ChimeraX Log

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warning	'clip' is a prefix of an existing command 'clipper'

UCSF ChimeraX version: 0.91 (2019-07-07)
© 2016-2019 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX

open "C:\\Users\\khan\\Desktop\\IUCrJ_Revision\\IUCrJ\\1st Revision\\Figures\\Supporting Information\\emd_6716.map"

open "C:\\Users\\khan\\Desktop\\IUCrJ_Revision\\IUCrJ\\1st Revision\\Figures\\Supporting Information\\emd_6716.map"

Opened emd_6716.map, grid size 60,60,60, pixel 4.8, shown at level 1.77, step 1, values float32

set bgColor white

set bgColor white

save image "C:/Users/khan/Desktop/IUCrJ_Revision/IUCrJ/1st Revision/Figures/Supporting Information/Suzuki_etal04.bmp" width 488 height 516

save image "C:/Users/khan/Desktop/IUCrJ_Revision/IUCrJ/1st Revision/Figures/Supporting Information/Suzuki_etal04.bmp" width 488 height 516

save "C:/Users/khan/Desktop/IUCrJ_Revision/IUCrJ/1st Revision/Figures/Supporting Information/Suzuki_etal04.mrc" models #1

save "C:/Users/khan/Desktop/IUCrJ_Revision/IUCrJ/1st Revision/Figures/Supporting Information/Suzuki_etal04.mrc" models #1

open "C:/Users/khan/Desktop/IUCrJ_Revision/IUCrJ/1st Revision/Figures/Supporting Information/EMD-1887.map"

open "C:/Users/khan/Desktop/IUCrJ_Revision/IUCrJ/1st Revision/Figures/Supporting Information/EMD-1887.map"

Opened EMD-1887.map, grid size 180,180,120, pixel 2.8, shown at level 320, step 1, values float32

ui mousemode rightMode select

ui mousemode rightMode select

2 models selected

set bgColor black

set bgColor black

ui mousemode rightMode "rotate selected models"

ui mousemode rightMode "rotate selected models"

ui mousemode rightMode "translate selected models"

ui mousemode rightMode "translate selected models"

ui mousemode rightMode rotate

ui mousemode rightMode rotate

ui mousemode rightMode "translate selected models"

ui mousemode rightMode "translate selected models"

ui mousemode rightMode rotate

ui mousemode rightMode rotate

ui mousemode rightMode "rotate selected models"

ui mousemode rightMode "rotate selected models"

ui mousemode rightMode "translate selected models"

ui mousemode rightMode "translate selected models"

ui mousemode rightMode "rotate selected models"

ui mousemode rightMode "rotate selected models"

ui mousemode rightMode rotate

ui mousemode rightMode rotate

ui mousemode rightMode "translate selected models"

ui mousemode rightMode "translate selected models"

ui mousemode rightMode rotate

ui mousemode rightMode rotate

ui mousemode rightMode "translate selected models"

ui mousemode rightMode "translate selected models"

ui mousemode rightMode rotate

ui mousemode rightMode rotate

ui mousemode rightMode "translate selected models"

ui mousemode rightMode "translate selected models"

ui mousemode rightMode rotate

ui mousemode rightMode rotate

ui mousemode rightMode "translate selected models"

ui mousemode rightMode "translate selected models"

ui mousemode rightMode rotate

ui mousemode rightMode rotate

set bgColor white

set bgColor white

ui mousemode rightMode select

ui mousemode rightMode select

Traceback (most recent call last):
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py", line 855, in <lambda>
    save_action.triggered.connect(lambda arg, s=self, sess=session: s.file_save_cb(sess))
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py", line 595, in file_save_cb
    self.save_dialog.display(self, session)
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\save_dialog.py", line 114, in display
    fmt.update(session, self)
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\savemap.py", line 67, in update
    self._map_menu.value = m
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\widgets\item_chooser.py", line 269, in value
    or (val is not None and self.value == val):
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\widgets\item_chooser.py", line 246, in value
    self._sleep_check()
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\widgets\item_chooser.py", line 81, in _sleep_check
    self._items_change()
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\widgets\item_chooser.py", line 287, in _items_change
    prev_value = self.value
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\widgets\item_chooser.py", line 255, in value
    return self.item_map[text]
KeyError: 'emd_6716.map #1'

KeyError: 'emd_6716.map #1'

File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\widgets\item_chooser.py", line 255, in value
return self.item_map[text]

See log for complete Python traceback.

show #!1 models

show #!1 models

hide #!1 models

hide #!1 models

show #!1 models

show #!1 models

hide #!1 models

hide #!1 models

show #!1 models

show #!1 models

hide #!1 models

hide #!1 models

show #!1 models

show #!1 models

hide #!1 models

hide #!1 models

show #!1 models

show #!1 models

hide #!1 models

hide #!1 models

show #!1 models

show #!1 models

hide #!1 models

hide #!1 models

show #!1 models

show #!1 models

hide #!1 models

hide #!1 models

show #!1 models

show #!1 models

hide #!1 models

hide #!1 models

show #!1 models

show #!1 models

hide #!1 models

hide #!1 models

show #!1 models

show #!1 models

hide #!1 models

hide #!1 models

show #!1 models

show #!1 models

Traceback (most recent call last):
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py", line 855, in <lambda>
    save_action.triggered.connect(lambda arg, s=self, sess=session: s.file_save_cb(sess))
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py", line 595, in file_save_cb
    self.save_dialog.display(self, session)
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\save_dialog.py", line 114, in display
    fmt.update(session, self)
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\savemap.py", line 67, in update
    self._map_menu.value = m
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\widgets\item_chooser.py", line 269, in value
    or (val is not None and self.value == val):
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\widgets\item_chooser.py", line 255, in value
    return self.item_map[text]
KeyError: 'emd_6716.map #1'

KeyError: 'emd_6716.map #1'

File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\widgets\item_chooser.py", line 255, in value
return self.item_map[text]

See log for complete Python traceback.