Save image: Frame buffer invalid size

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Linux-4.4.0-169-generic-x86_64-with-debian-stretch-sid
ChimeraX Version: 0.91 (2019-06-29)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 0.91 (2019-06-29)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open Figure3-20191121.cxs

Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/session.py", line 606, in restore  
data = fdeserialize(stream)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/serialize.py", line 68, in msgpack_deserialize  
return next(stream)  
File "msgpack/_unpacker.pyx", line 562, in msgpack._cmsgpack.Unpacker.__next__  
File "msgpack/_unpacker.pyx", line 502, in msgpack._cmsgpack.Unpacker._unpack  
File "msgpack/_unpacker.pyx", line 468, in
msgpack._cmsgpack.Unpacker.read_from_file  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/gzip.py", line 276, in read  
return self._buffer.read(size)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/_compression.py", line 68, in
readinto  
data = self.read(len(byte_view))  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/gzip.py", line 469, in read  
buf = self._fp.read(io.DEFAULT_BUFFER_SIZE)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/gzip.py", line 82, in read  
return self.file.read(size)  
KeyboardInterrupt  
  
opened ChimeraX session  

> open /data/disk3/modeling/gp11/gp11-c6.mrc

Opened gp11-c6.mrc, grid size 400,400,400, pixel 1.05, shown at level
7.15e-07, step 2, values float32  

> open /data/disk3/modeling/gp17/fiber-6-fromtail-clean.mrc

Opened fiber-6-fromtail-clean.mrc, grid size 400,400,400, pixel 1.05, shown at
level 0.0121, step 2, values float32  

> open /data/disk3/modeling/WT-tail-flip-lp3.7.mrc

Opened WT-tail-flip-lp3.7.mrc, grid size 400,400,400, pixel 1.05, shown at
level 0.00984, step 2, values float32  

> open /data/disk3/modeling/gp11/gp11-6R21-c12.pdb

Chain information for gp11-6R21-c12.pdb #4  
---  
Chain | Description  
M O Q S U W | No description available  
N P R T V X | No description available  
  

> open /data/disk3/modeling/gp12/gp12-6R21-c12.pdb

Chain information for gp12-6R21-c12.pdb #5  
---  
Chain | Description  
a b c d e f | No description available  
  

> ui mousemode rightMode "translate selected models"

> ui mousemode rightMode "translate selected models"

> ui mousemode rightMode "rotate selected models"

> ~select #2

55704 atoms, 6 pseudobonds, 3 models selected  

> select #4

18192 atoms, 18516 bonds, 1 model selected  

> ~select #4

Nothing selected  

> hide #!4 models

> hide #!5 models

> hide #!3 models

> surface dust #2 size 60

> surface dust #3 size 60

> fitmap #2 inMap #3

Fit map fiber-6-fromtail-clean.mrc in map WT-tail-flip-lp3.7.mrc using 80064
points  
correlation = 0.8773, correlation about mean = 0.7513, overlap = 14.08  
steps = 232, shift = 23.3, angle = 12.6 degrees  
  
Position of fiber-6-fromtail-clean.mrc (#2) relative to WT-tail-flip-lp3.7.mrc
(#3) coordinates:  
Matrix rotation and translation  
-0.53025115 0.84784062 0.00005825 -66.70466608  
-0.84784062 -0.53025115 -0.00000950 289.40474554  
0.00002283 -0.00005442 1.00000000 -208.79759507  
Axis -0.00002649 0.00002089 -1.00000000  
Axis point 46.82204407 163.17762842 0.00000000  
Rotation angle (degrees) 122.02242567  
Shift along axis 208.80540643  
  

> fitmap #1 inMap #3

Fit map gp11-c6.mrc in map WT-tail-flip-lp3.7.mrc using 34162 points  
correlation = 1, correlation about mean = 0.9999, overlap = 6.893  
steps = 40, shift = 0.00887, angle = 0.0167 degrees  
  
Position of gp11-c6.mrc (#1) relative to WT-tail-flip-lp3.7.mrc (#3)
coordinates:  
Matrix rotation and translation  
0.99999996 -0.00029172 0.00000107 0.00010721  
0.00029172 0.99999996 -0.00000178 -0.00049737  
-0.00000107 0.00000178 1.00000000 0.00885318  
Axis 0.00608814 0.00367856 0.99997470  
Axis point 1.81662952 0.18252232 0.00000000  
Rotation angle (degrees) 0.01671456  
Shift along axis 0.00885178  
  

> select #1

2 models selected  

> ui mousemode rightMode "translate selected models"

> ui mousemode rightMode "rotate selected models"

> ui mousemode rightMode "translate selected models"

> ui mousemode rightMode "translate selected models"

> ui mousemode rightMode "rotate selected models"

> ui mousemode rightMode "translate selected models"

> ui mousemode rightMode "translate selected models"

> ui mousemode rightMode "rotate selected models"

> fitmap #1 inMap #3

Fit map gp11-c6.mrc in map WT-tail-flip-lp3.7.mrc using 34162 points  
correlation = 0.9007, correlation about mean = 0.7371, overlap = 5.544  
steps = 160, shift = 6.87, angle = 13.2 degrees  
  
Position of gp11-c6.mrc (#1) relative to WT-tail-flip-lp3.7.mrc (#3)
coordinates:  
Matrix rotation and translation  
0.86584069 0.50031982 -0.00000758 -0.00012604  
-0.50031983 0.86584069 -0.00000442 -0.00036584  
0.00000435 0.00000762 1.00000001 -0.00378080  
Axis 0.00001204 -0.00001192 -1.00000000  
Axis point -0.00074513 0.00005220 0.00000000  
Rotation angle (degrees) 30.02116119  
Shift along axis 0.00378080  
  

> surface dust #1 size 60

> surface dust #1 size 20

> surface dust #1 size 100

> ui mousemode rightMode "rotate selected models"

> fitmap #1 inMap #3

Fit map gp11-c6.mrc in map WT-tail-flip-lp3.7.mrc using 151769 points  
correlation = 0.9991, correlation about mean = 0.9921, overlap = 48.18  
steps = 88, shift = 0.555, angle = 4.73 degrees  
  
Position of gp11-c6.mrc (#1) relative to WT-tail-flip-lp3.7.mrc (#3)
coordinates:  
Matrix rotation and translation  
0.50012701 0.86595207 -0.00000564 0.00154348  
-0.86595208 0.50012701 -0.00002249 0.00822815  
-0.00001666 0.00001614 1.00000001 -0.00010829  
Axis 0.00002231 0.00000636 -1.00000000  
Axis point 0.00789873 0.00277715 0.00000000  
Rotation angle (degrees) 59.99159693  
Shift along axis 0.00010837  
  

> select clear

> show #!2 models

Empty filename passed to function  

> save session /data/disk3/modeling/gp17/Figure4-20191123.cxs

> show #!4 models

> hide #!4 models

> show #!4 models

> hide #!4 models

> show #!4 models

> hide selAtoms

> show selAtoms ribbons

> hide #!3 models

> ui mousemode rightMode "translate selected models"

> select #4

18192 atoms, 18516 bonds, 1 model selected  

> ui mousemode rightMode "rotate selected models"

> ui mousemode rightMode "translate selected models"

> ui mousemode rightMode "rotate selected models"

> ui mousemode rightMode "translate selected models"

> fitmap #4 inMap #1

Fit molecule gp11-6R21-c12.pdb (#4) to map gp11-c6.mrc (#1) using 18192 atoms  
average map value = 0.01518, steps = 124  
shifted from previous position = 6.01  
rotated from previous position = 12.5 degrees  
atoms outside contour = 5315, contour level = 0.0090288  
  
Position of gp11-6R21-c12.pdb (#4) relative to gp11-c6.mrc (#1) coordinates:  
Matrix rotation and translation  
0.86309189 0.50504689 0.00004661 -287.31962984  
-0.50504689 0.86309190 0.00002663 -75.19785285  
-0.00002678 -0.00004652 0.99999999 -210.11725627  
Axis -0.00007241 0.00007265 -0.99999999  
Axis point -282.38086122 492.31900847 0.00000000  
Rotation angle (degrees) 30.33446564  
Shift along axis 210.13259822  
  

> hide #!2 models

> surface dust #1 size 80

> surface dust #1 size 30

> surface dust #1 size 100

> hide #!4 models

> show #!4 models

> show #!2 models

> open /data/disk3/modeling/gp11/gp11-c6-clean.mrc

Opened gp11-c6-clean.mrc, grid size 400,400,400, pixel 1.05, shown at level
7.15e-07, step 2, values float32  
Must specify one map, got 0  

> fitmap #6 inMap #1

Fit map gp11-c6-clean.mrc in map gp11-c6.mrc using 38128 points  
correlation = 0.9982, correlation about mean = 0.9963, overlap = 4.833  
steps = 44, shift = 0.0159, angle = 0.0106 degrees  
  
Position of gp11-c6-clean.mrc (#6) relative to gp11-c6.mrc (#1) coordinates:  
Matrix rotation and translation  
0.49996810 -0.86604381 -0.00000624 -0.00008120  
0.86604381 0.49996810 -0.00001008 0.00012299  
0.00001185 -0.00000037 0.99999999 -0.01317997  
Axis 0.00000561 -0.00001045 1.00000000  
Axis point -0.00014695 -0.00000883 0.00000000  
Rotation angle (degrees) 60.00211010  
Shift along axis -0.01317997  
  

> hide #!1 models

> close #1

> surface dust #6 size 100

> surface dust #6 size 80

> surface dust #6 size 40

> surface dust #6 size 60

> surface dust #6 size 20

> surface dust #6 size 30

> surface dust #6 size 50

> save session /data/disk3/modeling/gp17/Figure4-20191123.cxs

> show #!3 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> set bgColor white

> lighting soft

> lighting shadows true intensity 0.5

> lighting flat

> lighting soft

> lighting simple

> lighting simple

> save session /data/disk3/modeling/gp17/Figure4-20191123.cxs

> open /home/cwang/Desktop/20191118.cxs

opened ChimeraX session  

> hide #!22 models

> show #!22 models

> hide #!22 models

> show #!22 models

> hide #!22 models

> show #!21 models

> hide #!21 models

> open /data/disk3/modeling/gp8/gp8-C12-clean.mrc

Opened gp8-C12-clean.mrc, grid size 400,400,400, pixel 1.05, shown at level
-4.87e-06, step 2, values float32  

internal error: void QXcbWindow::setNetWmStateOnUnmappedWindow() called on
mapped window  

> select #17

2 models selected  

> ui mousemode rightMode "rotate selected models"

> ui mousemode rightMode "translate selected models"

> fitmap #17 inMap #85

Fit map gp8-C12-clean.mrc in map gp8-nogenome.mrc using 280057 points  
correlation = 0.8782, correlation about mean = 0.5818, overlap = 72.86  
steps = 164, shift = 10.3, angle = 8.13 degrees  
  
Position of gp8-C12-clean.mrc (#17) relative to gp8-nogenome.mrc (#85)
coordinates:  
Matrix rotation and translation  
-0.00002169 -1.00000000 -0.00000059 210.00468976  
1.00000000 -0.00002169 -0.00000066 -209.99533091  
0.00000066 -0.00000059 1.00000000 -209.96887351  
Axis 0.00000003 -0.00000063 1.00000000  
Axis point 209.99780223 0.00233971 0.00000000  
Rotation angle (degrees) 90.00124282  
Shift along axis -209.96873469  
  

> open /data/disk3/modeling/gp11/gp11-c6-clean.mrc

Opened gp11-c6-clean.mrc, grid size 400,400,400, pixel 1.05, shown at level
7.15e-07, step 2, values float32  

> view cofr false

> ui mousemode rightMode "rotate selected models"

> ui mousemode rightMode "translate selected models"

> ui mousemode rightMode "rotate selected models"

> show #!22 models

> hide #!22 models

> show #!22 models

> hide #!22 models

> show #!22 models

> hide #!22 models

> fitmap #26 inMap #22

Fit map gp11-c6-clean.mrc in map gp11.mrc using 38128 points  
correlation = 1, correlation about mean = 1, overlap = 5.087  
steps = 120, shift = 12.3, angle = 10.2 degrees  
  
Position of gp11-c6-clean.mrc (#26) relative to gp11.mrc (#22) coordinates:  
Matrix rotation and translation  
-0.99999999 -0.00002271 0.00001262 -0.00000234  
0.00002271 -1.00000000 -0.00000181 -0.00007080  
0.00001262 -0.00000181 0.99999999 -0.00530774  
Axis 0.00000008 -0.00000285 1.00000000  
Axis point -0.00000117 -0.00003541 0.00000000  
Rotation angle (degrees) 179.99869898  
Shift along axis -0.00530774  
  

> hide #!85 models

> hide #!17 models

> show #!17 models

> hide #!58 models

> show #!58 models

> surface dust #58 size 30

> surface dust #58 size 40

> show #!23 models

> select clear

> surface dust #23 size 40

> surface dust #17 size 40

> surface dust #26 size 40

> select clear

> save session /data/disk3/modeling/Figure1-20191123.cxs

> open /data/disk3/modeling/gp17/fiber-6-fromtail-clean.mrc

Opened fiber-6-fromtail-clean.mrc, grid size 400,400,400, pixel 1.05, shown at
level 0.00641, step 2, values float32  

> select clear

> select clear

> ui mousemode rightMode "rotate selected models"

> ui mousemode rightMode "translate selected models"

> ui mousemode rightMode "translate selected models"

> ui mousemode rightMode "rotate selected models"

> surface dust #27 size 40

> fitmap #27 inMap #11

Fit map fiber-6-fromtail-clean.mrc in map fiber-6-fromtail.mrc using 80170
points  
correlation = 0.7547, correlation about mean = 0.6138, overlap = 15.82  
steps = 280, shift = 35.3, angle = 13.4 degrees  
  
Position of fiber-6-fromtail-clean.mrc (#27) relative to fiber-6-fromtail.mrc
(#11) coordinates:  
Matrix rotation and translation  
-0.53051842 -0.84767341 0.00000207 499.42036555  
0.84767339 -0.53051841 -0.00006383 143.40881128  
0.00005520 -0.00003211 0.99999999 -1.33665490  
Axis 0.00001871 -0.00003134 1.00000000  
Axis point 209.99691945 210.00568791 0.00000000  
Rotation angle (degrees) 122.04048911  
Shift along axis -1.33180568  
  

> ui mousemode rightMode "translate selected models"

> fitmap #27 inMap #11

Fit map fiber-6-fromtail-clean.mrc in map fiber-6-fromtail.mrc using 80170
points  
correlation = 0.46, correlation about mean = 0.1647, overlap = 6.721  
steps = 116, shift = 15.3, angle = 0.616 degrees  
  
Position of fiber-6-fromtail-clean.mrc (#27) relative to fiber-6-fromtail.mrc
(#11) coordinates:  
Matrix rotation and translation  
-0.53960720 -0.84191690 -0.00002177 500.12476415  
0.84191688 -0.53960718 -0.00016777 146.55459661  
0.00012950 -0.00010885 0.99999998 7.99998830  
Axis 0.00003499 -0.00008983 1.00000000  
Axis point 209.99117829 210.02138499 0.00000000  
Rotation angle (degrees) 122.65690369  
Shift along axis 8.00432056  
  

> fitmap #27 inMap #11

Fit map fiber-6-fromtail-clean.mrc in map fiber-6-fromtail.mrc using 325253
points  
correlation = 0.4764, correlation about mean = 0.1503, overlap = 42.05  
steps = 68, shift = 0.214, angle = 0.251 degrees  
  
Position of fiber-6-fromtail-clean.mrc (#27) relative to fiber-6-fromtail.mrc
(#11) coordinates:  
Matrix rotation and translation  
-0.54328377 -0.83954913 0.00006957 500.38541162  
0.83954911 -0.54328377 -0.00003064 147.79004771  
0.00006352 0.00004176 0.99999999 8.19560169  
Axis 0.00004312 0.00000360 1.00000000  
Axis point 209.99351247 210.00019069 0.00000000  
Rotation angle (degrees) 122.90746095  
Shift along axis 8.21770946  
  

> fitmap #27 inMap #11

Fit map fiber-6-fromtail-clean.mrc in map fiber-6-fromtail.mrc using 181508
points  
correlation = 0.4834, correlation about mean = 0.1213, overlap = 33.58  
steps = 120, shift = 13.5, angle = 0.0359 degrees  
  
Position of fiber-6-fromtail-clean.mrc (#27) relative to fiber-6-fromtail.mrc
(#11) coordinates:  
Matrix rotation and translation  
-0.54276197 -0.83988657 -0.00000443 500.35993543  
0.83988655 -0.54276196 -0.00000127 147.60419119  
-0.00000134 -0.00000442 0.99999999 8.42356035  
Axis -0.00000187 -0.00000184 1.00000000  
Axis point 210.00177817 210.00120872 0.00000000  
Rotation angle (degrees) 122.87185690  
Shift along axis 8.42235187  
  

> show #!2 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!2 models

> fitmap #27 inMap #2

Fit map fiber-6-fromtail-clean.mrc in map gp7.3-tail-flip.mrc using 181508
points  
correlation = 0.5555, correlation about mean = 0.127, overlap = 44.38  
steps = 88, shift = 3.96, angle = 4.47 degrees  
  
Position of fiber-6-fromtail-clean.mrc (#27) relative to gp7.3-tail-flip.mrc
(#2) coordinates:  
Matrix rotation and translation  
-0.99793475 0.06423576 0.00000611 406.07713296  
-0.06423576 -0.99793475 -0.00001921 433.05715478  
0.00000486 -0.00001956 1.00000000 -10.65337192  
Axis -0.00000274 0.00000970 -1.00000000  
Axis point 210.00020698 210.00061611 0.00000000  
Rotation angle (degrees) 176.31702631  
Shift along axis 10.65645962  
  

> hide #!58 models

> show #!58 models

> hide #!58 models

> show #!58 models

> fitmap #27 inMap #2

Fit map fiber-6-fromtail-clean.mrc in map gp7.3-tail-flip.mrc using 181508
points  
correlation = 0.9122, correlation about mean = 0.7185, overlap = 114.4  
steps = 64, shift = 1.64, angle = 1.65 degrees  
  
Position of fiber-6-fromtail-clean.mrc (#27) relative to gp7.3-tail-flip.mrc
(#2) coordinates:  
Matrix rotation and translation  
-0.99936871 0.03552717 0.00002105 412.40315554  
-0.03552717 -0.99936871 -0.00000689 427.32914327  
0.00002079 -0.00000763 1.00000000 -1.30268515  
Axis -0.00001045 0.00000363 -1.00000000  
Axis point 209.99823178 210.00053329 0.00000000  
Rotation angle (degrees) 177.96401461  
Shift along axis 1.29992552  
  

> surface dust #58 size 40

> hide #!2 models

> hide #!27 models

> show #!27 models

> hide #!27 models

> hide #!23 models

> show #!23 models

> hide #!23 models

> show #!23 models

> hide #!23 models

> hide #!26 models

> show #!26 models

> hide #!26 models

> show #!26 models

> show #!23 models

> hide #!23 models

> hide #!17 models

> show #!17 models

> hide #!17 models

> save session /data/disk3/modeling/Figure1-20191123.cxs

> show #!23 models

> hide #!23 models

> show #!23 models

> show #!17 models

> surface dust #58 size 10

> surface dust #58 size 50

> surface dust #58 size 60

> surface dust #58 size 80

> surface dust #58 size 70

> save image /data/disk3/Paper-use/1Figure1a.tif pixelSize 0.1 supersample 9
transparentBackground true

> show #!9 models

> lighting shadows true

> lighting flat

> lighting flat

> lighting flat

> surface dust #9 size 40

> view name Figure1a

> lighting flat

> save image /data/disk3/Paper-use/1Figure1a.tif pixelSize 0.1 supersample 9
transparentBackground true

Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 254, in execute  
cmd.run(cmd_text)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2641, in run  
result = ci.function(session, **kw_args)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/commands/save.py", line 61, in save  
fmt.export(session, filename, fmt.nicknames[0], **kw)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/io.py", line 213, in export  
result = self.export_func(session, path, **kw)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/image.py", line 150, in save_image  
transparent_background=transparent_background)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/view.py", line 410, in image  
if not fb.activate():  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 2073, in activate  
fbo = self.framebuffer_id  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 2069, in framebuffer_id  
self._fbo = fbo = self._create_framebuffer()  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 1905, in _create_framebuffer  
raise OpenGLError('Frame buffer invalid size %d, %d' % (w,h))  
chimerax.core.graphics.opengl.OpenGLError: Frame buffer invalid size 17741,
10951  
  
chimerax.core.graphics.opengl.OpenGLError: Frame buffer invalid size 17741,
10951  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 1905, in _create_framebuffer  
raise OpenGLError('Frame buffer invalid size %d, %d' % (w,h))  
  
See log for complete Python traceback.  
  

> save image /data/disk3/Paper-use/1Figure1a.tif pixelSize 0.1 supersample 9
transparentBackground true

Exception ignored in: <function Framebuffer.__del__ at 0x7ff6c826ca60>  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 1983, in __del__  
% self.name)  
chimerax.core.graphics.opengl.OpenGLError: OpenGL framebuffer "image capture"
was not deleted before core.graphics.Framebuffer destroyed  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 254, in execute  
cmd.run(cmd_text)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2641, in run  
result = ci.function(session, **kw_args)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/commands/save.py", line 61, in save  
fmt.export(session, filename, fmt.nicknames[0], **kw)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/io.py", line 213, in export  
result = self.export_func(session, path, **kw)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/image.py", line 150, in save_image  
transparent_background=transparent_background)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/view.py", line 410, in image  
if not fb.activate():  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 2073, in activate  
fbo = self.framebuffer_id  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 2069, in framebuffer_id  
self._fbo = fbo = self._create_framebuffer()  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 1905, in _create_framebuffer  
raise OpenGLError('Frame buffer invalid size %d, %d' % (w,h))  
chimerax.core.graphics.opengl.OpenGLError: Frame buffer invalid size 17741,
10951  
  
chimerax.core.graphics.opengl.OpenGLError: Frame buffer invalid size 17741,
10951  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 1905, in _create_framebuffer  
raise OpenGLError('Frame buffer invalid size %d, %d' % (w,h))  
  
See log for complete Python traceback.  
  

> save image /data/disk3/Paper-use/1Figure1b.tif pixelSize 0.1 supersample 9
transparentBackground true

Exception ignored in: <function Framebuffer.__del__ at 0x7ff6c826ca60>  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 1983, in __del__  
% self.name)  
chimerax.core.graphics.opengl.OpenGLError: OpenGL framebuffer "image capture"
was not deleted before core.graphics.Framebuffer destroyed  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 254, in execute  
cmd.run(cmd_text)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2641, in run  
result = ci.function(session, **kw_args)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/commands/save.py", line 61, in save  
fmt.export(session, filename, fmt.nicknames[0], **kw)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/io.py", line 213, in export  
result = self.export_func(session, path, **kw)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/image.py", line 150, in save_image  
transparent_background=transparent_background)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/view.py", line 410, in image  
if not fb.activate():  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 2073, in activate  
fbo = self.framebuffer_id  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 2069, in framebuffer_id  
self._fbo = fbo = self._create_framebuffer()  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 1905, in _create_framebuffer  
raise OpenGLError('Frame buffer invalid size %d, %d' % (w,h))  
chimerax.core.graphics.opengl.OpenGLError: Frame buffer invalid size 17741,
10951  
  
chimerax.core.graphics.opengl.OpenGLError: Frame buffer invalid size 17741,
10951  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 1905, in _create_framebuffer  
raise OpenGLError('Frame buffer invalid size %d, %d' % (w,h))  
  
See log for complete Python traceback.  
  

> save image /data/disk3/Paper-use/1Figure1b.tif pixelSize 0.1 supersample 9
transparentBackground true

Exception ignored in: <function Framebuffer.__del__ at 0x7ff6c826ca60>  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 1983, in __del__  
% self.name)  
chimerax.core.graphics.opengl.OpenGLError: OpenGL framebuffer "image capture"
was not deleted before core.graphics.Framebuffer destroyed  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 254, in execute  
cmd.run(cmd_text)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2641, in run  
result = ci.function(session, **kw_args)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/commands/save.py", line 61, in save  
fmt.export(session, filename, fmt.nicknames[0], **kw)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/io.py", line 213, in export  
result = self.export_func(session, path, **kw)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/image.py", line 150, in save_image  
transparent_background=transparent_background)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/view.py", line 410, in image  
if not fb.activate():  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 2073, in activate  
fbo = self.framebuffer_id  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 2069, in framebuffer_id  
self._fbo = fbo = self._create_framebuffer()  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 1905, in _create_framebuffer  
raise OpenGLError('Frame buffer invalid size %d, %d' % (w,h))  
chimerax.core.graphics.opengl.OpenGLError: Frame buffer invalid size 17629,
10881  
  
chimerax.core.graphics.opengl.OpenGLError: Frame buffer invalid size 17629,
10881  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 1905, in _create_framebuffer  
raise OpenGLError('Frame buffer invalid size %d, %d' % (w,h))  
  
See log for complete Python traceback.  
  

> save image /data/disk3/Paper-use/1Figure1b.tif pixelSize 0.1 supersample 9
transparentBackground true

Exception ignored in: <function Framebuffer.__del__ at 0x7ff6c826ca60>  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 1983, in __del__  
% self.name)  
chimerax.core.graphics.opengl.OpenGLError: OpenGL framebuffer "image capture"
was not deleted before core.graphics.Framebuffer destroyed  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 254, in execute  
cmd.run(cmd_text)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2641, in run  
result = ci.function(session, **kw_args)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/commands/save.py", line 61, in save  
fmt.export(session, filename, fmt.nicknames[0], **kw)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/io.py", line 213, in export  
result = self.export_func(session, path, **kw)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/image.py", line 150, in save_image  
transparent_background=transparent_background)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/view.py", line 410, in image  
if not fb.activate():  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 2073, in activate  
fbo = self.framebuffer_id  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 2069, in framebuffer_id  
self._fbo = fbo = self._create_framebuffer()  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 1905, in _create_framebuffer  
raise OpenGLError('Frame buffer invalid size %d, %d' % (w,h))  
chimerax.core.graphics.opengl.OpenGLError: Frame buffer invalid size 17629,
10881  
  
chimerax.core.graphics.opengl.OpenGLError: Frame buffer invalid size 17629,
10881  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 1905, in _create_framebuffer  
raise OpenGLError('Frame buffer invalid size %d, %d' % (w,h))  
  
See log for complete Python traceback.  
  

> lighting soft

> lighting simple

> lighting soft

> lighting full

> lighting shadows false

> lighting soft

> lighting soft

> save image /data/disk3/Paper-use/1Figure1a.tif pixelSize 0.1 supersample 9
transparentBackground true

Exception ignored in: <function Framebuffer.__del__ at 0x7ff6c826ca60>  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 1983, in __del__  
% self.name)  
chimerax.core.graphics.opengl.OpenGLError: OpenGL framebuffer "image capture"
was not deleted before core.graphics.Framebuffer destroyed  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 254, in execute  
cmd.run(cmd_text)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2641, in run  
result = ci.function(session, **kw_args)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/commands/save.py", line 61, in save  
fmt.export(session, filename, fmt.nicknames[0], **kw)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/io.py", line 213, in export  
result = self.export_func(session, path, **kw)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/image.py", line 150, in save_image  
transparent_background=transparent_background)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/view.py", line 410, in image  
if not fb.activate():  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 2073, in activate  
fbo = self.framebuffer_id  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 2069, in framebuffer_id  
self._fbo = fbo = self._create_framebuffer()  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 1905, in _create_framebuffer  
raise OpenGLError('Frame buffer invalid size %d, %d' % (w,h))  
chimerax.core.graphics.opengl.OpenGLError: Frame buffer invalid size 17741,
10951  
  
chimerax.core.graphics.opengl.OpenGLError: Frame buffer invalid size 17741,
10951  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/graphics/opengl.py", line 1905, in _create_framebuffer  
raise OpenGLError('Frame buffer invalid size %d, %d' % (w,h))  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 384.130
OpenGL renderer: Quadro K2200/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

[Eric Pettersen]

Duplicate of #2606