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Opened 6 years ago
Closed 6 years ago
#2612 closed defect (can't reproduce)
Side view: self.view.render is None
| Reported by: | Owned by: | greg | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | General Controls | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Linux-4.4.0-169-generic-x86_64-with-debian-stretch-sid ChimeraX Version: 0.91 (2019-06-29) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 0.91 (2019-06-29) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /data/disk3/modeling/gp10/Figure4-20191123.cxs opened ChimeraX session > hide #!14 models > show #!14 models > select #16 76410 atoms, 77460 bonds, 3 models selected > hide selAtoms surfaces > hide selAtoms > show selAtoms ribbons > hide #!16 models > show #!16 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!31 models > select clear > save session /data/disk3/modeling/gp10/Figure4-20191123.cxs > show #!11 models > select #11 2 models selected > ~select #11 Nothing selected > select #13 25470 atoms, 25820 bonds, 3 models selected > show selAtoms surfaces > hide selAtoms ribbons > hide #!10 models > show #!10 models > lighting soft > hide selAtoms surfaces > hide #!11 models > hide #!14.1 models > hide #!14 models > hide #!15.1 models > hide #!15 models > hide #!14.2 models > show #!30 models > select #30 12735 atoms, 12910 bonds, 1 model selected > select clear > save session /data/disk3/modeling/gp10/Figure4-20191123.cxs > hide #!30 models > show #!30 models > hide #!30 models > show #!30 models > hide #!30 models > show #!30 models > open /data/disk3/modeling/gp10/A.pdb A.pdb title: Capsid expansion mechanism of bacteriophage T7 revealed by multi-state atomic models derived from cryo-em reconstructions [more info...] Chain information for A.pdb #18 --- Chain | Description G | major capsid protein 10A > hide #!30 models > show #!30 models > matchmaker #18 to #30 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3j7w-C5-pentamer.pdb, chain A (#30) with A.pdb, chain G (#18), sequence alignment score = 1700 RMSD between 343 pruned atom pairs is 0.001 angstroms; (across all 343 pairs: 0.001) > hide #!30 models > hide #!16 models > select #13 25470 atoms, 25820 bonds, 3 models selected > hide selAtoms surfaces > show selAtoms ribbons > select clear > hide #!18 models > save session /data/disk3/modeling/gp10/Figure4-20191123.cxs > show #!18 models > hide #!18 models > show #!29 models > hide #!29 models > show #!29 models > show #!30 models > hide #!29 models > show #!10.2 models > hide #!16.1 models > hide #!16.2 models > show #!16.2 models > show #!16.1 models > transparency #10.2 50 > transparency #10.2 70 > transparency #10.2 90 > transparency #10.2 70 > lighting soft > hide #!16 models > hide #!13 models > show #!16 models > hide #!10 models > show #!10 models > transparency #10.2 30 > lighting simple > lighting soft > lighting flat > lighting soft > lighting shadows true intensity 0.5 > lighting flat > lighting full > lighting soft > lighting simple > lighting soft Expected a keyword > surface dust #10.2 size 30 > surface dust #10.2 size 80 > transparency #10.2 80 > lighting soft > transparency #10.2 100 > hide #!16 models > show #!16 models > hide #!10 models > show #!10 models > hide #!10 models > lighting simple > lighting full > lighting flat > lighting soft > lighting soft > lighting flat > show #!10 models > lighting soft > show #!17 models > hide #!17 models > hide #!16 models > show #!16 models > view name test > view Figure2a Expected an objects specifier or a view name or a keyword > view Figure2b > view Figure2c > select #10 4 models selected > ~select #10 Nothing selected > hide #!10 models > show #!10 models > transparency #10.2 0 > hide #!16 models > hide #!30 models > show #!30 models > select #30 12735 atoms, 12910 bonds, 1 model selected > show selAtoms surfaces > hide selAtoms > show selAtoms surfaces > hide selAtoms ribbons > select clear > hide #!13.1 models > hide #!13.2 models > hide #!10 models > show #!16 models > select #16 76410 atoms, 77460 bonds, 3 models selected > show selAtoms surfaces > select clear > toolshed show "Side View" > hide #!15.2 models > hide #!16 models > show #!16 models > view cofr false > show #!10 models > hide #!16.2 models > show #!16.2 models > transparency #10.2 30 > transparency #10.2 20 > transparency #10.2 60 > transparency #10.2 50 > view name Figure2a > save image /data/disk3/Paper-use/n1Figure2a.tif pixelSize 1 supersample 9 transparentBackground true > save image /data/disk3/Paper-use/n1Figure2a.tif pixelSize 1 supersample 9 transparentBackground true > save image /data/disk3/Paper-use/n1Figure4a.tif pixelSize 1 supersample 9 transparentBackground true Traceback (most recent call last): File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/sideview/tool.py", line 116, in exposeEvent self.render() File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/sideview/tool.py", line 139, in render mvwin = self.view.render.use_shared_context(self, width, height) AttributeError: 'NoneType' object has no attribute 'use_shared_context' AttributeError: 'NoneType' object has no attribute 'use_shared_context' File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/sideview/tool.py", line 139, in render mvwin = self.view.render.use_shared_context(self, width, height) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/sideview/tool.py", line 116, in exposeEvent self.render() File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/sideview/tool.py", line 139, in render mvwin = self.view.render.use_shared_context(self, width, height) AttributeError: 'NoneType' object has no attribute 'use_shared_context' AttributeError: 'NoneType' object has no attribute 'use_shared_context' File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/sideview/tool.py", line 139, in render mvwin = self.view.render.use_shared_context(self, width, height) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 384.130 OpenGL renderer: Quadro K2200/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation
Change History (2)
comment:1 by , 6 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → General Controls |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Side view: self.view.render is None |
comment:2 by , 6 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
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Unable to reproduce with current code. OpenGL context management has changed since then, so maybe it was fixed.