Opened 6 years ago
Closed 6 years ago
#2682 closed defect (fixed)
Tape measure mouse mode error on map orthoplanes
Reported by: | Owned by: | Tom Goddard | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Volume Data | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.17763 ChimeraX Version: 0.91 (2019-12-12) Description Tape measure in orthoplanes mode gives this error. Log: UCSF ChimeraX version: 0.91 (2019-12-12) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open C:\Users\goddard\Desktop\vrdemos\opioids-vr-2018\ligands\beta- > endorphin.pdb Chain information for beta-endorphin.pdb #1 --- Chain | Description A | No description available > show atoms > hide cartoons > set bgColor white > lighting soft > style sphere Changed 498 atom styles > rainbow > show surfaces > hide surfaces > view orient > graphics silhouettes true > graphics silhouettes false > open 20205 fromDatabase emdb Opened emd_20205.map, grid size 98,112,104, pixel 1.07,1.07,1.07, shown at level 0.287, step 1, values float32 > volume step 2 > volume planes z orthoplanes off style solid > ui mousemode rightMode "mark plane" > marker #3 30.55,86.85,54.57 color yellow radius 1.07 > marker #3 68.65,72.88,54.57 color yellow radius 1.07 > ui mousemode rightMode "delete markers" > marker delete #3:2 > volume style surface > volume showOutlineBox true > set bgColor black > volume region all orthoplanes off > volume #2 change image level -0.03835,0 level 0.3237,0.8 level 0.5169,1 > volume #2 level 0.2402 > ui mousemode rightMode "contour level" > volume #2 level 0.1189 > volume #2 level 0.03763 > volume step 1 > style stick Changed 499 atom styles > view > view > close #3 > view > color byhetero > lighting simple > ui mousemode rightMode "bond rotation" > torsion /A:31@HB2,CB,CA,N 112.59 > close > open C:\Users\goddard\Desktop\vrdemos\dicom\Belarus_TB\20060710 format dicom Opened CT 2, grid size 512,512,124, pixel 0.59,0.59,2.5, shown at step 1, values int16 > volume region all orthoplanes off > volume appearance chest > volume planes z orthoplanes off style solid > mousemode right "move planes" > volume #1.1.1.1 region 0,0,74,511,511,74 > mousemode right "crop volume" > volume #1.1.1.1 region 0,0,74,511,511,91 > mousemode right "tape measure" > marker segment #2 -112.6,76.37,-55.5 toPosition 90.91,73.65,-55.5 color > yellow radius 0.1475 label 203.6 labelHeight 20.36 labelColor yellow > mousemode right windowing > volume #1.1.1.1 level -684.7,0 level -635.6,0.985 level -427.2,0 level > 85.86,0.985 level 33.76,0 level 96.88,0.015 level -480.3,1 level 37.77,1 > level 321.3,0 level 343.4,1 level 3018,1 > volume #1.1.1.1 level -733.2,0 level -681.7,0.985 level -463.2,0 level > 74.86,0.985 level 20.22,0 level 86.42,0.015 level -518.9,1 level 24.42,1 > level 321.8,0 level 344.9,1 level 3150,1 > view orient > volume #1.1.1.1 level -733.2,0 level -681.7,0.985 level -463.2,0 level > 74.86,0.985 level 20.22,0 level 86.42,0.015 level -518.9,1 level 24.42,1 > level 321.8,0 level 344.9,1 level 3150,1 > mousemode right "tape measure" > marker delete #2 > volume appearance "Airways II" > volume #1.1.1.1 orthoplanes xyz positionPlanes 256,256,62 style solid region > all Traceback (most recent call last): File "C:\Program Files\ChimeraX-Dec-12-2019\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py", line 469, in <lambda> gw.mousePressEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_down") File "C:\Program Files\ChimeraX-Dec-12-2019\bin\lib\site- packages\chimerax\mouse_modes\mousemodes.py", line 398, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File "C:\Program Files\ChimeraX-Dec-12-2019\bin\lib\site- packages\chimerax\atomic\tape_measure\tape.py", line 33, in mouse_down p, v = self._picked_point(event) File "C:\Program Files\ChimeraX-Dec-12-2019\bin\lib\site- packages\chimerax\atomic\tape_measure\tape.py", line 140, in _picked_point pm, vm = method(xyz1, xyz2) File "C:\Program Files\ChimeraX-Dec-12-2019\bin\lib\site- packages\chimerax\atomic\tape_measure\tape.py", line 178, in _volume_maximum_point sxyz, v = first_volume_maxima(xyz1, xyz2, vlist) File "C:\Program Files\ChimeraX-Dec-12-2019\bin\lib\site- packages\chimerax\markers\mouse.py", line 360, in first_volume_maxima v_xyz_in, v_xyz_out = data_slice(v, line) File "C:\Program Files\ChimeraX-Dec-12-2019\bin\lib\site- packages\chimerax\markers\mouse.py", line 420, in data_slice xyz_in = xyz_out = slice.face_intercept_point(v, line) AttributeError: module 'chimerax.map.slice' has no attribute 'face_intercept_point' AttributeError: module 'chimerax.map.slice' has no attribute 'face_intercept_point' File "C:\Program Files\ChimeraX-Dec-12-2019\bin\lib\site- packages\chimerax\markers\mouse.py", line 420, in data_slice xyz_in = xyz_out = slice.face_intercept_point(v, line) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 430.39 OpenGL renderer: Quadro P6000/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation
Change History (2)
comment:1 by , 6 years ago
Component: | Unassigned → Volume Data |
---|---|
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → Tape measure mouse mode error on map orthoplanes |
comment:2 by , 6 years ago
Resolution: | → fixed |
---|---|
Status: | assigned → closed |
Note:
See TracTickets
for help on using tickets.
Fixed
Tape measure did not consider orthoplanes (or boxfaces) as placing marker on a plane.