Opened 6 years ago

Closed 6 years ago

#2591 closed defect (fixed)

"view sel" fails when only bonds are selected

Reported by: Tristan Croll Owned by: Tom Goddard
Priority: normal Milestone:
Component: General Controls Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Linux-3.10.0-957.12.2.el7.x86_64-x86_64-with-centos-7.6.1810-Core
ChimeraX Version: 0.91 (2019-11-20)
Description
The 'view' command fails when the only selected objects are bonds.

Log:
Startup Messages  
---  
warning | 'clip' is a prefix of an existing command 'clipper'  
  
UCSF ChimeraX version: 0.91 (2019-11-20)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
/run/media/tic20/storage/structure_dump/cimr/yaikhomba/sf4/SC_III_IV.pdb

Summary of feedback from opening
/run/media/tic20/storage/structure_dump/cimr/yaikhomba/sf4/SC_III_IV.pdb  
---  
warning | Ignored bad PDB record found on line 31917  
END  
notes | Combining 2 symmetry atoms into HOH /F:2001 O  
Combining 2 symmetry atoms into HOH /A:2003 O  
Combining 2 symmetry atoms into HOH /B:2001 O  
Combining 2 symmetry atoms into HOH /D:2001 O  
Combining 2 symmetry atoms into HOH /A:2001 O  
  
Chain information for SC_III_IV.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
C F | No description available  
D | No description available  
E | No description available  
U V | No description available  
X Y | No description available  
a b | No description available  
d e | No description available  
  

> style stick

Changed 31712 atom styles  

> view sel

No displayed objects specified.  

> view sel

No displayed objects specified.  




OpenGL version: 3.3.0 NVIDIA 418.87.01
OpenGL renderer: TITAN Xp/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Change History (2)

comment:1 by pett, 6 years ago

Component: UnassignedGeneral Controls
Owner: set to Tom Goddard
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submission"view sel" fails when only bonds are selected

comment:2 by Tom Goddard, 6 years ago

Resolution: fixed
Status: assignedclosed

Fixed.

Objects.bounds() was not including bonds since usually atoms for bonds are also included. Fixed so it does include bonds.

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