$ make install make -C atomic_cpp make[1]: Entering directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp' mkdir lib mkdir include mkdir include/atomic cp ctypes_pyinst.h include/atomic mkdir data make install make[2]: Entering directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp' make -C pyinstance_cpp install make[3]: Entering directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/pyinstance_cpp' sed -e 's/LIBNAME/PYINSTANCE/' < /home/goddard/chimerax/build/include/imex.i > imex.h sed -e 's/PYINSTANCE/PYINSTANCE_MAP/' < imex.h > imex.map.h cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' /c PythonInstance.cpp PythonInstance.cpp cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 /LD /Felibpyinstance.dll PythonInstance.obj /link /LIBPATH:'C:/cygwin64/home/goddard/chimerax/build/lib' python37.lib; if [ -e libpyinstance.dll.manifest ]; then mt -nologo -manifest libpyinstance.dll.manifest -outputresource:libpyinstance.dll\;2 ; fi Creating library libpyinstance.lib and object libpyinstance.exp /home/goddard/chimerax/build/bin/rsync.convert -rlptWv libpyinstance.dll ../lib sending incremental file list libpyinstance.dll sent 15,460 bytes received 35 bytes 30,990.00 bytes/sec total size is 15,360 speedup is 0.99 /home/goddard/chimerax/build/bin/rsync.convert -rlptWv libpyinstance.lib ../lib sending incremental file list libpyinstance.lib sent 3,256 bytes received 35 bytes 6,582.00 bytes/sec total size is 3,156 speedup is 0.96 /home/goddard/chimerax/build/bin/rsync.convert -rlptWv imex.h imex.map.h PythonInstance.instantiate.h PythonInstance.declare.h ../include/pyinstance/ sending incremental file list created directory ../include/pyinstance PythonInstance.declare.h PythonInstance.instantiate.h imex.h imex.map.h sent 12,079 bytes received 136 bytes 24,430.00 bytes/sec total size is 11,772 speedup is 0.96 make[3]: Leaving directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/pyinstance_cpp' make -C element_cpp install make[3]: Entering directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/element_cpp' sed -e 's/LIBNAME/ELEMENT/' < /home/goddard/chimerax/build/include/imex.i > imex.h cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' /c Element.cpp Element.cpp cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 /LD /Felibelement.dll Element.obj /link /LIBPATH:'C:/cygwin64/home/goddard/chimerax/build/lib' python37.lib /LIBPATH:../lib libpyinstance.lib python37.lib; if [ -e libelement.dll.manifest ]; then mt -nologo -manifest libelement.dll.manifest -outputresource:libelement.dll\;2 ; fi Creating library libelement.lib and object libelement.exp /home/goddard/chimerax/build/bin/rsync.convert -rlptWv libelement.dll ../lib sending incremental file list libelement.dll sent 73,326 bytes received 35 bytes 146,722.00 bytes/sec total size is 73,216 speedup is 1.00 /home/goddard/chimerax/build/bin/rsync.convert -rlptWv libelement.lib ../lib sending incremental file list libelement.lib sent 28,680 bytes received 35 bytes 57,430.00 bytes/sec total size is 28,582 speedup is 1.00 /home/goddard/chimerax/build/bin/rsync.convert -rlptWv imex.h Element.h ../include/element/ sending incremental file list created directory ../include/element Element.h imex.h sent 4,653 bytes received 95 bytes 9,496.00 bytes/sec total size is 4,492 speedup is 0.95 make[3]: Leaving directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/element_cpp' make -C atomstruct_cpp install make[3]: Entering directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/atomstruct_cpp' sed -e 's/LIBNAME/ATOMSTRUCT/' < /home/goddard/chimerax/build/include/imex.i > imex.h cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c Chain.cpp Chain.cpp cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c CompSS.cpp CompSS.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c Bond.cpp Bond.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\PBGroup.h(66): warning C4305: 'initializing': truncation from 'double' to 'float' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c Structure.cpp Structure.cpp C:/cygwin64/home/goddard/chimerax/build/include\pysupport/convert.h(252): warning C4244: 'return': conversion from 'double' to 'long', possible loss of data c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\PBGroup.h(66): warning C4305: 'initializing': truncation from 'double' to 'float' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c seq_assoc.cpp seq_assoc.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\seq_assoc.h(74): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'atomstruct::SA_AssocFailure' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\seq_assoc.h(74): note: see declaration of 'atomstruct::SA_AssocFailure' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c StructureSeq.cpp StructureSeq.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c Ring.cpp Ring.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float' Ring.cpp(220): warning C4311: 'reinterpret_cast': pointer truncation from 'atomstruct::Bond *' to 'long' Ring.cpp(220): warning C4302: 'reinterpret_cast': truncation from 'atomstruct::Bond *' to 'long' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c AtomTypes.cpp AtomTypes.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\PBGroup.h(66): warning C4305: 'initializing': truncation from 'double' to 'float' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl/TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl/TAexcept.h(25): note: see declaration of 'tmpl::TA_exception' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c PBManager.cpp PBManager.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\PBGroup.h(66): warning C4305: 'initializing': truncation from 'double' to 'float' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float' C:/cygwin64/home/goddard/chimerax/build/include\pysupport/convert.h(252): warning C4244: 'return': conversion from 'double' to 'long', possible loss of data cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c Atom.cpp Atom.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\PBGroup.h(66): warning C4305: 'initializing': truncation from 'double' to 'float' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception' C:/cygwin64/home/goddard/chimerax/build/include\pysupport/convert.h(252): warning C4244: 'return': conversion from 'double' to 'long', possible loss of data Atom.cpp(262): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(269): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(273): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(276): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(279): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(282): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(285): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(288): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(302): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(304): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(305): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(310): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(311): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(315): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(317): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(320): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(322): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(325): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(329): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(330): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(335): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(341): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(343): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(345): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(347): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(348): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(353): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(355): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(356): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(361): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(363): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(364): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(368): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(371): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(375): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(381): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(383): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(385): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(386): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(391): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(393): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(395): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(401): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(405): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(408): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(411): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(416): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(418): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(419): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(424): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(426): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(427): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(432): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(434): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(435): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(440): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(441): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(446): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(447): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(452): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(454): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(455): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(460): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(461): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(464): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(467): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(474): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(480): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(482): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(484): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(485): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(490): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(492): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(494): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(495): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(500): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(502): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(503): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(508): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(510): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(512): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(513): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(518): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(519): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(522): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(525): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(528): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(531): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(536): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(537): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(542): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(543): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(548): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(550): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(552): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(553): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(558): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(559): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(564): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(566): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(567): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(570): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(575): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(576): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(580): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(586): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(588): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(590): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(591): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(596): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(598): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(599): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(604): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(606): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(608): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(609): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(614): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(618): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(619): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(624): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(625): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(630): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(632): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(634): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(635): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(640): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(641): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(646): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(647): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(652): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(655): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(660): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(661): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(666): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(667): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(672): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(673): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(676): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(682): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(687): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(688): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(693): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(694): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(699): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(700): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(705): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(707): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(708): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(711): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(714): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(717): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(720): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(723): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(728): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(729): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(732): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(737): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(739): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(741): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(742): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(747): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(749): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(755): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(757): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(759): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(760): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(765): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(767): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(768): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(771): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(774): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(779): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(780): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(783): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(788): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(790): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(792): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(793): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(796): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(799): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(802): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(810): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(811): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(814): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(817): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(820): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(823): warning C4305: 'return': truncation from 'double' to 'float' Atom.cpp(829): warning C4305: 'return': truncation from 'double' to 'float' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c Residue.cpp Residue.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float' Residue.cpp(416): warning C4503: 'std::_Compressed_pair,std::_Compressed_pair>,std::_Tree_val>>,true>,true>::_Get_second': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Other=std::_Tree_node,void *>, _Ty=tmpl::TemplateCache::ResMap ] Residue.cpp(416): warning C4503: 'std::_Tree>::erase': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] Residue.cpp(416): warning C4503: 'std::_Tree_comp_alloc<_Traits>::_Myval': decorated name length exceeded, name was truncated with [ _Traits=std::_Tmap_traits,std::allocator>,false> ] Residue.cpp(416): warning C4503: 'std::_Tree>::_Tree': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] Residue.cpp(416): warning C4503: 'std::_Tree>::_Copy': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] Residue.cpp(416): warning C4503: 'std::_Tree_comp_alloc<_Traits>::_Tree_comp_alloc': decorated name length exceeded, name was truncated with [ _Traits=std::_Tmap_traits,std::allocator>,false> ] Residue.cpp(416): warning C4503: 'std::_Tree>::_Copy_nodes': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] Residue.cpp(416): warning C4503: 'std::allocator_traits<_Alloc>::destroy': decorated name length exceeded, name was truncated with [ _Alloc=std::allocator,void *>> ] Residue.cpp(416): warning C4503: 'std::allocator_traits<_Alloc>::construct': decorated name length exceeded, name was truncated with [ _Alloc=std::allocator,void *>> ] Residue.cpp(416): warning C4503: 'std::_Compressed_pair,std::_Compressed_pair>,std::_Tree_val>>,true>,true>::_Compressed_pair': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Other=std::_Tree_node,void *>, _Ty=tmpl::TemplateCache::ResMap ] Residue.cpp(416): warning C4503: 'std::_Tree>::_Copy_or_move': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] Residue.cpp(416): warning C4503: 'std::_Compressed_pair>,std::_Tree_val>>,true>::_Compressed_pair': decorated name length exceeded, name was truncated with [ _Other=std::_Tree_node,void *>, _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap ] Residue.cpp(416): warning C4503: 'std::_Tree_comp_alloc<_Traits>::_Buynode': decorated name length exceeded, name was truncated with [ _Traits=std::_Tmap_traits,std::allocator>,false> ] cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c AtomicStructure.cpp AtomicStructure.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\PBGroup.h(66): warning C4305: 'initializing': truncation from 'double' to 'float' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\seq_assoc.h(74): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'atomstruct::SA_AssocFailure' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\seq_assoc.h(74): note: see declaration of 'atomstruct::SA_AssocFailure' C:/cygwin64/home/goddard/chimerax/build/include\pysupport/convert.h(252): warning C4244: 'return': conversion from 'double' to 'long', possible loss of data cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c RingCalc.cpp RingCalc.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c RibbonXSection.cpp RibbonXSection.cpp RibbonXSection.cpp(88): warning C4003: not enough actual parameters for macro 'import_array1' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c MolResId.cpp MolResId.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c CoordSet.cpp CoordSet.cpp cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c ChangeTracker.cpp ChangeTracker.cpp cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c PBGroup.cpp PBGroup.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\PBGroup.h(66): warning C4305: 'initializing': truncation from 'double' to 'float' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c Sequence.cpp Sequence.cpp c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\utility(172): warning C4267: 'initializing': conversion from 'size_t' to 'int', possible loss of data c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xmemory0(737): note: see reference to function template instantiation 'std::pair::pair(_Other1 &&,_Other2 &&) noexcept' being compiled with [ _Ty=unsigned __int64, _Other1=unsigned __int64, _Other2=__int64 ] c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xmemory0(737): note: see reference to function template instantiation 'std::pair::pair(_Other1 &&,_Other2 &&) noexcept' being compiled with [ _Ty=unsigned __int64, _Other1=unsigned __int64, _Other2=__int64 ] c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xmemory0(857): note: see reference to function template instantiation 'void std::allocator<_Ty>::construct<_Objty,unsigned __int64,__int64>(_Objty *,unsigned __int64 &&,__int64 &&)' being compiled with [ _Ty=std::pair, _Objty=std::pair ] c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xmemory0(857): note: see reference to function template instantiation 'void std::allocator<_Ty>::construct<_Objty,unsigned __int64,__int64>(_Objty *,unsigned __int64 &&,__int64 &&)' being compiled with [ _Ty=std::pair, _Objty=std::pair ] c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xmemory0(996): note: see reference to function template instantiation 'void std::allocator_traits<_Alloc>::construct<_Ty,unsigned __int64,__int64>(std::allocator<_Ty> &,_Objty *,unsigned __int64 &&,__int64 &&)' being compiled with [ _Alloc=std::allocator>, _Ty=std::pair, _Objty=std::pair ] c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xmemory0(995): note: see reference to function template instantiation 'void std::allocator_traits<_Alloc>::construct<_Ty,unsigned __int64,__int64>(std::allocator<_Ty> &,_Objty *,unsigned __int64 &&,__int64 &&)' being compiled with [ _Alloc=std::allocator>, _Ty=std::pair, _Objty=std::pair ] c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\vector(930): note: see reference to function template instantiation 'void std::_Wrap_alloc>::construct<_Ty,unsigned __int64,__int64>(_Ty *,unsigned __int64 &&,__int64 &&)' being compiled with [ _Ty=std::pair ] c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\vector(929): note: see reference to function template instantiation 'void std::_Wrap_alloc>::construct<_Ty,unsigned __int64,__int64>(_Ty *,unsigned __int64 &&,__int64 &&)' being compiled with [ _Ty=std::pair ] Sequence.cpp(209): note: see reference to function template instantiation 'void std::vector,std::allocator<_Ty>>::emplace_back(unsigned __int64 &&,__int64 &&)' being compiled with [ _Ty=std::pair ] Sequence.cpp(209): note: see reference to function template instantiation 'void std::vector,std::allocator<_Ty>>::emplace_back(unsigned __int64 &&,__int64 &&)' being compiled with [ _Ty=std::pair ] c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\utility(172): warning C4244: 'initializing': conversion from '__int64' to 'int', possible loss of data cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c destruct.cpp destruct.cpp cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c Point.cpp Point.cpp cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I../include -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" /c Pseudobond.cpp Pseudobond.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\PBGroup.h(66): warning C4305: 'initializing': truncation from 'double' to 'float' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float' Pseudobond.cpp(32): warning C4305: '=': truncation from 'double' to 'float' make -C tmpl install make[4]: Entering directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/atomstruct_cpp/tmpl' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c findres.cpp findres.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c namino.cpp namino.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c Bond.cpp Bond.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c ions.cpp ions.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c amino.cpp amino.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c Molecule.cpp Molecule.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c Residue.cpp Residue.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception' Residue.cpp(169): warning C4503: 'std::_Compressed_pair,std::_Compressed_pair>,std::_Tree_val>>,true>,true>::_Get_second': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Other=std::_Tree_node,void *>, _Ty=tmpl::TemplateCache::ResMap ] Residue.cpp(169): warning C4503: 'std::_Tree>::erase': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] Residue.cpp(169): warning C4503: 'std::_Tree_comp_alloc<_Traits>::_Myval': decorated name length exceeded, name was truncated with [ _Traits=std::_Tmap_traits,std::allocator>,false> ] Residue.cpp(169): warning C4503: 'std::_Tree>::_Tree': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] Residue.cpp(169): warning C4503: 'std::_Tree>::_Copy': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] Residue.cpp(169): warning C4503: 'std::_Tree_comp_alloc<_Traits>::_Tree_comp_alloc': decorated name length exceeded, name was truncated with [ _Traits=std::_Tmap_traits,std::allocator>,false> ] Residue.cpp(169): warning C4503: 'std::_Tree>::_Copy_nodes': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] Residue.cpp(169): warning C4503: 'std::allocator_traits<_Alloc>::destroy': decorated name length exceeded, name was truncated with [ _Alloc=std::allocator,void *>> ] Residue.cpp(169): warning C4503: 'std::allocator_traits<_Alloc>::construct': decorated name length exceeded, name was truncated with [ _Alloc=std::allocator,void *>> ] Residue.cpp(169): warning C4503: 'std::_Compressed_pair,std::_Compressed_pair>,std::_Tree_val>>,true>,true>::_Compressed_pair': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Other=std::_Tree_node,void *>, _Ty=tmpl::TemplateCache::ResMap ] Residue.cpp(169): warning C4503: 'std::_Tree>::_Copy_or_move': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] Residue.cpp(169): warning C4503: 'std::_Compressed_pair>,std::_Tree_val>>,true>::_Compressed_pair': decorated name length exceeded, name was truncated with [ _Other=std::_Tree_node,void *>, _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap ] Residue.cpp(169): warning C4503: 'std::_Tree_comp_alloc<_Traits>::_Buynode': decorated name length exceeded, name was truncated with [ _Traits=std::_Tmap_traits,std::allocator>,false> ] cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c TemplateCache.cpp TemplateCache.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception' TemplateCache.cpp(243): warning C4503: 'std::_Tree>::find': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] TemplateCache.cpp(243): warning C4503: 'std::_Tree>::lower_bound': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] TemplateCache.cpp(243): warning C4503: 'std::_Compressed_pair,std::_Compressed_pair>,std::_Tree_val>>,true>,true>::_Get_second': decorated name length exceeded, name was truncated with [ _Kty=atomstruct::ResName, _Other=std::_Tree_node,void *>, _Ty=tmpl::TemplateCache::ResMap ] TemplateCache.cpp(243): warning C4503: 'std::_Tree_comp_alloc<_Traits>::_Myval': decorated name length exceeded, name was truncated with [ _Traits=std::_Tmap_traits,std::allocator>,false> ] TemplateCache.cpp(243): warning C4503: 'std::_Tree>::erase': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] TemplateCache.cpp(243): warning C4503: 'std::map,std::allocator>>::try_emplace': decorated name length exceeded, name was truncated with [ _Kty=atomstruct::ResName, _Ty=tmpl::TemplateCache::ResMap ] TemplateCache.cpp(243): warning C4503: 'std::_Tree>::_Tree': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] TemplateCache.cpp(243): warning C4503: 'std::_Tree>::_Lbound': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] TemplateCache.cpp(243): warning C4503: 'std::_Tree>::_Copy': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] TemplateCache.cpp(243): warning C4503: 'std::_Tmap_traits<_Kty,_Ty,_Pr,_Alloc,false>::_Kfn': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] TemplateCache.cpp(243): warning C4503: 'std::map,std::allocator>>::_Try_emplace': decorated name length exceeded, name was truncated with [ _Kty=atomstruct::ResName, _Ty=tmpl::TemplateCache::ResMap ] TemplateCache.cpp(243): warning C4503: 'std::_Tree_comp_alloc<_Traits>::_Tree_comp_alloc': decorated name length exceeded, name was truncated with [ _Traits=std::_Tmap_traits,std::allocator>,false> ] TemplateCache.cpp(243): warning C4503: 'std::_Tree>::_Copy_nodes': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] TemplateCache.cpp(243): warning C4503: 'std::allocator_traits<_Alloc>::destroy': decorated name length exceeded, name was truncated with [ _Alloc=std::allocator,void *>> ] TemplateCache.cpp(243): warning C4503: 'std::allocator_traits<_Alloc>::construct': decorated name length exceeded, name was truncated with [ _Alloc=std::allocator,void *>> ] TemplateCache.cpp(243): warning C4503: 'std::_Tree>::emplace_hint': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] TemplateCache.cpp(243): warning C4503: 'std::pair>>>,bool>::pair': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap ] TemplateCache.cpp(243): warning C4503: 'std::_Compressed_pair,std::_Compressed_pair>,std::_Tree_val>>,true>,true>::_Compressed_pair': decorated name length exceeded, name was truncated with [ _Kty=atomstruct::ResName, _Other=std::_Tree_node,void *>, _Ty=tmpl::TemplateCache::ResMap ] TemplateCache.cpp(243): warning C4503: 'std::_Tree>::_Copy_or_move': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] TemplateCache.cpp(243): warning C4503: 'std::_Tree_comp_alloc<_Traits>::_Buynode': decorated name length exceeded, name was truncated with [ _Traits=std::_Tmap_traits,std::allocator>,false> ] TemplateCache.cpp(243): warning C4503: 'std::_Tree>::_Insert_hint': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] TemplateCache.cpp(243): warning C4503: 'std::_Compressed_pair>,std::_Tree_val>>,true>::_Compressed_pair': decorated name length exceeded, name was truncated with [ _Other=std::_Tree_node,void *>, _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap ] TemplateCache.cpp(243): warning C4503: 'std::_Tree>::_Insert_hint': decorated name length exceeded, name was truncated with [ _Kty=atomstruct::ResName, _Ty=tmpl::TemplateCache::AtomMap, _Pr=std::less, _Alloc=std::allocator> ] TemplateCache.cpp(243): warning C4503: 'std::_Wrap_alloc>::construct': decorated name length exceeded, name was truncated with [ _Other=std::_Tree_node,void *> ] TemplateCache.cpp(243): warning C4503: 'std::_Tree>::_Insert_at': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] TemplateCache.cpp(243): warning C4503: 'std::_Tree>::_Insert_nohint': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] TemplateCache.cpp(243): warning C4503: 'std::_Tree>::_Insert_at': decorated name length exceeded, name was truncated with [ _Kty=atomstruct::ResName, _Ty=tmpl::TemplateCache::AtomMap, _Pr=std::less, _Alloc=std::allocator> ] TemplateCache.cpp(243): warning C4503: 'std::_Tree>::_Insert_nohint': decorated name length exceeded, name was truncated with [ _Kty=atomstruct::ResName, _Ty=tmpl::TemplateCache::AtomMap, _Pr=std::less, _Alloc=std::allocator> ] TemplateCache.cpp(243): warning C4503: 'std::_Tree>::_Buynode_if_nil': decorated name length exceeded, name was truncated with [ _Kty=std::string, _Ty=tmpl::TemplateCache::ResMap, _Pr=std::less, _Alloc=std::allocator> ] TemplateCache.cpp(243): warning C4503: 'std::allocator<_Other>::construct': decorated name length exceeded, name was truncated with [ _Other=std::_Tree_node,void *> ] cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c Atom.cpp Atom.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c general.cpp general.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c CoordSet.cpp CoordSet.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c nucleic.cpp nucleic.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I/home/goddard/chimerax/build/include -I../../include /c camino.cpp camino.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\atomstruct_cpp\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception' make -C idatm install make[5]: Entering directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/atomstruct_cpp/tmpl/idatm' mkdir -p ../../../data/idatm/templates /home/goddard/chimerax/build/bin/rsync.convert -rlptWv templates/FORMAT templates/*.idatmres ../../../data/idatm/templates sending incremental file list A.idatmres ACE.idatmres ALA.idatmres ARG.idatmres ASN.idatmres ASP.idatmres C.idatmres CYS.idatmres DA.idatmres DC.idatmres DG.idatmres DT.idatmres FORMAT G.idatmres GLN.idatmres GLU.idatmres GLY.idatmres HID.idatmres HIE.idatmres HIP.idatmres HIS.idatmres HOH.idatmres HYP.idatmres ILE.idatmres LEU.idatmres LYS.idatmres MET.idatmres MSE.idatmres PHE.idatmres PRO.idatmres SER.idatmres T.idatmres THR.idatmres TRP.idatmres TYR.idatmres U.idatmres VAL.idatmres sent 8,561 bytes received 719 bytes 6,186.67 bytes/sec total size is 6,152 speedup is 0.66 make[5]: Leaving directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/atomstruct_cpp/tmpl/idatm' mkdir -p ../../include/atomstruct/tmpl /home/goddard/chimerax/build/bin/rsync.convert -rlptWv Residue.h CoordSet.h resinternal.h residues.h resDescrip.h Coord.h Bond.h restmpl.h Molecule.h TemplateCache.h Atom.h TAexcept.h ../../include/atomstruct/tmpl sending incremental file list Atom.h Bond.h Coord.h CoordSet.h Molecule.h Residue.h TAexcept.h TemplateCache.h resDescrip.h residues.h resinternal.h restmpl.h sent 20,066 bytes received 244 bytes 40,620.00 bytes/sec total size is 19,253 speedup is 0.95 make[4]: Leaving directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/atomstruct_cpp/tmpl' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 /LD /Felibatomstruct.dll Chain.obj CompSS.obj Bond.obj Structure.obj seq_assoc.obj StructureSeq.obj Ring.obj AtomTypes.obj PBManager.obj Atom.obj Residue.obj AtomicStructure.obj RingCalc.obj RibbonXSection.obj MolResId.obj CoordSet.obj ChangeTracker.obj PBGroup.obj Sequence.obj destruct.obj Point.obj Pseudobond.obj /link /LIBPATH:'C:/cygwin64/home/goddard/chimerax/build/lib' tmpl/*.obj /LIBPATH:../lib libelement.lib libpyinstance.lib libioutil.lib libchutil.lib libappdirs.lib liblogger.lib libarrays.lib python37.lib; if [ -e libatomstruct.dll.manifest ]; then mt -nologo -manifest libatomstruct.dll.manifest -outputresource:libatomstruct.dll\;2 ; fi Creating library libatomstruct.lib and object libatomstruct.exp ions.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VMolecule@tmpl@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance::~PythonInstance(void)) imported in function "int `public: __cdecl tmpl::Molecule::Molecule(class Molecule::dtor$7 const &)'::`1'::dtor$7" (?dtor$7@?0???0Molecule@tmpl@@QEAA@AEBV01@@Z@4HA) namino.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VMolecule@tmpl@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance::~PythonInstance(void)) imported in function "int `public: __cdecl tmpl::Molecule::Molecule(class Molecule::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0Molecule@tmpl@@QEAA@AEBV01@@Z@4HA) nucleic.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VMolecule@tmpl@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance::~PythonInstance(void)) imported in function "int `public: __cdecl tmpl::Molecule::Molecule(class Molecule::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0Molecule@tmpl@@QEAA@AEBV01@@Z@4HA) amino.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VMolecule@tmpl@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance::~PythonInstance(void)) imported in function "int `public: __cdecl tmpl::Molecule::Molecule(class Molecule::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0Molecule@tmpl@@QEAA@AEBV01@@Z@4HA) camino.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VMolecule@tmpl@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance::~PythonInstance(void)) imported in function "int `public: __cdecl tmpl::Molecule::Molecule(class Molecule::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0Molecule@tmpl@@QEAA@AEBV01@@Z@4HA) findres.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VMolecule@tmpl@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance::~PythonInstance(void)) imported in function "class tmpl::Residue const * __cdecl tmpl::find_template_residue(class std::basic_string,class std::allocator > const &,bool,bool)" (?find_template_residue@tmpl@@YAPEBVResidue@1@AEBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@_N1@Z) general.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VMolecule@tmpl@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance::~PythonInstance(void)) imported in function "public: class std::_Tree_iterator,class std::allocator > const ,class tmpl::Residue *> > > > __cdecl std::_Tree,class std::allocator >,class tmpl::Residue *,struct std::less,class std::allocator > >,class std::allocator,class std::allocator > const ,class tmpl::Residue *> >,0> >::erase(class std::_Tree_const_iterator,class std::allocator > const ,class tmpl::Residue *> > > >)" (?erase@?$_Tree@V?$_Tmap_traits@V?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@PEAVResidue@tmpl@@U?$less@V?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@@2@V?$allocator@U?$pair@$$CBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@PEAVResidue@tmpl@@@std@@@2@$0A@@std@@@std@@QEAA?AV?$_Tree_iterator@V?$_Tree_val@U?$_Tree_simple_types@U?$pair@$$CBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@PEAVResidue@tmpl@@@std@@@std@@@std@@@2@V?$_Tree_const_iterator@V?$_Tree_val@U?$_Tree_simple_types@U?$pair@$$CBV?$basic_string@DU?$char_traits@D@std@@V?$allocator@D@2@@std@@PEAVResidue@tmpl@@@std@@@std@@@std@@@2@@Z) ions.obj : warning LNK4049: locally defined symbol ??_7?$PythonInstance@VMolecule@tmpl@@@pyinstance@@6B@ (const pyinstance::PythonInstance::`vftable') imported namino.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VMolecule@tmpl@@@pyinstance@@6B@ (const pyinstance::PythonInstance::`vftable') imported in function "class tmpl::Residue * __cdecl tmpl::init_NALA(class tmpl::Molecule *)" (?init_NALA@tmpl@@YAPEAVResidue@1@PEAVMolecule@1@@Z) nucleic.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VMolecule@tmpl@@@pyinstance@@6B@ (const pyinstance::PythonInstance::`vftable') imported in function "class tmpl::Residue * __cdecl tmpl::init_DA3(class tmpl::Molecule *)" (?init_DA3@tmpl@@YAPEAVResidue@1@PEAVMolecule@1@@Z) amino.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VMolecule@tmpl@@@pyinstance@@6B@ (const pyinstance::PythonInstance::`vftable') imported in function "public: __cdecl tmpl::Molecule::Molecule(class tmpl::Molecule const &)" (??0Molecule@tmpl@@QEAA@AEBV01@@Z) camino.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VMolecule@tmpl@@@pyinstance@@6B@ (const pyinstance::PythonInstance::`vftable') imported in function "class tmpl::Residue * __cdecl tmpl::init_CALA(class tmpl::Molecule *)" (?init_CALA@tmpl@@YAPEAVResidue@1@PEAVMolecule@1@@Z) findres.obj : warning LNK4049: locally defined symbol ??_7?$PythonInstance@VMolecule@tmpl@@@pyinstance@@6B@ (const pyinstance::PythonInstance::`vftable') imported general.obj : warning LNK4049: locally defined symbol ??_7?$PythonInstance@VMolecule@tmpl@@@pyinstance@@6B@ (const pyinstance::PythonInstance::`vftable') imported MolResId.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VChangeTracker@atomstruct@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance::~PythonInstance(void)) imported in function "int `public: __cdecl atomstruct::ChangeTracker::ChangeTracker(class ChangeTracker::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0ChangeTracker@atomstruct@@QEAA@AEBV01@@Z@4HA) MolResId.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VResidue@atomstruct@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance::~PythonInstance(void)) imported in function "int `public: __cdecl atomstruct::Residue::Residue(class Residue::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0Residue@atomstruct@@QEAA@AEBV01@@Z@4HA) MolResId.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VSequence@atomstruct@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance::~PythonInstance(void)) imported in function "int `public: __cdecl atomstruct::Sequence::Sequence(class Sequence::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0Sequence@atomstruct@@QEAA@AEBV01@@Z@4HA) MolResId.obj : warning LNK4217: locally defined symbol ?py_instance@?$PythonInstance@VSequence@atomstruct@@@pyinstance@@QEBAPEAU_object@@_N@Z (public: struct _object * __cdecl pyinstance::PythonInstance::py_instance(bool)const ) imported in function "public: struct _object * __cdecl atomstruct::StructureSeq::py_instance(bool)" (?py_instance@StructureSeq@atomstruct@@QEAAPEAU_object@@_N@Z) MolResId.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VBaseManager@atomstruct@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance::~PythonInstance(void)) imported in function "int `public: __cdecl atomstruct::BaseManager::BaseManager(class BaseManager::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0BaseManager@atomstruct@@QEAA@AEBV01@@Z@4HA) MolResId.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VRing@atomstruct@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance::~PythonInstance(void)) imported in function "int `public: __cdecl atomstruct::Ring::Ring(class Ring::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0Ring@atomstruct@@QEAA@AEBV01@@Z@4HA) MolResId.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VStructure@atomstruct@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance::~PythonInstance(void)) imported in function "int `public: __cdecl atomstruct::Structure::Structure(class Structure::dtor$1 const &)'::`1'::dtor$1" (?dtor$1@?0???0Structure@atomstruct@@QEAA@AEBV01@@Z@4HA) MolResId.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VCoordSet@atomstruct@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance::~PythonInstance(void)) imported in function "int `public: __cdecl atomstruct::CoordSet::CoordSet(class CoordSet::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0CoordSet@atomstruct@@QEAA@AEBV01@@Z@4HA) MolResId.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VAtom@atomstruct@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance::~PythonInstance(void)) imported in function "int `public: __cdecl atomstruct::Atom::Atom(class Atom::dtor$0 const &)'::`1'::dtor$0" (?dtor$0@?0???0Atom@atomstruct@@QEAA@AEBV01@@Z@4HA) MolResId.obj : warning LNK4217: locally defined symbol ??1?$PythonInstance@VBond@atomstruct@@@pyinstance@@UEAA@XZ (public: virtual __cdecl pyinstance::PythonInstance::~PythonInstance(void)) imported in function "int `public: __cdecl atomstruct::Bond::Bond(class Bond::dtor$3 const &)'::`1'::dtor$3" (?dtor$3@?0???0Bond@atomstruct@@QEAA@AEBV01@@Z@4HA) MolResId.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VChangeTracker@atomstruct@@@pyinstance@@6B@ (const pyinstance::PythonInstance::`vftable') imported in function "public: __cdecl atomstruct::ChangeTracker::ChangeTracker(class atomstruct::ChangeTracker const &)" (??0ChangeTracker@atomstruct@@QEAA@AEBV01@@Z) MolResId.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VResidue@atomstruct@@@pyinstance@@6B@ (const pyinstance::PythonInstance::`vftable') imported in function "public: __cdecl atomstruct::Residue::Residue(class atomstruct::Residue const &)" (??0Residue@atomstruct@@QEAA@AEBV01@@Z) MolResId.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VSequence@atomstruct@@@pyinstance@@6B@ (const pyinstance::PythonInstance::`vftable') imported in function "public: __cdecl atomstruct::Sequence::Sequence(class atomstruct::Sequence const &)" (??0Sequence@atomstruct@@QEAA@AEBV01@@Z) MolResId.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VBaseManager@atomstruct@@@pyinstance@@6B@ (const pyinstance::PythonInstance::`vftable') imported in function "public: __cdecl atomstruct::BaseManager::BaseManager(class atomstruct::BaseManager const &)" (??0BaseManager@atomstruct@@QEAA@AEBV01@@Z) MolResId.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VRing@atomstruct@@@pyinstance@@6B@ (const pyinstance::PythonInstance::`vftable') imported in function "public: __cdecl atomstruct::Ring::Ring(class atomstruct::Ring const &)" (??0Ring@atomstruct@@QEAA@AEBV01@@Z) MolResId.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VStructure@atomstruct@@@pyinstance@@6B@ (const pyinstance::PythonInstance::`vftable') imported in function "public: __cdecl atomstruct::Structure::Structure(class atomstruct::Structure const &)" (??0Structure@atomstruct@@QEAA@AEBV01@@Z) MolResId.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VCoordSet@atomstruct@@@pyinstance@@6B@ (const pyinstance::PythonInstance::`vftable') imported in function "public: __cdecl atomstruct::CoordSet::CoordSet(class atomstruct::CoordSet const &)" (??0CoordSet@atomstruct@@QEAA@AEBV01@@Z) MolResId.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VAtom@atomstruct@@@pyinstance@@6B@ (const pyinstance::PythonInstance::`vftable') imported in function "public: __cdecl atomstruct::Atom::Atom(class atomstruct::Atom const &)" (??0Atom@atomstruct@@QEAA@AEBV01@@Z) MolResId.obj : warning LNK4217: locally defined symbol ??_7?$PythonInstance@VBond@atomstruct@@@pyinstance@@6B@ (const pyinstance::PythonInstance::`vftable') imported in function "public: __cdecl atomstruct::Bond::Bond(class atomstruct::Bond const &)" (??0Bond@atomstruct@@QEAA@AEBV01@@Z) /home/goddard/chimerax/build/bin/rsync.convert -rlptWv libatomstruct.dll ../lib sending incremental file list libatomstruct.dll sent 1,741,833 bytes received 35 bytes 3,483,736.00 bytes/sec total size is 1,741,312 speedup is 1.00 /home/goddard/chimerax/build/bin/rsync.convert -rlptWv libatomstruct.lib ../lib sending incremental file list libatomstruct.lib sent 724,175 bytes received 35 bytes 1,448,420.00 bytes/sec total size is 723,902 speedup is 1.00 /home/goddard/chimerax/build/bin/rsync.convert -rlptWv imex.h Connection.h AtomicStructure.h session.h RibbonXSection.h MolResId.h PBManager.h CoordSet.h Structure.h ChangeTracker.h PBGroup.h polymer.h backbone.h Sequence.h Real.h destruct.h Chain.h seq_assoc.h Coord.h Bond.h Pseudobond.h Residue.h StructureSeq.h Ring.h Point.h Atom.h string_types.h Rgba.h ../include/atomstruct/ sending incremental file list Atom.h AtomicStructure.h Bond.h Chain.h ChangeTracker.h Connection.h Coord.h CoordSet.h MolResId.h PBGroup.h PBManager.h Point.h Pseudobond.h Real.h Residue.h Rgba.h RibbonXSection.h Ring.h Sequence.h Structure.h StructureSeq.h backbone.h destruct.h imex.h polymer.h seq_assoc.h session.h string_types.h sent 143,331 bytes received 548 bytes 95,919.33 bytes/sec total size is 141,429 speedup is 0.98 make[3]: Leaving directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp/atomstruct_cpp' cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 -I'C:/cygwin64/home/goddard/chimerax/build/include' -I'C:/cygwin64/home/goddard/chimerax/build/include/python3.7m' -I"C:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include" -Iinclude /c molc.cpp molc.cpp c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float' include\atomstruct/PBGroup.h(66): warning C4305: 'initializing': truncation from 'double' to 'float' include\atomstruct/seq_assoc.h(74): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'atomstruct::SA_AssocFailure' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error' include\atomstruct/seq_assoc.h(74): note: see declaration of 'atomstruct::SA_AssocFailure' C:/cygwin64/home/goddard/chimerax/build/include\pysupport/convert.h(252): warning C4244: 'return': conversion from 'double' to 'long', possible loss of data cl /nologo /EHa /GR /GF /MD /Zc:inline,rvalueCast,strictStrings /wd4251 /Ox /W2 /LD /Felibmolc.dll molc.obj /link /LIBPATH:'C:/cygwin64/home/goddard/chimerax/build/lib' /LIBPATH:lib libatomstruct.lib libelement.lib libpyinstance.lib libarrays.lib liblogger.lib libappdirs.lib python37.lib; if [ -e libmolc.dll.manifest ]; then mt -nologo -manifest libmolc.dll.manifest -outputresource:libmolc.dll\;2 ; fi Creating library libmolc.lib and object libmolc.exp LDFLAGS="-L." /home/goddard/chimerax/build/bin/python.exe setup-cymol.py build_ext -i Please put "# distutils: language=c++" in your .pyx or .pxd file(s) Compiling cymol.pyx because it changed. [1/1] Cythonizing cymol.pyx running build_ext building 'chimerax.atomic.cymol' extension creating build creating build\temp.win-amd64-3.7 creating build\temp.win-amd64-3.7\Release C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\bin\amd64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -Iinclude -IC:\cygwin64\home\goddard\chimerax\build\include -IC:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include -IC:\cygwin64\home\goddard\chimerax\build\bin\include -IC:\cygwin64\home\goddard\chimerax\build\bin\include "-IC:\Program Files (x86)\Windows Kits\NETFXSDK\4.6.1\include\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.10586.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.10586.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.10586.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.10586.0\winrt" /EHsc /Tpcymol.cpp /Fobuild\temp.win-amd64-3.7\Release\cymol.obj cymol.cpp include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' include\pyinstance/PythonInstance.declare.h(93): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' include\element/Element.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled include\element/Element.h(65): warning C4251: 'element::Element::_alkali_metals': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'element::Element' with [ _Kty=int ] include\element/Element.h(65): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=int ] include\element/Element.h(66): warning C4251: 'element::Element::_elements': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'element::Element' with [ _Kty=int, _Ty=const element::Element * ] include\element/Element.h(66): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=int, _Ty=const element::Element * ] include\element/Element.h(67): warning C4251: 'element::Element::_halogens': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'element::Element' with [ _Kty=int ] include\element/Element.h(65): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=int ] include\element/Element.h(68): warning C4251: 'element::Element::_names': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'element::Element' with [ _Kty=std::string ] include\element/Element.h(68): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=std::string ] include\element/Element.h(69): warning C4251: 'element::Element::_noble_gases': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'element::Element' with [ _Kty=int ] include\element/Element.h(65): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=int ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(48): warning C4251: 'atomstruct::Changes::created': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes' with [ _Kty=const void * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(48): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=const void * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(49): warning C4251: 'atomstruct::Changes::modified': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes' with [ _Kty=const void * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(48): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=const void * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(50): warning C4251: 'atomstruct::Changes::reasons': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes' with [ _Kty=std::string ] include\element/Element.h(68): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=std::string ] include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(71): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' with [ _Kty=atomstruct::Structure *, _Ty=atomstruct::ChangeTracker::ChangesArray ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(71): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=atomstruct::Structure *, _Ty=atomstruct::ChangeTracker::ChangesArray ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(72): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' with [ _Kty=atomstruct::Structure * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(72): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=atomstruct::Structure * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(81): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(84): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(85): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(86): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(87): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(88): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(89): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(90): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(91): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_IS_BACKBONE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(288): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\destruct.h(42): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator' with [ _Kty=atomstruct::DestructionObserver * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\destruct.h(42): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=atomstruct::DestructionObserver * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\destruct.h(43): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator' with [ _Kty=void * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\destruct.h(31): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=void * ] include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(45): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(51): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence' with [ _Kty=std::string, _Ty=char ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(49): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=std::string, _Ty=char ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(52): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence' with [ _Kty=std::string, _Ty=char ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(49): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=std::string, _Ty=char ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(53): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence' with [ _Kty=std::string, _Ty=char ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(49): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=std::string, _Ty=char ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(55): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence' with [ _Kty=unsigned int, _Ty=unsigned int ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(55): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=unsigned int, _Ty=unsigned int ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(56): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence' with [ _Kty=unsigned int, _Ty=unsigned int ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(55): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=unsigned int, _Ty=unsigned int ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(57): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(47): note: see declaration of 'std::vector>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(62): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(47): note: see declaration of 'std::vector>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(127): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(50): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(53): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq' with [ _Kty=atomstruct::Residue *, _Ty=atomstruct::StructureSeq::std::SeqPos ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(40): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=atomstruct::Residue *, _Ty=atomstruct::StructureSeq::std::SeqPos ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(54): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq' with [ _Ty=atomstruct::Residue * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(39): note: see declaration of 'std::vector>' with [ _Ty=atomstruct::Residue * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(106): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\PBManager.h(42): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\PBManager.h(52): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager' with [ _Kty=std::string, _Ty=atomstruct::Proxy_PBGroup * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\PBManager.h(47): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=std::string, _Ty=atomstruct::Proxy_PBGroup * ] include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(26): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(31): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring' with [ _Kty=atomstruct::Bond * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(29): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=atomstruct::Bond * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(32): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring' with [ _Kty=atomstruct::Atom * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(28): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=atomstruct::Atom * ] include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(96): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(130): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure' with [ _Kty=atomstruct::Atom * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(49): note: see declaration of 'std::vector>' with [ _Kty=atomstruct::Atom * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(132): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure' with [ _Kty=atomstruct::Bond * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(48): note: see declaration of 'std::vector>' with [ _Kty=atomstruct::Bond * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(135): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure' with [ _Ty=atomstruct::CoordSet * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(106): note: see declaration of 'std::vector>' with [ _Ty=atomstruct::CoordSet * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(138): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map>,std::less<_Kty>,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure' with [ _Kty=std::string, _Ty=std::vector> ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(107): note: see declaration of 'std::map>,std::less<_Kty>,std::allocator>>' with [ _Kty=std::string, _Ty=std::vector> ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure' with [ _Ty=atomstruct::Residue * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(39): note: see declaration of 'std::vector>' with [ _Ty=atomstruct::Residue * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_rings': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure' with [ _Kty=atomstruct::Ring ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(115): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=atomstruct::Ring ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(241): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(246): warning C4251: 'atomstruct::Structure::metadata': class 'std::map>,std::less<_Kty>,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure' with [ _Kty=std::string, _Ty=std::vector> ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(107): note: see declaration of 'std::map>,std::less<_Kty>,std::allocator>>' with [ _Kty=std::string, _Ty=std::vector> ] include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(30): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(38): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet' with [ _Ty=atomstruct::Coord ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(35): note: see declaration of 'std::vector>' with [ _Ty=atomstruct::Coord ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(40): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map,std::equal_to<_Kty>,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet' with [ _Kty=const atomstruct::Atom *, _Ty=float ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(40): note: see declaration of 'std::unordered_map,std::equal_to<_Kty>,std::allocator>>' with [ _Kty=const atomstruct::Atom *, _Ty=float ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(41): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map,std::equal_to<_Kty>,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet' with [ _Kty=const atomstruct::Atom *, _Ty=float ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(40): note: see declaration of 'std::unordered_map,std::equal_to<_Kty>,std::allocator>>' with [ _Kty=const atomstruct::Atom *, _Ty=float ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(63): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(66): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' include\atomstruct/Atom.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled include\atomstruct/Atom.h(113): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom' with [ _Kty=unsigned char, _Ty=atomstruct::Atom::_Alt_loc_info ] include\atomstruct/Atom.h(112): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=unsigned char, _Ty=atomstruct::Atom::_Alt_loc_info ] include\atomstruct/Atom.h(115): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom' with [ _Kty=atomstruct::Bond * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(48): note: see declaration of 'std::vector>' with [ _Kty=atomstruct::Bond * ] include\atomstruct/Atom.h(116): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\string_types.h(29): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' include\atomstruct/Atom.h(123): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\string_types.h(29): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' include\atomstruct/Atom.h(125): warning C4251: 'atomstruct::Atom::_name': class 'chutil::CString<5,65,116,111,109,32,78,97,109,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\string_types.h(27): note: see declaration of 'chutil::CString<5,65,116,111,109,32,78,97,109,101>' include\atomstruct/Atom.h(126): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom' with [ _Kty=atomstruct::Atom * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(49): note: see declaration of 'std::vector>' with [ _Kty=atomstruct::Atom * ] include\atomstruct/Atom.h(131): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom' with [ _Ty=const atomstruct::Ring * ] include\atomstruct/Atom.h(80): note: see declaration of 'std::vector>' with [ _Ty=const atomstruct::Ring * ] include\atomstruct/Atom.h(187): warning C4244: '=': conversion from 'double' to 'float', possible loss of data include\atomstruct/Atom.h(191): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data include\atomstruct/Atom.h(205): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' include\atomstruct/Residue.h(41): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled include\atomstruct/Residue.h(69): warning C4251: 'atomstruct::Residue::_atoms': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue' with [ _Kty=atomstruct::Atom * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(49): note: see declaration of 'std::vector>' with [ _Kty=atomstruct::Atom * ] include\atomstruct/Residue.h(71): warning C4251: 'atomstruct::Residue::_chain_id': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' include\atomstruct/Residue.h(73): warning C4251: 'atomstruct::Residue::_mmcif_chain_id': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' include\atomstruct/Residue.h(74): warning C4251: 'atomstruct::Residue::_name': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' include\atomstruct/Residue.h(138): warning C4251: 'atomstruct::Residue::aa_min_backbone_names': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(138): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(139): warning C4251: 'atomstruct::Residue::aa_min_ordered_backbone_names': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(139): note: see declaration of 'std::vector>' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(140): warning C4251: 'atomstruct::Residue::aa_max_backbone_names': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(138): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(141): warning C4251: 'atomstruct::Residue::aa_ribbon_backbone_names': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(138): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(142): warning C4251: 'atomstruct::Residue::aa_side_connector_names': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(138): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(143): warning C4251: 'atomstruct::Residue::na_min_backbone_names': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(138): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(144): warning C4251: 'atomstruct::Residue::na_min_ordered_backbone_names': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(139): note: see declaration of 'std::vector>' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(145): warning C4251: 'atomstruct::Residue::na_max_backbone_names': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(138): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(146): warning C4251: 'atomstruct::Residue::na_ribbon_backbone_names': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(138): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(147): warning C4251: 'atomstruct::Residue::na_side_connector_names': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(138): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(148): warning C4251: 'atomstruct::Residue::ribose_names': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(138): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=atomstruct::AtomName ] include\atomstruct/Residue.h(149): warning C4251: 'atomstruct::Residue::std_solvent_names': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue' with [ _Kty=std::string ] include\element/Element.h(68): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=std::string ] include\atomstruct/Residue.h(150): warning C4251: 'atomstruct::Residue::std_water_names': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue' with [ _Kty=std::string ] include\element/Element.h(68): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=std::string ] include\atomstruct/Residue.h(151): warning C4251: 'atomstruct::Residue::ideal_chirality': class 'std::map,std::allocator>>,std::less,std::allocator<_Ty>>>,std::allocator,std::allocator<_Ty>>,std::map<_Kty,_Ty,std::less<_Kty>,std::allocator>>>>>' needs to have dll-interface to be used by clients of class 'atomstruct::Residue' with [ _Kty=atomstruct::AtomName, _Ty=char ] include\atomstruct/Residue.h(151): note: see declaration of 'std::map,std::allocator>>,std::less,std::allocator<_Ty>>>,std::allocator,std::allocator<_Ty>>,std::map<_Kty,_Ty,std::less<_Kty>,std::allocator>>>>>' with [ _Kty=atomstruct::AtomName, _Ty=char ] include\atomstruct/Residue.h(117): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Connection.h(60): warning C4305: 'initializing': truncation from 'double' to 'float' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Connection.h(85): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning) c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Connection.h(87): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning) c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Connection.h(88): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning) include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Bond.h(36): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Bond.h(48): warning C4251: 'atomstruct::Bond::_rings': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Bond' with [ _Ty=const atomstruct::Ring * ] include\atomstruct/Atom.h(80): note: see declaration of 'std::vector>' with [ _Ty=const atomstruct::Ring * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Bond.h(116): warning C4267: '=': conversion from 'size_t' to 'int', possible loss of data cymol.cpp(3856): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data cymol.cpp(6353): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning) cymol.cpp(8041): warning C4267: 'argument': conversion from 'size_t' to 'int', possible loss of data cymol.cpp(8943): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning) cymol.cpp(10146): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data cymol.cpp(10855): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data cymol.cpp(11151): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning) cymol.cpp(11152): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning) cymol.cpp(11153): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning) cymol.cpp(11471): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning) cymol.cpp(11732): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning) cymol.cpp(11733): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data cymol.cpp(18956): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data cymol.cpp(19109): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning) cymol.cpp(19261): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning) cymol.cpp(23062): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning) cymol.cpp(23214): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning) cymol.cpp(23660): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning) cymol.cpp(24225): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning) cymol.cpp(26263): warning C4244: 'argument': conversion from 'long' to 'char', possible loss of data creating C:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\chimerax creating C:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\chimerax\atomic C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\bin\amd64\link.exe /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:lib /LIBPATH:C:\cygwin64\home\goddard\chimerax\build\lib /LIBPATH:C:\cygwin64\home\goddard\chimerax\build\bin\libs /LIBPATH:C:\cygwin64\home\goddard\chimerax\build\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\NETFXSDK\4.6.1\lib\um\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.16299.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.16299.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\lib\amd64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\atlmfc\lib\amd64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.10586.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.10586.0\um\x64" libatomstruct.lib libelement.lib /EXPORT:PyInit_cymol build\temp.win-amd64-3.7\Release\cymol.obj /OUT:C:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\chimerax\atomic\cymol.cp37-win_amd64.pyd /IMPLIB:build\temp.win-amd64-3.7\Release\cymol.cp37-win_amd64.lib cymol.obj : warning LNK4197: export 'PyInit_cymol' specified multiple times; using first specification Creating library build\temp.win-amd64-3.7\Release\cymol.cp37-win_amd64.lib and object build\temp.win-amd64-3.7\Release\cymol.cp37-win_amd64.exp Generating code Finished generating code mv chimerax/atomic/cymol.cp*.pyd cymol.pyd rmdir -p chimerax/atomic LDFLAGS="-L." /home/goddard/chimerax/build/bin/python.exe setup-cytmpl.py build_ext -i Please put "# distutils: language=c++" in your .pyx or .pxd file(s) Compiling cytmpl.pyx because it changed. [1/1] Cythonizing cytmpl.pyx running build_ext building 'chimerax.atomic.cytmpl' extension C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\bin\amd64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -Iinclude -IC:\cygwin64\home\goddard\chimerax\build\include -IC:\cygwin64\home\goddard\chimerax\build\bin\lib\site-packages\numpy\core\include -IC:\cygwin64\home\goddard\chimerax\build\bin\include -IC:\cygwin64\home\goddard\chimerax\build\bin\include "-IC:\Program Files (x86)\Windows Kits\NETFXSDK\4.6.1\include\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\cppwinrt" "-Ic:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include" "-Ic:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\atlmfc\include" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.10586.0\ucrt" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.10586.0\shared" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.10586.0\um" "-Ic:\Program Files (x86)\Windows Kits\10\include\10.0.10586.0\winrt" /EHsc /Tpcytmpl.cpp /Fobuild\temp.win-amd64-3.7\Release\cytmpl.obj cytmpl.cpp include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' include\pyinstance/PythonInstance.declare.h(93): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' include\element/Element.h(38): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled include\element/Element.h(65): warning C4251: 'element::Element::_alkali_metals': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'element::Element' with [ _Kty=int ] include\element/Element.h(65): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=int ] include\element/Element.h(66): warning C4251: 'element::Element::_elements': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'element::Element' with [ _Kty=int, _Ty=const element::Element * ] include\element/Element.h(66): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=int, _Ty=const element::Element * ] include\element/Element.h(67): warning C4251: 'element::Element::_halogens': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'element::Element' with [ _Kty=int ] include\element/Element.h(65): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=int ] include\element/Element.h(68): warning C4251: 'element::Element::_names': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'element::Element' with [ _Kty=std::string ] include\element/Element.h(68): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=std::string ] include\element/Element.h(69): warning C4251: 'element::Element::_noble_gases': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'element::Element' with [ _Kty=int ] include\element/Element.h(65): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=int ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(48): warning C4251: 'atomstruct::Changes::created': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes' with [ _Kty=const void * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(48): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=const void * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(49): warning C4251: 'atomstruct::Changes::modified': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes' with [ _Kty=const void * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(48): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=const void * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(50): warning C4251: 'atomstruct::Changes::reasons': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Changes' with [ _Kty=std::string ] include\element/Element.h(68): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=std::string ] include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(71): warning C4251: 'atomstruct::ChangeTracker::_structure_type_changes': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' with [ _Kty=atomstruct::Structure *, _Ty=atomstruct::ChangeTracker::ChangesArray ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(71): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=atomstruct::Structure *, _Ty=atomstruct::ChangeTracker::ChangesArray ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(72): warning C4251: 'atomstruct::ChangeTracker::_dead_structures': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' with [ _Kty=atomstruct::Structure * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(72): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=atomstruct::Structure * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(81): warning C4251: 'atomstruct::ChangeTracker::REASON_ACTIVE_COORD_SET': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(82): warning C4251: 'atomstruct::ChangeTracker::REASON_ALT_LOC': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(83): warning C4251: 'atomstruct::ChangeTracker::REASON_ANISO_U': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(84): warning C4251: 'atomstruct::ChangeTracker::REASON_BALL_SCALE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(85): warning C4251: 'atomstruct::ChangeTracker::REASON_BFACTOR': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(86): warning C4251: 'atomstruct::ChangeTracker::REASON_COLOR': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(87): warning C4251: 'atomstruct::ChangeTracker::REASON_COORD': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(88): warning C4251: 'atomstruct::ChangeTracker::REASON_COORDSET': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(89): warning C4251: 'atomstruct::ChangeTracker::REASON_DISPLAY': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(90): warning C4251: 'atomstruct::ChangeTracker::REASON_DRAW_MODE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(91): warning C4251: 'atomstruct::ChangeTracker::REASON_HALFBOND': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(92): warning C4251: 'atomstruct::ChangeTracker::REASON_HIDE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(93): warning C4251: 'atomstruct::ChangeTracker::REASON_IDATM_TYPE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(94): warning C4251: 'atomstruct::ChangeTracker::REASON_IS_BACKBONE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(95): warning C4251: 'atomstruct::ChangeTracker::REASON_NAME': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(96): warning C4251: 'atomstruct::ChangeTracker::REASON_OCCUPANCY': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(97): warning C4251: 'atomstruct::ChangeTracker::REASON_RADIUS': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(98): warning C4251: 'atomstruct::ChangeTracker::REASON_RESIDUES': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(99): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ADJUST': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(100): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_COLOR': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(101): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_DISPLAY': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(102): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_HIDE_BACKBONE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(103): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_TETHER': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(104): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_ORIENTATION': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(105): warning C4251: 'atomstruct::ChangeTracker::REASON_RIBBON_MODE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(106): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_COLOR': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(107): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_DISPLAY': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(108): warning C4251: 'atomstruct::ChangeTracker::REASON_RING_MODE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(109): warning C4251: 'atomstruct::ChangeTracker::REASON_SCENE_COORD': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(110): warning C4251: 'atomstruct::ChangeTracker::REASON_SELECTED': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(111): warning C4251: 'atomstruct::ChangeTracker::REASON_SEQUENCE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(112): warning C4251: 'atomstruct::ChangeTracker::REASON_SERIAL_NUMBER': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(113): warning C4251: 'atomstruct::ChangeTracker::REASON_STRUCTURE_CATEGORY': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(114): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_ID': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(115): warning C4251: 'atomstruct::ChangeTracker::REASON_SS_TYPE': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\ChangeTracker.h(288): warning C4251: 'atomstruct::ChangeTracker::python_class_names': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::ChangeTracker' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\destruct.h(42): warning C4251: 'atomstruct::DestructionCoordinator::_observers': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator' with [ _Kty=atomstruct::DestructionObserver * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\destruct.h(42): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=atomstruct::DestructionObserver * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\destruct.h(43): warning C4251: 'atomstruct::DestructionCoordinator::_destroyed': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::DestructionCoordinator' with [ _Kty=void * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\destruct.h(31): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=void * ] include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(45): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(51): warning C4251: 'atomstruct::Sequence::_nucleic3to1': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence' with [ _Kty=std::string, _Ty=char ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(49): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=std::string, _Ty=char ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(52): warning C4251: 'atomstruct::Sequence::_protein3to1': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence' with [ _Kty=std::string, _Ty=char ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(49): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=std::string, _Ty=char ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(53): warning C4251: 'atomstruct::Sequence::_rname3to1': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence' with [ _Kty=std::string, _Ty=char ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(49): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=std::string, _Ty=char ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(55): warning C4251: 'atomstruct::Sequence::_cache_g2ug': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence' with [ _Kty=unsigned int, _Ty=unsigned int ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(55): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=unsigned int, _Ty=unsigned int ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(56): warning C4251: 'atomstruct::Sequence::_cache_ug2g': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence' with [ _Kty=unsigned int, _Ty=unsigned int ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(55): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=unsigned int, _Ty=unsigned int ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(57): warning C4251: 'atomstruct::Sequence::_cache_ungapped': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(47): note: see declaration of 'std::vector>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(62): warning C4251: 'atomstruct::Sequence::_contents': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(47): note: see declaration of 'std::vector>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(63): warning C4251: 'atomstruct::Sequence::_name': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::Sequence' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Sequence.h(127): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(50): warning C4251: 'atomstruct::StructureSeq::_chain_id': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(53): warning C4251: 'atomstruct::StructureSeq::_res_map': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq' with [ _Kty=atomstruct::Residue *, _Ty=atomstruct::StructureSeq::std::SeqPos ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(40): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=atomstruct::Residue *, _Ty=atomstruct::StructureSeq::std::SeqPos ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(54): warning C4251: 'atomstruct::StructureSeq::_residues': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::StructureSeq' with [ _Ty=atomstruct::Residue * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(39): note: see declaration of 'std::vector>' with [ _Ty=atomstruct::Residue * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(106): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\PBManager.h(42): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\PBManager.h(52): warning C4251: 'atomstruct::BaseManager::_groups': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::BaseManager' with [ _Kty=std::string, _Ty=atomstruct::Proxy_PBGroup * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\PBManager.h(47): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=std::string, _Ty=atomstruct::Proxy_PBGroup * ] include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(26): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(31): warning C4251: 'atomstruct::Ring::_bonds': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring' with [ _Kty=atomstruct::Bond * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(29): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=atomstruct::Bond * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(32): warning C4251: 'atomstruct::Ring::_atoms': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Ring' with [ _Kty=atomstruct::Atom * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(28): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=atomstruct::Atom * ] include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(96): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(130): warning C4251: 'atomstruct::Structure::_atoms': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure' with [ _Kty=atomstruct::Atom * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(49): note: see declaration of 'std::vector>' with [ _Kty=atomstruct::Atom * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(132): warning C4251: 'atomstruct::Structure::_bonds': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure' with [ _Kty=atomstruct::Bond * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(48): note: see declaration of 'std::vector>' with [ _Kty=atomstruct::Bond * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(135): warning C4251: 'atomstruct::Structure::_coord_sets': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure' with [ _Ty=atomstruct::CoordSet * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(106): note: see declaration of 'std::vector>' with [ _Ty=atomstruct::CoordSet * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(138): warning C4251: 'atomstruct::Structure::_input_seq_info': class 'std::map>,std::less<_Kty>,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure' with [ _Kty=std::string, _Ty=std::vector> ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(107): note: see declaration of 'std::map>,std::less<_Kty>,std::allocator>>' with [ _Kty=std::string, _Ty=std::vector> ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(145): warning C4251: 'atomstruct::Structure::_residues': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure' with [ _Ty=atomstruct::Residue * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\StructureSeq.h(39): note: see declaration of 'std::vector>' with [ _Ty=atomstruct::Residue * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(156): warning C4251: 'atomstruct::Structure::_rings': class 'std::set,std::allocator<_Kty>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure' with [ _Kty=atomstruct::Ring ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(115): note: see declaration of 'std::set,std::allocator<_Kty>>' with [ _Kty=atomstruct::Ring ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(241): warning C4251: 'atomstruct::Structure::input_seq_source': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(246): warning C4251: 'atomstruct::Structure::metadata': class 'std::map>,std::less<_Kty>,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::Structure' with [ _Kty=std::string, _Ty=std::vector> ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Structure.h(107): note: see declaration of 'std::map>,std::less<_Kty>,std::allocator>>' with [ _Kty=std::string, _Ty=std::vector> ] include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(30): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(38): warning C4251: 'atomstruct::CoordSet::_coords': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet' with [ _Ty=atomstruct::Coord ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(35): note: see declaration of 'std::vector>' with [ _Ty=atomstruct::Coord ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(40): warning C4251: 'atomstruct::CoordSet::_bfactor_map': class 'std::unordered_map,std::equal_to<_Kty>,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet' with [ _Kty=const atomstruct::Atom *, _Ty=float ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(40): note: see declaration of 'std::unordered_map,std::equal_to<_Kty>,std::allocator>>' with [ _Kty=const atomstruct::Atom *, _Ty=float ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(41): warning C4251: 'atomstruct::CoordSet::_occupancy_map': class 'std::unordered_map,std::equal_to<_Kty>,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::CoordSet' with [ _Kty=const atomstruct::Atom *, _Ty=float ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(40): note: see declaration of 'std::unordered_map,std::equal_to<_Kty>,std::allocator>>' with [ _Kty=const atomstruct::Atom *, _Ty=float ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(63): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(66): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' include\atomstruct/Atom.h(57): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled include\atomstruct/Atom.h(113): warning C4251: 'atomstruct::Atom::_alt_loc_map': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom' with [ _Kty=unsigned char, _Ty=atomstruct::Atom::_Alt_loc_info ] include\atomstruct/Atom.h(112): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=unsigned char, _Ty=atomstruct::Atom::_Alt_loc_info ] include\atomstruct/Atom.h(115): warning C4251: 'atomstruct::Atom::_bonds': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom' with [ _Kty=atomstruct::Bond * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(48): note: see declaration of 'std::vector>' with [ _Kty=atomstruct::Bond * ] include\atomstruct/Atom.h(116): warning C4251: 'atomstruct::Atom::_computed_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\string_types.h(29): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' include\atomstruct/Atom.h(123): warning C4251: 'atomstruct::Atom::_explicit_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\string_types.h(29): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' include\atomstruct/Atom.h(125): warning C4251: 'atomstruct::Atom::_name': class 'chutil::CString<5,65,116,111,109,32,78,97,109,101>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\string_types.h(27): note: see declaration of 'chutil::CString<5,65,116,111,109,32,78,97,109,101>' include\atomstruct/Atom.h(126): warning C4251: 'atomstruct::Atom::_neighbors': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom' with [ _Kty=atomstruct::Atom * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\Ring.h(49): note: see declaration of 'std::vector>' with [ _Kty=atomstruct::Atom * ] include\atomstruct/Atom.h(131): warning C4251: 'atomstruct::Atom::_rings': class 'std::vector>' needs to have dll-interface to be used by clients of class 'atomstruct::Atom' with [ _Ty=const atomstruct::Ring * ] include\atomstruct/Atom.h(80): note: see declaration of 'std::vector>' with [ _Ty=const atomstruct::Ring * ] include\atomstruct/Atom.h(187): warning C4244: '=': conversion from 'double' to 'float', possible loss of data include\atomstruct/Atom.h(191): warning C4244: 'return': conversion from 'double' to 'float', possible loss of data include\atomstruct/Atom.h(205): warning C4267: 'return': conversion from 'size_t' to 'int', possible loss of data include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\CoordSet.h(28): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\CoordSet.h(33): warning C4251: 'tmpl::CoordSet::_coords': class 'std::vector>' needs to have dll-interface to be used by clients of class 'tmpl::CoordSet' with [ _Ty=atomstruct::Coord ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\CoordSet.h(35): note: see declaration of 'std::vector>' with [ _Ty=atomstruct::Coord ] include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' include\atomstruct/tmpl/Atom.h(37): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled include\atomstruct/tmpl/Atom.h(47): warning C4251: 'tmpl::Atom::_bonds': class 'std::vector>' needs to have dll-interface to be used by clients of class 'tmpl::Atom' with [ _Ty=tmpl::Bond * ] include\atomstruct/tmpl/Atom.h(39): note: see declaration of 'std::vector>' with [ _Ty=tmpl::Bond * ] include\atomstruct/tmpl/Atom.h(49): warning C4251: 'tmpl::Atom::_idatm_type': class 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\string_types.h(29): note: see declaration of 'chutil::CString<5,65,116,111,109,32,84,121,112,101>' include\atomstruct/tmpl/Atom.h(52): warning C4251: 'tmpl::Atom::_name': class 'chutil::CString<5,65,116,111,109,32,78,97,109,101>' needs to have dll-interface to be used by clients of class 'tmpl::Atom' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\string_types.h(27): note: see declaration of 'chutil::CString<5,65,116,111,109,32,78,97,109,101>' include\atomstruct/tmpl/Atom.h(53): warning C4251: 'tmpl::Atom::_neighbors': class 'std::vector>' needs to have dll-interface to be used by clients of class 'tmpl::Atom' with [ _Ty=tmpl::Atom * ] include\atomstruct/tmpl/Atom.h(40): note: see declaration of 'std::vector>' with [ _Ty=tmpl::Atom * ] include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Bond.h(28): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\TAexcept.h(25): warning C4275: non dll-interface class 'std::runtime_error' used as base for dll-interface class 'tmpl::TA_exception' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\stdexcept(156): note: see declaration of 'std::runtime_error' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\TAexcept.h(25): note: see declaration of 'tmpl::TA_exception' include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Residue.h(34): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Residue.h(71): warning C4251: 'tmpl::Residue::_name': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'tmpl::Residue' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Residue.h(72): warning C4251: 'tmpl::Residue::_atoms': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'tmpl::Residue' with [ _Kty=atomstruct::AtomName, _Ty=tmpl::Atom * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Residue.h(65): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=atomstruct::AtomName, _Ty=tmpl::Atom * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Residue.h(74): warning C4251: 'tmpl::Residue::_description': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'tmpl::Residue' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Residue.h(75): warning C4251: 'tmpl::Residue::_link_atoms': class 'std::vector>' needs to have dll-interface to be used by clients of class 'tmpl::Residue' with [ _Ty=tmpl::Atom * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Atom.h(40): note: see declaration of 'std::vector>' with [ _Ty=tmpl::Atom * ] include\pyinstance/PythonInstance.declare.h(67): warning C4251: 'pyinstance::PythonInstance::_buffer': class 'std::basic_string,std::allocator>' needs to have dll-interface to be used by clients of class 'pyinstance::PythonInstance' c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\include\xstring(2633): note: see declaration of 'std::basic_string,std::allocator>' c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Molecule.h(37): note: see reference to class template instantiation 'pyinstance::PythonInstance' being compiled c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Molecule.h(46): warning C4251: 'tmpl::Molecule::_atoms': class 'std::set,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule' with [ _Kty=tmpl::Atom *, _Ty=tmpl::Atom * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Molecule.h(41): note: see declaration of 'std::set,std::allocator<_Ty>>' with [ _Kty=tmpl::Atom *, _Ty=tmpl::Atom * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Molecule.h(47): warning C4251: 'tmpl::Molecule::_bonds': class 'std::set,std::allocator<_Ty>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule' with [ _Kty=tmpl::Bond *, _Ty=tmpl::Bond * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Molecule.h(42): note: see declaration of 'std::set,std::allocator<_Ty>>' with [ _Kty=tmpl::Bond *, _Ty=tmpl::Bond * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Molecule.h(48): warning C4251: 'tmpl::Molecule::_coord_sets': class 'std::vector>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule' with [ _Ty=tmpl::CoordSet * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Molecule.h(43): note: see declaration of 'std::vector>' with [ _Ty=tmpl::CoordSet * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Molecule.h(49): warning C4251: 'tmpl::Molecule::_residues': class 'std::map,std::allocator>>' needs to have dll-interface to be used by clients of class 'tmpl::Molecule' with [ _Kty=std::string, _Ty=tmpl::Residue * ] c:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\include\atomstruct\tmpl\Molecule.h(44): note: see declaration of 'std::map,std::allocator>>' with [ _Kty=std::string, _Ty=tmpl::Residue * ] cytmpl.cpp(2025): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning) cytmpl.cpp(2026): warning C4800: 'int': forcing value to bool 'true' or 'false' (performance warning) creating C:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\chimerax creating C:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\chimerax\atomic C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\bin\amd64\link.exe /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:lib /LIBPATH:C:\cygwin64\home\goddard\chimerax\build\lib /LIBPATH:C:\cygwin64\home\goddard\chimerax\build\bin\libs /LIBPATH:C:\cygwin64\home\goddard\chimerax\build\bin\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Windows Kits\NETFXSDK\4.6.1\lib\um\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.16299.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.16299.0\um\x64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\lib\amd64" "/LIBPATH:c:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\atlmfc\lib\amd64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.10586.0\ucrt\x64" "/LIBPATH:c:\Program Files (x86)\Windows Kits\10\lib\10.0.10586.0\um\x64" libatomstruct.lib libelement.lib /EXPORT:PyInit_cytmpl build\temp.win-amd64-3.7\Release\cytmpl.obj /OUT:C:\cygwin64\home\goddard\chimerax\src\bundles\atomic\atomic_cpp\chimerax\atomic\cytmpl.cp37-win_amd64.pyd /IMPLIB:build\temp.win-amd64-3.7\Release\cytmpl.cp37-win_amd64.lib cytmpl.obj : warning LNK4197: export 'PyInit_cytmpl' specified multiple times; using first specification Creating library build\temp.win-amd64-3.7\Release\cytmpl.cp37-win_amd64.lib and object build\temp.win-amd64-3.7\Release\cytmpl.cp37-win_amd64.exp Generating code Finished generating code mv chimerax/atomic/cytmpl.cp*.pyd cytmpl.pyd rmdir -p chimerax/atomic /home/goddard/chimerax/build/bin/rsync.convert -rlptWv libmolc.dll cymol.pyd cymol.pyx cytmpl.pyd cytmpl.pyx data include lib ../src sending incremental file list cymol.pyd cymol.pyx cytmpl.pyd cytmpl.pyx libmolc.dll data/ data/idatm/ data/idatm/templates/ data/idatm/templates/A.idatmres data/idatm/templates/ACE.idatmres data/idatm/templates/ALA.idatmres data/idatm/templates/ARG.idatmres data/idatm/templates/ASN.idatmres data/idatm/templates/ASP.idatmres data/idatm/templates/C.idatmres data/idatm/templates/CYS.idatmres data/idatm/templates/DA.idatmres data/idatm/templates/DC.idatmres data/idatm/templates/DG.idatmres data/idatm/templates/DT.idatmres data/idatm/templates/FORMAT data/idatm/templates/G.idatmres data/idatm/templates/GLN.idatmres data/idatm/templates/GLU.idatmres data/idatm/templates/GLY.idatmres data/idatm/templates/HID.idatmres data/idatm/templates/HIE.idatmres data/idatm/templates/HIP.idatmres data/idatm/templates/HIS.idatmres data/idatm/templates/HOH.idatmres data/idatm/templates/HYP.idatmres data/idatm/templates/ILE.idatmres data/idatm/templates/LEU.idatmres data/idatm/templates/LYS.idatmres data/idatm/templates/MET.idatmres data/idatm/templates/MSE.idatmres data/idatm/templates/PHE.idatmres data/idatm/templates/PRO.idatmres data/idatm/templates/SER.idatmres data/idatm/templates/T.idatmres data/idatm/templates/THR.idatmres data/idatm/templates/TRP.idatmres data/idatm/templates/TYR.idatmres data/idatm/templates/U.idatmres data/idatm/templates/VAL.idatmres include/ include/atomic/ include/atomic/ctypes_pyinst.h include/atomstruct/ include/atomstruct/Atom.h include/atomstruct/AtomicStructure.h include/atomstruct/Bond.h include/atomstruct/Chain.h include/atomstruct/ChangeTracker.h include/atomstruct/Connection.h include/atomstruct/Coord.h include/atomstruct/CoordSet.h include/atomstruct/MolResId.h include/atomstruct/PBGroup.h include/atomstruct/PBManager.h include/atomstruct/Point.h include/atomstruct/Pseudobond.h include/atomstruct/Real.h include/atomstruct/Residue.h include/atomstruct/Rgba.h include/atomstruct/RibbonXSection.h include/atomstruct/Ring.h include/atomstruct/Sequence.h include/atomstruct/Structure.h include/atomstruct/StructureSeq.h include/atomstruct/backbone.h include/atomstruct/destruct.h include/atomstruct/imex.h include/atomstruct/polymer.h include/atomstruct/seq_assoc.h include/atomstruct/session.h include/atomstruct/string_types.h include/atomstruct/tmpl/ include/atomstruct/tmpl/Atom.h include/atomstruct/tmpl/Bond.h include/atomstruct/tmpl/Coord.h include/atomstruct/tmpl/CoordSet.h include/atomstruct/tmpl/Molecule.h include/atomstruct/tmpl/Residue.h include/atomstruct/tmpl/TAexcept.h include/atomstruct/tmpl/TemplateCache.h include/atomstruct/tmpl/resDescrip.h include/atomstruct/tmpl/residues.h include/atomstruct/tmpl/resinternal.h include/atomstruct/tmpl/restmpl.h include/element/ include/element/Element.h include/element/imex.h include/pyinstance/ include/pyinstance/PythonInstance.declare.h include/pyinstance/PythonInstance.instantiate.h include/pyinstance/imex.h include/pyinstance/imex.map.h lib/ lib/libatomstruct.dll lib/libatomstruct.lib lib/libelement.dll lib/libelement.lib lib/libpyinstance.dll lib/libpyinstance.lib sent 3,706,128 bytes received 1,881 bytes 7,416,018.00 bytes/sec total size is 3,698,599 speedup is 1.00 make[2]: Leaving directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp' make[1]: Leaving directory '/home/goddard/chimerax/src/bundles/atomic/atomic_cpp' ../../../ChimeraX.app/bin/ChimeraX.exe --nogui --safemode --exit --cmd "devel install . user false exit true test false" INFO: Executing: devel install . user false exit true test false running build running build_py creating build creating build\lib creating build\lib\chimerax creating build\lib\chimerax\atomic copying src\args.py -> build\lib\chimerax\atomic copying src\attr_registration.py -> build\lib\chimerax\atomic copying src\bond_geom.py -> build\lib\chimerax\atomic copying src\changes.py -> build\lib\chimerax\atomic copying src\colors.py -> build\lib\chimerax\atomic copying src\contextmenu.py -> build\lib\chimerax\atomic copying src\ctypes_support.py -> build\lib\chimerax\atomic copying src\idatm.py -> build\lib\chimerax\atomic copying src\molarray.py -> build\lib\chimerax\atomic copying src\molc.py -> build\lib\chimerax\atomic copying src\molobject.py -> build\lib\chimerax\atomic copying src\molsurf.py -> build\lib\chimerax\atomic copying src\path.py -> build\lib\chimerax\atomic copying src\pbgroup.py -> build\lib\chimerax\atomic copying src\pdbmatrices.py -> build\lib\chimerax\atomic copying src\presets.py -> build\lib\chimerax\atomic copying src\ribbon.py -> build\lib\chimerax\atomic copying src\selectors.py -> build\lib\chimerax\atomic copying src\settings.py -> build\lib\chimerax\atomic copying src\shapedrawing.py -> build\lib\chimerax\atomic copying src\sse.py -> build\lib\chimerax\atomic copying src\structure.py -> build\lib\chimerax\atomic copying src\struct_edit.py -> build\lib\chimerax\atomic copying src\triggers.py -> build\lib\chimerax\atomic copying src\widgets.py -> build\lib\chimerax\atomic copying src\__init__.py -> build\lib\chimerax\atomic creating build\lib\chimerax\atomic\data creating build\lib\chimerax\atomic\data\idatm creating build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\A.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\ACE.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\ALA.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\ARG.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\ASN.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\ASP.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\C.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\CYS.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\DA.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\DC.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\DG.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\DT.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\FORMAT -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\G.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\GLN.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\GLU.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\GLY.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\HID.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\HIE.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\HIP.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\HIS.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\HOH.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\HYP.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\ILE.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\LEU.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\LYS.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\MET.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\MSE.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\PHE.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\PRO.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\SER.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\T.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\THR.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\TRP.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\TYR.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\U.idatmres -> build\lib\chimerax\atomic\data\idatm\templates copying src\data\idatm\templates\VAL.idatmres -> build\lib\chimerax\atomic\data\idatm\templates creating build\lib\chimerax\atomic\include creating build\lib\chimerax\atomic\include\atomic copying src\include\atomic\ctypes_pyinst.h -> build\lib\chimerax\atomic\include\atomic creating build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\Atom.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\AtomicStructure.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\backbone.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\Bond.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\Chain.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\ChangeTracker.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\Connection.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\Coord.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\CoordSet.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\destruct.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\imex.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\MolResId.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\PBGroup.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\PBManager.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\Point.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\polymer.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\Pseudobond.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\Real.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\Residue.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\Rgba.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\RibbonXSection.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\Ring.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\Sequence.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\seq_assoc.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\session.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\string_types.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\Structure.h -> build\lib\chimerax\atomic\include\atomstruct copying src\include\atomstruct\StructureSeq.h -> build\lib\chimerax\atomic\include\atomstruct creating build\lib\chimerax\atomic\include\element copying src\include\element\Element.h -> build\lib\chimerax\atomic\include\element copying src\include\element\imex.h -> build\lib\chimerax\atomic\include\element creating build\lib\chimerax\atomic\include\pyinstance copying src\include\pyinstance\imex.h -> build\lib\chimerax\atomic\include\pyinstance copying src\include\pyinstance\imex.map.h -> build\lib\chimerax\atomic\include\pyinstance copying src\include\pyinstance\PythonInstance.declare.h -> build\lib\chimerax\atomic\include\pyinstance copying src\include\pyinstance\PythonInstance.instantiate.h -> build\lib\chimerax\atomic\include\pyinstance creating build\lib\chimerax\atomic\include\atomstruct\tmpl copying src\include\atomstruct\tmpl\Atom.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl copying src\include\atomstruct\tmpl\Bond.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl copying src\include\atomstruct\tmpl\Coord.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl copying src\include\atomstruct\tmpl\CoordSet.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl copying src\include\atomstruct\tmpl\Molecule.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl copying src\include\atomstruct\tmpl\resDescrip.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl copying src\include\atomstruct\tmpl\Residue.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl copying src\include\atomstruct\tmpl\residues.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl copying src\include\atomstruct\tmpl\resinternal.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl copying src\include\atomstruct\tmpl\restmpl.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl copying src\include\atomstruct\tmpl\TAexcept.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl copying src\include\atomstruct\tmpl\TemplateCache.h -> build\lib\chimerax\atomic\include\atomstruct\tmpl creating build\lib\chimerax\atomic\lib copying src\lib\libatomstruct.dll -> build\lib\chimerax\atomic\lib copying src\lib\libatomstruct.lib -> build\lib\chimerax\atomic\lib copying src\lib\libelement.dll -> build\lib\chimerax\atomic\lib copying src\lib\libelement.lib -> build\lib\chimerax\atomic\lib copying src\lib\libpyinstance.dll -> build\lib\chimerax\atomic\lib copying src\lib\libpyinstance.lib -> build\lib\chimerax\atomic\lib copying src\cymol.pyd -> build\lib\chimerax\atomic copying src\cymol.pyx -> build\lib\chimerax\atomic copying src\cytmpl.pyd -> build\lib\chimerax\atomic copying src\cytmpl.pyx -> build\lib\chimerax\atomic copying src\libmolc.dll -> build\lib\chimerax\atomic running build_ext running bdist_wheel installing to build\bdist.win-amd64\wheel running install running install_lib running build_ext creating build\bdist.win-amd64 creating build\bdist.win-amd64\wheel creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\args.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\attr_registration.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\bond_geom.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\changes.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\colors.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\contextmenu.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\ctypes_support.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\cymol.pyd -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\cymol.pyx -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\cytmpl.pyd -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\cytmpl.pyx -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\A.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\ACE.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\ALA.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\ARG.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\ASN.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\ASP.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\C.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\CYS.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\DA.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\DC.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\DG.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\DT.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\FORMAT -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\G.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\GLN.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\GLU.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\GLY.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\HID.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\HIE.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\HIP.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\HIS.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\HOH.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\HYP.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\ILE.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\LEU.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\LYS.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\MET.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\MSE.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\PHE.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\PRO.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\SER.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\T.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\THR.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\TRP.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\TYR.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\U.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\data\idatm\templates\VAL.idatmres -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\data\idatm\templates copying build\lib\chimerax\atomic\idatm.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomic copying build\lib\chimerax\atomic\include\atomic\ctypes_pyinst.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomic creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\Atom.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\AtomicStructure.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\backbone.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\Bond.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\Chain.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\ChangeTracker.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\Connection.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\Coord.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\CoordSet.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\destruct.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\imex.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\MolResId.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\PBGroup.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\PBManager.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\Point.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\polymer.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\Pseudobond.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\Real.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\Residue.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\Rgba.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\RibbonXSection.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\Ring.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\Sequence.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\seq_assoc.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\session.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\string_types.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\Structure.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct copying build\lib\chimerax\atomic\include\atomstruct\StructureSeq.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl copying build\lib\chimerax\atomic\include\atomstruct\tmpl\Atom.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl copying build\lib\chimerax\atomic\include\atomstruct\tmpl\Bond.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl copying build\lib\chimerax\atomic\include\atomstruct\tmpl\Coord.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl copying build\lib\chimerax\atomic\include\atomstruct\tmpl\CoordSet.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl copying build\lib\chimerax\atomic\include\atomstruct\tmpl\Molecule.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl copying build\lib\chimerax\atomic\include\atomstruct\tmpl\resDescrip.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl copying build\lib\chimerax\atomic\include\atomstruct\tmpl\Residue.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl copying build\lib\chimerax\atomic\include\atomstruct\tmpl\residues.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl copying build\lib\chimerax\atomic\include\atomstruct\tmpl\resinternal.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl copying build\lib\chimerax\atomic\include\atomstruct\tmpl\restmpl.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl copying build\lib\chimerax\atomic\include\atomstruct\tmpl\TAexcept.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl copying build\lib\chimerax\atomic\include\atomstruct\tmpl\TemplateCache.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\atomstruct\tmpl creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\element copying build\lib\chimerax\atomic\include\element\Element.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\element copying build\lib\chimerax\atomic\include\element\imex.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\element creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\pyinstance copying build\lib\chimerax\atomic\include\pyinstance\imex.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\pyinstance copying build\lib\chimerax\atomic\include\pyinstance\imex.map.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\pyinstance copying build\lib\chimerax\atomic\include\pyinstance\PythonInstance.declare.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\pyinstance copying build\lib\chimerax\atomic\include\pyinstance\PythonInstance.instantiate.h -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\include\pyinstance creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\lib copying build\lib\chimerax\atomic\lib\libatomstruct.dll -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\lib copying build\lib\chimerax\atomic\lib\libatomstruct.lib -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\lib copying build\lib\chimerax\atomic\lib\libelement.dll -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\lib copying build\lib\chimerax\atomic\lib\libelement.lib -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\lib copying build\lib\chimerax\atomic\lib\libpyinstance.dll -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\lib copying build\lib\chimerax\atomic\lib\libpyinstance.lib -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic\lib copying build\lib\chimerax\atomic\libmolc.dll -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\molarray.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\molc.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\molobject.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\molsurf.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\path.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\pbgroup.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\pdbmatrices.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\presets.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\ribbon.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\selectors.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\settings.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\shapedrawing.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\sse.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\structure.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\struct_edit.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\triggers.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\widgets.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic copying build\lib\chimerax\atomic\__init__.py -> build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\chimerax\atomic running install_egg_info running egg_info creating ChimeraX_Atomic.egg-info writing ChimeraX_Atomic.egg-info\PKG-INFO writing dependency_links to ChimeraX_Atomic.egg-info\dependency_links.txt writing requirements to ChimeraX_Atomic.egg-info\requires.txt writing top-level names to ChimeraX_Atomic.egg-info\top_level.txt writing manifest file 'ChimeraX_Atomic.egg-info\SOURCES.txt' reading manifest file 'ChimeraX_Atomic.egg-info\SOURCES.txt' writing manifest file 'ChimeraX_Atomic.egg-info\SOURCES.txt' Copying ChimeraX_Atomic.egg-info to build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.data\purelib\ChimeraX_Atomic-1.0-py3.7.egg-info running install_scripts creating build\bdist.win-amd64\wheel\ChimeraX_Atomic-1.0.dist-info\WHEEL creating 'dist\ChimeraX_Atomic-1.0-cp37-cp37m-win_amd64.whl' and adding 'build\bdist.win-amd64\wheel' to it adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/__init__.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/args.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/attr_registration.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/bond_geom.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/changes.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/colors.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/contextmenu.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/ctypes_support.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/cymol.pyd' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/cymol.pyx' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/cytmpl.pyd' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/cytmpl.pyx' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/idatm.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/libmolc.dll' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/molarray.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/molc.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/molobject.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/molsurf.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/path.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/pbgroup.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/pdbmatrices.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/presets.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/ribbon.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/selectors.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/settings.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/shapedrawing.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/sse.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/struct_edit.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/structure.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/triggers.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/widgets.py' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/A.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/ACE.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/ALA.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/ARG.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/ASN.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/ASP.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/C.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/CYS.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/DA.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/DC.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/DG.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/DT.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/FORMAT' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/G.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/GLN.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/GLU.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/GLY.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/HID.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/HIE.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/HIP.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/HIS.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/HOH.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/HYP.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/ILE.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/LEU.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/LYS.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/MET.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/MSE.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/PHE.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/PRO.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/SER.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/T.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/THR.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/TRP.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/TYR.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/U.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/data/idatm/templates/VAL.idatmres' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomic/ctypes_pyinst.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Atom.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/AtomicStructure.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Bond.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Chain.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/ChangeTracker.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Connection.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Coord.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/CoordSet.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/MolResId.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/PBGroup.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/PBManager.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Point.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Pseudobond.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Real.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Residue.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Rgba.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/RibbonXSection.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Ring.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Sequence.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/Structure.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/StructureSeq.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/backbone.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/destruct.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/imex.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/polymer.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/seq_assoc.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/session.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/string_types.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/Atom.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/Bond.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/Coord.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/CoordSet.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/Molecule.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/Residue.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/TAexcept.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/TemplateCache.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/resDescrip.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/residues.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/resinternal.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/atomstruct/tmpl/restmpl.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/element/Element.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/element/imex.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/pyinstance/PythonInstance.declare.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/pyinstance/PythonInstance.instantiate.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/pyinstance/imex.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/include/pyinstance/imex.map.h' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/lib/libatomstruct.dll' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/lib/libatomstruct.lib' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/lib/libelement.dll' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/lib/libelement.lib' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/lib/libpyinstance.dll' adding 'ChimeraX_Atomic-1.0.data/purelib/chimerax/atomic/lib/libpyinstance.lib' adding 'ChimeraX_Atomic-1.0.dist-info/METADATA' adding 'ChimeraX_Atomic-1.0.dist-info/WHEEL' adding 'ChimeraX_Atomic-1.0.dist-info/top_level.txt' adding 'ChimeraX_Atomic-1.0.dist-info/RECORD' removing build\bdist.win-amd64\wheel Distribution is in .\dist\ChimeraX_Atomic-1.0-cp37-cp37m-win_amd64.whl INFO: Executing: toolshed install ".\\dist\\ChimeraX_Atomic-1.0-cp37-cp37m-win_amd64.whl" userOnly false Successfully installed ChimeraX-Atomic-1.0 Installed ChimeraX-Atomic (1.0) 0.00% done: Initializing core 50.00% done: Initializing bundles $