Opened 7 years ago
Closed 6 years ago
#1637 closed defect (fixed)
ISOLDE installation: UnicodeDecodeError
| Reported by: | Owned by: | Tristan Croll | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | Conrad Huang | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-7-6.1.7601-SP1
ChimeraX Version: 0.8 (2018-12-17)
Description
Installing Isolde on windows desktop.
Is thiis likely to be a Windows 7 issue?
Log:
Startup Messages
---
note | Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\\\\__init__.py", line 338, in __init__
self.init_available_from_cache(logger)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\\\\__init__.py", line 445, in
init_available_from_cache
abc.load_from_cache()
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\available.py", line 61, in load_from_cache
b = _build_bundle(d)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\available.py", line 98, in _build_bundle
bundle_d = d["bundle"][bundle_name]
KeyError: 'ChimeraX_ISOLDE'
UCSF ChimeraX version: 0.8 (2018-12-17)
How to cite UCSF ChimeraX
Downloading bundle ChimeraX_ISOLDE-1.0b2-cp36-cp36m-win_amd64.whl
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 386, in download_finished
session=self.session)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 548, in install_bundle
results = self._pip_install(bundle, per_user=per_user, reinstall=reinstall)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 845, in _pip_install
results = self._run_pip(command)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 863, in _run_pip
output = cp.stdout.decode("utf-8")
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 46:
invalid start byte
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 46:
invalid start byte
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 863, in _run_pip
output = cp.stdout.decode("utf-8")
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 391.35
OpenGL renderer: GeForce GTX 550 Ti/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Change History (4)
comment:1 by , 7 years ago
| Platform: | → all |
|---|---|
| Project: | → ChimeraX |
comment:2 by , 7 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Third Party |
| Owner: | set to |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → ISOLDE installation: UnicodeDecodeError |
comment:3 by , 7 years ago
I've put instructions on how to deal with the Unicode issue at https://isolde.cimr.cam.ac.uk/faq/#installation. Please let me know how you get on.
comment:4 by , 6 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
Cleaning up old tickets - this issue is long since fixed.
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I built ISOLDE in Windows 10 - I'm afraid I can't tell you much regarding backward compatibility.
On a separate note, I'm afraid your GPU is really going to struggle running ISOLDE's simulations.