Ticket #2585: make_atomic.txt

File make_atomic.txt, 263.7 KB (added by goddard@…, 6 years ago)

Added by email2trac

Line 
1$ make install
2make -C atomic_cpp
3make[1]: Entering directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp'
4mkdir lib
5mkdir include
6mkdir include/atomic
7cp ctypes_pyinst.h include/atomic
8mkdir data
9make install
10make[2]: Entering directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp'
11make -C pyinstance_cpp install
12make[3]: Entering directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/pyinstance_cpp'
13sed -e 's/LIBNAME/PYINSTANCE/' < /home/goddard/chimerax/build/include/imex.i > imex.h
14sed -e 's/PYINSTANCE/PYINSTANCE_MAP/' < imex.h > imex.map.h
15cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' /c PythonInstance.cpp
16PythonInstance.cpp
17cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 /LD /Felibpyinstance.dll PythonInstance.obj /link /LIBPATH:'C:/cygwin64/home/goddard/chimerax/build/lib' python37.lib; if [ -e libpyinstance.dll.manifest ]; then mt -nologo -manifest libpyinstance.dll.manifest -outputresource:libpyinstance.dll\;2 ; fi
18 Creating library libpyinstance.lib and object libpyinstance.exp
19/home/goddard/chimerax/build/bin/rsync.convert -rlptWv libpyinstance.dll ../lib
20sending incremental file list
21libpyinstance.dll
22
23sent 15,460 bytes received 35 bytes 30,990.00 bytes/sec
24total size is 15,360 speedup is 0.99
25/home/goddard/chimerax/build/bin/rsync.convert -rlptWv libpyinstance.lib ../lib
26sending incremental file list
27libpyinstance.lib
28
29sent 3,256 bytes received 35 bytes 6,582.00 bytes/sec
30total size is 3,156 speedup is 0.96
31/home/goddard/chimerax/build/bin/rsync.convert -rlptWv imex.h imex.map.h PythonInstance.instantiate.h PythonInstance.declare.h ../include/pyinstance/
32sending incremental file list
33created directory ../include/pyinstance
34PythonInstance.declare.h
35PythonInstance.instantiate.h
36imex.h
37imex.map.h
38
39sent 12,079 bytes received 136 bytes 24,430.00 bytes/sec
40total size is 11,772 speedup is 0.96
41make[3]: Leaving directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/pyinstance_cpp'
42make -C element_cpp install
43make[3]: Entering directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/element_cpp'
44sed -e 's/LIBNAME/ELEMENT/' < /home/goddard/chimerax/build/include/imex.i > imex.h
45cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' /c Element.cpp
46Element.cpp
47cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 /LD /Felibelement.dll Element.obj /link /LIBPATH:'C:/cygwin64/home/goddard/chimerax/build/lib' python37.lib /LIBPATH:../lib libpyinstance.lib python37.lib; if [ -e libelement.dll.manifest ]; then mt -nologo -manifest libelement.dll.manifest -outputresource:libelement.dll\;2 ; fi
48 Creating library libelement.lib and object libelement.exp
49/home/goddard/chimerax/build/bin/rsync.convert -rlptWv libelement.dll ../lib
50sending incremental file list
51libelement.dll
52
53sent 73,326 bytes received 35 bytes 146,722.00 bytes/sec
54total size is 73,216 speedup is 1.00
55/home/goddard/chimerax/build/bin/rsync.convert -rlptWv libelement.lib ../lib
56sending incremental file list
57libelement.lib
58
59sent 28,680 bytes received 35 bytes 57,430.00 bytes/sec
60total size is 28,582 speedup is 1.00
61/home/goddard/chimerax/build/bin/rsync.convert -rlptWv imex.h Element.h ../include/element/
62sending incremental file list
63created directory ../include/element
64Element.h
65imex.h
66
67sent 4,653 bytes received 95 bytes 9,496.00 bytes/sec
68total size is 4,492 speedup is 0.95
69make[3]: Leaving directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/element_cpp'
70make -C atomstruct_cpp install
71make[3]: Entering directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/atomstruct_cpp'
72sed -e 's/LIBNAME/ATOMSTRUCT/' < /home/goddard/chimerax/build/include/imex.i > imex.h
73cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c Chain.cpp
74Chain.cpp
75cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c CompSS.cpp
76CompSS.cpp
77c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float'
78cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c Bond.cpp
79Bond.cpp
80c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float'
81c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\PBGroup.h(66): warning C4305: 'initializing': truncation from 'double' to 'float'
82cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c Structure.cpp
83Structure.cpp
84C:/cygwin64/home/goddard/chimerax/build/include\pysupport/convert.h(252): warning C4244: 'return': conversion from 'double' to 'long', possible loss of data
85c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float'
86c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\PBGroup.h(66): warning C4305: 'initializing': truncation from 'double' to 'float'
87cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c seq_assoc.cpp
88seq_assoc.cpp
89c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float'
90c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\seq_assoc.h(74): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'atomstruct::SA_AssocFailure'
91c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error'
92c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\seq_assoc.h(74): note: see declaration of 'atomstruct::SA_AssocFailure'
93cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c StructureSeq.cpp
94StructureSeq.cpp
95c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float'
96cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c Ring.cpp
97Ring.cpp
98c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float'
99Ring.cpp(220): warning C4311: 'reinterpret_cast': pointer truncation from 'atomstruct::Bond *' to 'long'
100Ring.cpp(220): warning C4302: 'reinterpret_cast': truncation from 'atomstruct::Bond *' to 'long'
101cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c AtomTypes.cpp
102AtomTypes.cpp
103c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float'
104c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\PBGroup.h(66): warning C4305: 'initializing': truncation from 'double' to 'float'
105c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl/TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
106c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error'
107c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl/TAexcept.h(25): note: see declaration of 'tmpl::TA_exception'
108cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c PBManager.cpp
109PBManager.cpp
110c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\PBGroup.h(66): warning C4305: 'initializing': truncation from 'double' to 'float'
111c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float'
112C:/cygwin64/home/goddard/chimerax/build/include\pysupport/convert.h(252): warning C4244: 'return': conversion from 'double' to 'long', possible loss of data
113cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c Atom.cpp
114Atom.cpp
115c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float'
116c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\PBGroup.h(66): warning C4305: 'initializing': truncation from 'double' to 'float'
117c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
118c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error'
119c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception'
120C:/cygwin64/home/goddard/chimerax/build/include\pysupport/convert.h(252): warning C4244: 'return': conversion from 'double' to 'long', possible loss of data
121Atom.cpp(262): warning C4305: 'return': truncation from 'double' to 'float'
122Atom.cpp(269): warning C4305: 'return': truncation from 'double' to 'float'
123Atom.cpp(273): warning C4305: 'return': truncation from 'double' to 'float'
124Atom.cpp(276): warning C4305: 'return': truncation from 'double' to 'float'
125Atom.cpp(279): warning C4305: 'return': truncation from 'double' to 'float'
126Atom.cpp(282): warning C4305: 'return': truncation from 'double' to 'float'
127Atom.cpp(285): warning C4305: 'return': truncation from 'double' to 'float'
128Atom.cpp(288): warning C4305: 'return': truncation from 'double' to 'float'
129Atom.cpp(302): warning C4305: 'return': truncation from 'double' to 'float'
130Atom.cpp(304): warning C4305: 'return': truncation from 'double' to 'float'
131Atom.cpp(305): warning C4305: 'return': truncation from 'double' to 'float'
132Atom.cpp(310): warning C4305: 'return': truncation from 'double' to 'float'
133Atom.cpp(311): warning C4305: 'return': truncation from 'double' to 'float'
134Atom.cpp(315): warning C4305: 'return': truncation from 'double' to 'float'
135Atom.cpp(317): warning C4305: 'return': truncation from 'double' to 'float'
136Atom.cpp(320): warning C4305: 'return': truncation from 'double' to 'float'
137Atom.cpp(322): warning C4305: 'return': truncation from 'double' to 'float'
138Atom.cpp(325): warning C4305: 'return': truncation from 'double' to 'float'
139Atom.cpp(329): warning C4305: 'return': truncation from 'double' to 'float'
140Atom.cpp(330): warning C4305: 'return': truncation from 'double' to 'float'
141Atom.cpp(335): warning C4305: 'return': truncation from 'double' to 'float'
142Atom.cpp(341): warning C4305: 'return': truncation from 'double' to 'float'
143Atom.cpp(343): warning C4305: 'return': truncation from 'double' to 'float'
144Atom.cpp(345): warning C4305: 'return': truncation from 'double' to 'float'
145Atom.cpp(347): warning C4305: 'return': truncation from 'double' to 'float'
146Atom.cpp(348): warning C4305: 'return': truncation from 'double' to 'float'
147Atom.cpp(353): warning C4305: 'return': truncation from 'double' to 'float'
148Atom.cpp(355): warning C4305: 'return': truncation from 'double' to 'float'
149Atom.cpp(356): warning C4305: 'return': truncation from 'double' to 'float'
150Atom.cpp(361): warning C4305: 'return': truncation from 'double' to 'float'
151Atom.cpp(363): warning C4305: 'return': truncation from 'double' to 'float'
152Atom.cpp(364): warning C4305: 'return': truncation from 'double' to 'float'
153Atom.cpp(368): warning C4305: 'return': truncation from 'double' to 'float'
154Atom.cpp(371): warning C4305: 'return': truncation from 'double' to 'float'
155Atom.cpp(375): warning C4305: 'return': truncation from 'double' to 'float'
156Atom.cpp(381): warning C4305: 'return': truncation from 'double' to 'float'
157Atom.cpp(383): warning C4305: 'return': truncation from 'double' to 'float'
158Atom.cpp(385): warning C4305: 'return': truncation from 'double' to 'float'
159Atom.cpp(386): warning C4305: 'return': truncation from 'double' to 'float'
160Atom.cpp(391): warning C4305: 'return': truncation from 'double' to 'float'
161Atom.cpp(393): warning C4305: 'return': truncation from 'double' to 'float'
162Atom.cpp(395): warning C4305: 'return': truncation from 'double' to 'float'
163Atom.cpp(401): warning C4305: 'return': truncation from 'double' to 'float'
164Atom.cpp(405): warning C4305: 'return': truncation from 'double' to 'float'
165Atom.cpp(408): warning C4305: 'return': truncation from 'double' to 'float'
166Atom.cpp(411): warning C4305: 'return': truncation from 'double' to 'float'
167Atom.cpp(416): warning C4305: 'return': truncation from 'double' to 'float'
168Atom.cpp(418): warning C4305: 'return': truncation from 'double' to 'float'
169Atom.cpp(419): warning C4305: 'return': truncation from 'double' to 'float'
170Atom.cpp(424): warning C4305: 'return': truncation from 'double' to 'float'
171Atom.cpp(426): warning C4305: 'return': truncation from 'double' to 'float'
172Atom.cpp(427): warning C4305: 'return': truncation from 'double' to 'float'
173Atom.cpp(432): warning C4305: 'return': truncation from 'double' to 'float'
174Atom.cpp(434): warning C4305: 'return': truncation from 'double' to 'float'
175Atom.cpp(435): warning C4305: 'return': truncation from 'double' to 'float'
176Atom.cpp(440): warning C4305: 'return': truncation from 'double' to 'float'
177Atom.cpp(441): warning C4305: 'return': truncation from 'double' to 'float'
178Atom.cpp(446): warning C4305: 'return': truncation from 'double' to 'float'
179Atom.cpp(447): warning C4305: 'return': truncation from 'double' to 'float'
180Atom.cpp(452): warning C4305: 'return': truncation from 'double' to 'float'
181Atom.cpp(454): warning C4305: 'return': truncation from 'double' to 'float'
182Atom.cpp(455): warning C4305: 'return': truncation from 'double' to 'float'
183Atom.cpp(460): warning C4305: 'return': truncation from 'double' to 'float'
184Atom.cpp(461): warning C4305: 'return': truncation from 'double' to 'float'
185Atom.cpp(464): warning C4305: 'return': truncation from 'double' to 'float'
186Atom.cpp(467): warning C4305: 'return': truncation from 'double' to 'float'
187Atom.cpp(474): warning C4305: 'return': truncation from 'double' to 'float'
188Atom.cpp(480): warning C4305: 'return': truncation from 'double' to 'float'
189Atom.cpp(482): warning C4305: 'return': truncation from 'double' to 'float'
190Atom.cpp(484): warning C4305: 'return': truncation from 'double' to 'float'
191Atom.cpp(485): warning C4305: 'return': truncation from 'double' to 'float'
192Atom.cpp(490): warning C4305: 'return': truncation from 'double' to 'float'
193Atom.cpp(492): warning C4305: 'return': truncation from 'double' to 'float'
194Atom.cpp(494): warning C4305: 'return': truncation from 'double' to 'float'
195Atom.cpp(495): warning C4305: 'return': truncation from 'double' to 'float'
196Atom.cpp(500): warning C4305: 'return': truncation from 'double' to 'float'
197Atom.cpp(502): warning C4305: 'return': truncation from 'double' to 'float'
198Atom.cpp(503): warning C4305: 'return': truncation from 'double' to 'float'
199Atom.cpp(508): warning C4305: 'return': truncation from 'double' to 'float'
200Atom.cpp(510): warning C4305: 'return': truncation from 'double' to 'float'
201Atom.cpp(512): warning C4305: 'return': truncation from 'double' to 'float'
202Atom.cpp(513): warning C4305: 'return': truncation from 'double' to 'float'
203Atom.cpp(518): warning C4305: 'return': truncation from 'double' to 'float'
204Atom.cpp(519): warning C4305: 'return': truncation from 'double' to 'float'
205Atom.cpp(522): warning C4305: 'return': truncation from 'double' to 'float'
206Atom.cpp(525): warning C4305: 'return': truncation from 'double' to 'float'
207Atom.cpp(528): warning C4305: 'return': truncation from 'double' to 'float'
208Atom.cpp(531): warning C4305: 'return': truncation from 'double' to 'float'
209Atom.cpp(536): warning C4305: 'return': truncation from 'double' to 'float'
210Atom.cpp(537): warning C4305: 'return': truncation from 'double' to 'float'
211Atom.cpp(542): warning C4305: 'return': truncation from 'double' to 'float'
212Atom.cpp(543): warning C4305: 'return': truncation from 'double' to 'float'
213Atom.cpp(548): warning C4305: 'return': truncation from 'double' to 'float'
214Atom.cpp(550): warning C4305: 'return': truncation from 'double' to 'float'
215Atom.cpp(552): warning C4305: 'return': truncation from 'double' to 'float'
216Atom.cpp(553): warning C4305: 'return': truncation from 'double' to 'float'
217Atom.cpp(558): warning C4305: 'return': truncation from 'double' to 'float'
218Atom.cpp(559): warning C4305: 'return': truncation from 'double' to 'float'
219Atom.cpp(564): warning C4305: 'return': truncation from 'double' to 'float'
220Atom.cpp(566): warning C4305: 'return': truncation from 'double' to 'float'
221Atom.cpp(567): warning C4305: 'return': truncation from 'double' to 'float'
222Atom.cpp(570): warning C4305: 'return': truncation from 'double' to 'float'
223Atom.cpp(575): warning C4305: 'return': truncation from 'double' to 'float'
224Atom.cpp(576): warning C4305: 'return': truncation from 'double' to 'float'
225Atom.cpp(580): warning C4305: 'return': truncation from 'double' to 'float'
226Atom.cpp(586): warning C4305: 'return': truncation from 'double' to 'float'
227Atom.cpp(588): warning C4305: 'return': truncation from 'double' to 'float'
228Atom.cpp(590): warning C4305: 'return': truncation from 'double' to 'float'
229Atom.cpp(591): warning C4305: 'return': truncation from 'double' to 'float'
230Atom.cpp(596): warning C4305: 'return': truncation from 'double' to 'float'
231Atom.cpp(598): warning C4305: 'return': truncation from 'double' to 'float'
232Atom.cpp(599): warning C4305: 'return': truncation from 'double' to 'float'
233Atom.cpp(604): warning C4305: 'return': truncation from 'double' to 'float'
234Atom.cpp(606): warning C4305: 'return': truncation from 'double' to 'float'
235Atom.cpp(608): warning C4305: 'return': truncation from 'double' to 'float'
236Atom.cpp(609): warning C4305: 'return': truncation from 'double' to 'float'
237Atom.cpp(614): warning C4305: 'return': truncation from 'double' to 'float'
238Atom.cpp(618): warning C4305: 'return': truncation from 'double' to 'float'
239Atom.cpp(619): warning C4305: 'return': truncation from 'double' to 'float'
240Atom.cpp(624): warning C4305: 'return': truncation from 'double' to 'float'
241Atom.cpp(625): warning C4305: 'return': truncation from 'double' to 'float'
242Atom.cpp(630): warning C4305: 'return': truncation from 'double' to 'float'
243Atom.cpp(632): warning C4305: 'return': truncation from 'double' to 'float'
244Atom.cpp(634): warning C4305: 'return': truncation from 'double' to 'float'
245Atom.cpp(635): warning C4305: 'return': truncation from 'double' to 'float'
246Atom.cpp(640): warning C4305: 'return': truncation from 'double' to 'float'
247Atom.cpp(641): warning C4305: 'return': truncation from 'double' to 'float'
248Atom.cpp(646): warning C4305: 'return': truncation from 'double' to 'float'
249Atom.cpp(647): warning C4305: 'return': truncation from 'double' to 'float'
250Atom.cpp(652): warning C4305: 'return': truncation from 'double' to 'float'
251Atom.cpp(655): warning C4305: 'return': truncation from 'double' to 'float'
252Atom.cpp(660): warning C4305: 'return': truncation from 'double' to 'float'
253Atom.cpp(661): warning C4305: 'return': truncation from 'double' to 'float'
254Atom.cpp(666): warning C4305: 'return': truncation from 'double' to 'float'
255Atom.cpp(667): warning C4305: 'return': truncation from 'double' to 'float'
256Atom.cpp(672): warning C4305: 'return': truncation from 'double' to 'float'
257Atom.cpp(673): warning C4305: 'return': truncation from 'double' to 'float'
258Atom.cpp(676): warning C4305: 'return': truncation from 'double' to 'float'
259Atom.cpp(682): warning C4305: 'return': truncation from 'double' to 'float'
260Atom.cpp(687): warning C4305: 'return': truncation from 'double' to 'float'
261Atom.cpp(688): warning C4305: 'return': truncation from 'double' to 'float'
262Atom.cpp(693): warning C4305: 'return': truncation from 'double' to 'float'
263Atom.cpp(694): warning C4305: 'return': truncation from 'double' to 'float'
264Atom.cpp(699): warning C4305: 'return': truncation from 'double' to 'float'
265Atom.cpp(700): warning C4305: 'return': truncation from 'double' to 'float'
266Atom.cpp(705): warning C4305: 'return': truncation from 'double' to 'float'
267Atom.cpp(707): warning C4305: 'return': truncation from 'double' to 'float'
268Atom.cpp(708): warning C4305: 'return': truncation from 'double' to 'float'
269Atom.cpp(711): warning C4305: 'return': truncation from 'double' to 'float'
270Atom.cpp(714): warning C4305: 'return': truncation from 'double' to 'float'
271Atom.cpp(717): warning C4305: 'return': truncation from 'double' to 'float'
272Atom.cpp(720): warning C4305: 'return': truncation from 'double' to 'float'
273Atom.cpp(723): warning C4305: 'return': truncation from 'double' to 'float'
274Atom.cpp(728): warning C4305: 'return': truncation from 'double' to 'float'
275Atom.cpp(729): warning C4305: 'return': truncation from 'double' to 'float'
276Atom.cpp(732): warning C4305: 'return': truncation from 'double' to 'float'
277Atom.cpp(737): warning C4305: 'return': truncation from 'double' to 'float'
278Atom.cpp(739): warning C4305: 'return': truncation from 'double' to 'float'
279Atom.cpp(741): warning C4305: 'return': truncation from 'double' to 'float'
280Atom.cpp(742): warning C4305: 'return': truncation from 'double' to 'float'
281Atom.cpp(747): warning C4305: 'return': truncation from 'double' to 'float'
282Atom.cpp(749): warning C4305: 'return': truncation from 'double' to 'float'
283Atom.cpp(755): warning C4305: 'return': truncation from 'double' to 'float'
284Atom.cpp(757): warning C4305: 'return': truncation from 'double' to 'float'
285Atom.cpp(759): warning C4305: 'return': truncation from 'double' to 'float'
286Atom.cpp(760): warning C4305: 'return': truncation from 'double' to 'float'
287Atom.cpp(765): warning C4305: 'return': truncation from 'double' to 'float'
288Atom.cpp(767): warning C4305: 'return': truncation from 'double' to 'float'
289Atom.cpp(768): warning C4305: 'return': truncation from 'double' to 'float'
290Atom.cpp(771): warning C4305: 'return': truncation from 'double' to 'float'
291Atom.cpp(774): warning C4305: 'return': truncation from 'double' to 'float'
292Atom.cpp(779): warning C4305: 'return': truncation from 'double' to 'float'
293Atom.cpp(780): warning C4305: 'return': truncation from 'double' to 'float'
294Atom.cpp(783): warning C4305: 'return': truncation from 'double' to 'float'
295Atom.cpp(788): warning C4305: 'return': truncation from 'double' to 'float'
296Atom.cpp(790): warning C4305: 'return': truncation from 'double' to 'float'
297Atom.cpp(792): warning C4305: 'return': truncation from 'double' to 'float'
298Atom.cpp(793): warning C4305: 'return': truncation from 'double' to 'float'
299Atom.cpp(796): warning C4305: 'return': truncation from 'double' to 'float'
300Atom.cpp(799): warning C4305: 'return': truncation from 'double' to 'float'
301Atom.cpp(802): warning C4305: 'return': truncation from 'double' to 'float'
302Atom.cpp(810): warning C4305: 'return': truncation from 'double' to 'float'
303Atom.cpp(811): warning C4305: 'return': truncation from 'double' to 'float'
304Atom.cpp(814): warning C4305: 'return': truncation from 'double' to 'float'
305Atom.cpp(817): warning C4305: 'return': truncation from 'double' to 'float'
306Atom.cpp(820): warning C4305: 'return': truncation from 'double' to 'float'
307Atom.cpp(823): warning C4305: 'return': truncation from 'double' to 'float'
308Atom.cpp(829): warning C4305: 'return': truncation from 'double' to 'float'
309cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c Residue.cpp
310Residue.cpp
311c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float'
312Residue.cpp(416): warning C4503: 'std::_Compressed_pair<std::less<_Kty>,std::_Compressed_pair<std::_Wrap_alloc<std::allocator<_Other>>,std::_Tree_val<std::_Tree_simple_types<std::pair<const _Kty,_Ty>>>,true>,true>::_Get_second': decorated name length exceeded, name was truncated
313 with
314 [
315 _Kty=std::string,
316 _Other=std::_Tree_node<std::pair<const std::string,tmpl::TemplateCache::ResMap>,void *>,
317 _Ty=tmpl::TemplateCache::ResMap
318 ]
319Residue.cpp(416): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::erase': decorated name length exceeded, name was truncated
320 with
321 [
322 _Kty=std::string,
323 _Ty=tmpl::TemplateCache::ResMap,
324 _Pr=std::less<std::string>,
325 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
326 ]
327Residue.cpp(416): warning C4503: 'std::_Tree_comp_alloc<_Traits>::_Myval': decorated name length exceeded, name was truncated
328 with
329 [
330 _Traits=std::_Tmap_traits<std::string,tmpl::TemplateCache::ResMap,std::less<std::string>,std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>,false>
331 ]
332Residue.cpp(416): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Tree': decorated name length exceeded, name was truncated
333 with
334 [
335 _Kty=std::string,
336 _Ty=tmpl::TemplateCache::ResMap,
337 _Pr=std::less<std::string>,
338 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
339 ]
340Residue.cpp(416): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Copy': decorated name length exceeded, name was truncated
341 with
342 [
343 _Kty=std::string,
344 _Ty=tmpl::TemplateCache::ResMap,
345 _Pr=std::less<std::string>,
346 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
347 ]
348Residue.cpp(416): warning C4503: 'std::_Tree_comp_alloc<_Traits>::_Tree_comp_alloc': decorated name length exceeded, name was truncated
349 with
350 [
351 _Traits=std::_Tmap_traits<std::string,tmpl::TemplateCache::ResMap,std::less<std::string>,std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>,false>
352 ]
353Residue.cpp(416): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Copy_nodes': decorated name length exceeded, name was truncated
354 with
355 [
356 _Kty=std::string,
357 _Ty=tmpl::TemplateCache::ResMap,
358 _Pr=std::less<std::string>,
359 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
360 ]
361Residue.cpp(416): warning C4503: 'std::allocator_traits<_Alloc>::destroy': decorated name length exceeded, name was truncated
362 with
363 [
364 _Alloc=std::allocator<std::_Tree_node<std::pair<const std::string,tmpl::TemplateCache::ResMap>,void *>>
365 ]
366Residue.cpp(416): warning C4503: 'std::allocator_traits<_Alloc>::construct': decorated name length exceeded, name was truncated
367 with
368 [
369 _Alloc=std::allocator<std::_Tree_node<std::pair<const std::string,tmpl::TemplateCache::ResMap>,void *>>
370 ]
371Residue.cpp(416): warning C4503: 'std::_Compressed_pair<std::less<_Kty>,std::_Compressed_pair<std::_Wrap_alloc<std::allocator<_Other>>,std::_Tree_val<std::_Tree_simple_types<std::pair<const _Kty,_Ty>>>,true>,true>::_Compressed_pair': decorated name length exceeded, name was truncated
372 with
373 [
374 _Kty=std::string,
375 _Other=std::_Tree_node<std::pair<const std::string,tmpl::TemplateCache::ResMap>,void *>,
376 _Ty=tmpl::TemplateCache::ResMap
377 ]
378Residue.cpp(416): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Copy_or_move': decorated name length exceeded, name was truncated
379 with
380 [
381 _Kty=std::string,
382 _Ty=tmpl::TemplateCache::ResMap,
383 _Pr=std::less<std::string>,
384 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
385 ]
386Residue.cpp(416): warning C4503: 'std::_Compressed_pair<std::_Wrap_alloc<std::allocator<_Other>>,std::_Tree_val<std::_Tree_simple_types<std::pair<const _Kty,_Ty>>>,true>::_Compressed_pair': decorated name length exceeded, name was truncated
387 with
388 [
389 _Other=std::_Tree_node<std::pair<const std::string,tmpl::TemplateCache::ResMap>,void *>,
390 _Kty=std::string,
391 _Ty=tmpl::TemplateCache::ResMap
392 ]
393Residue.cpp(416): warning C4503: 'std::_Tree_comp_alloc<_Traits>::_Buynode': decorated name length exceeded, name was truncated
394 with
395 [
396 _Traits=std::_Tmap_traits<std::string,tmpl::TemplateCache::ResMap,std::less<std::string>,std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>,false>
397 ]
398cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c AtomicStructure.cpp
399AtomicStructure.cpp
400c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float'
401c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\PBGroup.h(66): warning C4305: 'initializing': truncation from 'double' to 'float'
402c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\seq_assoc.h(74): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'atomstruct::SA_AssocFailure'
403c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error'
404c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\seq_assoc.h(74): note: see declaration of 'atomstruct::SA_AssocFailure'
405C:/cygwin64/home/goddard/chimerax/build/include\pysupport/convert.h(252): warning C4244: 'return': conversion from 'double' to 'long', possible loss of data
406cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c RingCalc.cpp
407RingCalc.cpp
408c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float'
409cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c RibbonXSection.cpp
410RibbonXSection.cpp
411RibbonXSection.cpp(88): warning C4003: not enough actual parameters for macro 'import_array1'
412cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c MolResId.cpp
413MolResId.cpp
414c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float'
415cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c CoordSet.cpp
416CoordSet.cpp
417cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c ChangeTracker.cpp
418ChangeTracker.cpp
419cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c PBGroup.cpp
420PBGroup.cpp
421c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\PBGroup.h(66): warning C4305: 'initializing': truncation from 'double' to 'float'
422c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float'
423cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c Sequence.cpp
424Sequence.cpp
425c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\utility(172): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data
426c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xmemory0(737): note: see reference to function template instantiation 'std::pair<int,int>::pair<std::_Ty,__int64,void,0>(_Other1 &&,_Other2 &&) noexcept' being compiled
427 with
428 [
429 _Ty=unsigned __int64,
430 _Other1=unsigned __int64,
431 _Other2=__int64
432 ]
433c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xmemory0(737): note: see reference to function template instantiation 'std::pair<int,int>::pair<std::_Ty,__int64,void,0>(_Other1 &&,_Other2 &&) noexcept' being compiled
434 with
435 [
436 _Ty=unsigned __int64,
437 _Other1=unsigned __int64,
438 _Other2=__int64
439 ]
440c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xmemory0(857): note: see reference to function template instantiation 'void std::allocator<_Ty>::construct<_Objty,unsigned __int64,__int64>(_Objty *,unsigned __int64 &&,__int64 &&)' being compiled
441 with
442 [
443 _Ty=std::pair<int,int>,
444 _Objty=std::pair<int,int>
445 ]
446c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xmemory0(857): note: see reference to function template instantiation 'void std::allocator<_Ty>::construct<_Objty,unsigned __int64,__int64>(_Objty *,unsigned __int64 &&,__int64 &&)' being compiled
447 with
448 [
449 _Ty=std::pair<int,int>,
450 _Objty=std::pair<int,int>
451 ]
452c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xmemory0(996): note: see reference to function template instantiation 'void std::allocator_traits<_Alloc>::construct<_Ty,unsigned __int64,__int64>(std::allocator<_Ty> &,_Objty *,unsigned __int64 &&,__int64 &&)' being compiled
453 with
454 [
455 _Alloc=std::allocator<std::pair<int,int>>,
456 _Ty=std::pair<int,int>,
457 _Objty=std::pair<int,int>
458 ]
459c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xmemory0(995): note: see reference to function template instantiation 'void std::allocator_traits<_Alloc>::construct<_Ty,unsigned __int64,__int64>(std::allocator<_Ty> &,_Objty *,unsigned __int64 &&,__int64 &&)' being compiled
460 with
461 [
462 _Alloc=std::allocator<std::pair<int,int>>,
463 _Ty=std::pair<int,int>,
464 _Objty=std::pair<int,int>
465 ]
466c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\vector(930): note: see reference to function template instantiation 'void std::_Wrap_alloc<std::allocator<_Ty>>::construct<_Ty,unsigned __int64,__int64>(_Ty *,unsigned __int64 &&,__int64 &&)' being compiled
467 with
468 [
469 _Ty=std::pair<int,int>
470 ]
471c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\vector(929): note: see reference to function template instantiation 'void std::_Wrap_alloc<std::allocator<_Ty>>::construct<_Ty,unsigned __int64,__int64>(_Ty *,unsigned __int64 &&,__int64 &&)' being compiled
472 with
473 [
474 _Ty=std::pair<int,int>
475 ]
476Sequence.cpp(209): note: see reference to function template instantiation 'void std::vector<std::pair<int,int>,std::allocator<_Ty>>::emplace_back<unsigned __int64,__int64>(unsigned __int64 &&,__int64 &&)' being compiled
477 with
478 [
479 _Ty=std::pair<int,int>
480 ]
481Sequence.cpp(209): note: see reference to function template instantiation 'void std::vector<std::pair<int,int>,std::allocator<_Ty>>::emplace_back<unsigned __int64,__int64>(unsigned __int64 &&,__int64 &&)' being compiled
482 with
483 [
484 _Ty=std::pair<int,int>
485 ]
486c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\utility(172): warning C4244: 'initializing': conversion from '__int64' to 'int', possible loss of data
487cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c destruct.cpp
488destruct.cpp
489cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c Point.cpp
490Point.cpp
491cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c Pseudobond.cpp
492Pseudobond.cpp
493c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\PBGroup.h(66): warning C4305: 'initializing': truncation from 'double' to 'float'
494c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float'
495Pseudobond.cpp(32): warning C4305: '=': truncation from 'double' to 'float'
496make -C tmpl install
497make[4]: Entering directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/atomstruct_cpp/tmpl'
498cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c findres.cpp
499findres.cpp
500c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
501c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error'
502c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception'
503cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c namino.cpp
504namino.cpp
505c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
506c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error'
507c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception'
508cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c Bond.cpp
509Bond.cpp
510c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
511c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error'
512c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception'
513cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c ions.cpp
514ions.cpp
515c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
516c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error'
517c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception'
518cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c amino.cpp
519amino.cpp
520c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
521c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error'
522c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception'
523cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c Molecule.cpp
524Molecule.cpp
525c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
526c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error'
527c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception'
528cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c Residue.cpp
529Residue.cpp
530c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
531c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error'
532c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception'
533Residue.cpp(169): warning C4503: 'std::_Compressed_pair<std::less<_Kty>,std::_Compressed_pair<std::_Wrap_alloc<std::allocator<_Other>>,std::_Tree_val<std::_Tree_simple_types<std::pair<const _Kty,_Ty>>>,true>,true>::_Get_second': decorated name length exceeded, name was truncated
534 with
535 [
536 _Kty=std::string,
537 _Other=std::_Tree_node<std::pair<const std::string,tmpl::TemplateCache::ResMap>,void *>,
538 _Ty=tmpl::TemplateCache::ResMap
539 ]
540Residue.cpp(169): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::erase': decorated name length exceeded, name was truncated
541 with
542 [
543 _Kty=std::string,
544 _Ty=tmpl::TemplateCache::ResMap,
545 _Pr=std::less<std::string>,
546 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
547 ]
548Residue.cpp(169): warning C4503: 'std::_Tree_comp_alloc<_Traits>::_Myval': decorated name length exceeded, name was truncated
549 with
550 [
551 _Traits=std::_Tmap_traits<std::string,tmpl::TemplateCache::ResMap,std::less<std::string>,std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>,false>
552 ]
553Residue.cpp(169): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Tree': decorated name length exceeded, name was truncated
554 with
555 [
556 _Kty=std::string,
557 _Ty=tmpl::TemplateCache::ResMap,
558 _Pr=std::less<std::string>,
559 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
560 ]
561Residue.cpp(169): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Copy': decorated name length exceeded, name was truncated
562 with
563 [
564 _Kty=std::string,
565 _Ty=tmpl::TemplateCache::ResMap,
566 _Pr=std::less<std::string>,
567 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
568 ]
569Residue.cpp(169): warning C4503: 'std::_Tree_comp_alloc<_Traits>::_Tree_comp_alloc': decorated name length exceeded, name was truncated
570 with
571 [
572 _Traits=std::_Tmap_traits<std::string,tmpl::TemplateCache::ResMap,std::less<std::string>,std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>,false>
573 ]
574Residue.cpp(169): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Copy_nodes': decorated name length exceeded, name was truncated
575 with
576 [
577 _Kty=std::string,
578 _Ty=tmpl::TemplateCache::ResMap,
579 _Pr=std::less<std::string>,
580 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
581 ]
582Residue.cpp(169): warning C4503: 'std::allocator_traits<_Alloc>::destroy': decorated name length exceeded, name was truncated
583 with
584 [
585 _Alloc=std::allocator<std::_Tree_node<std::pair<const std::string,tmpl::TemplateCache::ResMap>,void *>>
586 ]
587Residue.cpp(169): warning C4503: 'std::allocator_traits<_Alloc>::construct': decorated name length exceeded, name was truncated
588 with
589 [
590 _Alloc=std::allocator<std::_Tree_node<std::pair<const std::string,tmpl::TemplateCache::ResMap>,void *>>
591 ]
592Residue.cpp(169): warning C4503: 'std::_Compressed_pair<std::less<_Kty>,std::_Compressed_pair<std::_Wrap_alloc<std::allocator<_Other>>,std::_Tree_val<std::_Tree_simple_types<std::pair<const _Kty,_Ty>>>,true>,true>::_Compressed_pair': decorated name length exceeded, name was truncated
593 with
594 [
595 _Kty=std::string,
596 _Other=std::_Tree_node<std::pair<const std::string,tmpl::TemplateCache::ResMap>,void *>,
597 _Ty=tmpl::TemplateCache::ResMap
598 ]
599Residue.cpp(169): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Copy_or_move': decorated name length exceeded, name was truncated
600 with
601 [
602 _Kty=std::string,
603 _Ty=tmpl::TemplateCache::ResMap,
604 _Pr=std::less<std::string>,
605 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
606 ]
607Residue.cpp(169): warning C4503: 'std::_Compressed_pair<std::_Wrap_alloc<std::allocator<_Other>>,std::_Tree_val<std::_Tree_simple_types<std::pair<const _Kty,_Ty>>>,true>::_Compressed_pair': decorated name length exceeded, name was truncated
608 with
609 [
610 _Other=std::_Tree_node<std::pair<const std::string,tmpl::TemplateCache::ResMap>,void *>,
611 _Kty=std::string,
612 _Ty=tmpl::TemplateCache::ResMap
613 ]
614Residue.cpp(169): warning C4503: 'std::_Tree_comp_alloc<_Traits>::_Buynode': decorated name length exceeded, name was truncated
615 with
616 [
617 _Traits=std::_Tmap_traits<std::string,tmpl::TemplateCache::ResMap,std::less<std::string>,std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>,false>
618 ]
619cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c TemplateCache.cpp
620TemplateCache.cpp
621c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
622c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error'
623c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception'
624TemplateCache.cpp(243): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::find': decorated name length exceeded, name was truncated
625 with
626 [
627 _Kty=std::string,
628 _Ty=tmpl::TemplateCache::ResMap,
629 _Pr=std::less<atomstruct::ResName>,
630 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
631 ]
632TemplateCache.cpp(243): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::lower_bound': decorated name length exceeded, name was truncated
633 with
634 [
635 _Kty=std::string,
636 _Ty=tmpl::TemplateCache::ResMap,
637 _Pr=std::less<atomstruct::ResName>,
638 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
639 ]
640TemplateCache.cpp(243): warning C4503: 'std::_Compressed_pair<std::less<_Kty>,std::_Compressed_pair<std::_Wrap_alloc<std::allocator<_Other>>,std::_Tree_val<std::_Tree_simple_types<std::pair<const _Kty,_Ty>>>,true>,true>::_Get_second': decorated name length exceeded, name was truncated
641 with
642 [
643 _Kty=atomstruct::ResName,
644 _Other=std::_Tree_node<std::pair<const std::string,tmpl::TemplateCache::ResMap>,void *>,
645 _Ty=tmpl::TemplateCache::ResMap
646 ]
647TemplateCache.cpp(243): warning C4503: 'std::_Tree_comp_alloc<_Traits>::_Myval': decorated name length exceeded, name was truncated
648 with
649 [
650 _Traits=std::_Tmap_traits<std::string,tmpl::TemplateCache::ResMap,std::less<atomstruct::ResName>,std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>,false>
651 ]
652TemplateCache.cpp(243): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::erase': decorated name length exceeded, name was truncated
653 with
654 [
655 _Kty=std::string,
656 _Ty=tmpl::TemplateCache::ResMap,
657 _Pr=std::less<atomstruct::ResName>,
658 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
659 ]
660TemplateCache.cpp(243): warning C4503: 'std::map<std::string,tmpl::TemplateCache::ResMap,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>::try_emplace': decorated name length exceeded, name was truncated
661 with
662 [
663 _Kty=atomstruct::ResName,
664 _Ty=tmpl::TemplateCache::ResMap
665 ]
666TemplateCache.cpp(243): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Tree': decorated name length exceeded, name was truncated
667 with
668 [
669 _Kty=std::string,
670 _Ty=tmpl::TemplateCache::ResMap,
671 _Pr=std::less<atomstruct::ResName>,
672 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
673 ]
674TemplateCache.cpp(243): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Lbound': decorated name length exceeded, name was truncated
675 with
676 [
677 _Kty=std::string,
678 _Ty=tmpl::TemplateCache::ResMap,
679 _Pr=std::less<atomstruct::ResName>,
680 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
681 ]
682TemplateCache.cpp(243): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Copy': decorated name length exceeded, name was truncated
683 with
684 [
685 _Kty=std::string,
686 _Ty=tmpl::TemplateCache::ResMap,
687 _Pr=std::less<atomstruct::ResName>,
688 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
689 ]
690TemplateCache.cpp(243): warning C4503: 'std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>::_Kfn': decorated name length exceeded, name was truncated
691 with
692 [
693 _Kty=std::string,
694 _Ty=tmpl::TemplateCache::ResMap,
695 _Pr=std::less<atomstruct::ResName>,
696 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
697 ]
698TemplateCache.cpp(243): warning C4503: 'std::map<std::string,tmpl::TemplateCache::ResMap,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>::_Try_emplace': decorated name length exceeded, name was truncated
699 with
700 [
701 _Kty=atomstruct::ResName,
702 _Ty=tmpl::TemplateCache::ResMap
703 ]
704TemplateCache.cpp(243): warning C4503: 'std::_Tree_comp_alloc<_Traits>::_Tree_comp_alloc': decorated name length exceeded, name was truncated
705 with
706 [
707 _Traits=std::_Tmap_traits<std::string,tmpl::TemplateCache::ResMap,std::less<atomstruct::ResName>,std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>,false>
708 ]
709TemplateCache.cpp(243): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Copy_nodes': decorated name length exceeded, name was truncated
710 with
711 [
712 _Kty=std::string,
713 _Ty=tmpl::TemplateCache::ResMap,
714 _Pr=std::less<atomstruct::ResName>,
715 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
716 ]
717TemplateCache.cpp(243): warning C4503: 'std::allocator_traits<_Alloc>::destroy': decorated name length exceeded, name was truncated
718 with
719 [
720 _Alloc=std::allocator<std::_Tree_node<std::pair<const std::string,tmpl::TemplateCache::ResMap>,void *>>
721 ]
722TemplateCache.cpp(243): warning C4503: 'std::allocator_traits<_Alloc>::construct': decorated name length exceeded, name was truncated
723 with
724 [
725 _Alloc=std::allocator<std::_Tree_node<std::pair<const std::string,tmpl::TemplateCache::ResMap>,void *>>
726 ]
727TemplateCache.cpp(243): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::emplace_hint': decorated name length exceeded, name was truncated
728 with
729 [
730 _Kty=std::string,
731 _Ty=tmpl::TemplateCache::ResMap,
732 _Pr=std::less<atomstruct::ResName>,
733 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
734 ]
735TemplateCache.cpp(243): warning C4503: 'std::pair<std::_Tree_iterator<std::_Tree_val<std::_Tree_simple_types<std::pair<const _Kty,_Ty>>>>,bool>::pair': decorated name length exceeded, name was truncated
736 with
737 [
738 _Kty=std::string,
739 _Ty=tmpl::TemplateCache::ResMap
740 ]
741TemplateCache.cpp(243): warning C4503: 'std::_Compressed_pair<std::less<_Kty>,std::_Compressed_pair<std::_Wrap_alloc<std::allocator<_Other>>,std::_Tree_val<std::_Tree_simple_types<std::pair<const _Kty,_Ty>>>,true>,true>::_Compressed_pair': decorated name length exceeded, name was truncated
742 with
743 [
744 _Kty=atomstruct::ResName,
745 _Other=std::_Tree_node<std::pair<const std::string,tmpl::TemplateCache::ResMap>,void *>,
746 _Ty=tmpl::TemplateCache::ResMap
747 ]
748TemplateCache.cpp(243): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Copy_or_move': decorated name length exceeded, name was truncated
749 with
750 [
751 _Kty=std::string,
752 _Ty=tmpl::TemplateCache::ResMap,
753 _Pr=std::less<atomstruct::ResName>,
754 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
755 ]
756TemplateCache.cpp(243): warning C4503: 'std::_Tree_comp_alloc<_Traits>::_Buynode': decorated name length exceeded, name was truncated
757 with
758 [
759 _Traits=std::_Tmap_traits<std::string,tmpl::TemplateCache::ResMap,std::less<atomstruct::ResName>,std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>,false>
760 ]
761TemplateCache.cpp(243): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Insert_hint': decorated name length exceeded, name was truncated
762 with
763 [
764 _Kty=std::string,
765 _Ty=tmpl::TemplateCache::ResMap,
766 _Pr=std::less<atomstruct::ResName>,
767 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
768 ]
769TemplateCache.cpp(243): warning C4503: 'std::_Compressed_pair<std::_Wrap_alloc<std::allocator<_Other>>,std::_Tree_val<std::_Tree_simple_types<std::pair<const _Kty,_Ty>>>,true>::_Compressed_pair': decorated name length exceeded, name was truncated
770 with
771 [
772 _Other=std::_Tree_node<std::pair<const std::string,tmpl::TemplateCache::ResMap>,void *>,
773 _Kty=std::string,
774 _Ty=tmpl::TemplateCache::ResMap
775 ]
776TemplateCache.cpp(243): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Insert_hint': decorated name length exceeded, name was truncated
777 with
778 [
779 _Kty=atomstruct::ResName,
780 _Ty=tmpl::TemplateCache::AtomMap,
781 _Pr=std::less<atomstruct::ResName>,
782 _Alloc=std::allocator<std::pair<const atomstruct::ResName,tmpl::TemplateCache::AtomMap>>
783 ]
784TemplateCache.cpp(243): warning C4503: 'std::_Wrap_alloc<std::allocator<_Other>>::construct': decorated name length exceeded, name was truncated
785 with
786 [
787 _Other=std::_Tree_node<std::pair<const std::string,tmpl::TemplateCache::ResMap>,void *>
788 ]
789TemplateCache.cpp(243): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Insert_at': decorated name length exceeded, name was truncated
790 with
791 [
792 _Kty=std::string,
793 _Ty=tmpl::TemplateCache::ResMap,
794 _Pr=std::less<atomstruct::ResName>,
795 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
796 ]
797TemplateCache.cpp(243): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Insert_nohint': decorated name length exceeded, name was truncated
798 with
799 [
800 _Kty=std::string,
801 _Ty=tmpl::TemplateCache::ResMap,
802 _Pr=std::less<atomstruct::ResName>,
803 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
804 ]
805TemplateCache.cpp(243): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Insert_at': decorated name length exceeded, name was truncated
806 with
807 [
808 _Kty=atomstruct::ResName,
809 _Ty=tmpl::TemplateCache::AtomMap,
810 _Pr=std::less<atomstruct::ResName>,
811 _Alloc=std::allocator<std::pair<const atomstruct::ResName,tmpl::TemplateCache::AtomMap>>
812 ]
813TemplateCache.cpp(243): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Insert_nohint': decorated name length exceeded, name was truncated
814 with
815 [
816 _Kty=atomstruct::ResName,
817 _Ty=tmpl::TemplateCache::AtomMap,
818 _Pr=std::less<atomstruct::ResName>,
819 _Alloc=std::allocator<std::pair<const atomstruct::ResName,tmpl::TemplateCache::AtomMap>>
820 ]
821TemplateCache.cpp(243): warning C4503: 'std::_Tree<std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>>::_Buynode_if_nil': decorated name length exceeded, name was truncated
822 with
823 [
824 _Kty=std::string,
825 _Ty=tmpl::TemplateCache::ResMap,
826 _Pr=std::less<atomstruct::ResName>,
827 _Alloc=std::allocator<std::pair<const std::string,tmpl::TemplateCache::ResMap>>
828 ]
829TemplateCache.cpp(243): warning C4503: 'std::allocator<_Other>::construct': decorated name length exceeded, name was truncated
830 with
831 [
832 _Other=std::_Tree_node<std::pair<const std::string,tmpl::TemplateCache::ResMap>,void *>
833 ]
834cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c Atom.cpp
835Atom.cpp
836c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
837c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error'
838c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception'
839cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c general.cpp
840general.cpp
841c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
842c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error'
843c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception'
844cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c CoordSet.cpp
845CoordSet.cpp
846c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
847c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error'
848c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception'
849cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c nucleic.cpp
850nucleic.cpp
851c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
852c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error'
853c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception'
854cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c camino.cpp
855camino.cpp
856c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
857c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error'
858c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception'
859make -C idatm install
860make[5]: Entering directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/atomstruct_cpp/tmpl/idatm'
861mkdir -p ../../../data/idatm/templates
862/home/goddard/chimerax/build/bin/rsync.convert -rlptWv templates/FORMAT templates/*.idatmres ../../../data/idatm/templates
863sending incremental file list
864A.idatmres
865ACE.idatmres
866ALA.idatmres
867ARG.idatmres
868ASN.idatmres
869ASP.idatmres
870C.idatmres
871CYS.idatmres
872DA.idatmres
873DC.idatmres
874DG.idatmres
875DT.idatmres
876FORMAT
877G.idatmres
878GLN.idatmres
879GLU.idatmres
880GLY.idatmres
881HID.idatmres
882HIE.idatmres
883HIP.idatmres
884HIS.idatmres
885HOH.idatmres
886HYP.idatmres
887ILE.idatmres
888LEU.idatmres
889LYS.idatmres
890MET.idatmres
891MSE.idatmres
892PHE.idatmres
893PRO.idatmres
894SER.idatmres
895T.idatmres
896THR.idatmres
897TRP.idatmres
898TYR.idatmres
899U.idatmres
900VAL.idatmres
901
902sent 8,561 bytes received 719 bytes 6,186.67 bytes/sec
903total size is 6,152 speedup is 0.66
904make[5]: Leaving directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/atomstruct_cpp/tmpl/idatm'
905mkdir -p ../../include/atomstruct/tmpl
906/home/goddard/chimerax/build/bin/rsync.convert -rlptWv Residue.h CoordSet.h resinternal.h residues.h resDescrip.h Coord.h Bond.h restmpl.h Molecule.h TemplateCache.h Atom.h TAexcept.h ../../include/atomstruct/tmpl
907sending incremental file list
908Atom.h
909Bond.h
910Coord.h
911CoordSet.h
912Molecule.h
913Residue.h
914TAexcept.h
915TemplateCache.h
916resDescrip.h
917residues.h
918resinternal.h
919restmpl.h
920
921sent 20,066 bytes received 244 bytes 40,620.00 bytes/sec
922total size is 19,253 speedup is 0.95
923make[4]: Leaving directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/atomstruct_cpp/tmpl'
924cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 /LD /Felibatomstruct.dll Chain.obj CompSS.obj Bond.obj Structure.obj seq_assoc.obj StructureSeq.obj Ring.obj AtomTypes.obj PBManager.obj Atom.obj Residue.obj AtomicStructure.obj RingCalc.obj RibbonXSection.obj MolResId.obj CoordSet.obj ChangeTracker.obj PBGroup.obj Sequence.obj destruct.obj Point.obj Pseudobond.obj /link /LIBPATH:'C:/cygwin64/home/goddard/chimerax/build/lib' tmpl/*.obj /LIBPATH:../lib libelement.lib libpyinstance.lib libioutil.lib libchutil.lib libappdirs.lib liblogger.lib libarrays.lib python37.lib; if [ -e libatomstruct.dll.manifest ]; then mt -nologo -manifest libatomstruct.dll.manifest -outputresource:libatomstruct.dll\;2 ; fi
925 Creating library libatomstruct.lib and object libatomstruct.exp
926ions.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VMolecule@tmpl@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance<class tmpl::Molecule>::~PythonInstance<class tmpl::Molecule>(void)) imported in function "int `public: __cdecl tmpl::Molecule::Molecule(class Molecule::dtor$7 const &)'::`1'::dtor$7" (?dtor$7@?0???0Molecule@tmpl@@QEAA@AEBV01@@Z@4HA)
927namino.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VMolecule@tmpl@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance<class tmpl::Molecule>::~PythonInstance<class tmpl::Molecule>(void)) imported in function "int `public: __cdecl tmpl::Molecule::Molecule(class Molecule::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0Molecule@tmpl@@QEAA@AEBV01@@Z@4HA)
928nucleic.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VMolecule@tmpl@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance<class tmpl::Molecule>::~PythonInstance<class tmpl::Molecule>(void)) imported in function "int `public: __cdecl tmpl::Molecule::Molecule(class Molecule::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0Molecule@tmpl@@QEAA@AEBV01@@Z@4HA)
929amino.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VMolecule@tmpl@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance<class tmpl::Molecule>::~PythonInstance<class tmpl::Molecule>(void)) imported in function "int `public: __cdecl tmpl::Molecule::Molecule(class Molecule::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0Molecule@tmpl@@QEAA@AEBV01@@Z@4HA)
930camino.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VMolecule@tmpl@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance<class tmpl::Molecule>::~PythonInstance<class tmpl::Molecule>(void)) imported in function "int `public: __cdecl tmpl::Molecule::Molecule(class Molecule::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0Molecule@tmpl@@QEAA@AEBV01@@Z@4HA)
931findres.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VMolecule@tmpl@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance<class tmpl::Molecule>::~PythonInstance<class tmpl::Molecule>(void)) imported in function "class tmpl::Residue const * __cdecl tmpl::find_template_residue(class std::basic_string<char,struct std::char_traits<char>,class std::allocator<char> > const &,bool,bool)" (?find_template_residue@tmpl@@YAPEBVResidue@1@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@_N1@Z)
932general.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VMolecule@tmpl@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance<class tmpl::Molecule>::~PythonInstance<class tmpl::Molecule>(void)) imported in function "public: class std::_Tree_iterator<class std::_Tree_val<struct std::_Tree_simple_types<struct std::pair<class std::basic_string<char,struct std::char_traits<char>,class std::allocator<char> > const ,class tmpl::Residue *> > > > __cdecl std::_Tree<class std::_Tmap_traits<class std::basic_string<char,struct std::char_traits<char>,class std::allocator<char> >,class tmpl::Residue *,struct std::less<class std::basic_string<char,struct std::char_traits<char>,class std::allocator<char> > >,class std::allocator<struct std::pair<class std::basic_string<char,struct std::char_traits<char>,class std::allocator<char> > const ,class tmpl::Residue *> >,0> >::erase(class std::_Tree_const_iterator<class std::_Tree_val<struct std::_Tree_simple_types<struct std::pair<class std::basic_string<char,struct std::char_traits<char>,class std::allocator<char> > const ,class tmpl::Residue *> > > >)" (?erase@?$_Tree@V?$_Tmap_traits@V?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@PEAVResidue@tmpl@@U?$less@V?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@@2@V?$allocator@U?$pair@$$CBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@PEAVResidue@tmpl@@@std@@@2@$0A@@std@@@std@@QEAA?AV?$_Tree_iterator@V?$_Tree_val@U?$_Tree_simple_types@U?$pair@$$CBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@PEAVResidue@tmpl@@@std@@@std@@@std@@@2@V?$_Tree_const_iterator@V?$_Tree_val@U?$_Tree_simple_types@U?$pair@$$CBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@PEAVResidue@tmpl@@@std@@@std@@@std@@@2@@Z)
933ions.obj : warning LNK4049: locally defined symbol ??_7?$PythonInstance@VMolecule@tmpl@@@pyinstance@@6B@ (const pyinstance::PythonInstance<class tmpl::Molecule>::`vftable') imported
934namino.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VMolecule@tmpl@@@pyinstance@@6B@ (const pyinstance::PythonInstance<class tmpl::Molecule>::`vftable') imported in function "class tmpl::Residue * __cdecl tmpl::init_NALA(class tmpl::Molecule *)" (?init_NALA@tmpl@@YAPEAVResidue@1@PEAVMolecule@1@@Z)
935nucleic.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VMolecule@tmpl@@@pyinstance@@6B@ (const pyinstance::PythonInstance<class tmpl::Molecule>::`vftable') imported in function "class tmpl::Residue * __cdecl tmpl::init_DA3(class tmpl::Molecule *)" (?init_DA3@tmpl@@YAPEAVResidue@1@PEAVMolecule@1@@Z)
936amino.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VMolecule@tmpl@@@pyinstance@@6B@ (const pyinstance::PythonInstance<class tmpl::Molecule>::`vftable') imported in function "public: __cdecl tmpl::Molecule::Molecule(class tmpl::Molecule const &)" (??0Molecule@tmpl@@QEAA@AEBV01@@Z)
937camino.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VMolecule@tmpl@@@pyinstance@@6B@ (const pyinstance::PythonInstance<class tmpl::Molecule>::`vftable') imported in function "class tmpl::Residue * __cdecl tmpl::init_CALA(class tmpl::Molecule *)" (?init_CALA@tmpl@@YAPEAVResidue@1@PEAVMolecule@1@@Z)
938findres.obj : warning LNK4049: locally defined symbol ??_7?$PythonInstance@VMolecule@tmpl@@@pyinstance@@6B@ (const pyinstance::PythonInstance<class tmpl::Molecule>::`vftable') imported
939general.obj : warning LNK4049: locally defined symbol ??_7?$PythonInstance@VMolecule@tmpl@@@pyinstance@@6B@ (const pyinstance::PythonInstance<class tmpl::Molecule>::`vftable') imported
940MolResId.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VChangeTracker@atomstruct@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance<class atomstruct::ChangeTracker>::~PythonInstance<class atomstruct::ChangeTracker>(void)) imported in function "int `public: __cdecl atomstruct::ChangeTracker::ChangeTracker(class ChangeTracker::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0ChangeTracker@atomstruct@@QEAA@AEBV01@@Z@4HA)
941MolResId.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VResidue@atomstruct@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance<class atomstruct::Residue>::~PythonInstance<class atomstruct::Residue>(void)) imported in function "int `public: __cdecl atomstruct::Residue::Residue(class Residue::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0Residue@atomstruct@@QEAA@AEBV01@@Z@4HA)
942MolResId.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VSequence@atomstruct@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance<class atomstruct::Sequence>::~PythonInstance<class atomstruct::Sequence>(void)) imported in function "int `public: __cdecl atomstruct::Sequence::Sequence(class Sequence::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0Sequence@atomstruct@@QEAA@AEBV01@@Z@4HA)
943MolResId.obj : warning LNK4217: locally defined symbol ?py_instance@?$PythonInstance@VSequence@atomstruct@@@pyinstance@@QEBAPEAU_object@@_N@Z (public: struct _object * __cdecl pyinstance::PythonInstance<class atomstruct::Sequence>::py_instance(bool)const ) imported in function "public: struct _object * __cdecl atomstruct::StructureSeq::py_instance(bool)" (?py_instance@StructureSeq@atomstruct@@QEAAPEAU_object@@_N@Z)
944MolResId.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VBaseManager@atomstruct@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance<class atomstruct::BaseManager>::~PythonInstance<class atomstruct::BaseManager>(void)) imported in function "int `public: __cdecl atomstruct::BaseManager::BaseManager(class BaseManager::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0BaseManager@atomstruct@@QEAA@AEBV01@@Z@4HA)
945MolResId.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VRing@atomstruct@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance<class atomstruct::Ring>::~PythonInstance<class atomstruct::Ring>(void)) imported in function "int `public: __cdecl atomstruct::Ring::Ring(class Ring::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0Ring@atomstruct@@QEAA@AEBV01@@Z@4HA)
946MolResId.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VStructure@atomstruct@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance<class atomstruct::Structure>::~PythonInstance<class atomstruct::Structure>(void)) imported in function "int `public: __cdecl atomstruct::Structure::Structure(class Structure::dtor$1 const &)'::`1'::dtor$1" (?dtor$1@?0???0Structure@atomstruct@@QEAA@AEBV01@@Z@4HA)
947MolResId.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VCoordSet@atomstruct@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance<class atomstruct::CoordSet>::~PythonInstance<class atomstruct::CoordSet>(void)) imported in function "int `public: __cdecl atomstruct::CoordSet::CoordSet(class CoordSet::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0CoordSet@atomstruct@@QEAA@AEBV01@@Z@4HA)
948MolResId.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VAtom@atomstruct@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance<class atomstruct::Atom>::~PythonInstance<class atomstruct::Atom>(void)) imported in function "int `public: __cdecl atomstruct::Atom::Atom(class Atom::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0Atom@atomstruct@@QEAA@AEBV01@@Z@4HA)
949MolResId.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VBond@atomstruct@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance<class atomstruct::Bond>::~PythonInstance<class atomstruct::Bond>(void)) imported in function "int `public: __cdecl atomstruct::Bond::Bond(class Bond::dtor$3 const &)'::`1'::dtor$3" (?dtor$3@?0???0Bond@atomstruct@@QEAA@AEBV01@@Z@4HA)
950MolResId.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VChangeTracker@atomstruct@@@pyinstance@@6B@ (const pyinstance::PythonInstance<class atomstruct::ChangeTracker>::`vftable') imported in function "public: __cdecl atomstruct::ChangeTracker::ChangeTracker(class atomstruct::ChangeTracker const &)" (??0ChangeTracker@atomstruct@@QEAA@AEBV01@@Z)
951MolResId.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VResidue@atomstruct@@@pyinstance@@6B@ (const pyinstance::PythonInstance<class atomstruct::Residue>::`vftable') imported in function "public: __cdecl atomstruct::Residue::Residue(class atomstruct::Residue const &)" (??0Residue@atomstruct@@QEAA@AEBV01@@Z)
952MolResId.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VSequence@atomstruct@@@pyinstance@@6B@ (const pyinstance::PythonInstance<class atomstruct::Sequence>::`vftable') imported in function "public: __cdecl atomstruct::Sequence::Sequence(class atomstruct::Sequence const &)" (??0Sequence@atomstruct@@QEAA@AEBV01@@Z)
953MolResId.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VBaseManager@atomstruct@@@pyinstance@@6B@ (const pyinstance::PythonInstance<class atomstruct::BaseManager>::`vftable') imported in function "public: __cdecl atomstruct::BaseManager::BaseManager(class atomstruct::BaseManager const &)" (??0BaseManager@atomstruct@@QEAA@AEBV01@@Z)
954MolResId.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VRing@atomstruct@@@pyinstance@@6B@ (const pyinstance::PythonInstance<class atomstruct::Ring>::`vftable') imported in function "public: __cdecl atomstruct::Ring::Ring(class atomstruct::Ring const &)" (??0Ring@atomstruct@@QEAA@AEBV01@@Z)
955MolResId.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VStructure@atomstruct@@@pyinstance@@6B@ (const pyinstance::PythonInstance<class atomstruct::Structure>::`vftable') imported in function "public: __cdecl atomstruct::Structure::Structure(class atomstruct::Structure const &)" (??0Structure@atomstruct@@QEAA@AEBV01@@Z)
956MolResId.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VCoordSet@atomstruct@@@pyinstance@@6B@ (const pyinstance::PythonInstance<class atomstruct::CoordSet>::`vftable') imported in function "public: __cdecl atomstruct::CoordSet::CoordSet(class atomstruct::CoordSet const &)" (??0CoordSet@atomstruct@@QEAA@AEBV01@@Z)
957MolResId.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VAtom@atomstruct@@@pyinstance@@6B@ (const pyinstance::PythonInstance<class atomstruct::Atom>::`vftable') imported in function "public: __cdecl atomstruct::Atom::Atom(class atomstruct::Atom const &)" (??0Atom@atomstruct@@QEAA@AEBV01@@Z)
958MolResId.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VBond@atomstruct@@@pyinstance@@6B@ (const pyinstance::PythonInstance<class atomstruct::Bond>::`vftable') imported in function "public: __cdecl atomstruct::Bond::Bond(class atomstruct::Bond const &)" (??0Bond@atomstruct@@QEAA@AEBV01@@Z)
959/home/goddard/chimerax/build/bin/rsync.convert -rlptWv libatomstruct.dll ../lib
960sending incremental file list
961libatomstruct.dll
962
963sent 1,741,833 bytes received 35 bytes 3,483,736.00 bytes/sec
964total size is 1,741,312 speedup is 1.00
965/home/goddard/chimerax/build/bin/rsync.convert -rlptWv libatomstruct.lib ../lib
966sending incremental file list
967libatomstruct.lib
968
969sent 724,175 bytes received 35 bytes 1,448,420.00 bytes/sec
970total size is 723,902 speedup is 1.00
971/home/goddard/chimerax/build/bin/rsync.convert -rlptWv imex.h Connection.h AtomicStructure.h session.h RibbonXSection.h MolResId.h PBManager.h CoordSet.h Structure.h ChangeTracker.h PBGroup.h polymer.h backbone.h Sequence.h Real.h destruct.h Chain.h seq_assoc.h Coord.h Bond.h Pseudobond.h Residue.h StructureSeq.h Ring.h Point.h Atom.h string_types.h Rgba.h ../include/atomstruct/
972sending incremental file list
973Atom.h
974AtomicStructure.h
975Bond.h
976Chain.h
977ChangeTracker.h
978Connection.h
979Coord.h
980CoordSet.h
981MolResId.h
982PBGroup.h
983PBManager.h
984Point.h
985Pseudobond.h
986Real.h
987Residue.h
988Rgba.h
989RibbonXSection.h
990Ring.h
991Sequence.h
992Structure.h
993StructureSeq.h
994backbone.h
995destruct.h
996imex.h
997polymer.h
998seq_assoc.h
999session.h
1000string_types.h
1001
1002sent 143,331 bytes received 548 bytes 95,919.33 bytes/sec
1003total size is 141,429 speedup is 0.98
1004make[3]: Leaving directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/atomstruct_cpp'
1005cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" -Iinclude /c molc.cpp
1006molc.cpp
1007c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float'
1008include\atomstruct/PBGroup.h(66): warning C4305: 'initializing': truncation from 'double' to 'float'
1009include\atomstruct/seq_assoc.h(74): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'atomstruct::SA_AssocFailure'
1010c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error'
1011include\atomstruct/seq_assoc.h(74): note: see declaration of 'atomstruct::SA_AssocFailure'
1012C:/cygwin64/home/goddard/chimerax/build/include\pysupport/convert.h(252): warning C4244: 'return': conversion from 'double' to 'long', possible loss of data
1013cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 /LD /Felibmolc.dll molc.obj /link /LIBPATH:'C:/cygwin64/home/goddard/chimerax/build/lib' /LIBPATH:lib libatomstruct.lib libelement.lib libpyinstance.lib libarrays.lib liblogger.lib libappdirs.lib python37.lib; if [ -e libmolc.dll.manifest ]; then mt -nologo -manifest libmolc.dll.manifest -outputresource:libmolc.dll\;2 ; fi
1014 Creating library libmolc.lib and object libmolc.exp
1015LDFLAGS="-L." /home/goddard/chimerax/build/bin/python.exe setup-cymol.py build_ext -i
1016Please put "# distutils: language=c++" in your .pyx or .pxd file(s)
1017Compiling cymol.pyx because it changed.
1018[1/1] Cythonizing cymol.pyx
1019running build_ext
1020building 'chimerax.atomic.cymol' extension
1021creating build
1022creating build\temp.win-amd64-3.7
1023creating build\temp.win-amd64-3.7\Release
1024C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\bin\amd64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -Iinclude -IC:\cygwin64\home\goddard\chimerax\build\include -IC:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include -IC:\cygwin64\home\goddard\chimerax\build\bin\include -IC:\cygwin64\home\goddard\chimerax\build\bin\include "-IC:\Program Files (x86)\Windows Kits\NETFXSDK\4.6.1\include\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.10586.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.10586.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.10586.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.10586.0\winrt" /EHsc /Tpcymol.cpp /Fobuild\temp.win-amd64-3.7\Release\cymol.obj
1025cymol.cpp
1026include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
1027c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1028include\pyinstance/PythonInstance.declare.h(93): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
1029include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
1030c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1031include\element/Element.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
1032include\element/Element.h(65): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'element::Element'
1033 with
1034 [
1035 _Kty=int
1036 ]
1037include\element/Element.h(65): note: see declaration of 'std::set<int,std::less<int>,std::allocator<_Kty>>'
1038 with
1039 [
1040 _Kty=int
1041 ]
1042include\element/Element.h(66): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'element::Element'
1043 with
1044 [
1045 _Kty=int,
1046 _Ty=const element::Element *
1047 ]
1048include\element/Element.h(66): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const _Kty,_Ty>>>'
1049 with
1050 [
1051 _Kty=int,
1052 _Ty=const element::Element *
1053 ]
1054include\element/Element.h(67): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'element::Element'
1055 with
1056 [
1057 _Kty=int
1058 ]
1059include\element/Element.h(65): note: see declaration of 'std::set<int,std::less<int>,std::allocator<_Kty>>'
1060 with
1061 [
1062 _Kty=int
1063 ]
1064include\element/Element.h(68): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'element::Element'
1065 with
1066 [
1067 _Kty=std::string
1068 ]
1069include\element/Element.h(68): note: see declaration of 'std::set<std::string,std::less<_Kty>,std::allocator<_Kty>>'
1070 with
1071 [
1072 _Kty=std::string
1073 ]
1074include\element/Element.h(69): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'element::Element'
1075 with
1076 [
1077 _Kty=int
1078 ]
1079include\element/Element.h(65): note: see declaration of 'std::set<int,std::less<int>,std::allocator<_Kty>>'
1080 with
1081 [
1082 _Kty=int
1083 ]
1084c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(48): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
1085 with
1086 [
1087 _Kty=const void *
1088 ]
1089c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(48): note: see declaration of 'std::set<const void *,std::less<_Kty>,std::allocator<_Kty>>'
1090 with
1091 [
1092 _Kty=const void *
1093 ]
1094c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(49): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
1095 with
1096 [
1097 _Kty=const void *
1098 ]
1099c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(48): note: see declaration of 'std::set<const void *,std::less<_Kty>,std::allocator<_Kty>>'
1100 with
1101 [
1102 _Kty=const void *
1103 ]
1104c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(50): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
1105 with
1106 [
1107 _Kty=std::string
1108 ]
1109include\element/Element.h(68): note: see declaration of 'std::set<std::string,std::less<_Kty>,std::allocator<_Kty>>'
1110 with
1111 [
1112 _Kty=std::string
1113 ]
1114include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
1115c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1116c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
1117c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(71): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1118 with
1119 [
1120 _Kty=atomstruct::Structure *,
1121 _Ty=atomstruct::ChangeTracker::ChangesArray
1122 ]
1123c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(71): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
1124 with
1125 [
1126 _Kty=atomstruct::Structure *,
1127 _Ty=atomstruct::ChangeTracker::ChangesArray
1128 ]
1129c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(72): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1130 with
1131 [
1132 _Kty=atomstruct::Structure *
1133 ]
1134c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(72): note: see declaration of 'std::set<atomstruct::Structure *,std::less<_Kty>,std::allocator<_Kty>>'
1135 with
1136 [
1137 _Kty=atomstruct::Structure *
1138 ]
1139c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(81): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1140c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1141c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1142c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1143c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1144c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1145c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(84): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1146c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1147c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(85): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1148c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1149c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(86): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1150c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1151c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(87): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1152c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1153c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(88): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1154c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1155c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(89): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1156c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1157c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(90): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1158c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1159c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(91): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1160c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1161c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1162c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1163c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1164c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1165c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_IS_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1166c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1167c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1168c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1169c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1170c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1171c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1172c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1173c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1174c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1175c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1176c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1177c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1178c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1179c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1180c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1181c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1182c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1183c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1184c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1185c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1186c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1187c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1188c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1189c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1190c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1191c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1192c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1193c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1194c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1195c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1196c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1197c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1198c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1199c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1200c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1201c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1202c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1203c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1204c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1205c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1206c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1207c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1208c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1209c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(288): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1210c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1211c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\destruct.h(42): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
1212 with
1213 [
1214 _Kty=atomstruct::DestructionObserver *
1215 ]
1216c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<_Kty>,std::allocator<_Kty>>'
1217 with
1218 [
1219 _Kty=atomstruct::DestructionObserver *
1220 ]
1221c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\destruct.h(43): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
1222 with
1223 [
1224 _Kty=void *
1225 ]
1226c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\destruct.h(31): note: see declaration of 'std::set<void *,std::less<_Kty>,std::allocator<_Kty>>'
1227 with
1228 [
1229 _Kty=void *
1230 ]
1231include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
1232c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1233c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(45): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
1234c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(51): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
1235 with
1236 [
1237 _Kty=std::string,
1238 _Ty=char
1239 ]
1240c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(49): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
1241 with
1242 [
1243 _Kty=std::string,
1244 _Ty=char
1245 ]
1246c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(52): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
1247 with
1248 [
1249 _Kty=std::string,
1250 _Ty=char
1251 ]
1252c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(49): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
1253 with
1254 [
1255 _Kty=std::string,
1256 _Ty=char
1257 ]
1258c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(53): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
1259 with
1260 [
1261 _Kty=std::string,
1262 _Ty=char
1263 ]
1264c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(49): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
1265 with
1266 [
1267 _Kty=std::string,
1268 _Ty=char
1269 ]
1270c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(55): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
1271 with
1272 [
1273 _Kty=unsigned int,
1274 _Ty=unsigned int
1275 ]
1276c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(55): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
1277 with
1278 [
1279 _Kty=unsigned int,
1280 _Ty=unsigned int
1281 ]
1282c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(56): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
1283 with
1284 [
1285 _Kty=unsigned int,
1286 _Ty=unsigned int
1287 ]
1288c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(55): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
1289 with
1290 [
1291 _Kty=unsigned int,
1292 _Ty=unsigned int
1293 ]
1294c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(57): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
1295c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(47): note: see declaration of 'std::vector<char,std::allocator<char>>'
1296c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(62): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
1297c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(47): note: see declaration of 'std::vector<char,std::allocator<char>>'
1298c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
1299c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1300c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(127): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
1301c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(50): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
1302c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1303c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(53): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::std::SeqPos,std::less<_Kty>,std::allocator<std::pair<const _Kty,std::_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
1304 with
1305 [
1306 _Kty=atomstruct::Residue *,
1307 _Ty=atomstruct::StructureSeq::std::SeqPos
1308 ]
1309c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(40): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::std::SeqPos,std::less<_Kty>,std::allocator<std::pair<const _Kty,std::_Ty>>>'
1310 with
1311 [
1312 _Kty=atomstruct::Residue *,
1313 _Ty=atomstruct::StructureSeq::std::SeqPos
1314 ]
1315c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(54): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
1316 with
1317 [
1318 _Ty=atomstruct::Residue *
1319 ]
1320c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(39): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<_Ty>>'
1321 with
1322 [
1323 _Ty=atomstruct::Residue *
1324 ]
1325c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(106): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
1326include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
1327c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1328c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\PBManager.h(42): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
1329c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\PBManager.h(52): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
1330 with
1331 [
1332 _Kty=std::string,
1333 _Ty=atomstruct::Proxy_PBGroup *
1334 ]
1335c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\PBManager.h(47): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
1336 with
1337 [
1338 _Kty=std::string,
1339 _Ty=atomstruct::Proxy_PBGroup *
1340 ]
1341include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
1342c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1343c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(26): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
1344c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(31): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
1345 with
1346 [
1347 _Kty=atomstruct::Bond *
1348 ]
1349c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(29): note: see declaration of 'std::set<atomstruct::Bond *,std::less<_Kty>,std::allocator<_Kty>>'
1350 with
1351 [
1352 _Kty=atomstruct::Bond *
1353 ]
1354c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(32): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
1355 with
1356 [
1357 _Kty=atomstruct::Atom *
1358 ]
1359c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(28): note: see declaration of 'std::set<atomstruct::Atom *,std::less<_Kty>,std::allocator<_Kty>>'
1360 with
1361 [
1362 _Kty=atomstruct::Atom *
1363 ]
1364include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
1365c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1366c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(96): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
1367c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(130): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
1368 with
1369 [
1370 _Kty=atomstruct::Atom *
1371 ]
1372c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(49): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<_Kty>>'
1373 with
1374 [
1375 _Kty=atomstruct::Atom *
1376 ]
1377c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(132): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
1378 with
1379 [
1380 _Kty=atomstruct::Bond *
1381 ]
1382c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(48): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<_Kty>>'
1383 with
1384 [
1385 _Kty=atomstruct::Bond *
1386 ]
1387c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(135): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
1388 with
1389 [
1390 _Ty=atomstruct::CoordSet *
1391 ]
1392c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(106): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<_Ty>>'
1393 with
1394 [
1395 _Ty=atomstruct::CoordSet *
1396 ]
1397c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(138): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<_Kty>>,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
1398 with
1399 [
1400 _Kty=std::string,
1401 _Ty=std::vector<atomstruct::ResName,std::allocator<std::string>>
1402 ]
1403c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(107): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<_Kty>>,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
1404 with
1405 [
1406 _Kty=std::string,
1407 _Ty=std::vector<atomstruct::ResName,std::allocator<std::string>>
1408 ]
1409c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
1410 with
1411 [
1412 _Ty=atomstruct::Residue *
1413 ]
1414c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(39): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<_Ty>>'
1415 with
1416 [
1417 _Ty=atomstruct::Residue *
1418 ]
1419c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
1420 with
1421 [
1422 _Kty=atomstruct::Ring
1423 ]
1424c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(115): note: see declaration of 'std::set<atomstruct::Ring,std::less<_Kty>,std::allocator<_Kty>>'
1425 with
1426 [
1427 _Kty=atomstruct::Ring
1428 ]
1429c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(241): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
1430c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1431c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(246): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<_Kty>>,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
1432 with
1433 [
1434 _Kty=std::string,
1435 _Ty=std::vector<atomstruct::ResName,std::allocator<std::string>>
1436 ]
1437c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(107): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<_Kty>>,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
1438 with
1439 [
1440 _Kty=std::string,
1441 _Ty=std::vector<atomstruct::ResName,std::allocator<std::string>>
1442 ]
1443include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
1444c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1445c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(30): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
1446c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(38): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
1447 with
1448 [
1449 _Ty=atomstruct::Coord
1450 ]
1451c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(35): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<_Ty>>'
1452 with
1453 [
1454 _Ty=atomstruct::Coord
1455 ]
1456c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(40): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<_Kty>,std::equal_to<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
1457 with
1458 [
1459 _Kty=const atomstruct::Atom *,
1460 _Ty=float
1461 ]
1462c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(40): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<_Kty>,std::equal_to<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
1463 with
1464 [
1465 _Kty=const atomstruct::Atom *,
1466 _Ty=float
1467 ]
1468c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(41): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<_Kty>,std::equal_to<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
1469 with
1470 [
1471 _Kty=const atomstruct::Atom *,
1472 _Ty=float
1473 ]
1474c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(40): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<_Kty>,std::equal_to<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
1475 with
1476 [
1477 _Kty=const atomstruct::Atom *,
1478 _Ty=float
1479 ]
1480c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(63): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
1481c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(66): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
1482include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
1483c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1484include\atomstruct/Atom.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
1485include\atomstruct/Atom.h(113): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
1486 with
1487 [
1488 _Kty=unsigned char,
1489 _Ty=atomstruct::Atom::_Alt_loc_info
1490 ]
1491include\atomstruct/Atom.h(112): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
1492 with
1493 [
1494 _Kty=unsigned char,
1495 _Ty=atomstruct::Atom::_Alt_loc_info
1496 ]
1497include\atomstruct/Atom.h(115): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
1498 with
1499 [
1500 _Kty=atomstruct::Bond *
1501 ]
1502c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(48): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<_Kty>>'
1503 with
1504 [
1505 _Kty=atomstruct::Bond *
1506 ]
1507include\atomstruct/Atom.h(116): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
1508c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\string_types.h(29): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
1509include\atomstruct/Atom.h(123): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
1510c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\string_types.h(29): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
1511include\atomstruct/Atom.h(125): warning C4251: 'atomstruct::Atom::_name': class 'chutil::CString<5,65,116,111,109,32,78,97,109,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
1512c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\string_types.h(27): note: see declaration of 'chutil::CString<5,65,116,111,109,32,78,97,109,101>'
1513include\atomstruct/Atom.h(126): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
1514 with
1515 [
1516 _Kty=atomstruct::Atom *
1517 ]
1518c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(49): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<_Kty>>'
1519 with
1520 [
1521 _Kty=atomstruct::Atom *
1522 ]
1523include\atomstruct/Atom.h(131): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
1524 with
1525 [
1526 _Ty=const atomstruct::Ring *
1527 ]
1528include\atomstruct/Atom.h(80): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<_Ty>>'
1529 with
1530 [
1531 _Ty=const atomstruct::Ring *
1532 ]
1533include\atomstruct/Atom.h(187): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
1534include\atomstruct/Atom.h(191): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
1535include\atomstruct/Atom.h(205): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
1536include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<atomstruct::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Residue>'
1537c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1538include\atomstruct/Residue.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Residue>' being compiled
1539include\atomstruct/Residue.h(69): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
1540 with
1541 [
1542 _Kty=atomstruct::Atom *
1543 ]
1544c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(49): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<_Kty>>'
1545 with
1546 [
1547 _Kty=atomstruct::Atom *
1548 ]
1549include\atomstruct/Residue.h(71): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
1550c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1551include\atomstruct/Residue.h(73): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
1552c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1553include\atomstruct/Residue.h(74): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
1554c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1555include\atomstruct/Residue.h(138): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set<atomstruct::AtomName,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
1556 with
1557 [
1558 _Kty=atomstruct::AtomName
1559 ]
1560include\atomstruct/Residue.h(138): note: see declaration of 'std::set<atomstruct::AtomName,std::less<_Kty>,std::allocator<_Kty>>'
1561 with
1562 [
1563 _Kty=atomstruct::AtomName
1564 ]
1565include\atomstruct/Residue.h(139): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector<atomstruct::AtomName,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
1566 with
1567 [
1568 _Kty=atomstruct::AtomName
1569 ]
1570include\atomstruct/Residue.h(139): note: see declaration of 'std::vector<atomstruct::AtomName,std::allocator<_Kty>>'
1571 with
1572 [
1573 _Kty=atomstruct::AtomName
1574 ]
1575include\atomstruct/Residue.h(140): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set<atomstruct::AtomName,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
1576 with
1577 [
1578 _Kty=atomstruct::AtomName
1579 ]
1580include\atomstruct/Residue.h(138): note: see declaration of 'std::set<atomstruct::AtomName,std::less<_Kty>,std::allocator<_Kty>>'
1581 with
1582 [
1583 _Kty=atomstruct::AtomName
1584 ]
1585include\atomstruct/Residue.h(141): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set<atomstruct::AtomName,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
1586 with
1587 [
1588 _Kty=atomstruct::AtomName
1589 ]
1590include\atomstruct/Residue.h(138): note: see declaration of 'std::set<atomstruct::AtomName,std::less<_Kty>,std::allocator<_Kty>>'
1591 with
1592 [
1593 _Kty=atomstruct::AtomName
1594 ]
1595include\atomstruct/Residue.h(142): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set<atomstruct::AtomName,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
1596 with
1597 [
1598 _Kty=atomstruct::AtomName
1599 ]
1600include\atomstruct/Residue.h(138): note: see declaration of 'std::set<atomstruct::AtomName,std::less<_Kty>,std::allocator<_Kty>>'
1601 with
1602 [
1603 _Kty=atomstruct::AtomName
1604 ]
1605include\atomstruct/Residue.h(143): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set<atomstruct::AtomName,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
1606 with
1607 [
1608 _Kty=atomstruct::AtomName
1609 ]
1610include\atomstruct/Residue.h(138): note: see declaration of 'std::set<atomstruct::AtomName,std::less<_Kty>,std::allocator<_Kty>>'
1611 with
1612 [
1613 _Kty=atomstruct::AtomName
1614 ]
1615include\atomstruct/Residue.h(144): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector<atomstruct::AtomName,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
1616 with
1617 [
1618 _Kty=atomstruct::AtomName
1619 ]
1620include\atomstruct/Residue.h(139): note: see declaration of 'std::vector<atomstruct::AtomName,std::allocator<_Kty>>'
1621 with
1622 [
1623 _Kty=atomstruct::AtomName
1624 ]
1625include\atomstruct/Residue.h(145): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set<atomstruct::AtomName,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
1626 with
1627 [
1628 _Kty=atomstruct::AtomName
1629 ]
1630include\atomstruct/Residue.h(138): note: see declaration of 'std::set<atomstruct::AtomName,std::less<_Kty>,std::allocator<_Kty>>'
1631 with
1632 [
1633 _Kty=atomstruct::AtomName
1634 ]
1635include\atomstruct/Residue.h(146): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set<atomstruct::AtomName,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
1636 with
1637 [
1638 _Kty=atomstruct::AtomName
1639 ]
1640include\atomstruct/Residue.h(138): note: see declaration of 'std::set<atomstruct::AtomName,std::less<_Kty>,std::allocator<_Kty>>'
1641 with
1642 [
1643 _Kty=atomstruct::AtomName
1644 ]
1645include\atomstruct/Residue.h(147): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set<atomstruct::AtomName,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
1646 with
1647 [
1648 _Kty=atomstruct::AtomName
1649 ]
1650include\atomstruct/Residue.h(138): note: see declaration of 'std::set<atomstruct::AtomName,std::less<_Kty>,std::allocator<_Kty>>'
1651 with
1652 [
1653 _Kty=atomstruct::AtomName
1654 ]
1655include\atomstruct/Residue.h(148): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set<atomstruct::AtomName,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
1656 with
1657 [
1658 _Kty=atomstruct::AtomName
1659 ]
1660include\atomstruct/Residue.h(138): note: see declaration of 'std::set<atomstruct::AtomName,std::less<_Kty>,std::allocator<_Kty>>'
1661 with
1662 [
1663 _Kty=atomstruct::AtomName
1664 ]
1665include\atomstruct/Residue.h(149): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set<std::string,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
1666 with
1667 [
1668 _Kty=std::string
1669 ]
1670include\element/Element.h(68): note: see declaration of 'std::set<std::string,std::less<_Kty>,std::allocator<_Kty>>'
1671 with
1672 [
1673 _Kty=std::string
1674 ]
1675include\atomstruct/Residue.h(150): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set<std::string,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
1676 with
1677 [
1678 _Kty=std::string
1679 ]
1680include\element/Element.h(68): note: see declaration of 'std::set<std::string,std::less<_Kty>,std::allocator<_Kty>>'
1681 with
1682 [
1683 _Kty=std::string
1684 ]
1685include\atomstruct/Residue.h(151): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map<atomstruct::ResName,std::map<atomstruct::AtomName,char,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>,std::less<std::basic_string<char,std::char_traits<char>,std::allocator<_Ty>>>,std::allocator<std::pair<const std::basic_string<char,std::char_traits<char>,std::allocator<_Ty>>,std::map<_Kty,_Ty,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue'
1686 with
1687 [
1688 _Kty=atomstruct::AtomName,
1689 _Ty=char
1690 ]
1691include\atomstruct/Residue.h(151): note: see declaration of 'std::map<atomstruct::ResName,std::map<atomstruct::AtomName,char,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>,std::less<std::basic_string<char,std::char_traits<char>,std::allocator<_Ty>>>,std::allocator<std::pair<const std::basic_string<char,std::char_traits<char>,std::allocator<_Ty>>,std::map<_Kty,_Ty,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>>>>'
1692 with
1693 [
1694 _Kty=atomstruct::AtomName,
1695 _Ty=char
1696 ]
1697include\atomstruct/Residue.h(117): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
1698c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float'
1699c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Connection.h(85): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning)
1700c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Connection.h(87): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning)
1701c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Connection.h(88): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning)
1702include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<atomstruct::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Bond>'
1703c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1704c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Bond.h(36): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Bond>' being compiled
1705c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Bond.h(48): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond'
1706 with
1707 [
1708 _Ty=const atomstruct::Ring *
1709 ]
1710include\atomstruct/Atom.h(80): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<_Ty>>'
1711 with
1712 [
1713 _Ty=const atomstruct::Ring *
1714 ]
1715c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Bond.h(116): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data
1716cymol.cpp(3856): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data
1717cymol.cpp(6353): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning)
1718cymol.cpp(8041): warning C4267: 'argument': conversion from 'size_t' to 'int', possible loss of data
1719cymol.cpp(8943): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning)
1720cymol.cpp(10146): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data
1721cymol.cpp(10855): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data
1722cymol.cpp(11151): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning)
1723cymol.cpp(11152): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning)
1724cymol.cpp(11153): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning)
1725cymol.cpp(11471): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning)
1726cymol.cpp(11732): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning)
1727cymol.cpp(11733): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data
1728cymol.cpp(18956): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data
1729cymol.cpp(19109): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning)
1730cymol.cpp(19261): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning)
1731cymol.cpp(23062): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning)
1732cymol.cpp(23214): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning)
1733cymol.cpp(23660): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning)
1734cymol.cpp(24225): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning)
1735cymol.cpp(26263): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data
1736creating C:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\chimerax
1737creating C:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\chimerax\atomic
1738C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\bin\amd64\link.exe /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:lib /LIBPATH:C:\cygwin64\home\goddard\chimerax\build\lib /LIBPATH:C:\cygwin64\home\goddard\chimerax\build\bin\libs /LIBPATH:C:\cygwin64\home\goddard\chimerax\build\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\NETFXSDK\4.6.1\lib\um\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.16299.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.16299.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\lib\amd64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\atlmfc\lib\amd64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.10586.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.10586.0\um\x64" libatomstruct.lib libelement.lib /EXPORT:PyInit_cymol build\temp.win-amd64-3.7\Release\cymol.obj /OUT:C:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\chimerax\atomic\cymol.cp37-win_amd64.pyd /IMPLIB:build\temp.win-amd64-3.7\Release\cymol.cp37-win_amd64.lib
1739cymol.obj : warning LNK4197: export 'PyInit_cymol' specified multiple times; using first specification
1740 Creating library build\temp.win-amd64-3.7\Release\cymol.cp37-win_amd64.lib and object build\temp.win-amd64-3.7\Release\cymol.cp37-win_amd64.exp
1741Generating code
1742Finished generating code
1743mv chimerax/atomic/cymol.cp*.pyd cymol.pyd
1744rmdir -p chimerax/atomic
1745LDFLAGS="-L." /home/goddard/chimerax/build/bin/python.exe setup-cytmpl.py build_ext -i
1746Please put "# distutils: language=c++" in your .pyx or .pxd file(s)
1747Compiling cytmpl.pyx because it changed.
1748[1/1] Cythonizing cytmpl.pyx
1749running build_ext
1750building 'chimerax.atomic.cytmpl' extension
1751C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\bin\amd64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -Iinclude -IC:\cygwin64\home\goddard\chimerax\build\include -IC:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include -IC:\cygwin64\home\goddard\chimerax\build\bin\include -IC:\cygwin64\home\goddard\chimerax\build\bin\include "-IC:\Program Files (x86)\Windows Kits\NETFXSDK\4.6.1\include\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.10586.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.10586.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.10586.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.10586.0\winrt" /EHsc /Tpcytmpl.cpp /Fobuild\temp.win-amd64-3.7\Release\cytmpl.obj
1752cytmpl.cpp
1753include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<C>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<C>'
1754c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1755include\pyinstance/PythonInstance.declare.h(93): note: see reference to class template instantiation 'pyinstance::PythonInstance<C>' being compiled
1756include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<element::Element>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<element::Element>'
1757c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1758include\element/Element.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance<element::Element>' being compiled
1759include\element/Element.h(65): warning C4251: 'element::Element::_alkali_metals': class 'std::set<int,std::less<int>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'element::Element'
1760 with
1761 [
1762 _Kty=int
1763 ]
1764include\element/Element.h(65): note: see declaration of 'std::set<int,std::less<int>,std::allocator<_Kty>>'
1765 with
1766 [
1767 _Kty=int
1768 ]
1769include\element/Element.h(66): warning C4251: 'element::Element::_elements': class 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'element::Element'
1770 with
1771 [
1772 _Kty=int,
1773 _Ty=const element::Element *
1774 ]
1775include\element/Element.h(66): note: see declaration of 'std::map<int,const element::Element *,std::less<int>,std::allocator<std::pair<const _Kty,_Ty>>>'
1776 with
1777 [
1778 _Kty=int,
1779 _Ty=const element::Element *
1780 ]
1781include\element/Element.h(67): warning C4251: 'element::Element::_halogens': class 'std::set<int,std::less<int>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'element::Element'
1782 with
1783 [
1784 _Kty=int
1785 ]
1786include\element/Element.h(65): note: see declaration of 'std::set<int,std::less<int>,std::allocator<_Kty>>'
1787 with
1788 [
1789 _Kty=int
1790 ]
1791include\element/Element.h(68): warning C4251: 'element::Element::_names': class 'std::set<std::string,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'element::Element'
1792 with
1793 [
1794 _Kty=std::string
1795 ]
1796include\element/Element.h(68): note: see declaration of 'std::set<std::string,std::less<_Kty>,std::allocator<_Kty>>'
1797 with
1798 [
1799 _Kty=std::string
1800 ]
1801include\element/Element.h(69): warning C4251: 'element::Element::_noble_gases': class 'std::set<int,std::less<int>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'element::Element'
1802 with
1803 [
1804 _Kty=int
1805 ]
1806include\element/Element.h(65): note: see declaration of 'std::set<int,std::less<int>,std::allocator<_Kty>>'
1807 with
1808 [
1809 _Kty=int
1810 ]
1811c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(48): warning C4251: 'atomstruct::Changes::created': class 'std::set<const void *,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
1812 with
1813 [
1814 _Kty=const void *
1815 ]
1816c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(48): note: see declaration of 'std::set<const void *,std::less<_Kty>,std::allocator<_Kty>>'
1817 with
1818 [
1819 _Kty=const void *
1820 ]
1821c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(49): warning C4251: 'atomstruct::Changes::modified': class 'std::set<const void *,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
1822 with
1823 [
1824 _Kty=const void *
1825 ]
1826c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(48): note: see declaration of 'std::set<const void *,std::less<_Kty>,std::allocator<_Kty>>'
1827 with
1828 [
1829 _Kty=const void *
1830 ]
1831c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(50): warning C4251: 'atomstruct::Changes::reasons': class 'std::set<std::string,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes'
1832 with
1833 [
1834 _Kty=std::string
1835 ]
1836include\element/Element.h(68): note: see declaration of 'std::set<std::string,std::less<_Kty>,std::allocator<_Kty>>'
1837 with
1838 [
1839 _Kty=std::string
1840 ]
1841include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<atomstruct::ChangeTracker>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::ChangeTracker>'
1842c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1843c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::ChangeTracker>' being compiled
1844c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(71): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1845 with
1846 [
1847 _Kty=atomstruct::Structure *,
1848 _Ty=atomstruct::ChangeTracker::ChangesArray
1849 ]
1850c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(71): note: see declaration of 'std::map<atomstruct::Structure *,atomstruct::ChangeTracker::ChangesArray,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
1851 with
1852 [
1853 _Kty=atomstruct::Structure *,
1854 _Ty=atomstruct::ChangeTracker::ChangesArray
1855 ]
1856c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(72): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set<atomstruct::Structure *,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1857 with
1858 [
1859 _Kty=atomstruct::Structure *
1860 ]
1861c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(72): note: see declaration of 'std::set<atomstruct::Structure *,std::less<_Kty>,std::allocator<_Kty>>'
1862 with
1863 [
1864 _Kty=atomstruct::Structure *
1865 ]
1866c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(81): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1867c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1868c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1869c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1870c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1871c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1872c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(84): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1873c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1874c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(85): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1875c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1876c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(86): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1877c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1878c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(87): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1879c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1880c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(88): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1881c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1882c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(89): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1883c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1884c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(90): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1885c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1886c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(91): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1887c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1888c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1889c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1890c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1891c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1892c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_IS_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1893c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1894c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1895c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1896c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1897c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1898c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1899c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1900c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1901c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1902c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1903c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1904c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1905c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1906c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1907c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1908c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1909c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1910c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1911c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1912c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1913c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1914c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1915c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1916c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1917c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1918c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1919c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1920c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1921c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1922c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1923c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1924c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1925c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1926c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1927c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1928c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1929c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1930c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1931c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1932c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1933c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1934c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1935c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1936c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(288): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker'
1937c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1938c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\destruct.h(42): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set<atomstruct::DestructionObserver *,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
1939 with
1940 [
1941 _Kty=atomstruct::DestructionObserver *
1942 ]
1943c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\destruct.h(42): note: see declaration of 'std::set<atomstruct::DestructionObserver *,std::less<_Kty>,std::allocator<_Kty>>'
1944 with
1945 [
1946 _Kty=atomstruct::DestructionObserver *
1947 ]
1948c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\destruct.h(43): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set<void *,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator'
1949 with
1950 [
1951 _Kty=void *
1952 ]
1953c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\destruct.h(31): note: see declaration of 'std::set<void *,std::less<_Kty>,std::allocator<_Kty>>'
1954 with
1955 [
1956 _Kty=void *
1957 ]
1958include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<atomstruct::Sequence>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Sequence>'
1959c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
1960c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(45): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Sequence>' being compiled
1961c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(51): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map<atomstruct::ResName,char,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
1962 with
1963 [
1964 _Kty=std::string,
1965 _Ty=char
1966 ]
1967c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(49): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
1968 with
1969 [
1970 _Kty=std::string,
1971 _Ty=char
1972 ]
1973c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(52): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map<atomstruct::ResName,char,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
1974 with
1975 [
1976 _Kty=std::string,
1977 _Ty=char
1978 ]
1979c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(49): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
1980 with
1981 [
1982 _Kty=std::string,
1983 _Ty=char
1984 ]
1985c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(53): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map<atomstruct::ResName,char,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
1986 with
1987 [
1988 _Kty=std::string,
1989 _Ty=char
1990 ]
1991c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(49): note: see declaration of 'std::map<atomstruct::ResName,char,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
1992 with
1993 [
1994 _Kty=std::string,
1995 _Ty=char
1996 ]
1997c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(55): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map<unsigned int,unsigned int,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
1998 with
1999 [
2000 _Kty=unsigned int,
2001 _Ty=unsigned int
2002 ]
2003c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(55): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
2004 with
2005 [
2006 _Kty=unsigned int,
2007 _Ty=unsigned int
2008 ]
2009c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(56): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map<unsigned int,unsigned int,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
2010 with
2011 [
2012 _Kty=unsigned int,
2013 _Ty=unsigned int
2014 ]
2015c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(55): note: see declaration of 'std::map<unsigned int,unsigned int,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
2016 with
2017 [
2018 _Kty=unsigned int,
2019 _Ty=unsigned int
2020 ]
2021c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(57): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
2022c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(47): note: see declaration of 'std::vector<char,std::allocator<char>>'
2023c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(62): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector<char,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
2024c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(47): note: see declaration of 'std::vector<char,std::allocator<char>>'
2025c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence'
2026c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
2027c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(127): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
2028c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(50): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
2029c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
2030c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(53): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::std::SeqPos,std::less<_Kty>,std::allocator<std::pair<const _Kty,std::_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
2031 with
2032 [
2033 _Kty=atomstruct::Residue *,
2034 _Ty=atomstruct::StructureSeq::std::SeqPos
2035 ]
2036c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(40): note: see declaration of 'std::map<atomstruct::Residue *,atomstruct::StructureSeq::std::SeqPos,std::less<_Kty>,std::allocator<std::pair<const _Kty,std::_Ty>>>'
2037 with
2038 [
2039 _Kty=atomstruct::Residue *,
2040 _Ty=atomstruct::StructureSeq::std::SeqPos
2041 ]
2042c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(54): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq'
2043 with
2044 [
2045 _Ty=atomstruct::Residue *
2046 ]
2047c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(39): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<_Ty>>'
2048 with
2049 [
2050 _Ty=atomstruct::Residue *
2051 ]
2052c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(106): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
2053include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<atomstruct::BaseManager>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::BaseManager>'
2054c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
2055c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\PBManager.h(42): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::BaseManager>' being compiled
2056c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\PBManager.h(52): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager'
2057 with
2058 [
2059 _Kty=std::string,
2060 _Ty=atomstruct::Proxy_PBGroup *
2061 ]
2062c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\PBManager.h(47): note: see declaration of 'std::map<std::string,atomstruct::Proxy_PBGroup *,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
2063 with
2064 [
2065 _Kty=std::string,
2066 _Ty=atomstruct::Proxy_PBGroup *
2067 ]
2068include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<atomstruct::Ring>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Ring>'
2069c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
2070c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(26): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Ring>' being compiled
2071c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(31): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set<atomstruct::Bond *,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
2072 with
2073 [
2074 _Kty=atomstruct::Bond *
2075 ]
2076c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(29): note: see declaration of 'std::set<atomstruct::Bond *,std::less<_Kty>,std::allocator<_Kty>>'
2077 with
2078 [
2079 _Kty=atomstruct::Bond *
2080 ]
2081c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(32): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set<atomstruct::Atom *,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring'
2082 with
2083 [
2084 _Kty=atomstruct::Atom *
2085 ]
2086c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(28): note: see declaration of 'std::set<atomstruct::Atom *,std::less<_Kty>,std::allocator<_Kty>>'
2087 with
2088 [
2089 _Kty=atomstruct::Atom *
2090 ]
2091include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<atomstruct::Structure>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Structure>'
2092c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
2093c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(96): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Structure>' being compiled
2094c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(130): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector<atomstruct::Atom *,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
2095 with
2096 [
2097 _Kty=atomstruct::Atom *
2098 ]
2099c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(49): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<_Kty>>'
2100 with
2101 [
2102 _Kty=atomstruct::Atom *
2103 ]
2104c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(132): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
2105 with
2106 [
2107 _Kty=atomstruct::Bond *
2108 ]
2109c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(48): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<_Kty>>'
2110 with
2111 [
2112 _Kty=atomstruct::Bond *
2113 ]
2114c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(135): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector<atomstruct::CoordSet *,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
2115 with
2116 [
2117 _Ty=atomstruct::CoordSet *
2118 ]
2119c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(106): note: see declaration of 'std::vector<atomstruct::CoordSet *,std::allocator<_Ty>>'
2120 with
2121 [
2122 _Ty=atomstruct::CoordSet *
2123 ]
2124c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(138): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<_Kty>>,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
2125 with
2126 [
2127 _Kty=std::string,
2128 _Ty=std::vector<atomstruct::ResName,std::allocator<std::string>>
2129 ]
2130c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(107): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<_Kty>>,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
2131 with
2132 [
2133 _Kty=std::string,
2134 _Ty=std::vector<atomstruct::ResName,std::allocator<std::string>>
2135 ]
2136c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector<atomstruct::Residue *,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
2137 with
2138 [
2139 _Ty=atomstruct::Residue *
2140 ]
2141c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(39): note: see declaration of 'std::vector<atomstruct::Residue *,std::allocator<_Ty>>'
2142 with
2143 [
2144 _Ty=atomstruct::Residue *
2145 ]
2146c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_rings': class 'std::set<atomstruct::Ring,std::less<_Kty>,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
2147 with
2148 [
2149 _Kty=atomstruct::Ring
2150 ]
2151c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(115): note: see declaration of 'std::set<atomstruct::Ring,std::less<_Kty>,std::allocator<_Kty>>'
2152 with
2153 [
2154 _Kty=atomstruct::Ring
2155 ]
2156c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(241): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
2157c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
2158c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(246): warning C4251: 'atomstruct::Structure::metadata': class 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<_Kty>>,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure'
2159 with
2160 [
2161 _Kty=std::string,
2162 _Ty=std::vector<atomstruct::ResName,std::allocator<std::string>>
2163 ]
2164c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(107): note: see declaration of 'std::map<atomstruct::ChainID,std::vector<atomstruct::ResName,std::allocator<_Kty>>,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
2165 with
2166 [
2167 _Kty=std::string,
2168 _Ty=std::vector<atomstruct::ResName,std::allocator<std::string>>
2169 ]
2170include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<atomstruct::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::CoordSet>'
2171c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
2172c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(30): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::CoordSet>' being compiled
2173c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(38): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
2174 with
2175 [
2176 _Ty=atomstruct::Coord
2177 ]
2178c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(35): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<_Ty>>'
2179 with
2180 [
2181 _Ty=atomstruct::Coord
2182 ]
2183c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(40): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<_Kty>,std::equal_to<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
2184 with
2185 [
2186 _Kty=const atomstruct::Atom *,
2187 _Ty=float
2188 ]
2189c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(40): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<_Kty>,std::equal_to<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
2190 with
2191 [
2192 _Kty=const atomstruct::Atom *,
2193 _Ty=float
2194 ]
2195c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(41): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map<const atomstruct::Atom *,float,std::hash<_Kty>,std::equal_to<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet'
2196 with
2197 [
2198 _Kty=const atomstruct::Atom *,
2199 _Ty=float
2200 ]
2201c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(40): note: see declaration of 'std::unordered_map<const atomstruct::Atom *,float,std::hash<_Kty>,std::equal_to<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
2202 with
2203 [
2204 _Kty=const atomstruct::Atom *,
2205 _Ty=float
2206 ]
2207c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(63): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
2208c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(66): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
2209include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<atomstruct::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<atomstruct::Atom>'
2210c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
2211include\atomstruct/Atom.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance<atomstruct::Atom>' being compiled
2212include\atomstruct/Atom.h(113): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
2213 with
2214 [
2215 _Kty=unsigned char,
2216 _Ty=atomstruct::Atom::_Alt_loc_info
2217 ]
2218include\atomstruct/Atom.h(112): note: see declaration of 'std::map<unsigned char,atomstruct::Atom::_Alt_loc_info,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
2219 with
2220 [
2221 _Kty=unsigned char,
2222 _Ty=atomstruct::Atom::_Alt_loc_info
2223 ]
2224include\atomstruct/Atom.h(115): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector<atomstruct::Bond *,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
2225 with
2226 [
2227 _Kty=atomstruct::Bond *
2228 ]
2229c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(48): note: see declaration of 'std::vector<atomstruct::Bond *,std::allocator<_Kty>>'
2230 with
2231 [
2232 _Kty=atomstruct::Bond *
2233 ]
2234include\atomstruct/Atom.h(116): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
2235c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\string_types.h(29): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
2236include\atomstruct/Atom.h(123): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
2237c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\string_types.h(29): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
2238include\atomstruct/Atom.h(125): warning C4251: 'atomstruct::Atom::_name': class 'chutil::CString<5,65,116,111,109,32,78,97,109,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
2239c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\string_types.h(27): note: see declaration of 'chutil::CString<5,65,116,111,109,32,78,97,109,101>'
2240include\atomstruct/Atom.h(126): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector<atomstruct::Atom *,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
2241 with
2242 [
2243 _Kty=atomstruct::Atom *
2244 ]
2245c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(49): note: see declaration of 'std::vector<atomstruct::Atom *,std::allocator<_Kty>>'
2246 with
2247 [
2248 _Kty=atomstruct::Atom *
2249 ]
2250include\atomstruct/Atom.h(131): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector<const atomstruct::Ring *,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom'
2251 with
2252 [
2253 _Ty=const atomstruct::Ring *
2254 ]
2255include\atomstruct/Atom.h(80): note: see declaration of 'std::vector<const atomstruct::Ring *,std::allocator<_Ty>>'
2256 with
2257 [
2258 _Ty=const atomstruct::Ring *
2259 ]
2260include\atomstruct/Atom.h(187): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
2261include\atomstruct/Atom.h(191): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data
2262include\atomstruct/Atom.h(205): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data
2263include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<tmpl::CoordSet>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::CoordSet>'
2264c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
2265c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\CoordSet.h(28): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::CoordSet>' being compiled
2266c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\CoordSet.h(33): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector<atomstruct::Coord,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet'
2267 with
2268 [
2269 _Ty=atomstruct::Coord
2270 ]
2271c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(35): note: see declaration of 'std::vector<atomstruct::Coord,std::allocator<_Ty>>'
2272 with
2273 [
2274 _Ty=atomstruct::Coord
2275 ]
2276include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<tmpl::Atom>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Atom>'
2277c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
2278include\atomstruct/tmpl/Atom.h(37): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Atom>' being compiled
2279include\atomstruct/tmpl/Atom.h(47): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector<tmpl::Bond *,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
2280 with
2281 [
2282 _Ty=tmpl::Bond *
2283 ]
2284include\atomstruct/tmpl/Atom.h(39): note: see declaration of 'std::vector<tmpl::Bond *,std::allocator<_Ty>>'
2285 with
2286 [
2287 _Ty=tmpl::Bond *
2288 ]
2289include\atomstruct/tmpl/Atom.h(49): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
2290c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\string_types.h(29): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>'
2291include\atomstruct/tmpl/Atom.h(52): warning C4251: 'tmpl::Atom::_name': class 'chutil::CString<5,65,116,111,109,32,78,97,109,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
2292c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\string_types.h(27): note: see declaration of 'chutil::CString<5,65,116,111,109,32,78,97,109,101>'
2293include\atomstruct/tmpl/Atom.h(53): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector<tmpl::Atom *,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'tmpl::Atom'
2294 with
2295 [
2296 _Ty=tmpl::Atom *
2297 ]
2298include\atomstruct/tmpl/Atom.h(40): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<_Ty>>'
2299 with
2300 [
2301 _Ty=tmpl::Atom *
2302 ]
2303include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<tmpl::Bond>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Bond>'
2304c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
2305c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Bond.h(28): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Bond>' being compiled
2306c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception'
2307c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error'
2308c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception'
2309include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<tmpl::Residue>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Residue>'
2310c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
2311c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Residue.h(34): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Residue>' being compiled
2312c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Residue.h(71): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
2313c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
2314c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Residue.h(72): warning C4251: 'tmpl::Residue::_atoms': class 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
2315 with
2316 [
2317 _Kty=atomstruct::AtomName,
2318 _Ty=tmpl::Atom *
2319 ]
2320c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Residue.h(65): note: see declaration of 'std::map<atomstruct::AtomName,tmpl::Atom *,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
2321 with
2322 [
2323 _Kty=atomstruct::AtomName,
2324 _Ty=tmpl::Atom *
2325 ]
2326c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Residue.h(74): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
2327c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
2328c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Residue.h(75): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector<tmpl::Atom *,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue'
2329 with
2330 [
2331 _Ty=tmpl::Atom *
2332 ]
2333c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Atom.h(40): note: see declaration of 'std::vector<tmpl::Atom *,std::allocator<_Ty>>'
2334 with
2335 [
2336 _Ty=tmpl::Atom *
2337 ]
2338include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance<tmpl::Molecule>::_buffer': class 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance<tmpl::Molecule>'
2339c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string<char,std::char_traits<char>,std::allocator<char>>'
2340c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Molecule.h(37): note: see reference to class template instantiation 'pyinstance::PythonInstance<tmpl::Molecule>' being compiled
2341c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Molecule.h(46): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set<tmpl::Atom *,std::less<_Kty>,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
2342 with
2343 [
2344 _Kty=tmpl::Atom *,
2345 _Ty=tmpl::Atom *
2346 ]
2347c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Molecule.h(41): note: see declaration of 'std::set<tmpl::Atom *,std::less<_Kty>,std::allocator<_Ty>>'
2348 with
2349 [
2350 _Kty=tmpl::Atom *,
2351 _Ty=tmpl::Atom *
2352 ]
2353c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Molecule.h(47): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set<tmpl::Bond *,std::less<_Kty>,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
2354 with
2355 [
2356 _Kty=tmpl::Bond *,
2357 _Ty=tmpl::Bond *
2358 ]
2359c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Molecule.h(42): note: see declaration of 'std::set<tmpl::Bond *,std::less<_Kty>,std::allocator<_Ty>>'
2360 with
2361 [
2362 _Kty=tmpl::Bond *,
2363 _Ty=tmpl::Bond *
2364 ]
2365c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Molecule.h(48): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector<tmpl::CoordSet *,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
2366 with
2367 [
2368 _Ty=tmpl::CoordSet *
2369 ]
2370c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Molecule.h(43): note: see declaration of 'std::vector<tmpl::CoordSet *,std::allocator<_Ty>>'
2371 with
2372 [
2373 _Ty=tmpl::CoordSet *
2374 ]
2375c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Molecule.h(49): warning C4251: 'tmpl::Molecule::_residues': class 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule'
2376 with
2377 [
2378 _Kty=std::string,
2379 _Ty=tmpl::Residue *
2380 ]
2381c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Molecule.h(44): note: see declaration of 'std::map<atomstruct::ResName,tmpl::Residue *,std::less<_Kty>,std::allocator<std::pair<const _Kty,_Ty>>>'
2382 with
2383 [
2384 _Kty=std::string,
2385 _Ty=tmpl::Residue *
2386 ]
2387cytmpl.cpp(2025): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning)
2388cytmpl.cpp(2026): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning)
2389creating C:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\chimerax
2390creating C:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\chimerax\atomic
2391C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\bin\amd64\link.exe /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:lib /LIBPATH:C:\cygwin64\home\goddard\chimerax\build\lib /LIBPATH:C:\cygwin64\home\goddard\chimerax\build\bin\libs /LIBPATH:C:\cygwin64\home\goddard\chimerax\build\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\NETFXSDK\4.6.1\lib\um\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.16299.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.16299.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\lib\amd64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\atlmfc\lib\amd64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.10586.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.10586.0\um\x64" libatomstruct.lib libelement.lib /EXPORT:PyInit_cytmpl build\temp.win-amd64-3.7\Release\cytmpl.obj /OUT:C:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\chimerax\atomic\cytmpl.cp37-win_amd64.pyd /IMPLIB:build\temp.win-amd64-3.7\Release\cytmpl.cp37-win_amd64.lib
2392cytmpl.obj : warning LNK4197: export 'PyInit_cytmpl' specified multiple times; using first specification
2393 Creating library build\temp.win-amd64-3.7\Release\cytmpl.cp37-win_amd64.lib and object build\temp.win-amd64-3.7\Release\cytmpl.cp37-win_amd64.exp
2394Generating code
2395Finished generating code
2396mv chimerax/atomic/cytmpl.cp*.pyd cytmpl.pyd
2397rmdir -p chimerax/atomic
2398/home/goddard/chimerax/build/bin/rsync.convert -rlptWv libmolc.dll cymol.pyd cymol.pyx cytmpl.pyd cytmpl.pyx data include lib ../src
2399sending incremental file list
2400cymol.pyd
2401cymol.pyx
2402cytmpl.pyd
2403cytmpl.pyx
2404libmolc.dll
2405data/
2406data/idatm/
2407data/idatm/templates/
2408data/idatm/templates/A.idatmres
2409data/idatm/templates/ACE.idatmres
2410data/idatm/templates/ALA.idatmres
2411data/idatm/templates/ARG.idatmres
2412data/idatm/templates/ASN.idatmres
2413data/idatm/templates/ASP.idatmres
2414data/idatm/templates/C.idatmres
2415data/idatm/templates/CYS.idatmres
2416data/idatm/templates/DA.idatmres
2417data/idatm/templates/DC.idatmres
2418data/idatm/templates/DG.idatmres
2419data/idatm/templates/DT.idatmres
2420data/idatm/templates/FORMAT
2421data/idatm/templates/G.idatmres
2422data/idatm/templates/GLN.idatmres
2423data/idatm/templates/GLU.idatmres
2424data/idatm/templates/GLY.idatmres
2425data/idatm/templates/HID.idatmres
2426data/idatm/templates/HIE.idatmres
2427data/idatm/templates/HIP.idatmres
2428data/idatm/templates/HIS.idatmres
2429data/idatm/templates/HOH.idatmres
2430data/idatm/templates/HYP.idatmres
2431data/idatm/templates/ILE.idatmres
2432data/idatm/templates/LEU.idatmres
2433data/idatm/templates/LYS.idatmres
2434data/idatm/templates/MET.idatmres
2435data/idatm/templates/MSE.idatmres
2436data/idatm/templates/PHE.idatmres
2437data/idatm/templates/PRO.idatmres
2438data/idatm/templates/SER.idatmres
2439data/idatm/templates/T.idatmres
2440data/idatm/templates/THR.idatmres
2441data/idatm/templates/TRP.idatmres
2442data/idatm/templates/TYR.idatmres
2443data/idatm/templates/U.idatmres
2444data/idatm/templates/VAL.idatmres
2445include/
2446include/atomic/
2447include/atomic/ctypes_pyinst.h
2448include/atomstruct/
2449include/atomstruct/Atom.h
2450include/atomstruct/AtomicStructure.h
2451include/atomstruct/Bond.h
2452include/atomstruct/Chain.h
2453include/atomstruct/ChangeTracker.h
2454include/atomstruct/Connection.h
2455include/atomstruct/Coord.h
2456include/atomstruct/CoordSet.h
2457include/atomstruct/MolResId.h
2458include/atomstruct/PBGroup.h
2459include/atomstruct/PBManager.h
2460include/atomstruct/Point.h
2461include/atomstruct/Pseudobond.h
2462include/atomstruct/Real.h
2463include/atomstruct/Residue.h
2464include/atomstruct/Rgba.h
2465include/atomstruct/RibbonXSection.h
2466include/atomstruct/Ring.h
2467include/atomstruct/Sequence.h
2468include/atomstruct/Structure.h
2469include/atomstruct/StructureSeq.h
2470include/atomstruct/backbone.h
2471include/atomstruct/destruct.h
2472include/atomstruct/imex.h
2473include/atomstruct/polymer.h
2474include/atomstruct/seq_assoc.h
2475include/atomstruct/session.h
2476include/atomstruct/string_types.h
2477include/atomstruct/tmpl/
2478include/atomstruct/tmpl/Atom.h
2479include/atomstruct/tmpl/Bond.h
2480include/atomstruct/tmpl/Coord.h
2481include/atomstruct/tmpl/CoordSet.h
2482include/atomstruct/tmpl/Molecule.h
2483include/atomstruct/tmpl/Residue.h
2484include/atomstruct/tmpl/TAexcept.h
2485include/atomstruct/tmpl/TemplateCache.h
2486include/atomstruct/tmpl/resDescrip.h
2487include/atomstruct/tmpl/residues.h
2488include/atomstruct/tmpl/resinternal.h
2489include/atomstruct/tmpl/restmpl.h
2490include/element/
2491include/element/Element.h
2492include/element/imex.h
2493include/pyinstance/
2494include/pyinstance/PythonInstance.declare.h
2495include/pyinstance/PythonInstance.instantiate.h
2496include/pyinstance/imex.h
2497include/pyinstance/imex.map.h
2498lib/
2499lib/libatomstruct.dll
2500lib/libatomstruct.lib
2501lib/libelement.dll
2502lib/libelement.lib
2503lib/libpyinstance.dll
2504lib/libpyinstance.lib
2505
2506sent 3,706,128 bytes received 1,881 bytes 7,416,018.00 bytes/sec
2507total size is 3,698,599 speedup is 1.00
2508make[2]: Leaving directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp'
2509make[1]: Leaving directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp'
2510../../../ChimeraX.app/bin/ChimeraX.exe --nogui --safemode --exit --cmd "devel install . user false exit true test false"
2511INFO:
2512Executing: devel install . user false exit true test false
2513running build
2514running build_py
2515creating build
2516creating build\lib
2517creating build\lib\chimerax
2518creating build\lib\chimerax\atomic
2519copying src\args.py -> build\lib\chimerax\atomic
2520copying src\attr_registration.py -> build\lib\chimerax\atomic
2521copying src\bond_geom.py -> build\lib\chimerax\atomic
2522copying src\changes.py -> build\lib\chimerax\atomic
2523copying src\colors.py -> build\lib\chimerax\atomic
2524copying src\contextmenu.py -> build\lib\chimerax\atomic
2525copying src\ctypes_support.py -> build\lib\chimerax\atomic
2526copying src\idatm.py -> build\lib\chimerax\atomic
2527copying src\molarray.py -> build\lib\chimerax\atomic
2528copying src\molc.py -> build\lib\chimerax\atomic
2529copying src\molobject.py -> build\lib\chimerax\atomic
2530copying src\molsurf.py -> build\lib\chimerax\atomic
2531copying src\path.py -> build\lib\chimerax\atomic
2532copying src\pbgroup.py -> build\lib\chimerax\atomic
2533copying src\pdbmatrices.py -> build\lib\chimerax\atomic
2534copying src\presets.py -> build\lib\chimerax\atomic
2535copying src\ribbon.py -> build\lib\chimerax\atomic
2536copying src\selectors.py -> build\lib\chimerax\atomic
2537copying src\settings.py -> build\lib\chimerax\atomic
2538copying src\shapedrawing.py -> build\lib\chimerax\atomic
2539copying src\sse.py -> build\lib\chimerax\atomic
2540copying src\structure.py -> build\lib\chimerax\atomic
2541copying src\struct_edit.py -> build\lib\chimerax\atomic
2542copying src\triggers.py -> build\lib\chimerax\atomic
2543copying src\widgets.py -> build\lib\chimerax\atomic
2544copying src\__init__.py -> build\lib\chimerax\atomic
2545creating build\lib\chimerax\atomic\data
2546creating build\lib\chimerax\atomic\data\idatm
2547creating build\lib\chimerax\atomic\data\idatm\templates
2548copying src\data\idatm\templates\A.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2549copying src\data\idatm\templates\ACE.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2550copying src\data\idatm\templates\ALA.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2551copying src\data\idatm\templates\ARG.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2552copying src\data\idatm\templates\ASN.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2553copying src\data\idatm\templates\ASP.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2554copying src\data\idatm\templates\C.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2555copying src\data\idatm\templates\CYS.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2556copying src\data\idatm\templates\DA.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2557copying src\data\idatm\templates\DC.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2558copying src\data\idatm\templates\DG.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2559copying src\data\idatm\templates\DT.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2560copying src\data\idatm\templates\FORMAT -> build\lib\chimerax\atomic\data\idatm\templates
2561copying src\data\idatm\templates\G.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2562copying src\data\idatm\templates\GLN.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2563copying src\data\idatm\templates\GLU.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2564copying src\data\idatm\templates\GLY.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2565copying src\data\idatm\templates\HID.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2566copying src\data\idatm\templates\HIE.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2567copying src\data\idatm\templates\HIP.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2568copying src\data\idatm\templates\HIS.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2569copying src\data\idatm\templates\HOH.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2570copying src\data\idatm\templates\HYP.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2571copying src\data\idatm\templates\ILE.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2572copying src\data\idatm\templates\LEU.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2573copying src\data\idatm\templates\LYS.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2574copying src\data\idatm\templates\MET.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2575copying src\data\idatm\templates\MSE.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2576copying src\data\idatm\templates\PHE.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2577copying src\data\idatm\templates\PRO.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2578copying src\data\idatm\templates\SER.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2579copying src\data\idatm\templates\T.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2580copying src\data\idatm\templates\THR.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2581copying src\data\idatm\templates\TRP.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2582copying src\data\idatm\templates\TYR.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2583copying src\data\idatm\templates\U.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2584copying src\data\idatm\templates\VAL.idatmres -> build\lib\chimerax\atomic\data\idatm\templates
2585creating build\lib\chimerax\atomic\include
2586creating build\lib\chimerax\atomic\include\atomic
2587copying src\include\atomic\ctypes_pyinst.h -> build\lib\chimerax\atomic\include\atomic
2588creating build\lib\chimerax\atomic\include\atomstruct
2589copying src\include\atomstruct\Atom.h -> build\lib\chimerax\atomic\include\atomstruct
2590copying src\include\atomstruct\AtomicStructure.h -> build\lib\chimerax\atomic\include\atomstruct
2591copying src\include\atomstruct\backbone.h -> build\lib\chimerax\atomic\include\atomstruct
2592copying src\include\atomstruct\Bond.h -> build\lib\chimerax\atomic\include\atomstruct
2593copying src\include\atomstruct\Chain.h -> build\lib\chimerax\atomic\include\atomstruct
2594copying src\include\atomstruct\ChangeTracker.h -> build\lib\chimerax\atomic\include\atomstruct
2595copying src\include\atomstruct\Connection.h -> build\lib\chimerax\atomic\include\atomstruct
2596copying src\include\atomstruct\Coord.h -> build\lib\chimerax\atomic\include\atomstruct
2597copying src\include\atomstruct\CoordSet.h -> build\lib\chimerax\atomic\include\atomstruct
2598copying src\include\atomstruct\destruct.h -> build\lib\chimerax\atomic\include\atomstruct
2599copying src\include\atomstruct\imex.h -> build\lib\chimerax\atomic\include\atomstruct
2600copying src\include\atomstruct\MolResId.h -> build\lib\chimerax\atomic\include\atomstruct
2601copying src\include\atomstruct\PBGroup.h -> build\lib\chimerax\atomic\include\atomstruct
2602copying src\include\atomstruct\PBManager.h -> build\lib\chimerax\atomic\include\atomstruct
2603copying src\include\atomstruct\Point.h -> build\lib\chimerax\atomic\include\atomstruct
2604copying src\include\atomstruct\polymer.h -> build\lib\chimerax\atomic\include\atomstruct
2605copying src\include\atomstruct\Pseudobond.h -> build\lib\chimerax\atomic\include\atomstruct
2606copying src\include\atomstruct\Real.h -> build\lib\chimerax\atomic\include\atomstruct
2607copying src\include\atomstruct\Residue.h -> build\lib\chimerax\atomic\include\atomstruct
2608copying src\include\atomstruct\Rgba.h -> build\lib\chimerax\atomic\include\atomstruct
2609copying src\include\atomstruct\RibbonXSection.h -> build\lib\chimerax\atomic\include\atomstruct
2610copying src\include\atomstruct\Ring.h -> build\lib\chimerax\atomic\include\atomstruct
2611copying src\include\atomstruct\Sequence.h -> build\lib\chimerax\atomic\include\atomstruct
2612copying src\include\atomstruct\seq_assoc.h -> build\lib\chimerax\atomic\include\atomstruct
2613copying src\include\atomstruct\session.h -> build\lib\chimerax\atomic\include\atomstruct
2614copying src\include\atomstruct\string_types.h -> build\lib\chimerax\atomic\include\atomstruct
2615copying src\include\atomstruct\Structure.h -> build\lib\chimerax\atomic\include\atomstruct
2616copying src\include\atomstruct\StructureSeq.h -> build\lib\chimerax\atomic\include\atomstruct
2617creating build\lib\chimerax\atomic\include\element
2618copying src\include\element\Element.h -> build\lib\chimerax\atomic\include\element
2619copying src\include\element\imex.h -> build\lib\chimerax\atomic\include\element
2620creating build\lib\chimerax\atomic\include\pyinstance
2621copying src\include\pyinstance\imex.h -> build\lib\chimerax\atomic\include\pyinstance
2622copying src\include\pyinstance\imex.map.h -> build\lib\chimerax\atomic\include\pyinstance
2623copying src\include\pyinstance\PythonInstance.declare.h -> build\lib\chimerax\atomic\include\pyinstance
2624copying src\include\pyinstance\PythonInstance.instantiate.h -> build\lib\chimerax\atomic\include\pyinstance
2625creating build\lib\chimerax\atomic\include\atomstruct\tmpl
2626copying src\include\atomstruct\tmpl\Atom.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl
2627copying src\include\atomstruct\tmpl\Bond.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl
2628copying src\include\atomstruct\tmpl\Coord.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl
2629copying src\include\atomstruct\tmpl\CoordSet.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl
2630copying src\include\atomstruct\tmpl\Molecule.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl
2631copying src\include\atomstruct\tmpl\resDescrip.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl
2632copying src\include\atomstruct\tmpl\Residue.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl
2633copying src\include\atomstruct\tmpl\residues.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl
2634copying src\include\atomstruct\tmpl\resinternal.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl
2635copying src\include\atomstruct\tmpl\restmpl.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl
2636copying src\include\atomstruct\tmpl\TAexcept.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl
2637copying src\include\atomstruct\tmpl\TemplateCache.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl
2638creating build\lib\chimerax\atomic\lib
2639copying src\lib\libatomstruct.dll -> build\lib\chimerax\atomic\lib
2640copying src\lib\libatomstruct.lib -> build\lib\chimerax\atomic\lib
2641copying src\lib\libelement.dll -> build\lib\chimerax\atomic\lib
2642copying src\lib\libelement.lib -> build\lib\chimerax\atomic\lib
2643copying src\lib\libpyinstance.dll -> build\lib\chimerax\atomic\lib
2644copying src\lib\libpyinstance.lib -> build\lib\chimerax\atomic\lib
2645copying src\cymol.pyd -> build\lib\chimerax\atomic
2646copying src\cymol.pyx -> build\lib\chimerax\atomic
2647copying src\cytmpl.pyd -> build\lib\chimerax\atomic
2648copying src\cytmpl.pyx -> build\lib\chimerax\atomic
2649copying src\libmolc.dll -> build\lib\chimerax\atomic
2650running build_ext
2651running bdist_wheel
2652installing to build\bdist.win-amd64\wheel
2653running install
2654running install_lib
2655running build_ext
2656creating build\bdist.win-amd64
2657creating build\bdist.win-amd64\wheel
2658creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data
2659creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib
2660creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax
2661creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2662copying build\lib\chimerax\atomic\args.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2663copying build\lib\chimerax\atomic\attr_registration.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2664copying build\lib\chimerax\atomic\bond_geom.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2665copying build\lib\chimerax\atomic\changes.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2666copying build\lib\chimerax\atomic\colors.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2667copying build\lib\chimerax\atomic\contextmenu.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2668copying build\lib\chimerax\atomic\ctypes_support.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2669copying build\lib\chimerax\atomic\cymol.pyd -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2670copying build\lib\chimerax\atomic\cymol.pyx -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2671copying build\lib\chimerax\atomic\cytmpl.pyd -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2672copying build\lib\chimerax\atomic\cytmpl.pyx -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2673creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data
2674creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm
2675creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2676copying build\lib\chimerax\atomic\data\idatm\templates\A.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2677copying build\lib\chimerax\atomic\data\idatm\templates\ACE.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2678copying build\lib\chimerax\atomic\data\idatm\templates\ALA.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2679copying build\lib\chimerax\atomic\data\idatm\templates\ARG.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2680copying build\lib\chimerax\atomic\data\idatm\templates\ASN.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2681copying build\lib\chimerax\atomic\data\idatm\templates\ASP.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2682copying build\lib\chimerax\atomic\data\idatm\templates\C.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2683copying build\lib\chimerax\atomic\data\idatm\templates\CYS.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2684copying build\lib\chimerax\atomic\data\idatm\templates\DA.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2685copying build\lib\chimerax\atomic\data\idatm\templates\DC.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2686copying build\lib\chimerax\atomic\data\idatm\templates\DG.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2687copying build\lib\chimerax\atomic\data\idatm\templates\DT.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2688copying build\lib\chimerax\atomic\data\idatm\templates\FORMAT -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2689copying build\lib\chimerax\atomic\data\idatm\templates\G.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2690copying build\lib\chimerax\atomic\data\idatm\templates\GLN.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2691copying build\lib\chimerax\atomic\data\idatm\templates\GLU.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2692copying build\lib\chimerax\atomic\data\idatm\templates\GLY.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2693copying build\lib\chimerax\atomic\data\idatm\templates\HID.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2694copying build\lib\chimerax\atomic\data\idatm\templates\HIE.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2695copying build\lib\chimerax\atomic\data\idatm\templates\HIP.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2696copying build\lib\chimerax\atomic\data\idatm\templates\HIS.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2697copying build\lib\chimerax\atomic\data\idatm\templates\HOH.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2698copying build\lib\chimerax\atomic\data\idatm\templates\HYP.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2699copying build\lib\chimerax\atomic\data\idatm\templates\ILE.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2700copying build\lib\chimerax\atomic\data\idatm\templates\LEU.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2701copying build\lib\chimerax\atomic\data\idatm\templates\LYS.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2702copying build\lib\chimerax\atomic\data\idatm\templates\MET.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2703copying build\lib\chimerax\atomic\data\idatm\templates\MSE.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2704copying build\lib\chimerax\atomic\data\idatm\templates\PHE.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2705copying build\lib\chimerax\atomic\data\idatm\templates\PRO.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2706copying build\lib\chimerax\atomic\data\idatm\templates\SER.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2707copying build\lib\chimerax\atomic\data\idatm\templates\T.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2708copying build\lib\chimerax\atomic\data\idatm\templates\THR.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2709copying build\lib\chimerax\atomic\data\idatm\templates\TRP.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2710copying build\lib\chimerax\atomic\data\idatm\templates\TYR.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2711copying build\lib\chimerax\atomic\data\idatm\templates\U.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2712copying build\lib\chimerax\atomic\data\idatm\templates\VAL.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates
2713copying build\lib\chimerax\atomic\idatm.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2714creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include
2715creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomic
2716copying build\lib\chimerax\atomic\include\atomic\ctypes_pyinst.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomic
2717creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2718copying build\lib\chimerax\atomic\include\atomstruct\Atom.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2719copying build\lib\chimerax\atomic\include\atomstruct\AtomicStructure.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2720copying build\lib\chimerax\atomic\include\atomstruct\backbone.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2721copying build\lib\chimerax\atomic\include\atomstruct\Bond.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2722copying build\lib\chimerax\atomic\include\atomstruct\Chain.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2723copying build\lib\chimerax\atomic\include\atomstruct\ChangeTracker.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2724copying build\lib\chimerax\atomic\include\atomstruct\Connection.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2725copying build\lib\chimerax\atomic\include\atomstruct\Coord.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2726copying build\lib\chimerax\atomic\include\atomstruct\CoordSet.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2727copying build\lib\chimerax\atomic\include\atomstruct\destruct.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2728copying build\lib\chimerax\atomic\include\atomstruct\imex.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2729copying build\lib\chimerax\atomic\include\atomstruct\MolResId.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2730copying build\lib\chimerax\atomic\include\atomstruct\PBGroup.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2731copying build\lib\chimerax\atomic\include\atomstruct\PBManager.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2732copying build\lib\chimerax\atomic\include\atomstruct\Point.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2733copying build\lib\chimerax\atomic\include\atomstruct\polymer.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2734copying build\lib\chimerax\atomic\include\atomstruct\Pseudobond.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2735copying build\lib\chimerax\atomic\include\atomstruct\Real.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2736copying build\lib\chimerax\atomic\include\atomstruct\Residue.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2737copying build\lib\chimerax\atomic\include\atomstruct\Rgba.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2738copying build\lib\chimerax\atomic\include\atomstruct\RibbonXSection.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2739copying build\lib\chimerax\atomic\include\atomstruct\Ring.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2740copying build\lib\chimerax\atomic\include\atomstruct\Sequence.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2741copying build\lib\chimerax\atomic\include\atomstruct\seq_assoc.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2742copying build\lib\chimerax\atomic\include\atomstruct\session.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2743copying build\lib\chimerax\atomic\include\atomstruct\string_types.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2744copying build\lib\chimerax\atomic\include\atomstruct\Structure.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2745copying build\lib\chimerax\atomic\include\atomstruct\StructureSeq.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct
2746creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl
2747copying build\lib\chimerax\atomic\include\atomstruct\tmpl\Atom.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl
2748copying build\lib\chimerax\atomic\include\atomstruct\tmpl\Bond.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl
2749copying build\lib\chimerax\atomic\include\atomstruct\tmpl\Coord.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl
2750copying build\lib\chimerax\atomic\include\atomstruct\tmpl\CoordSet.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl
2751copying build\lib\chimerax\atomic\include\atomstruct\tmpl\Molecule.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl
2752copying build\lib\chimerax\atomic\include\atomstruct\tmpl\resDescrip.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl
2753copying build\lib\chimerax\atomic\include\atomstruct\tmpl\Residue.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl
2754copying build\lib\chimerax\atomic\include\atomstruct\tmpl\residues.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl
2755copying build\lib\chimerax\atomic\include\atomstruct\tmpl\resinternal.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl
2756copying build\lib\chimerax\atomic\include\atomstruct\tmpl\restmpl.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl
2757copying build\lib\chimerax\atomic\include\atomstruct\tmpl\TAexcept.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl
2758copying build\lib\chimerax\atomic\include\atomstruct\tmpl\TemplateCache.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl
2759creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\element
2760copying build\lib\chimerax\atomic\include\element\Element.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\element
2761copying build\lib\chimerax\atomic\include\element\imex.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\element
2762creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\pyinstance
2763copying build\lib\chimerax\atomic\include\pyinstance\imex.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\pyinstance
2764copying build\lib\chimerax\atomic\include\pyinstance\imex.map.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\pyinstance
2765copying build\lib\chimerax\atomic\include\pyinstance\PythonInstance.declare.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\pyinstance
2766copying build\lib\chimerax\atomic\include\pyinstance\PythonInstance.instantiate.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\pyinstance
2767creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\lib
2768copying build\lib\chimerax\atomic\lib\libatomstruct.dll -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\lib
2769copying build\lib\chimerax\atomic\lib\libatomstruct.lib -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\lib
2770copying build\lib\chimerax\atomic\lib\libelement.dll -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\lib
2771copying build\lib\chimerax\atomic\lib\libelement.lib -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\lib
2772copying build\lib\chimerax\atomic\lib\libpyinstance.dll -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\lib
2773copying build\lib\chimerax\atomic\lib\libpyinstance.lib -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\lib
2774copying build\lib\chimerax\atomic\libmolc.dll -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2775copying build\lib\chimerax\atomic\molarray.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2776copying build\lib\chimerax\atomic\molc.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2777copying build\lib\chimerax\atomic\molobject.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2778copying build\lib\chimerax\atomic\molsurf.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2779copying build\lib\chimerax\atomic\path.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2780copying build\lib\chimerax\atomic\pbgroup.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2781copying build\lib\chimerax\atomic\pdbmatrices.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2782copying build\lib\chimerax\atomic\presets.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2783copying build\lib\chimerax\atomic\ribbon.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2784copying build\lib\chimerax\atomic\selectors.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2785copying build\lib\chimerax\atomic\settings.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2786copying build\lib\chimerax\atomic\shapedrawing.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2787copying build\lib\chimerax\atomic\sse.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2788copying build\lib\chimerax\atomic\structure.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2789copying build\lib\chimerax\atomic\struct_edit.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2790copying build\lib\chimerax\atomic\triggers.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2791copying build\lib\chimerax\atomic\widgets.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2792copying build\lib\chimerax\atomic\__init__.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic
2793running install_egg_info
2794running egg_info
2795creating ChimeraX_Atomic.egg-info
2796writing ChimeraX_Atomic.egg-info\PKG-INFO
2797writing dependency_links to ChimeraX_Atomic.egg-info\dependency_links.txt
2798writing requirements to ChimeraX_Atomic.egg-info\requires.txt
2799writing top-level names to ChimeraX_Atomic.egg-info\top_level.txt
2800writing manifest file 'ChimeraX_Atomic.egg-info\SOURCES.txt'
2801reading manifest file 'ChimeraX_Atomic.egg-info\SOURCES.txt'
2802writing manifest file 'ChimeraX_Atomic.egg-info\SOURCES.txt'
2803Copying ChimeraX_Atomic.egg-info to build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\ChimeraX_Atomic-1.0-py3.7.egg-info
2804running install_scripts
2805creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.dist-info\WHEEL
2806creating 'dist\ChimeraX_Atomic-1.0-cp37-cp37m-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it
2807adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/__init__.py'
2808adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/args.py'
2809adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/attr_registration.py'
2810adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/bond_geom.py'
2811adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/changes.py'
2812adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/colors.py'
2813adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/contextmenu.py'
2814adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/ctypes_support.py'
2815adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/cymol.pyd'
2816adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/cymol.pyx'
2817adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/cytmpl.pyd'
2818adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/cytmpl.pyx'
2819adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/idatm.py'
2820adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/libmolc.dll'
2821adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/molarray.py'
2822adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/molc.py'
2823adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/molobject.py'
2824adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/molsurf.py'
2825adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/path.py'
2826adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/pbgroup.py'
2827adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/pdbmatrices.py'
2828adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/presets.py'
2829adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/ribbon.py'
2830adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/selectors.py'
2831adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/settings.py'
2832adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/shapedrawing.py'
2833adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/sse.py'
2834adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/struct_edit.py'
2835adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/structure.py'
2836adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/triggers.py'
2837adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/widgets.py'
2838adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/A.idatmres'
2839adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/ACE.idatmres'
2840adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/ALA.idatmres'
2841adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/ARG.idatmres'
2842adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/ASN.idatmres'
2843adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/ASP.idatmres'
2844adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/C.idatmres'
2845adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/CYS.idatmres'
2846adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/DA.idatmres'
2847adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/DC.idatmres'
2848adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/DG.idatmres'
2849adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/DT.idatmres'
2850adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/FORMAT'
2851adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/G.idatmres'
2852adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/GLN.idatmres'
2853adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/GLU.idatmres'
2854adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/GLY.idatmres'
2855adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/HID.idatmres'
2856adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/HIE.idatmres'
2857adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/HIP.idatmres'
2858adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/HIS.idatmres'
2859adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/HOH.idatmres'
2860adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/HYP.idatmres'
2861adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/ILE.idatmres'
2862adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/LEU.idatmres'
2863adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/LYS.idatmres'
2864adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/MET.idatmres'
2865adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/MSE.idatmres'
2866adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/PHE.idatmres'
2867adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/PRO.idatmres'
2868adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/SER.idatmres'
2869adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/T.idatmres'
2870adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/THR.idatmres'
2871adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/TRP.idatmres'
2872adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/TYR.idatmres'
2873adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/U.idatmres'
2874adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/VAL.idatmres'
2875adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomic/ctypes_pyinst.h'
2876adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Atom.h'
2877adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/AtomicStructure.h'
2878adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Bond.h'
2879adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Chain.h'
2880adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/ChangeTracker.h'
2881adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Connection.h'
2882adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Coord.h'
2883adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/CoordSet.h'
2884adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/MolResId.h'
2885adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/PBGroup.h'
2886adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/PBManager.h'
2887adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Point.h'
2888adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Pseudobond.h'
2889adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Real.h'
2890adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Residue.h'
2891adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Rgba.h'
2892adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/RibbonXSection.h'
2893adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Ring.h'
2894adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Sequence.h'
2895adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Structure.h'
2896adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/StructureSeq.h'
2897adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/backbone.h'
2898adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/destruct.h'
2899adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/imex.h'
2900adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/polymer.h'
2901adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/seq_assoc.h'
2902adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/session.h'
2903adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/string_types.h'
2904adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/Atom.h'
2905adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/Bond.h'
2906adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/Coord.h'
2907adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/CoordSet.h'
2908adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/Molecule.h'
2909adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/Residue.h'
2910adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/TAexcept.h'
2911adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/TemplateCache.h'
2912adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/resDescrip.h'
2913adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/residues.h'
2914adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/resinternal.h'
2915adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/restmpl.h'
2916adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/element/Element.h'
2917adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/element/imex.h'
2918adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/pyinstance/PythonInstance.declare.h'
2919adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/pyinstance/PythonInstance.instantiate.h'
2920adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/pyinstance/imex.h'
2921adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/pyinstance/imex.map.h'
2922adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/lib/libatomstruct.dll'
2923adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/lib/libatomstruct.lib'
2924adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/lib/libelement.dll'
2925adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/lib/libelement.lib'
2926adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/lib/libpyinstance.dll'
2927adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/lib/libpyinstance.lib'
2928adding 'ChimeraX_Atomic-1.0.dist-info/METADATA'
2929adding 'ChimeraX_Atomic-1.0.dist-info/WHEEL'
2930adding 'ChimeraX_Atomic-1.0.dist-info/top_level.txt'
2931adding 'ChimeraX_Atomic-1.0.dist-info/RECORD'
2932removing build\bdist.win-amd64\wheel
2933Distribution is in .\dist\ChimeraX_Atomic-1.0-cp37-cp37m-win_amd64.whl
2934INFO:
2935Executing: toolshed install ".\\dist\\ChimeraX_Atomic-1.0-cp37-cp37m-win_amd64.whl" userOnly false
2936Successfully installed ChimeraX-Atomic-1.0
2937Installed ChimeraX-Atomic (1.0)
2938
29390.00% done: Initializing core
294050.00% done: Initializing bundles
2941$