Opened 6 years ago

Closed 6 years ago

#2637 closed defect (duplicate)

Surface capping: Array argument has non-numeric values

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Surface Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Darwin-18.7.0-x86_64-i386-64bit
ChimeraX Version: 0.91 (2019-07-30)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 0.91 (2019-07-30)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "/Users/jardetz/Desktop/Papers/HCMV
trimer/structures/J79_map_invert.mrc"

File not found: /Users/jardetz/Desktop/Papers/HCMV
trimer/structures/J79_map_invert.mrc  

> open "/Users/jardetz/Desktop/Papers/HCMV
trimer/structures/J79_map_invert.mrc"

File not found: /Users/jardetz/Desktop/Papers/HCMV
trimer/structures/J79_map_invert.mrc  

> open "/Users/jardetz/Desktop/Papers/HCMV trimer
Structure/structures/J79_map_invert.mrc"

Opened J79_map_invert.mrc, grid size 288,288,288, pixel 1.06, shown at level
0.294, step 2, values float32  

> open "/Users/jardetz/Desktop/Papers/HCMV trimer
Structure/structures/gHgL_PDGFRamodel_fitJ79_chains.pdb"

Summary of feedback from opening /Users/jardetz/Desktop/Papers/HCMV trimer
Structure/structures/gHgL_PDGFRamodel_fitJ79_chains.pdb  
---  
warnings | Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
6096 messages similar to the above omitted  
  
Chain information for gHgL_PDGFRamodel_fitJ79_chains.pdb #2  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  

> set bgColor white

> select clear

> view #2 clip false

> style selAtoms stick

Changed 17 atom styles  

> style selAtoms stick

Changed 17 atom styles  

> style selAtoms stick

Changed 17 atom styles  

> style selAtoms stick

Changed 17 atom styles  

> style selAtoms stick

Changed 17 atom styles  

> show selAtoms

> hide selAtoms ribbons

> hide selAtoms ribbons

> hide selAtoms ribbons

> show selAtoms

> select

20493 atoms, 20726 bonds, 2 pseudobonds, 4 models selected  

> hide selAtoms ribbons

> style selAtoms stick

Changed 20493 atom styles  

> show selAtoms

> nucleotides selAtoms atoms

> style nucleic & selAtoms stick

Changed 0 atom styles  

> nucleotides selAtoms fill

> style nucleic & selAtoms stick

Changed 0 atom styles  

> style selAtoms stick

Changed 20493 atom styles  

> style selAtoms stick

Changed 20493 atom styles  

> color selAtoms bychain

> ~hbonds

> rainbow selAtoms

> hide selAtoms

> nucleotides selAtoms atoms

> style nucleic & selAtoms stick

Changed 0 atom styles  

> show selAtoms ribbons

> hide selAtoms ribbons

> show selAtoms ribbons

> toolshed show "Side View"

Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 61, in draw_new_frame  
surface.update_clip_caps(view)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps  
subdivision = settings.clipping_cap_subdivision)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
TypeError: Array argument has non-numeric values  
  
TypeError: Array argument has non-numeric values  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps  
varray, tarray = refine_mesh(varray, tarray, subdivision)  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 NVIDIA-12.0.24 355.11.10.50.10.103
OpenGL renderer: NVIDIA GeForce GT 650M OpenGL Engine
OpenGL vendor: NVIDIA Corporation

Change History (2)

comment:1 by Eric Pettersen, 6 years ago

Component: Unassigned → Surface
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Surface capping: Array argument has non-numeric values

comment:2 by Tom Goddard, 6 years ago

Resolution: → duplicate
Status: assigned → closed

Fixed 4 months ago. There was only 1 day's daily build that had this bug.

Duplicate of #2277.

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