Timeline



Oct 4, 2025:

7:13 PM Ticket #19033 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…
[…]
6:53 PM Ticket #19032 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…
[…]
3:52 PM Ticket #19031 (Crash after opening 12 sequences) created by chimerax-bug-report@…
[…]
6:23 AM Ticket #19030 (File history unreadable) created by 070.arungs@…
[…]
3:36 AM Ticket #19029 (ArtiaX: SuperQt slider tick interval: 'float' object cannot be ...) created by chimerax-bug-report@…
[…]
2:50 AM Ticket #19028 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
1:40 AM Ticket #19027 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…
[…]
12:29 AM Ticket #19026 (Session restore: invalid load key) created by chimerax-bug-report@…
[…]

Oct 3, 2025:

10:31 PM Ticket #19025 (Crash drawing graphics after resize) created by chimerax-bug-report@…
[…]
6:53 PM Ticket #19024 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
4:25 PM Ticket #19023 (ffmpeg: Permission Denied) created by chimerax-bug-report@…
[…]
3:06 PM Ticket #19022 (ffmpeg: Permission Denied) created by chimerax-bug-report@…
[…]
9:33 AM Ticket #19021 (Didn't find section 'Peptide bond' in tab 'ISOLDE') created by chimerax-bug-report@…
[…]
7:40 AM Ticket #19020 (Various ViewDockX errors) created by chimerax-bug-report@…
[…]
7:25 AM Ticket #19019 (Bad DCD file) created by chimerax-bug-report@…
[…]
7:24 AM Ticket #19018 (Bad DCD file) created by chimerax-bug-report@…
[…]
6:16 AM Ticket #19017 (isolde sim start: OpenMMException: Error compiling kernel) created by chimerax-bug-report@…
[…]
5:20 AM Ticket #19016 (Scalebar: invalid literal for int() with base 10) created by chimerax-bug-report@…
[…]
12:21 AM Ticket #19015 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]

Oct 2, 2025:

9:36 PM Ticket #19014 (Crash gathering Linux info for bug reporter) created by neha@…
[…]
2:22 PM Ticket #9387 (ESPALOMA-based parameter estimation) closed by pett
fixed: Minimization has been implemented via Antechamber+OpenMM rather than …
12:07 PM 2025-10-2 edited by Tom Goddard
(diff)
11:59 AM Dev2025-10-6 edited by Tom Goddard
(diff)
11:59 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:04 AM Ticket #19011 ('NoneType' object has no attribute 'image_colors') closed by Zach Pearson
duplicate: Use the daily build.
10:02 AM Ticket #19007 (Crash during Boltz prediction) closed by Tom Goddard
nonchimerax: This ChimeraX crash was probably caused by graphics driver problems. …
9:58 AM Ticket #19006 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: This ChimeraX crash is caused by a bug in the Qt window toolkit that …
8:46 AM Ticket #19012 (Crash moving between screens) closed by pett
duplicate
8:43 AM Ticket #19010 (ffmpeg: Permission denied) closed by pett
duplicate: Hi Sean, Thanks for reporting this problem. It is fixed in the …
8:39 AM Ticket #19009 (Crash showing main graphics window) closed by pett
limitation: version 1.4; remote display
8:37 AM Ticket #19008 (Unknown crash) closed by pett
can't reproduce
6:02 AM Ticket #19013 (HtmlView: session and view must be set) created by chimerax-bug-report@…
[…]
5:47 AM Ticket #19012 (Crash moving between screens) created by chimerax-bug-report@…
[…]
5:05 AM Ticket #19011 ('NoneType' object has no attribute 'image_colors') created by chimerax-bug-report@…
[…]
4:11 AM Ticket #19010 (ffmpeg: Permission denied) created by sean@…
[…]
1:12 AM Ticket #19009 (Crash showing main graphics window) created by chimerax-bug-report@…
[…]

Oct 1, 2025:

5:30 PM Ticket #19008 (Unknown crash) created by chimerax-bug-report@…
[…]
3:42 PM Ticket #18601 (Chimera Not Using Graphics Card) closed by Greg Couch
nonchimerax
3:31 PM Ticket #19007 (Crash during Boltz prediction) created by jszot@…
[…]
12:53 PM ChangeLog edited by Elaine Meng
(diff)
11:47 AM ChangeLog edited by pett
(diff)
11:47 AM ChangeLog edited by pett
(diff)
10:40 AM Ticket #19005 (GPU failure after large image save) closed by Tom Goddard
nonchimerax: Lots of problems with an external display and GPU. The GPU is an …
10:37 AM Ticket #19006 (Crash on Mac waking from sleep) created by gotla.suhas@…
[…]
9:34 AM Ticket #19005 (GPU failure after large image save) created by chimerax-bug-report@…
[…]
9:30 AM Ticket #19004 (Crash on exit) closed by pett
duplicate: From before the crash-on-exit workaround went in.
9:17 AM Ticket #19002 ('CategorizedOptionsPanel' object has no attribute 'currentIndex') closed by pett
duplicate: Duplicate of #18731
9:05 AM Ticket #19001 (Crash on Mac waking from sleep) closed by pett
duplicate
7:06 AM Ticket #19004 (Crash on exit) created by chimerax-bug-report@…
[…]
5:47 AM Ticket #19003 (isolde sim start: OpenMMException: Error compiling kernel) created by ash@…
[…]
5:19 AM Ticket #19002 ('CategorizedOptionsPanel' object has no attribute 'currentIndex') created by chimerax-bug-report@…
[…]
3:20 AM Ticket #19001 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Sep 30, 2025:

6:07 PM Ticket #18992 (Re-saving flipped map → empty file) closed by Tom Goddard
fixed: Fixed. There was already code to avoid overwriting a volume file with …
3:49 PM Ticket #18864 (Text shown as question marks on MacOS Tahoe) closed by Tom Goddard
nonchimerax: Glad that fixed it.
1:42 PM Ticket #18712 ('BlobOutlineBox' object has no attribute 'data') closed by Zach Pearson
fixed: As of tomorrow's daily build, BlobOutlineBoxes are no longer …
1:10 PM Ticket #19000 (Inadequate OpenGL) closed by pett
limitation
1:08 PM Ticket #18999 (Crash creating sequence viewer for FASTA file) closed by pett
can't reproduce
1:06 PM Ticket #18998 (Crash in graphics driver during Qt drawing) closed by pett
can't reproduce
12:05 PM Ticket #18996 (Crash creating QWebEngineProfile) closed by pett
can't reproduce
12:03 PM Ticket #18995 (Crash moving window between screens) closed by pett
duplicate
11:36 AM Dev2025-10-6 created by Tom Goddard
11:35 AM Dev2025-9-29 edited by Tom Goddard
(diff)
11:35 AM 2025-10-2 created by Tom Goddard
11:34 AM 2025-9-25 edited by Tom Goddard
(diff)
11:34 AM 2025-9-25 edited by Tom Goddard
(diff)
11:31 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:07 AM Ticket #18988 ('DicomGrid' object has no attribute 'reference_data') closed by Zach Pearson
can't reproduce: User probably tried opening a DICOM file that has no image data. There …
11:01 AM Ticket #18993 (Crash in event loop) closed by pett
can't reproduce
10:57 AM Ticket #18991 (ffmpeg: Permission denied) closed by pett
duplicate
10:55 AM Ticket #18990 (Crash calling some object's finalizer) closed by pett
can't reproduce
10:48 AM Ticket #17721 (DICOM: Cancer Imaging Archive timeout) closed by Zach Pearson
nonchimerax: We can't control TCIA's availability, but it would be good to catch …
10:47 AM Ticket #18079 (Setting 'display' attribute of closed segmentation cursor) closed by Zach Pearson
fixed: This ticket should be fixed by the same fix from #18556 and others. …
10:41 AM Ticket #18895 (Render By Attribute menu ownership) closed by pett
duplicate: Duplicate of #18610
10:04 AM Ticket #18894 (Crash using open/save dialog) closed by pett
can't reproduce
9:56 AM Ticket #18893 (Crash closing tool with in-window status bar with PySide 6.9.2) closed by pett
duplicate: Duplicate of #18630
9:55 AM Ticket #18892 (Crash closing tool with in-window status bar with PySide 6.9.2) closed by pett
duplicate: Duplicate of #18630
9:54 AM Ticket #18891 (Crash closing tool with in-window status bar with PySide 6.9.2) closed by pett
duplicate: Duplicate of #18630
9:49 AM Ticket #18890 (Crash in event loop) closed by pett
can't reproduce
9:43 AM Ticket #18889 (Crash in garbage collection) closed by pett
duplicate
9:42 AM Ticket #18888 ('pip install pyKVFinder' fails with empty error message) closed by pett
duplicate: Still waiting for this to be reported in the daily build.
8:58 AM Ticket #19000 (Inadequate OpenGL) created by chimerax-bug-report@…
[…]
4:38 AM Ticket #18999 (Crash creating sequence viewer for FASTA file) created by chimerax-bug-report@…
[…]
12:05 AM Ticket #18998 (Crash in graphics driver during Qt drawing) created by chimerax-bug-report@…
[…]

Sep 29, 2025:

7:25 PM Dev2025-9-29 edited by Tom Goddard
(diff)
7:17 PM DeveloperMeetings edited by Tom Goddard
(diff)
6:05 PM Ticket #18997 (QScore: scores is None) created by chimerax-bug-report@…
[…]
6:05 PM Ticket #18996 (Crash creating QWebEngineProfile) created by chimerax-bug-report@…
[…]
6:05 PM Ticket #18995 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
6:05 PM Ticket #18994 (Alignment observer not in list) created by chimerax-bug-report@…
[…]
6:05 PM Ticket #18993 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:05 PM Ticket #18992 (Re-saving flipped map → empty file) created by Tristan Croll
[…]
6:05 PM Ticket #18991 (ffmpeg: Permission denied) created by chimerax-bug-report@…
[…]
6:05 PM Ticket #18990 (Crash calling some object's finalizer) created by chimerax-bug-report@…
[…]
6:05 PM Ticket #18989 (glClear: invalid framebuffer operation) created by cindy@…
[…]
6:05 PM Ticket #18988 ('DicomGrid' object has no attribute 'reference_data') created by chimerax-bug-report@…
[…]

Sep 27, 2025:

5:10 PM Ticket #18895 (Render By Attribute menu ownership) created by chimerax-bug-report@…
[…]
1:03 PM Ticket #18894 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
12:29 PM Ticket #18893 (Crash closing tool with in-window status bar with PySide 6.9.2) created by chimerax-bug-report@…
[…]
7:45 AM Ticket #18892 (Crash closing tool with in-window status bar with PySide 6.9.2) created by chimerax-bug-report@…
[…]
4:01 AM Ticket #18891 (Crash closing tool with in-window status bar with PySide 6.9.2) created by chimerax-bug-report@…
[…]
3:56 AM Ticket #18890 (Crash in event loop) created by chimerax-bug-report@…
[…]
2:56 AM Ticket #18889 (Crash in garbage collection) created by chimerax-bug-report@…
[…]

Sep 26, 2025:

8:33 PM Ticket #18888 ('pip install pyKVFinder' fails with empty error message) created by chimerax-bug-report@…
[…]
7:25 PM Ticket #18887 (Crash in event loop) created by arshadkhanbaloch214@…
[…]
3:26 PM Ticket #18668 ('NoneType' object has no attribute 'image_colors') closed by Zach Pearson
fixed
3:24 PM Ticket #18753 (Closing segmentation cursors: self._positions is None) closed by Zach Pearson
fixed: If you accidentally close a segmentation cursor, but the tool is open …
2:54 PM Ticket #18760 ('MRCGrid' object has no attribute 'dicom_data') closed by Zach Pearson
fixed: Use 1.10.1
2:54 PM Ticket #18781 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') closed by Zach Pearson
duplicate: Same resolution as #18854.
2:53 PM Ticket #18854 (Orthoplanes: self.view.drawing.parent is None) closed by Zach Pearson
fixed: I have added a test for None in the offending function.
2:06 PM Ticket #18885 (ffmpeg permission error) closed by Tom Goddard
duplicate
1:58 PM Ticket #18886 (Associated structure with profile grid sequence is slow) created by goddard@…
[…] paired.fasta
12:37 PM Ticket #18885 (ffmpeg permission error) created by najeebullah09201@…
[…] chimerax 1.10 bug 20250926.docx
9:45 AM Ticket #18884 (Crash on Mac waking from sleep) closed by pett
duplicate
9:45 AM Ticket #18883 (Cannot capture thumbnail: inadequate OpenGL) closed by pett
limitation
9:43 AM Ticket #18882 (Crash on Mac waking from sleep) closed by pett
duplicate
9:42 AM Ticket #18881 (Crash in garbage collection) closed by pett
duplicate
7:07 AM Ticket #18884 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
5:51 AM Ticket #18883 (Cannot capture thumbnail: inadequate OpenGL) created by chimerax-bug-report@…
[…]
3:57 AM Ticket #18882 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
1:09 AM Ticket #18881 (Crash in garbage collection) created by chimerax-bug-report@…
[…]

Sep 25, 2025:

5:48 PM Ticket #18870 (Crash at startup) closed by Greg Couch
nonchimerax: Try running ChimeraX directly on your computer instead of remotely on …
4:42 PM Ticket #18880 (Crash closing tool with in-window status bar with PySide 6.9.2) closed by pett
duplicate: Duplicate of #18630
4:26 PM Ticket #18877 ('MRCGrid' object has no attribute 'dicom_data') closed by pett
duplicate
4:25 PM Ticket #18876 ('MRCGrid' object has no attribute 'dicom_data') closed by pett
duplicate
1:53 PM Ticket #18880 (Crash closing tool with in-window status bar with PySide 6.9.2) created by chimerax-bug-report@…
[…]
1:40 PM Ticket #18879 (Scenes tool: using Delete leaves name filled in and Update button) created by Elaine Meng
should clear name and change Update to Save because when you delete …
1:34 PM Ticket #18878 (Somehow model.overall_color is being saved/restored) created by Elaine Meng
[…]
1:25 PM Ticket #18874 (Crash in swap_buffers) closed by Tom Goddard
can't reproduce: A lot going on in the crash stack trace. It appears a display was …
12:49 PM Ticket #18877 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
12:37 PM Ticket #18876 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
10:58 AM Ticket #18875 (Scenes involving deleted atoms needs better error handling) created by Elaine Meng
[…]
10:50 AM Ticket #18873 ('MRCGrid' object has no attribute 'dicom_data') closed by pett
duplicate
10:45 AM Ticket #18874 (Crash in swap_buffers) created by chimerax-bug-report@…
[…]
10:28 AM Ticket #18871 (Crash at startup) closed by pett
duplicate: Duplicate of #18870
10:25 AM Ticket #18851 (OpenMM compiler failure on Windows) closed by pett
duplicate: Continued in
10:21 AM Ticket #18868 (Crash in python_instances_of_class) closed by pett
duplicate
10:20 AM Ticket #18867 (Crash in event loop) closed by pett
can't reproduce: Crash in QAccessible-related code, so some similarity to the other …
10:15 AM Ticket #18866 (Crash in event loop) closed by pett
can't reproduce
8:30 AM Ticket #18873 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
7:37 AM Ticket #18872 (File→Open "copy location" does not paste into command line on Ubuntu) created by Tristan Croll
[…]
4:02 AM Ticket #18871 (Crash at startup) created by neha@…
[…]
3:03 AM Ticket #18870 (Crash at startup) created by neha@…
[…]

Sep 24, 2025:

10:12 PM Ticket #18869 (OpenMM compiler failure on Windows) created by cwa5555@…
[…] 10mer_2.pdb
6:32 PM Ticket #18868 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
6:14 PM Ticket #18867 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:11 PM Ticket #18866 (Crash in event loop) created by chimerax-bug-report@…
[…]
1:04 PM Ticket #18865 (Add option to fetch emdb map when opening a PDB structure) closed by Tom Goddard
fixed: Done. Example open 7pkz fetchEmdbMap true I added an option …
12:35 PM Ticket #18865 (Add option to fetch emdb map when opening a PDB structure) created by Samuel.Haysom@…
Begin forwarded message: From: Samuel Haysom via ChimeraX-users …
10:57 AM Ticket #18864 (Text shown as question marks on MacOS Tahoe) created by gunnar@…
[…] Screen shot.pdf
10:51 AM Ticket #18863 (Number_Entry widget: could not convert string to float: '') closed by Tom Goddard
fixed: Fixed. Needed to change the scalebar code which was looking for a …
10:43 AM Ticket #18859 (Crash drawing Side View) closed by Tom Goddard
nonchimerax
9:21 AM Ticket #18863 (Number_Entry widget: could not convert string to float: '') created by chimerax-bug-report@…
[…]
9:06 AM Ticket #18862 (Molecular Dynamics Viewer: list index out of range) closed by pett
limitation: Hi Abdul, The Molecular Dynamics viewer does not work with a series …
8:44 AM Ticket #18861 (MemoryError opening mmCIF files) closed by pett
duplicate
8:44 AM Ticket #18860 (Crash destroying tool window) closed by pett
can't reproduce
8:40 AM Ticket #18858 (Crash on Mac waking from sleep) closed by pett
duplicate
8:37 AM Ticket #18857 (Crash on Mac waking from sleep) closed by pett
duplicate
8:36 AM Ticket #18856 (ffmpeg: Permission denied) closed by pett
duplicate
8:34 AM Ticket #18855 (Crash on Mac waking from sleep) closed by pett
duplicate
7:33 AM Ticket #18862 (Molecular Dynamics Viewer: list index out of range) created by abdul.samad@…
[…]
6:23 AM Ticket #18861 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
4:30 AM Ticket #18860 (Crash destroying tool window) created by chimerax-bug-report@…
[…]

Sep 23, 2025:

8:51 PM Ticket #18859 (Crash drawing Side View) created by chimerax-bug-report@…
[…]
7:42 PM Ticket #18858 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
6:05 PM Ticket #18857 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
3:01 PM Ticket #18856 (ffmpeg: Permission denied) created by chimerax-bug-report@…
[…]
2:23 PM Ticket #18855 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
2:12 PM Ticket #18854 (Orthoplanes: self.view.drawing.parent is None) created by chimerax-bug-report@…
[…]
1:23 PM Ticket #18852 (Boltz install fails on Windows because git is not available) closed by Tom Goddard
fixed: Fixed in Sept 24, 2025 daily build. Can pip install from github using …
12:57 PM Ticket #18853 (Windows build from scratch has become very slow) created by Tom Goddard
I just made a ChimeraX build on Windows on vizvault.cgl.ucsf.edu and …
11:18 AM Ticket #18850 (Error downloading Boltz parameters) closed by Tom Goddard
nonchimerax: This error means Boltz installation failed to get the chemical …
11:12 AM Ticket #18852 (Boltz install fails on Windows because git is not available) created by goddard@…
[…]
10:34 AM Ticket #18847 (Crash during Boltz prediction) closed by Tom Goddard
nonchimerax: The Log shows the following error before ChimeraX crashed Invalid …
10:22 AM Dev2025-9-29 created by Tom Goddard
10:22 AM 2025-9-25 created by Tom Goddard
10:21 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:29 AM Ticket #18844 (OpenMM compiler failure on Windows) closed by pett
duplicate: Duplicate of #18851, but that ticket has the input file attached.
9:21 AM Ticket #18849 (ffmpeg: Permission denied) closed by pett
duplicate
9:17 AM Ticket #18848 (Crash on Mac waking from sleep) closed by pett
duplicate
9:11 AM Ticket #18846 (Crash in event loop) closed by pett
can't reproduce: Possibly while using Render By Attribute
9:08 AM Ticket #18845 (Crash installing pyKVFinder from PyPi) closed by pett
can't reproduce
7:51 AM Ticket #18851 (OpenMM compiler failure on Windows) created by cwa5555@…
[…] 10mer_2.pdb
6:28 AM Ticket #18850 (Error downloading Boltz parameters) created by lvwei.aca@…
[…]
12:50 AM Ticket #18849 (ffmpeg: Permission denied) created by chimerax-bug-report@…
[…]
12:43 AM Ticket #18848 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
12:27 AM Ticket #18847 (Crash during Boltz prediction) created by petr@…
[…]

Sep 22, 2025:

5:56 PM Ticket #18846 (Crash in event loop) created by chimerax-bug-report@…
[…]
5:28 PM Ticket #18845 (Crash installing pyKVFinder from PyPi) created by chimerax-bug-report@…
[…]
5:26 PM Dev2025-9-22 edited by Tom Goddard
(diff)
4:17 PM Ticket #18844 (OpenMM compiler failure on Windows) created by cwa5555@…
[…]
3:02 PM Dev2025-9-22 edited by Tom Goddard
(diff)
11:32 AM Ticket #18834 (Qt crash calling observer when giving a window keyboard focus) closed by Tom Goddard
can't reproduce: No Log so hard to know what the user was doing.
11:27 AM Ticket #18832 (ArrayMemoryError hiding atoms) closed by Tom Goddard
limitation: Opened 480,000 atom 7pkz rat liver vault structure and showed …
11:17 AM Ticket #18843 (Molecular Dynamics Viewer: list index out of range) closed by pett
limitation
11:15 AM Ticket #18842 (Crash in event loop) closed by pett
can't reproduce: YA allocation/deallocation crash
11:12 AM Ticket #18841 (Crash getting missing-structure pseudobonds while deleting atoms) closed by pett
can't reproduce
11:05 AM Ticket #18840 (Can't save session because NewerVersionQuery not listed) closed by pett
duplicate
10:57 AM Ticket #18839 (MemoryError opening mmCIF files) closed by pett
duplicate
10:56 AM Ticket #18838 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by pett
duplicate: Duplicate of #18238
10:43 AM Ticket #18837 (Crash in event loop) closed by pett
can't reproduce: Again some kind of memory allocation/deallocation problem
10:42 AM Ticket #18836 (Crash using save dialog) closed by pett
can't reproduce: Some kind of memory allocation/deallocation problem while save dialog …
10:37 AM Ticket #18835 (Vina output in ViewDock: KeyError: 'RMSD l.b.') closed by pett
duplicate: Duplicate of #18804
10:26 AM Ticket #18833 (ffmpeg: Permission Denied) closed by pett
duplicate
10:24 AM Ticket #18831 (AddH: more than 2 coplanar positions specified) closed by pett
not a bug
10:23 AM Ticket #18830 (Alignment headers somehow being directly saved in sessions) closed by pett
duplicate: Duplicate of
10:18 AM Ticket #18829 (Crash in event loop) closed by pett
can't reproduce: Looks like some kind of memory allocation/deallocation problem.
10:15 AM Ticket #18828 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by pett
duplicate: Duplicate of #18238
9:04 AM Ticket #18843 (Molecular Dynamics Viewer: list index out of range) created by chimerax-bug-report@…
[…]
5:07 AM Ticket #18842 (Crash in event loop) created by chimerax-bug-report@…
[…]
4:40 AM Ticket #18841 (Crash getting missing-structure pseudobonds while deleting atoms) created by chimerax-bug-report@…
[…]
3:49 AM Ticket #18840 (Can't save session because NewerVersionQuery not listed) created by chimerax-bug-report@…
[…]

Sep 21, 2025:

10:44 PM Ticket #18839 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
9:27 PM Ticket #18838 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…
[…]
9:13 PM Ticket #18837 (Crash in event loop) created by chimerax-bug-report@…
[…]
5:52 PM Ticket #18836 (Crash using save dialog) created by chimerax-bug-report@…
[…]
6:32 AM Ticket #18835 (Vina output in ViewDock: KeyError: 'RMSD l.b.') created by chimerax-bug-report@…
[…]

Sep 20, 2025:

8:08 AM Ticket #18834 (Qt crash calling observer when giving a window keyboard focus) created by chimerax-bug-report@…
[…]
7:49 AM Ticket #18833 (ffmpeg: Permission Denied) created by chimerax-bug-report@…
[…]
2:37 AM Ticket #18832 (ArrayMemoryError hiding atoms) created by chimerax-bug-report@…
[…]

Sep 19, 2025:

10:27 PM Ticket #18831 (AddH: more than 2 coplanar positions specified) created by chimerax-bug-report@…
[…]
8:28 PM Ticket #18830 (Alignment headers somehow being directly saved in sessions) created by chimerax-bug-report@…
[…]
8:27 PM Ticket #18829 (Crash in event loop) created by chimerax-bug-report@…
[…]
8:22 PM Ticket #18828 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…
[…]
6:12 PM Ticket #18827 (Allow alphafold dimers command to restrict to nearby sequences) closed by Tom Goddard
fixed: Done. Added maxSpacing option. It applies to all output formats …
6:11 PM Ticket #18827 (Allow alphafold dimers command to restrict to nearby sequences) created by Tom Goddard
It is sometimes useful to restrict predictions of dimers to sequences …
5:53 PM Ticket #18826 (Make alphafold dimers and monomers commands write Boltz yaml input files) closed by Tom Goddard
fixed: Done. I added an outputYaml option (default false) and an …
5:46 PM Ticket #18826 (Make alphafold dimers and monomers commands write Boltz yaml input files) created by Tom Goddard
The alphafold dimers and monomers commands currently can write out …
4:28 PM Ticket #18825 (Crash opening .cif file) created by thien@…
[…]
12:54 PM Ticket #18824 (Capture file-history thumbnail: 'NoneType' object is not subscriptable) closed by Tom Goddard
nonchimerax
12:54 PM Ticket #18824 (Capture file-history thumbnail: 'NoneType' object is not subscriptable) reopened by Tom Goddard
12:54 PM Ticket #18824 (Capture file-history thumbnail: 'NoneType' object is not subscriptable) closed by Tom Goddard
not a bug: Computer did not have OpenGL 3.3 support as it said at the beginning …
12:51 PM Ticket #18822 (Crash creating QWebEngineProfile) closed by Tom Goddard
can't reproduce: Seems like a Qt bug.
9:10 AM Ticket #18824 (Capture file-history thumbnail: 'NoneType' object is not subscriptable) created by chimerax-bug-report@…
[…]
9:00 AM Ticket #18821 (Crash in event loop) closed by pett
can't reproduce
8:51 AM Ticket #18820 (session.warning should be session.logger.warning) closed by pett
fixed
8:16 AM Ticket #18823 (SEQCROW: reading ORCA output: could not convert string to float: 'DampErr') created by chimerax-bug-report@…
[…]

Sep 18, 2025:

9:22 PM Ticket #18822 (Crash creating QWebEngineProfile) created by chimerax-bug-report@…
[…]
8:10 PM Ticket #18821 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:02 PM Ticket #18820 (session.warning should be session.logger.warning) created by chimerax-bug-report@…
[…]
5:33 PM Ticket #18815 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
5:17 PM Ticket #18819 (Improve Mac crash dump formatting of stack trace) created by Tom Goddard
The Mac crash dumps are hard to read in Trac because the "threads" key …
3:19 PM Ticket #18804 (Vina output in ViewDock: KeyError: 'RMSD l.b.') closed by pett
fixed: Hi Kathe, Thanks for reporting this problem. I have committed a fix, …
3:18 PM Ticket #18809 (Various DLL load failures) closed by Greg Couch
can't reproduce: Looks like a corrupt installation.
2:32 PM Ticket #18818 (Graphics hardware encountered an error and was reset) closed by pett
duplicate
2:20 PM 2025-9-19 edited by Tom Goddard
(diff)
2:11 PM Ticket #18177 (ffmpeg permission denied, Mac, ChimeraX 1.10) closed by Zach Pearson
fixed: Use 1.10.1
2:10 PM Ticket #18709 (ffmpeg: Permission Denied) closed by Zach Pearson
duplicate
2:06 PM Ticket #18799 (ffmpeg: Permission denied) closed by Zach Pearson
duplicate: Use 1.10.1
12:13 PM Ticket #18818 (Graphics hardware encountered an error and was reset) created by chimerax-bug-report@…
[…]
11:46 AM Ticket #18817 (Resize Ramachandran plot: 'box_aspect' and 'fig_aspect' must be positive) created by chimerax-bug-report@…
[…]
10:55 AM Ticket #18816 (SEQCROW: 'ArtistList' object has no attribute 'remove') closed by pett
duplicate: Duplicate of #17581
10:51 AM Ticket #18814 (Crash on Mac waking from sleep) closed by pett
duplicate
10:49 AM Ticket #18813 (ffmpeg: Permission Denied) closed by pett
duplicate
10:48 AM Ticket #18812 (Crash on Mac waking from sleep) closed by pett
duplicate
10:47 AM Ticket #18811 (Crash on Mac in OpenGL driver) closed by pett
duplicate
10:41 AM Ticket #18808 (Various sequence-viewer errors) closed by pett
can't reproduce: Pretty good chance they've already been fixed
10:38 AM Ticket #18807 (Crash in event loop) closed by pett
can't reproduce: From the traceback it seems the crash occurred while starting the GUI, …
10:33 AM Ticket #18806 (ISOLDE Ramachandran Plot: UnboundLocalError: cannot access local ...) closed by pett
duplicate
10:24 AM Ticket #18802 (ffmpeg: Permission Denied) closed by pett
duplicate: Hi Thom, Thanks for reporting this problem. It is fixed in the …
10:21 AM Ticket #18432 (kvfinder KeyError: 'KAA') closed by pett
fixed: Fixed by pyKVFinder 0.8.3
6:55 AM Ticket #18816 (SEQCROW: 'ArtistList' object has no attribute 'remove') created by chimerax-bug-report@…
[…]
6:50 AM Ticket #18815 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
6:48 AM Ticket #18814 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
4:46 AM Ticket #18813 (ffmpeg: Permission Denied) created by chimerax-bug-report@…
[…]
2:54 AM Ticket #18812 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
2:52 AM Ticket #18811 (Crash on Mac in OpenGL driver) created by chimerax-bug-report@…
[…]
1:03 AM Ticket #18810 (QScore: 'scores' is None) created by chimerax-bug-report@…
[…]
1:03 AM Ticket #18809 (Various DLL load failures) created by chimerax-bug-report@…
[…]
12:14 AM Ticket #18808 (Various sequence-viewer errors) created by chimerax-bug-report@…
[…]

Sep 17, 2025:

11:24 PM Ticket #18807 (Crash in event loop) created by chimerax-bug-report@…
[…]
10:41 PM Ticket #18806 (ISOLDE Ramachandran Plot: UnboundLocalError: cannot access local ...) created by chimerax-bug-report@…
[…]
10:37 PM Ticket #18805 (ISOLDE Ramachandran Plot: UnboundLocalError: cannot access local ...) created by chimerax-bug-report@…
[…]
9:05 PM Ticket #18804 (Vina output in ViewDock: KeyError: 'RMSD l.b.') created by kathe.dahlstrom@…
[…]
5:58 PM 2025-9-19 edited by Tom Goddard
(diff)
5:58 PM DeveloperMeetings edited by Tom Goddard
(diff)
5:09 PM Ticket #18803 (ViewDock H-bonds → traceback) created by iamkaant@…
[…]
4:03 PM Training edited by Tom Goddard
(diff)
4:01 PM Training edited by Tom Goddard
(diff)
3:02 PM Ticket #18802 (ffmpeg: Permission Denied) created by saddlemountain@…
[…]
10:06 AM Ticket #18800 (Opening OME TIFF stack: KeyError: 'Name') closed by Tom Goddard
fixed: Fixed. Opened an OME TIFF file where the Image tag did not have a …
9:50 AM Ticket #18801 (Crash closing tool with in-window status bar with PySide 6.9.2) closed by pett
duplicate
9:42 AM Ticket #18801 (Crash closing tool with in-window status bar with PySide 6.9.2) created by chimerax-bug-report@…
[…]
9:21 AM Ticket #18798 (AddH: Singular matrix) closed by pett
not a bug: Hi Jitendra, Thanks for reporting this problem. It typically …
9:17 AM Ticket #18797 (Crash opening file) closed by pett
can't reproduce
9:10 AM Ticket #18800 (Opening OME TIFF stack: KeyError: 'Name') created by chimerax-bug-report@…
[…]
6:45 AM Ticket #18799 (ffmpeg: Permission denied) created by chimerax-bug-report@…
[…]
5:50 AM Ticket #18798 (AddH: Singular matrix) created by jitued@…
[…]

Sep 16, 2025:

5:09 PM Ticket #18692 (Sequence viewer 'PySide6.QtWebEngineCore.QWebEngineUrlRequestInfo' ...) closed by Zach Pearson
fixed: I think this is fixed for the same reason #18646 is fixed. I played …
3:34 PM Ticket #18646 (log hyperlink: 'PySide6.QtCore.QUrl.toString' called with wrong ...) closed by Zach Pearson
fixed: PySide6 expects a QUrl.ComponentFormatingOption, not a …
2:34 PM Ticket #18653 (PySide: crash destroying tool) closed by Zach Pearson
fixed: I think 6.9.2 or possibly some code change made while I was away fixed …
2:30 PM Ticket #18658 (PySide: closing Renumber Residues) closed by Zach Pearson
can't reproduce: Wasn't able to reproduce this on *my* Mac. I did a fresh build with …
2:18 PM Ticket #18797 (Crash opening file) created by chimerax-bug-report@…
[…]
10:33 AM Ticket #18795 (HDF5: file signature not found) closed by Tom Goddard
can't reproduce: This is the 5th report of HDF "file signature not found". Four of the …
10:29 AM Ticket #18794 (Boltz: _each_ligand_predictions: name 'self' is not defined) closed by Tom Goddard
fixed: Fixed. Predicting for multiple ligands with Boltz without predicting …
10:22 AM Dev2025-9-22 created by Tom Goddard
10:19 AM 2025-9-19 created by Tom Goddard
10:18 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:16 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:07 AM Ticket #18796 (Crash moving window between screens) closed by pett
duplicate
9:05 AM Ticket #18796 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
8:46 AM Ticket #18792 (Crash on Mac waking from sleep) closed by pett
duplicate
8:44 AM Ticket #18791 (Crash adding/removing screen) closed by pett
duplicate
8:39 AM Ticket #18795 (HDF5: file signature not found) created by chimerax-bug-report@…
[…]
6:53 AM Ticket #18794 (Boltz: _each_ligand_predictions: name 'self' is not defined) created by chimerax-bug-report@…
[…]
1:01 AM Ticket #18793 (CliX: Could not determine home directory) created by chimerax-bug-report@…
[…]

Sep 15, 2025:

11:59 PM Ticket #18792 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
11:34 PM Ticket #18791 (Crash adding/removing screen) created by chimerax-bug-report@…
[…]
5:53 PM Ticket #18117 (Model panel grouping controls) closed by pett
fixed: The next daily build will have an interface for grouping models, …
4:02 PM DeveloperMeetings edited by Tom Goddard
(diff)
4:01 PM DeveloperMeetings edited by Tom Goddard
(diff)
4:00 PM Dev2025-9-15 edited by Tom Goddard
(diff)
11:42 AM Ticket #18790 (pae is not a file in the archive) closed by Tom Goddard
duplicate: User tried to open a Boltz .npz pLDDT file but ChimeraX only handles …
11:32 AM Ticket #18785 (Save MRC file: could not broadcast input array) closed by Tom Goddard
limitation: One day I may change volume flip so it makes a new full copy of the …
11:31 AM Ticket #18789 ('pip install pyKVFinder' fails with empty error message) closed by pett
duplicate: Duplicate of #17229 Still waiting for someone to report this on 1.11 …
11:27 AM Ticket #18788 (Crash during deep recursion) closed by pett
can't reproduce: Don't really have a strong feeling as to what's going on here.
11:22 AM Ticket #18787 (Command script: maximum recursion depth exceeded) closed by pett
can't reproduce: I'm guessing the script calls itself.
11:10 AM Ticket #18780 (Various memory errors) closed by Tom Goddard
limitation: The memory errors are almost always on Windows. This machine has 16 …
11:08 AM Ticket #18786 (ffmpeg: Permission Denied) closed by pett
duplicate: Hi Serhat, Thanks for reporting this problem. It is fixed in the …
11:05 AM Ticket #18784 ('MRCGrid' object has no attribute 'dicom_data') closed by pett
duplicate
11:04 AM Ticket #18783 (ffmpeg: Permission Denied) closed by pett
duplicate
11:04 AM Ticket #18782 (Crash calling Python object finalizer) closed by pett
can't reproduce: After/during a failure to open an alignment file due to mismatched …
10:20 AM Ticket #18779 (Crash in garbage collection) closed by pett
duplicate
10:18 AM Ticket #18778 (Unknown problem) closed by pett
can't reproduce
10:17 AM Ticket #18777 (ffmpeg: Permission Denied) closed by pett
duplicate
10:14 AM Ticket #18776 (ffmpeg: Permission Denied) closed by pett
duplicate: Hi Kye, Thanks for reporting this problem. Yes, as you discovered it …
10:02 AM Ticket #18790 (pae is not a file in the archive) created by chimerax-bug-report@…
[…]
9:45 AM Ticket #18789 ('pip install pyKVFinder' fails with empty error message) created by chimerax-bug-report@…
[…]
7:54 AM Ticket #18788 (Crash during deep recursion) created by chimerax-bug-report@…
[…]
7:45 AM Ticket #18787 (Command script: maximum recursion depth exceeded) created by chimerax-bug-report@…
[…]
5:52 AM Ticket #18786 (ffmpeg: Permission Denied) created by serhat.doenmez@…
[…]
3:29 AM Ticket #18785 (Save MRC file: could not broadcast input array) created by chimerax-bug-report@…
[…]
2:43 AM Ticket #18784 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
2:32 AM Ticket #18783 (ffmpeg: Permission Denied) created by chimerax-bug-report@…
[…]

Sep 14, 2025:

9:49 AM Ticket #18782 (Crash calling Python object finalizer) created by chimerax-bug-report@…
[…]
1:11 AM Ticket #18781 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') created by chimerax-bug-report@…
[…]

Sep 13, 2025:

7:22 PM Ticket #18780 (Various memory errors) created by chimerax-bug-report@…
[…]
2:59 AM Ticket #18779 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
1:17 AM Ticket #18778 (Unknown problem) created by chimerax-bug-report@…
[…]
12:14 AM Ticket #18777 (ffmpeg: Permission Denied) created by chimerax-bug-report@…
[…]

Sep 12, 2025:

1:21 PM Ticket #18776 (ffmpeg: Permission Denied) created by kstachowski@…
[…]
12:33 PM Ticket #18775 (color byattribute range option gives wrong range when palette is alphafold) closed by Tom Goddard
fixed: Fixed. The command "color bfactor palette alphafold range 40,100" now …
11:45 AM Ticket #18775 (color byattribute range option gives wrong range when palette is alphafold) created by goddard@…
[…]
10:13 AM Ticket #18773 (Boltz progress reporting for dead window) closed by Tom Goddard
duplicate: Was fixed several weeks ago in daily build. Boltz GUI closed (in this …
9:55 AM Ticket #18774 (Can't save session because NewerVersionQuery not listed) closed by pett
duplicate
9:47 AM Ticket #18772 (ArtiaX session save: Unknown class name 'MarkerSetPlus') closed by pett
duplicate: Fixed as of ArtiaX 0.4.1 (this ticket has 0.1)
9:43 AM Ticket #18771 (Crash on Mac waking from sleep) closed by pett
duplicate
9:41 AM Ticket #18770 (ffmpeg: Permission denied) closed by pett
duplicate
5:28 AM Ticket #18774 (Can't save session because NewerVersionQuery not listed) created by chimerax-bug-report@…
[…]
3:39 AM Ticket #18773 (Boltz progress reporting for dead window) created by chimerax-bug-report@…
[…]
2:00 AM Ticket #18772 (ArtiaX session save: Unknown class name 'MarkerSetPlus') created by chimerax-bug-report@…
[…]
12:41 AM Ticket #18771 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Sep 11, 2025:

11:33 PM Ticket #18770 (ffmpeg: Permission denied) created by chimerax-bug-report@…
[…]
3:38 PM Ticket #18769 (Adjust AlphaFold pLDDT coloring to better match EBI color scale.) created by Tom Goddard
From the ChimeraX mailing list: …
3:20 PM Ticket #18768 (Crash creating QWebEngineProfile) closed by Tom Goddard
can't reproduce: The constructor call QWebEngineProfile(parent) with parent = QWidget …
2:26 PM Ticket #18766 (Crash moving windows between screens) closed by Tom Goddard
duplicate: What we know about this ChimeraX crash was shown in the bug report …
2:24 PM Ticket #18767 (Crash gathering atomic structure session information) closed by pett
can't reproduce
2:19 PM Ticket #18768 (Crash creating QWebEngineProfile) created by chimerax-bug-report@…
[…]
2:19 PM Ticket #18765 (XMAS: color key deleted multiple times) closed by pett
duplicate: Duplicate of #18761
2:13 PM Ticket #18764 (Crash in event loop) closed by pett
can't reproduce
1:55 PM Ticket #18767 (Crash gathering atomic structure session information) created by chimerax-bug-report@…
[…]
1:31 PM 2025-9-11 edited by Tom Goddard
(diff)
1:20 PM Dev2025-9-15 edited by Tom Goddard
(diff)
1:15 PM Ticket #18766 (Crash moving windows between screens) created by i.lidbury@…
[…]
12:57 PM Ticket #18765 (XMAS: color key deleted multiple times) created by chimerax-bug-report@…
[…]

Sep 10, 2025:

5:16 PM Ticket #18764 (Crash in event loop) created by chimerax-bug-report@…
[…]
12:54 PM Ticket #18762 (Crash on Mac waking from sleep) closed by pett
duplicate
12:48 PM Ticket #18759 ('MRCGrid' object has no attribute 'dicom_data') closed by pett
duplicate
12:35 PM Ticket #18751 (Crash moving window between screens) closed by Tom Goddard
duplicate: The ChimeraX bug report panel explained what we know about this crash: …
12:01 PM Ticket #18758 ('MRCGrid' object has no attribute 'dicom_data') closed by pett
duplicate
12:00 PM Ticket #18757 (XTC file with Unicode path) closed by pett
duplicate: Duplicate of #16493; xdrfile 1.1.4 is still the latest release.
11:56 AM Ticket #18756 (Crash closing tool with in-window status bar with PySide 6.9.2) closed by pett
duplicate: Hi Hannah, Thanks for trying out the tech preview. As you …
11:46 AM Ticket #18755 (Crash at exit) closed by pett
can't reproduce: Predate the fix to not call QApplication.quit() on exit, though I do …
11:40 AM Ticket #18754 (Crash closing tool with in-window status bar with PySide 6.9.2) closed by pett
duplicate: Duplicate of #18630
11:30 AM Ticket #18750 (Coulombic failure) closed by pett
not a bug: Hi Marcin, Thanks for reporting this problem. You can ignore the …
11:17 AM Ticket #18749 ('ArrayGridData' object has no attribute 'dicom_data') closed by pett
duplicate
10:33 AM Ticket #18747 (log hyperlink: 'PySide6.QtCore.QUrl.toString' called with wrong ...) closed by pett
duplicate: Duplicate of #18646
10:30 AM Ticket #18763 (Crash creating pseudobond group Python instance) created by ccaffalett@…
[…]
10:27 AM Ticket #18746 (Graphics hardware encountered an error and was reset) closed by pett
duplicate
10:08 AM Ticket #18762 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
7:34 AM Ticket #18761 (XMAS: color key deleted multiple times) created by chimerax-bug-report@…
[…]
7:26 AM Ticket #18760 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
7:25 AM Ticket #18759 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
6:40 AM Ticket #18758 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
5:39 AM Ticket #18757 (XTC file with Unicode path) created by chimerax-bug-report@…
[…]
1:21 AM Ticket #18756 (Crash closing tool with in-window status bar with PySide 6.9.2) created by wambuiche08@…
[…]
1:13 AM Ticket #18755 (Crash at exit) created by chimerax-bug-report@…
[…]
12:59 AM Ticket #18754 (Crash closing tool with in-window status bar with PySide 6.9.2) created by chimerax-bug-report@…
[…]

Sep 9, 2025:

7:47 PM Ticket #18753 (Closing segmentation cursors: self._positions is None) created by chimerax-bug-report@…
[…]
7:35 PM Ticket #18752 (ISOLDE simulation running: crash in ...) created by chimerax-bug-report@…
[…]
6:29 PM Ticket #18751 (Crash moving window between screens) created by sphulera@…
[…]
1:17 PM Ticket #18750 (Coulombic failure) created by marcinwojciech.balcerzyk@…
[…] 4PYP_prepared_glucose0.pdb
12:49 PM Ticket #18749 ('ArrayGridData' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
11:40 AM Dev2025-9-15 created by Tom Goddard
11:39 AM 2025-9-11 created by Tom Goddard
11:38 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:32 AM Ticket #18748 (Molecular Dynamics Viewer not handling hexadecimal residue numbers) created by chimerax-bug-report@…
[…]
10:45 AM Ticket #18747 (log hyperlink: 'PySide6.QtCore.QUrl.toString' called with wrong ...) created by chimerax-bug-report@…
[…]
10:00 AM Ticket #18746 (Graphics hardware encountered an error and was reset) created by chimerax-bug-report@…
[…]
9:37 AM Ticket #18745 (Crash opening mmCIF) closed by pett
can't reproduce
9:31 AM Ticket #18744 (Crash on Mac waking from sleep) closed by pett
duplicate
9:27 AM Ticket #18742 (Crash on exit) closed by pett
duplicate: From before the don't-call-QApplication.quit() fix went in.
9:24 AM Ticket #18741 (Session restore: invalid load key, '\x04') closed by pett
limitation: Hi John, Whereas you can open old sessions in new versions of …
2:55 AM Ticket #18745 (Crash opening mmCIF) created by chimerax-bug-report@…
[…]
12:39 AM Ticket #18744 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
12:15 AM Ticket #18743 (Crash in event loop) created by 2023020518@…
[…]

Sep 8, 2025:

9:13 PM Ticket #18742 (Crash on exit) created by chimerax-bug-report@…
[…]
4:48 PM Ticket #18741 (Session restore: invalid load key, '\x04') created by jofrank@…
[…] ITGAL_xray_verson.cxs
4:02 PM Dev2025-9-8 edited by Tom Goddard
(diff)
3:08 PM Dev2025-9-8 edited by Tom Goddard
(diff)
2:23 PM phenix-9-11-25 edited by pett
(diff)
2:19 PM phenix-9-11-25 edited by pett
(diff)
2:18 PM phenix-9-11-25 edited by pett
(diff)
1:51 PM phenix-9-11-25 edited by pett
(diff)
1:50 PM phenix-9-11-25 edited by pett
(diff)
1:38 PM phenix-9-11-25 created by pett
1:38 PM Features edited by pett
(diff)
1:23 PM Ticket #18740 (No space left on device) closed by pett
nonchimerax: Hi Samitha, This error ("No space left on device") means that you ran …
1:00 PM Ticket #18737 (Crash on Mac waking from sleep) closed by pett
duplicate
12:57 PM Ticket #18736 (ffmpeg: Permission Denied) closed by pett
duplicate
12:55 PM Ticket #18735 (Crash on Mac waking from sleep) closed by pett
duplicate
12:53 PM Ticket #18734 (Graphics hardware encountered an error and was reset:) closed by pett
duplicate
12:35 PM Ticket #18726 (Qt fatal error: GLOzone not found for unknown) closed by Greg Couch
duplicate: Apparent duplicate of #18675
12:31 PM Ticket #18733 (DICOM output problems and Wavefront output error) closed by Tom Goddard
fixed: None of the 3d scene export formats (.obj, .glb, .x3d) handle 3D …
12:06 PM Ticket #18729 (Error in glViewport while drawing status bar) closed by Tom Goddard
can't reproduce: Seen this many times mostly on Windows, expose event triggers status …
11:54 AM Ticket #18732 (Crash in event loop) closed by pett
can't reproduce
11:52 AM Ticket #18731 ('CategorizedOptionsPanel' object has no attribute 'currentIndex') closed by pett
duplicate: Hi Peter, Thanks for reporting this problem. It was fixed about 4 …
11:15 AM Ticket #18730 (Viewing SWISSDOCK output) closed by pett
not a bug: Hi Yaozong, You don't open SwissDock output with DICOM format (which …
10:41 AM Ticket #18728 (QWaitCondition: Destroyed while threads are still waiting) closed by pett
can't reproduce: Happened while setting HTML log text. Seems like the communication to …
10:38 AM Ticket #18727 (Qt fatal error: GLOzone not found for unknown) closed by pett
duplicate
10:29 AM Ticket #18725 (Crash in garbage collection) closed by pett
duplicate
10:27 AM Ticket #18724 (Segmentation cursor is None) closed by pett
duplicate: Duplicate of #17004
9:54 AM Ticket #18740 (No space left on device) created by samithar@…
[…]
8:31 AM Ticket #18739 (Open QChem output file: unsupported operand type(s) for +=: 'NoneType' ...) created by chimerax-bug-report@…
[…] idea_rct+THF_opt2.out
7:49 AM Ticket #18738 (isolde sim start: OpenMMException: Error compiling kernel) created by chimerax-bug-report@…
[…]
1:38 AM Ticket #18737 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Sep 7, 2025:

11:49 PM Ticket #18736 (ffmpeg: Permission Denied) created by chimerax-bug-report@…
[…]
10:28 PM Ticket #18735 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
12:41 PM Ticket #18734 (Graphics hardware encountered an error and was reset:) created by chimerax-bug-report@…
[…]
9:12 AM Ticket #18733 (DICOM output problems and Wavefront output error) created by weberm@…
[…]
7:44 AM Ticket #18732 (Crash in event loop) created by chimerax-bug-report@…
[…]
5:00 AM Ticket #18731 ('CategorizedOptionsPanel' object has no attribute 'currentIndex') created by pmcarlton@…
[…]
2:50 AM Ticket #18730 (Viewing SWISSDOCK output) created by yaozong.chen0915@…
[…] result.dock4
2:50 AM Ticket #18729 (Error in glViewport while drawing status bar) created by chimerax-bug-report@…
[…]
2:12 AM Ticket #18728 (QWaitCondition: Destroyed while threads are still waiting) created by chimerax-bug-report@…
[…]

Sep 6, 2025:

10:20 PM Ticket #18727 (Qt fatal error: GLOzone not found for unknown) created by chimerax-bug-report@…
[…]
9:19 PM Ticket #18726 (Qt fatal error: GLOzone not found for unknown) created by chimerax-bug-report@…
[…]
11:01 AM Ticket #18725 (Crash in garbage collection) created by chimerax-bug-report@…
[…]

Sep 5, 2025:

3:54 PM Ticket #18724 (Segmentation cursor is None) created by chimerax-bug-report@…
[…]
12:53 PM Ticket #18723 (glClear: invalid framebuffer operation) closed by Tom Goddard
can't reproduce: This error is probably a bug in either the Qt window toolkit or …
12:36 PM Ticket #18721 (Cannot open NASA .glb files: KeyError: 'bufferView') closed by Tom Goddard
wontfix: The ChimeraX GLTF reader does not handle every aspect of the GLTF …
11:32 AM Ticket #18722 (Session restore: KeyError: "combine") closed by pett
duplicate: Duplicate of ; they all seem to involve volumes not being restored
11:27 AM Ticket #18720 (Crash opening file) closed by pett
can't reproduce: Probable drag-and-drop
11:09 AM Ticket #18723 (glClear: invalid framebuffer operation) created by Imarquez8943@…
[…]
10:23 AM Ticket #18718 (Crash okaying dialog) closed by pett
can't reproduce: Possibly okaying open dialog for session.
10:07 AM Ticket #18716 (Crash using open/save dialog) closed by pett
can't reproduce
9:59 AM Ticket #18715 (Crash in event loop) closed by pett
limitation: Remote display
9:57 AM Ticket #18714 ('ArrayGridData' object has no attribute 'dicom_data') closed by pett
duplicate
9:53 AM Ticket #18713 (PySide crash while showing Modeller Comparative tool) closed by pett
duplicate: Duplicate of #18707
9:46 AM Ticket #18711 (Crash closing tool with in-window status bar with PySide) closed by pett
duplicate: Duplicate of #18630
8:40 AM Ticket #18722 (Session restore: KeyError: "combine") created by chimerax-bug-report@…
[…]
8:08 AM Ticket #18721 (Cannot open NASA .glb files: KeyError: 'bufferView') created by weberm@…
[…] Mars 2020 Perseverance Rover.glb
7:18 AM Ticket #18720 (Crash opening file) created by chimerax-bug-report@…
[…]
5:18 AM Ticket #18719 (Bad Swissdock file) created by vaishnvi.chikhale@…
[…]
4:10 AM Ticket #18718 (Crash okaying dialog) created by chimerax-bug-report@…
[…]
3:49 AM Ticket #18717 (Crash rendering Qt widget) created by g.s.stewart@…
[…]
1:36 AM Ticket #18716 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
12:31 AM Ticket #18715 (Crash in event loop) created by chimerax-bug-report@…
[…]

Sep 4, 2025:

11:30 PM Ticket #18714 ('ArrayGridData' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
10:38 PM Ticket #18713 (PySide crash while showing Modeller Comparative tool) created by chimerax-bug-report@…
[…]
6:40 PM Ticket #18712 ('BlobOutlineBox' object has no attribute 'data') created by chimerax-bug-report@…
[…]
6:28 PM Ticket #18711 (Crash closing tool with in-window status bar with PySide) created by chimerax-bug-report@…
[…]
3:56 PM Ticket #18710 (Save NifTi: 'NoneType' object is not subscriptable) created by gregdp@…
[…]
3:16 PM Ticket #18706 (Crash closing tool with in-window status bar with PySide) closed by pett
duplicate: Duplicate of #18630
2:51 PM Ticket #18705 (Multiple consecutive Find Cavities: dead models) closed by pett
can't reproduce: Unlike #18600, not after an initial failed install.
2:36 PM Ticket #18704 (Crash using open/save dialog) closed by pett
can't reproduce
2:34 PM Ticket #18703 (Crash in garbage collection) closed by pett
duplicate
2:23 PM Ticket #18700 (Not a ChimeraX session file) closed by Greg Couch
fixed: Not sure why this case was a RuntimeError instead of a UserError. So …
2:12 PM Ticket #18701 (pae is not a file in the archive) closed by Tom Goddard
fixed: The user tried to open a predicted distance error .npz file from Boltz …
2:04 PM Ticket #18709 (ffmpeg: Permission Denied) created by akennard@…
[…]
1:46 PM Ticket #18699 (Tried to charge HIS) closed by pett
can't reproduce
1:42 PM Ticket #18698 (Crash in event loop) closed by pett
can't reproduce
12:00 PM Training edited by Tom Goddard
(diff)
8:40 AM Ticket #18708 (Cannot resize UV/Vis plot) created by aligula.jeff@…
[…]
7:39 AM Ticket #18707 (PySide crash while showing Modeller Comparative tool) created by chimerax-bug-report@…
[…]
7:35 AM Ticket #18706 (Crash closing tool with in-window status bar with PySide) created by chimerax-bug-report@…
[…]
4:13 AM Ticket #18705 (Multiple consecutive Find Cavities: dead models) created by chimerax-bug-report@…
[…]
2:11 AM Ticket #18704 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
1:49 AM Ticket #18703 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
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