:18 AM Ticket #2586 (fmt.category is a set) created by
- […]
Nov 18, 2019:
- 4:39 PM Ticket #2585 (Excessive Windows compiler output for atomic) created by
- […] make_atomic.txt
- 3:58 PM Ticket #2584 (bounds determination: zero-size array to reduction operation minimum ...) closed by
- fixed: Fixed. I couldn't reproduce the error. But I can see how it could …
- 12:30 PM Ticket #2584 (bounds determination: zero-size array to reduction operation minimum ...) created by
- […]
- 11:59 AM Ticket #2583 ("surface zone" maxComponents broken?) closed by
- fixed: Fixed. Sharp edge surface triangulation was not being handled …
- 11:18 AM Ticket #2583 ("surface zone" maxComponents broken?) created by
- From the following: open 2gbp surf surf zone #1 near ligand dist 6 …
- 10:39 AM Ticket #2582 (Non-ASCII to log produces error) closed by
- fixed: I believe this was fixed on August 13th by …
- 10:34 AM MSC2019Deliverables edited by
- (diff)
- 10:32 AM Ticket #2581 (color comparison: numpy stupidity) closed by
- fixed: atom.color until recently returned a tinyarray. Those don't support …
- 10:11 AM Ticket #2569 (Scroll ViewDockX table to show active row) closed by
- fixed
- 9:03 AM Ticket #2582 (Non-ASCII to log produces error) created by
- […]
Nov 16, 2019:
Nov 15, 2019:
- 4:25 PM Ticket #2578 (Crash in (PyOpenGL-invoked?) shader code) closed by
- nonchimerax: This is a typical Mac graphics driver crash due to buggy Apple …
- 3:08 PM Ticket #2564 (atom.color[:3] NotImplementedError: Slices are not implemented.) closed by
- fixed: Returning a tinyarray had the upside of being able to be compared to a …
- 8:12 AM Ticket #2580 (Volume bounding box should contract with background) created by
- […]
- 8:11 AM Ticket #2579 (Shell broken if created while Volume Viewer context menu is posted) created by
- […]
Nov 14, 2019:
- 10:50 PM Ticket #2578 (Crash in (PyOpenGL-invoked?) shader code) created by
- […]
- 10:09 PM Ticket #2563 (ViewdockX clashes button broken, needs to be updated for new syntax) closed by
- fixed: Fixed in b94b4e6be.
- 5:55 PM Ticket #2577 (Model whose ID is None being sorted by ID during model removal) closed by
- fixed: Fixed. Closing map eraser tool window after the eraser sphere model …
- 4:49 PM Ticket #2576 (Volume Eraser: output array is read-only) closed by
- duplicate: This ChimeraX bug using Volume Eraser was fixed 3 months ago. Update …
- 4:41 PM Ticket #2577 (Model whose ID is None being sorted by ID during model removal) created by
- […]
- 4:29 PM Ticket #2576 (Volume Eraser: output array is read-only) created by
- […]
- 1:15 PM 2019-11-14 edited by
- (diff)
- 1:09 PM 2019-11-14 created by
- 12:14 PM DeveloperMeetings edited by
- (diff)
- 11:14 AM Ticket #2568 (Too many tools in General category) closed by
- not a bug: The plan is to pull tools into non-General categories once there is …
- 10:57 AM Ticket #2575 (incorrect error message from "open" command) created by
- I was testing whether the structurefactors option from Clipper works …
- 9:39 AM Ticket #2574 ('usage' on an alias fails) created by
- […]
- 7:55 AM Ticket #2573 (safe-save permission denied writing temp file) created by
- […]
- 6:15 AM Ticket #2572 (Atom matching occurring in input order rather than name order) created by
- […] glu.zip
- 4:57 AM Ticket #2571 (No mail/feedback) created by
- […]
- 4:49 AM Ticket #2570 (Some help files crash ChimeraX) created by
- […]
Nov 13, 2019:
- 6:28 PM Ticket #2569 (Scroll ViewDockX table to show active row) created by
- Phil wants the ViewDockX table to scroll to show the active row when …
- 6:16 PM Ticket #2568 (Too many tools in General category) created by
- […]
- 6:08 PM Ticket #2567 (Command History window shown when it shouldn't be) created by
- […]
- 9:42 AM Ticket #2566 (Can't start ChimeraX) created by
- […]
Nov 12, 2019:
- 4:14 PM Ticket #2565 (Problems using previously fetched files) created by
- […]
- 1:35 PM Ticket #2564 (atom.color[:3] NotImplementedError: Slices are not implemented.) created by
- Atom.color returns a tinyarray which does not allow slicing. ChimeraX …
- 1:29 PM Ticket #2561 (Saving marker sets: Slices are not implemented) closed by
- fixed: Fixed. Atom.color is returning a tinyarray which does not allow …
- 12:55 PM Ticket #2560 (Unexpected lighting change when volume morphing) closed by
- fixed: Fixed. Color interpolation was incorrectly using scale factors. Also …
- 11:54 AM Ticket #2563 (ViewdockX clashes button broken, needs to be updated for new syntax) created by
- The "clash" command syntax changed to be the same as "hbonds" (keyword …
- 11:53 AM Ticket #2562 (ViewdockX Hbonds/clashes needs to be smarter about which sets of atoms ...) created by
- For induced-fit results, each ligand has its own receptor …
- 11:12 AM Ticket #2559 (Session restore: 'Ring' object has no attribute '_c_pointer_ref') closed by
- fixed: Hi Valentyn, Thanks for reporting this problem. I believe it was …
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