Timeline



Mar 3, 2025:

5:54 PM Ticket #16581 (ui view fourup: OpenGL texture was not deleted before graphics.Texture ...) closed by Zach Pearson
fixed: It has been
5:52 PM Ticket #16834 (ViewDockX tool page in app but not on web site) closed by Zach Pearson
fixed: Should be working now, I've updated the Rocky 8 build so that it pulls …
5:21 PM Ticket #16265 (Failed notarizations should not be put in downloads) closed by Zach Pearson
fixed
4:18 PM Ticket #16970 (Segmentations: 'NoneType' object has no attribute 'image_colors') closed by Zach Pearson
fixed: I'm not sure how this code was reached here, given that the last …
4:09 PM Ticket #16918 (Bug report segmentations) closed by Zach Pearson
fixed: This should be fixed in tomorrow's build. Please let me know if you …
4:05 PM Ticket #17008 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
3:54 PM Dev2025-3-3 edited by Tom Goddard
(diff)
3:53 PM Ticket #17004 (Segmentation cursor is None) closed by Zach Pearson
fixed: This is fixed in newer releases (1.9) or daily builds.
2:32 PM Ticket #17006 (Scipy symbol not found) closed by pett
limitation
2:32 PM Ticket #17006 (Scipy symbol not found) reopened by pett
1:45 PM Ticket #17006 (Scipy symbol not found) closed by Zach Pearson
worksforme: Downloaded the most recent daily build and ran all the user's commands …
1:18 PM Ticket #17005 (Crash moving window between screens) closed by Tom Goddard
duplicate
12:12 PM Ticket #17007 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
12:04 PM Ticket #17003 (Find Cavities crash) closed by pett
duplicate
12:01 PM Ticket #17002 (Crash in chem_group on Windows) closed by pett
can't reproduce
11:46 AM Ticket #17001 (Crash in chem_group on Windows) closed by pett
can't reproduce
11:41 AM Ticket #17000 (MemoryError saving session) closed by pett
can't reproduce: Weird that the user was able to save a session just a few commands …
11:29 AM Ticket #16999 (Crash in event loop) closed by pett
can't reproduce
11:28 AM Dev2025-3-3 edited by Tom Goddard
(diff)
11:28 AM Ticket #16998 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
11:27 AM Dev2025-3-3 edited by Tom Goddard
(diff)
11:26 AM Ticket #16997 (Crash in Side View swap_buffers) closed by pett
can't reproduce
11:17 AM Ticket #16995 (Crash in timer execution while modal dialog shown) closed by pett
can't reproduce
11:15 AM Ticket #16994 (Crash in chem_group on Windows) closed by pett
can't reproduce
11:13 AM Ticket #16993 (Crash in chem_group on Windows) closed by pett
can't reproduce
10:46 AM Ticket #16992 (Crash in event loop) closed by pett
can't reproduce: Nothing going on in the stack traces except trying to contact the …
10:07 AM Ticket #17007 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
7:35 AM Ticket #17006 (Scipy symbol not found) created by chimerax-bug-report@…
[…]
4:35 AM Ticket #17005 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
1:44 AM Ticket #17004 (Segmentation cursor is None) created by chimerax-bug-report@…
[…]

Mar 2, 2025:

4:49 PM Ticket #17003 (Find Cavities crash) created by chimerax-bug-report@…
[…]
4:35 PM Ticket #17002 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]
2:59 PM Ticket #17001 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]
5:37 AM Ticket #17000 (MemoryError saving session) created by chimerax-bug-report@…
[…]

Mar 1, 2025:

4:19 PM Ticket #16999 (Crash in event loop) created by chimerax-bug-report@…
[…]
3:17 PM Ticket #16998 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
1:41 PM Ticket #16997 (Crash in Side View swap_buffers) created by chimerax-bug-report@…
[…]
6:58 AM Ticket #16996 (SEQCROW: problem contacting CACTUS web API) created by chimerax-bug-report@…
[…]
6:38 AM Ticket #16995 (Crash in timer execution while modal dialog shown) created by chimerax-bug-report@…
[…]
2:46 AM Ticket #16994 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]
2:43 AM Ticket #16993 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]

Feb 28, 2025:

4:28 PM Ticket #16992 (Crash in event loop) created by chimerax-bug-report@…
[…]
1:36 PM Ticket #16773 (ChimeraX bug report submission) closed by Zach Pearson
duplicate: This is a duplicate of #16918. Normally I would close the later …
1:31 PM Ticket #16916 ('MRCGrid' object has no attribute 'dicom_data') closed by Zach Pearson
fixed: This should be fixed in recent daily builds.
1:01 PM Ticket #16959 (Segmentations should not import VR at startup) closed by Zach Pearson
fixed: As of …
11:45 AM Ticket #16979 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
11:25 AM Ticket #16991 (Crash on exit, possibly related to threading) closed by Tom Goddard
duplicate: Unfortunately this is the 3rd report of this crash in 2 weeks all with …
11:16 AM Ticket #16990 (Crash moving window between screens) closed by Tom Goddard
duplicate: The crash report panel you used to report this bug explained what we …
11:09 AM Ticket #16984 (Crash using open/save dialog) closed by pett
can't reproduce
11:08 AM Ticket #16989 (Crash in garbage collection) closed by pett
duplicate
11:07 AM Ticket #16988 (Crash on exit, Qt 6.8.1 multitouch bug) closed by pett
can't reproduce
10:56 AM Ticket #16986 (Crash initializing OpenGL) closed by pett
nonchimerax
10:52 AM Ticket #16985 (Crash processing timer) closed by pett
can't reproduce
10:43 AM Ticket #16991 (Crash on exit, possibly related to threading) created by chimerax-bug-report@…
[…]
10:01 AM Ticket #16982 (Crash in event loop with access violation) closed by pett
can't reproduce
9:59 AM Ticket #16981 (Crash in event loop) closed by pett
can't reproduce
9:55 AM Ticket #16980 (Crash on exit in ~QAccessibleCache()) closed by pett
can't reproduce
9:54 AM Ticket #16990 (Crash moving window between screens) created by milos.cvetkovic@…
[…]
9:26 AM Ticket #16989 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
7:28 AM Ticket #16988 (Crash on exit, Qt 6.8.1 multitouch bug) created by chimerax-bug-report@…
[…]
4:28 AM Ticket #16987 (Modeller failure) created by Mitch Murphy
[…]
2:07 AM Ticket #16986 (Crash initializing OpenGL) created by chimerax-bug-report@…
[…]
12:52 AM Ticket #16985 (Crash processing timer) created by chimerax-bug-report@…
[…]

Feb 27, 2025:

8:10 PM Ticket #16984 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
4:06 PM Ticket #16983 (Crash in bug reporter) created by chimerax-bug-report@…
[…]
3:19 PM 2025-2-27 edited by Tom Goddard
(diff)
3:06 PM Ticket #16978 (MemoryError saving maps in sessions) closed by Tom Goddard
limitation: Out of memory saving a session with many maps.
3:03 PM Ticket #16976 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
3:02 PM Ticket #16974 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
2:37 PM Ticket #16982 (Crash in event loop with access violation) created by chimerax-bug-report@…
[…]
2:18 PM Ticket #16981 (Crash in event loop) created by chimerax-bug-report@…
[…]
2:12 PM NIAID2024 edited by Elaine Meng
(diff)
1:59 PM NIAID2024 edited by Elaine Meng
(diff)
1:55 PM Ticket #16980 (Crash on exit in ~QAccessibleCache()) created by chimerax-bug-report@…
[…]
1:30 PM NIAID2024 edited by Elaine Meng
(diff)
12:56 PM Ticket #16979 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
12:26 PM ChangeLog edited by Elaine Meng
(diff)
12:26 PM ChangeLog edited by Elaine Meng
(diff)
12:24 PM ChangeLog edited by Elaine Meng
(diff)
10:55 AM Ticket #16977 (Crash showing open-file dialog while under remote control) closed by pett
can't reproduce
10:37 AM Ticket #16978 (MemoryError saving maps in sessions) created by chimerax-bug-report@…
[…]
9:30 AM Ticket #16977 (Crash showing open-file dialog while under remote control) created by chimerax-bug-report@…
[…]
8:43 AM Ticket #16973 (Crash moving window between screens) closed by pett
duplicate
7:54 AM Ticket #16976 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
6:13 AM Ticket #16975 (X11 connection broke) created by chimerax-bug-report@…
[…]

Feb 26, 2025:

5:36 PM ChangeLog edited by Elaine Meng
(diff)
5:26 PM Ticket #16833 ("devel" help page) closed by Elaine Meng
fixed
4:37 PM Ticket #16974 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
2:50 PM Ticket #16973 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
2:45 PM Ticket #16627 (ChimeraX with Qt 6.8 crashes at exit nearly every time on Mac) closed by Zach Pearson
fixed
12:35 PM Ticket #16969 (Foldseek: list index out of range) closed by Tom Goddard
fixed: Fixed in Feb 27, 2025 daily build. Foldseek search gives this error …
12:15 PM Ticket #16968 (Session restore: Similar Structures: 'NoneType' object has no ...) closed by Tom Goddard
fixed: Fixed. Yikes. Session save fails if the Similar Structures gui is …
12:07 PM Ticket #16966 (Graphics crash, macOS 15.2, Intel Iris Plus Graphics 655) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
11:51 AM Ticket #16965 (ArrayMemoryError in volume splitbyzone) closed by Tom Goddard
limitation: The user had 22 open maps that were not saved in separate map files. …
11:27 AM Ticket #16972 ('#' character in sequence name of Modeller job) closed by pett
duplicate: Hi Manuel, Thanks for reporting this problem. It was fixed a little …
11:06 AM Ticket #16971 (Session save: No bundle information for chimerax.core.tasks.Tasks) closed by pett
duplicate: Hi Chiara, Thanks for reporting this problem. It was fixed in the …
9:53 AM Ticket #16972 ('#' character in sequence name of Modeller job) created by mllanos@…
[…]
9:51 AM Ticket #16971 (Session save: No bundle information for chimerax.core.tasks.Tasks) created by cjg279@…
[…]
9:32 AM Ticket #16967 (MemoryError opening mmCIF file) closed by pett
duplicate
9:23 AM Ticket #16964 (Crash in garbage collection) closed by pett
duplicate
9:22 AM Ticket #16963 (Crash on Mac waking from sleep) closed by pett
duplicate
9:21 AM Ticket #16961 (Problem setting background color from Color Actions) closed by pett
duplicate: Hi Mojgan, Thanks for reporting this problem. It was fixed in the …
8:41 AM Ticket #16970 (Segmentations: 'NoneType' object has no attribute 'image_colors') created by chimerax-bug-report@…
[…]
7:11 AM Ticket #16969 (Foldseek: list index out of range) created by lukas.bauer@…
[…] ChopChopMF_V0.2.zip
6:10 AM Ticket #16968 (Session restore: Similar Structures: 'NoneType' object has no ...) created by chimerax-bug-report@…
[…]
4:01 AM Ticket #16967 (MemoryError opening mmCIF file) created by chimerax-bug-report@…
[…]
1:09 AM Ticket #16966 (Graphics crash, macOS 15.2, Intel Iris Plus Graphics 655) created by chimerax-bug-report@…
[…]

Feb 25, 2025:

11:49 PM Ticket #16965 (ArrayMemoryError in volume splitbyzone) created by chimerax-bug-report@…
[…]
10:31 PM Ticket #16964 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
5:36 PM Ticket #16791 (Windows Subsystem for Linux crash at startup: malloc corruption) closed by Greg Couch
limitation: Sorry, WSL is not supported. If it works, great, if not, then that is …
5:27 PM Ticket #16963 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
5:26 PM Ticket #16962 (Crash on "xr off" after display sleep with Sony Spatial Reality display) created by goddard@…
[…]
4:28 PM Ticket #16961 (Problem setting background color from Color Actions) created by asadi1@…
[…]
1:28 PM Ticket #16960 (Dock Prep "save MOL2" not working) closed by pett
fixed: Fix: …
1:10 PM Ticket #16960 (Dock Prep "save MOL2" not working) created by alphataubio@…
per summary
12:44 PM Ticket #16959 (Segmentations should not import VR at startup) created by goddard@…
[…]
11:44 AM Dev2025-3-3 created by Tom Goddard
11:42 AM Ticket #16958 (Toolshed adds random characters to wheel file) created by yuval.abeles@…
Yuval Abeles submitted version 0.1.2 of his EMAlign bundle to Toolshed …
11:34 AM 2025-2-27 created by Tom Goddard
11:33 AM 2025-2-20 edited by Tom Goddard
(diff)
11:27 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:16 AM Ticket #16957 (Crash using open/save dialog) closed by pett
duplicate
11:16 AM Ticket #16956 (Crash using open/save dialog) closed by pett
duplicate
11:15 AM Ticket #16955 (Crash using open/save dialog) closed by pett
can't reproduce: Hi Julia, Thanks for reporting this problem. I would recommend …
10:44 AM Ticket #16954 (Crash in swap_buffers after various Qt context problems) closed by pett
can't reproduce: Probable remote display issues
10:38 AM Ticket #16953 (Crash in chem_group on Windows) closed by pett
can't reproduce
4:49 AM Ticket #16957 (Crash using open/save dialog) created by julia.charl@…
[…]
4:49 AM Ticket #16956 (Crash using open/save dialog) created by julia.charl@…
[…]
4:49 AM Ticket #16955 (Crash using open/save dialog) created by julia.charl@…
[…]
3:41 AM Ticket #16954 (Crash in swap_buffers after various Qt context problems) created by chimerax-bug-report@…
[…]
2:27 AM Ticket #16953 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]
2:13 AM Ticket #16952 (Permission denied writing command history) created by chimerax-bug-report@…
[…]

Feb 24, 2025:

8:02 PM Ticket #16951 (Unresponsive on Windows) created by 13251508757@…
[…] ChimeraX.exe
5:18 PM Ticket #16950 (Allow residue labels to be position at C-alpha atom) closed by Tom Goddard
fixed: Done. The label command now has a "position" keyword option with …
5:15 PM Ticket #16950 (Allow residue labels to be position at C-alpha atom) created by Elaine Meng
I wish there was an option or preference or attribute for …
4:51 PM Dev2025-2-24 edited by Tom Goddard
(diff)
2:49 PM Dev2025-2-24 edited by Tom Goddard
(diff)
11:49 AM Ticket #16948 ('ArrayGridData' object has no attribute 'dicom_data') closed by Zach Pearson
fixed: This is fixed in the daily build.
11:34 AM Ticket #16945 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
11:32 AM Ticket #16949 (Remote display failure) closed by pett
limitation
11:27 AM Ticket #16947 (Crash on Mac waking from sleep) closed by pett
duplicate
11:25 AM Ticket #16946 (Crash in garbage collection) closed by pett
duplicate: Hi Malene, Thanks for reporting this problem. It has been fixed in …
11:20 AM Ticket #16944 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
11:19 AM Ticket #16941 (ArrayMemoryError saving session with maps) closed by Tom Goddard
limitation: They got an out of memory error trying to allocate a 90 Mbyte numpy …
11:05 AM Ticket #16940 (Crash in event loop) closed by pett
can't reproduce
11:02 AM Ticket #16935 (openvr.error_code.CompositorError_IsNotSceneApplication) closed by Tom Goddard
wontfix: The user tried to start both an OpenVR and OpenXR connection (vr true) …
11:01 AM Ticket #16939 (Crash in event loop) closed by pett
can't reproduce: A couple of weird things about this one. They use a "CavitOmiX" …
10:45 AM Ticket #16938 (No output from Modeller) closed by pett
can't reproduce: Never got a web service ID. Working fine for me at this moment.
10:35 AM Ticket #16937 (Crash in chem_group on Windows) closed by pett
can't reproduce
10:29 AM Ticket #16949 (Remote display failure) created by chimerax-bug-report@…
[…]
10:01 AM Ticket #16948 ('ArrayGridData' object has no attribute 'dicom_data') created by jinhui.dong.1@…
[…]
8:10 AM Ticket #16947 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
8:09 AM Ticket #16946 (Crash in garbage collection) created by mlurbanus@…
[…]

Feb 23, 2025:

10:09 PM Ticket #16945 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
2:43 PM Ticket #16944 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
8:11 AM Ticket #16943 (Problem creating saccharine input) created by maya.bhat@…
[…] saccharine.inp
3:58 AM Ticket #16942 (Unknown error) created by mai.h.elnaggar@…
[…]
3:32 AM Ticket #16941 (ArrayMemoryError saving session with maps) created by chimerax-bug-report@…
[…]

Feb 22, 2025:

7:10 PM Ticket #16940 (Crash in event loop) created by chimerax-bug-report@…
[…]
2:50 PM Ticket #16939 (Crash in event loop) created by chimerax-bug-report@…
[…]
12:59 PM Ticket #16938 (No output from Modeller) created by chimerax-bug-report@…
[…]
5:39 AM Ticket #16937 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]

Feb 21, 2025:

6:55 PM Ticket #16936 (Crash on exit) created by Elaine Meng
[…]
5:32 PM phenix-2-27-25 edited by pett
(diff)
5:30 PM phenix-2-27-25 edited by pett
(diff)
5:30 PM phenix-2-27-25 edited by pett
(diff)
5:23 PM phenix-2-27-25 edited by pett
(diff)
5:11 PM phenix-2-27-25 edited by pett
(diff)
5:07 PM phenix-2-27-25 edited by pett
(diff)
4:29 PM phenix-2-27-25 created by pett
4:28 PM Features edited by pett
(diff)
1:19 PM Ticket #16935 (openvr.error_code.CompositorError_IsNotSceneApplication) created by chimerax-bug-report@…
[…]
11:16 AM Ticket #16932 (Graphics crash, macOS 11.6, Intel Iris Plus Graphics 645) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
11:14 AM Ticket #16931 (Problem saving segmentations) closed by Tom Goddard
wontfix: The user tried to save a segmentation done with Zach's segmentation …
11:07 AM Ticket #16930 (Crash moving window between screens) closed by Tom Goddard
duplicate: The bug report panel you used to submit this ChimeraX crash explained …
11:03 AM Ticket #16927 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
11:02 AM Ticket #16934 (Failed to initialize graphics backend for OpenGL) closed by pett
can't reproduce
11:02 AM Ticket #16926 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
11:00 AM Ticket #16934 (Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
10:57 AM Ticket #16933 (Crash on Mac waking from sleep) closed by pett
duplicate
10:44 AM Ticket #16933 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
9:55 AM Ticket #16929 (Crash in garbage collection) closed by pett
duplicate
9:55 AM Ticket #16928 (Crash in event loop) closed by pett
can't reproduce
9:15 AM Ticket #16932 (Graphics crash, macOS 11.6, Intel Iris Plus Graphics 645) created by chimerax-bug-report@…
[…]
8:27 AM Ticket #16931 (Problem saving segmentations) created by chimerax-bug-report@…
[…]
7:08 AM Ticket #16930 (Crash moving window between screens) created by silvia.triguis20@…
[…]
2:25 AM Ticket #16929 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
1:59 AM Ticket #16928 (Crash in event loop) created by chimerax-bug-report@…
[…]
12:40 AM Ticket #16927 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Feb 20, 2025:

5:49 PM Ticket #16926 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
5:18 PM Ticket #16924 (Crash moving window between screens) closed by Tom Goddard
duplicate: This crash is caused by a Qt window toolkit bug on Mac with more than …
5:16 PM Ticket #16923 (Many OpenGL errors) closed by Tom Goddard
nonchimerax: Either a remote display problem or OpenGL driver problem.
4:54 PM Ticket #16912 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: The ChimeraX report a bug panel that you used to submit this bug …
3:39 PM Dev2025-2-24 edited by pett
(diff)
3:35 PM Ticket #16899 (Crash in chem_group on Windows) closed by pett
can't reproduce
2:33 PM Dev2025-2-24 edited by pett
(diff)
2:23 PM Dev2025-2-24 edited by pett
(diff)
2:19 PM Ticket #16925 (Crash in python_instances_of_class) closed by pett
duplicate
2:15 PM Ticket #16925 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
1:46 PM Ticket #16922 (Graphics driver crash repainting widget) closed by pett
can't reproduce
1:44 PM Ticket #16921 (Crash in event loop) closed by pett
can't reproduce
1:38 PM Ticket #16920 (ChimeraX Model Joining) closed by pett
not a bug: Forwarded to chimerax-users mailing list where it was answered
1:36 PM Ticket #16919 (Crash drawing status bar) closed by pett
can't reproduce
12:03 PM Ticket #16924 (Crash moving window between screens) created by nferraro@…
[…]
11:05 AM Ticket #16923 (Many OpenGL errors) created by chimerax-bug-report@…
[…]
10:59 AM Ticket #16917 (Crash on Mac waking from sleep) closed by pett
duplicate
10:56 AM Ticket #16915 (Crash opening PDB file) closed by pett
can't reproduce
10:54 AM Ticket #16914 (Crash in open-file dialog) closed by pett
can't reproduce: Hi Kui, Thanks for reporting this problem. It is a problem in the Qt …
10:40 AM Ticket #16922 (Graphics driver crash repainting widget) created by chimerax-bug-report@…
[…]
10:37 AM Ticket #16913 (build atom names) closed by pett
not a bug: Hi Matt, When you create the initial helium atom, its name is "He". …
9:24 AM Ticket #16921 (Crash in event loop) created by chimerax-bug-report@…
[…]
8:31 AM Ticket #16920 (ChimeraX Model Joining) created by claire.nieder@…
[…]
6:39 AM Ticket #16919 (Crash drawing status bar) created by chimerax-bug-report@…
[…]
6:01 AM Ticket #16918 (Bug report segmentations) created by g.zanetti@…
[…] Screenshot 2025-02-20 at 13.55.46.png
4:03 AM Ticket #16917 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
3:55 AM Ticket #16916 ('MRCGrid' object has no attribute 'dicom_data') created by g.zanetti@…
[…]
12:32 AM Ticket #16915 (Crash opening PDB file) created by chimerax-bug-report@…
[…]

Feb 19, 2025:

7:46 PM Dev2025-2-24 edited by Tom Goddard
(diff)
7:21 PM Ticket #16914 (Crash in open-file dialog) created by xukui@…
[…]
2:50 PM Ticket #16913 (build atom names) created by matt.goff@…
[…]
11:58 AM Ticket #16906 (Tools gone after running Python script) closed by pett
fixed: I'm glad you were able to track down the problem! --Eric
11:41 AM Ticket #16912 (Crash on Mac waking from sleep) created by hrishikesh.das@…
[…]
11:21 AM Ticket #16904 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by Tom Goddard
nonchimerax: Graphics driver problem. Ancient ATI Radeon HD 4300/4500 Series from 2008.
9:57 AM Ticket #16911 (Intermittent "Permission denied" writing commands history temp file) closed by pett
duplicate
9:56 AM Ticket #16910 (Intermittent "Permission denied" writing commands history temp file) closed by pett
duplicate
9:55 AM Ticket #16909 (Intermittent "Permission denied" writing commands history temp file) closed by pett
duplicate
9:54 AM Ticket #16908 (Intermittent "Permission denied" writing temp commands history file) closed by pett
can't reproduce: Anti-virus software interference?
9:38 AM Ticket #16907 (Crash opening mmCIF) closed by pett
can't reproduce
9:31 AM Ticket #16905 (Hang after selection) closed by pett
can't reproduce
9:25 AM Ticket #16901 (MemoryError opening MD trajectory) closed by pett
limitation
9:22 AM Ticket #16900 (Crash getting secondary structure ID) closed by pett
can't reproduce
9:22 AM Ticket #16911 (Intermittent "Permission denied" writing commands history temp file) created by chimerax-bug-report@…
[…]
9:19 AM Ticket #16910 (Intermittent "Permission denied" writing commands history temp file) created by chimerax-bug-report@…
[…]
9:19 AM Ticket #16909 (Intermittent "Permission denied" writing commands history temp file) created by chimerax-bug-report@…
[…]
9:19 AM Ticket #16908 (Intermittent "Permission denied" writing temp commands history file) created by chimerax-bug-report@…
[…]
9:09 AM Ticket #16898 (Crash on Mac waking from sleep) closed by pett
duplicate
7:52 AM Ticket #16907 (Crash opening mmCIF) created by chimerax-bug-report@…
[…]
7:38 AM Ticket #16906 (Tools gone after running Python script) created by cuhkliyanxun@…
[…]
4:43 AM Ticket #16905 (Hang after selection) created by chimerax-bug-report@…
[…]

Feb 18, 2025:

10:24 PM Ticket #16904 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by chimerax-bug-report@…
[…]
10:05 PM Ticket #16903 (Allow homolog chains with different residue numbering to be associated ...) created by Willow.Coyote-Maestas@…
Willow would like to associate mutation scores with homologous …
10:02 PM Ticket #16902 (Allow mutation scores to be associated with multiple chains) closed by Tom Goddard
fixed: Done. The "mutationscores structure" command now takes one or more …
9:53 PM Ticket #16902 (Allow mutation scores to be associated with multiple chains) created by Willow.Coyote-Maestas@…
Willow wants to be able to associate a set of mutation scores with …
8:29 PM Ticket #16901 (MemoryError opening MD trajectory) created by chimerax-bug-report@…
[…]
6:58 PM Ticket #16900 (Crash getting secondary structure ID) created by chimerax-bug-report@…
[…]
3:08 PM Ticket #16899 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]
2:16 PM Ticket #16898 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
1:28 PM Ticket #16897 (Crash on Mac waking from sleep) closed by pett
duplicate
1:23 PM Ticket #16897 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
1:21 PM Ticket #16896 (Crash in event loop releasing memory) closed by pett
can't reproduce
1:13 PM Ticket #16895 (defattr re-registration conflict) closed by pett
duplicate: Fixed on 4/4/24
1:03 PM Ticket #16894 (Crash on Mac waking from sleep) closed by pett
duplicate
12:01 PM Ticket #16893 (Crash in event loop) closed by pett
can't reproduce: Has some similarities to #16881 since both tickets used 1r1a, though …
12:01 PM Ticket #16892 (Graphics crash in glBufferSubData, macOS 14.1.1, M1 GPU) closed by Tom Goddard
nonchimerax: Unusual graphics crash in Mac M1 OpenGL driver. Does not appear large …
11:55 AM Ticket #16884 (glUniform4fv: invalid operation) closed by Tom Goddard
can't reproduce: OpenGL error drawing selection outline. Windows, Intel graphics, …
11:52 AM Ticket #16889 (MatchMaker: 'NoneType' object has no attribute 'setChecked') closed by pett
duplicate
11:51 AM Ticket #16888 (Render By Attribute: switching attributes does not preserve marker radius) closed by pett
duplicate: Duplicate of #16536
11:50 AM Ticket #16885 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: When you reported this ChimeraX crash it explained in the Report a Bug …
11:48 AM Ticket #16887 (glDrawBuffer: invalid operation) closed by Tom Goddard
can't reproduce: Possible X windows remote display problem.
11:44 AM Ticket #16886 (Opening trajectory: not enough memory) closed by pett
limitation
11:40 AM Ticket #16883 (Crash getting missing-structure pseudobonds while deleting atoms) closed by pett
duplicate
11:27 AM Ticket #16881 (Crash in event loop) closed by pett
can't reproduce: User didn't do much: opened a structure and showed a sequence. Doing …
11:21 AM Ticket #16876 (Crash in swap_buffers) closed by Tom Goddard
can't reproduce: Graphics driver crash. Windows Nvidia RTX 3080 with driver version …
11:17 AM Ticket #16880 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
11:11 AM Ticket #16879 (Crash getting missing-structure pseudobonds while deleting atoms) closed by pett
can't reproduce
11:11 AM Ticket #16875 (Nothing shown in graphics window) closed by Tom Goddard
nonchimerax: You are right that the black screen is because of a problem with your …
11:02 AM Ticket #16878 (Crash in chem_group on Windows) closed by pett
can't reproduce
10:53 AM Ticket #16877 (Crash in chem_group on Windows) closed by pett
can't reproduce
10:32 AM Ticket #16874 (read_xtc failure; return code 7) closed by pett
can't reproduce
10:15 AM Dev2025-2-24 created by Tom Goddard
10:14 AM 2025-2-20 edited by Tom Goddard
(diff)
10:14 AM 2025-2-20 created by Tom Goddard
10:13 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:12 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:59 AM Ticket #16873 (Crash showing dock widget) closed by pett
can't reproduce
9:58 AM Ticket #16896 (Crash in event loop releasing memory) created by chimerax-bug-report@…
[…]
9:36 AM Ticket #16871 (Crash on windows opening file or accessing Structure.session) closed by pett
duplicate
9:32 AM Ticket #16895 (defattr re-registration conflict) created by chimerax-bug-report@…
[…]
9:28 AM Ticket #16870 (Crash on windows opening file or accessing Structure.session) closed by pett
can't reproduce: Not sure the stack trace stuff is helping that much on Windows.
9:18 AM Ticket #16894 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
9:14 AM Ticket #16869 (Illegal SDF file) closed by pett
not a bug
8:58 AM Ticket #16866 (Command history: No space left on device) closed by pett
nonchimerax
8:49 AM Ticket #16863 (Crash processing mouse click) closed by pett
can't reproduce
8:37 AM Ticket #16893 (Crash in event loop) created by chimerax-bug-report@…
[…]
8:10 AM Ticket #16892 (Graphics crash in glBufferSubData, macOS 14.1.1, M1 GPU) created by chimerax-bug-report@…
[…]
7:44 AM Ticket #16891 (Possible truncated session file) created by bhatnabi@…
[…]
7:42 AM Ticket #16890 (Possible truncated session file) created by chimerax-bug-report@…
[…]
7:00 AM Ticket #16889 (MatchMaker: 'NoneType' object has no attribute 'setChecked') created by chimerax-bug-report@…
[…]
6:53 AM Ticket #16888 (Render By Attribute: switching attributes does not preserve marker radius) created by chimerax-bug-report@…
[…]
6:50 AM Ticket #16887 (glDrawBuffer: invalid operation) created by chimerax-bug-report@…
[…]
6:31 AM Ticket #16886 (Opening trajectory: not enough memory) created by chimerax-bug-report@…
[…]
6:30 AM Ticket #16885 (Crash on Mac waking from sleep) created by weilong.zhao@…
[…]
2:56 AM Ticket #16884 (glUniform4fv: invalid operation) created by chimerax-bug-report@…
[…]
2:05 AM Ticket #16883 (Crash getting missing-structure pseudobonds while deleting atoms) created by chimerax-bug-report@…
[…]
1:25 AM Ticket #16882 (ArtiaX: self.atoms.displays = mask; Values array length does not match ...) created by chimerax-bug-report@…
[…]

Feb 17, 2025:

3:49 PM Ticket #16881 (Crash in event loop) created by chimerax-bug-report@…
[…]
9:48 AM Ticket #16880 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
6:27 AM Ticket #16879 (Crash getting missing-structure pseudobonds while deleting atoms) created by chimerax-bug-report@…
[…]
4:09 AM Ticket #16878 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]
4:08 AM Ticket #16877 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]
3:52 AM Ticket #16876 (Crash in swap_buffers) created by chimerax-bug-report@…
[…]

Feb 16, 2025:

2:16 PM Ticket #16875 (Nothing shown in graphics window) created by michael.r.rufrano@…
[…]
7:12 AM Ticket #16874 (read_xtc failure; return code 7) created by chimerax-bug-report@…
[…]

Feb 15, 2025:

1:33 PM Ticket #16873 (Crash showing dock widget) created by chimerax-bug-report@…
[…]
1:22 PM Ticket #16872 (Opening sessions) created by leobets25@…
[…]
5:47 AM Ticket #16871 (Crash on windows opening file or accessing Structure.session) created by chimerax-bug-report@…
[…]
5:47 AM Ticket #16870 (Crash on windows opening file or accessing Structure.session) created by chimerax-bug-report@…
[…]

Feb 14, 2025:

7:53 PM Ticket #16869 (Illegal SDF file) created by chimerax-bug-report@…
[…]
6:12 PM Ticket #16868 (AtomicShapeDrawing selection sometimes inaccurate) created by pett
If an AtomicShapeDrawing is added for selected atoms, the shape does …
6:04 PM Ticket #16867 (ISOLDE not finding OpenMM 8.0) created by chimerax-bug-report@…
[…]
1:37 PM Ticket #16866 (Command history: No space left on device) created by chimerax-bug-report@…
[…]
12:54 PM Ticket #16865 (Make Acer SpatialLabs View Pro 27" 3D display work with OpenXR) created by Tom Goddard
Krish Raman of Biocryst has glasses-free Acer SpatialLabs View Pro 27" …
12:44 PM Ticket #16864 (Improve usability of Sony Spatial Reality 3D display with OpenXR) created by gregdp@…
Greg Pintilie has two glasses-free 3D flat-panel Sony Spatial Reality …
12:39 PM Ticket #16863 (Crash processing mouse click) created by chimerax-bug-report@…
[…]
11:48 AM Dev2025-2-17 edited by pett
(diff)
11:34 AM Dev2025-2-17 edited by pett
(diff)
11:26 AM Ticket #16862 (Crash showing/using Selection Inspector) closed by pett
can't reproduce
11:23 AM Ticket #16861 (MemoryError opening mmCIF file) closed by pett
duplicate: Hi Gabriela, Thanks for reporting this problem. It is fixed in more …
11:19 AM Ticket #16862 (Crash showing/using Selection Inspector) created by chimerax-bug-report@…
[…]
11:18 AM Ticket #16858 (Crash moving window between screens) closed by Tom Goddard
duplicate
11:16 AM Ticket #16860 (Crash drawing scene) closed by Tom Goddard
can't reproduce: Crashed in OpenGL. Possible remote display or graphics driver issue.
11:10 AM Ticket #16859 (UniProt ID mapping error) closed by pett
nonchimerax: UniProt web service is down for maintenance
10:59 AM Ticket #16857 (Crash moving window between screens) closed by Tom Goddard
duplicate
10:58 AM Ticket #16856 (Crash after "alphafold predict") closed by Tom Goddard
can't reproduce: On Windows the Python faulthandler output is confusing often showing …
10:02 AM Ticket #16861 (MemoryError opening mmCIF file) created by gsr.gabriela.sanchezruiz@…
[…]
9:50 AM Ticket #16855 (Crash fetching from Toolshed) closed by pett
duplicate
8:56 AM Ticket #16860 (Crash drawing scene) created by chimerax-bug-report@…
[…]
1:16 AM Ticket #16859 (UniProt ID mapping error) created by chimerax-bug-report@…
[…]
12:44 AM Ticket #16858 (Crash moving window between screens) created by chimerax-bug-report@…
[…]

Feb 13, 2025:

11:24 PM Ticket #16857 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
7:27 PM Ticket #16856 (Crash after "alphafold predict") created by chimerax-bug-report@…
[…]
5:33 PM Ticket #16855 (Crash fetching from Toolshed) created by chimerax-bug-report@…
[…]
5:24 PM ChangeLog edited by Elaine Meng
(diff)
3:15 PM 2025-2-13 edited by Tom Goddard
(diff)
3:11 PM Ticket #16849 ('AtomicStructure' object has no attribute '_alt_loc_changes_handler') closed by pett
duplicate: Hi Fabian, Thanks for reporting this problem. It has been fixed in …
3:01 PM Ticket #16854 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
2:42 PM Ticket #16853 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Dmitrii, Thanks for reporting this problem. It has been fixed in …
2:38 PM Ticket #152 (Proportional representation of missing structure) closed by pett
fixed: Well, you can label them with their numeric length now. Seems like …
1:28 PM Ticket #16851 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
1:28 PM Ticket #16852 (Crash moving window between screens) closed by Tom Goddard
duplicate
1:27 PM Ticket #16850 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
12:14 PM 2025-2-13 edited by Elaine Meng
(diff)
12:13 PM 2025-2-13 edited by Elaine Meng
(diff)
9:36 AM Ticket #16847 ('ArrayGridData' object has no attribute 'dicom_data') closed by pett
duplicate
9:34 AM Ticket #16846 (AddH: More than 2 coplanar positions specified) closed by pett
nonchimerax: Bad PDB file
8:21 AM Ticket #16854 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
8:13 AM Ticket #16853 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by dmitrii.shiriaev@…
[…]
7:55 AM Ticket #16852 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
6:41 AM Ticket #16851 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
2:21 AM Ticket #16850 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Feb 12, 2025:

11:29 PM Ticket #16849 ('AtomicStructure' object has no attribute '_alt_loc_changes_handler') created by fabian.bumbak@…
[…]
6:18 PM Ticket #16848 (Update from numpy 1 to numpy 2.) created by Tom Goddard
This ticket is to track whatever we find about incompatibilities …
5:54 PM Ticket #16520 (Ribbon: Array argument has non-numeric values) reopened by Zach Pearson
I actually did reproduce this on Windows.
2:56 PM Ticket #16847 ('ArrayGridData' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
2:07 PM Ticket #16843 (Dock Prep: filling out ALA: NoResidueRotamersError) closed by pett
fixed: Though I can't reproduce the problem, I believe this fixes it: …
12:32 PM Ticket #16842 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
12:31 PM Ticket #16841 (Crash on exit) closed by Tom Goddard
can't reproduce: Crashed on exit in PyQt in QOpenGLContext::destroy(). PyQt is known …
12:28 PM Ticket #16840 (Restore session: MemoryError in grid_data_from_state) closed by Tom Goddard
limitation: As the traceback says, error trying to allocate 325 Mbytes. Machine …
12:25 PM Ticket #16839 (Crash moving window between screens) closed by Tom Goddard
duplicate
11:50 AM Ticket #16846 (AddH: More than 2 coplanar positions specified) created by chimerax-bug-report@…
[…]
11:21 AM Ticket #16845 (Restore new session in old ChimeraX) closed by pett
limitation
11:19 AM Ticket #16520 (Ribbon: Array argument has non-numeric values) closed by Zach Pearson
can't reproduce: I went to the AlphaFold website and downloaded that entry's PDB file, …
10:09 AM Ticket #16845 (Restore new session in old ChimeraX) created by chimerax-bug-report@…
[…]
9:21 AM Ticket #16844 (Crash on Mac waking from sleep) closed by pett
duplicate
7:59 AM Ticket #16844 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
6:29 AM Ticket #16843 (Dock Prep: filling out ALA: NoResidueRotamersError) created by chimerax-bug-report@…
[…]
6:19 AM Ticket #16842 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
4:33 AM Ticket #16841 (Crash on exit) created by wangchu@…
[…]
1:03 AM Ticket #16518 (Session save: '/opt/homebrew/opt/lz4/lib/liblz4.1.dylib' (no such file)) closed by Zach Pearson
fixed: This was caused by using a hand-rolled lz4 wheel before a Mac ARM …

Feb 11, 2025:

7:38 PM Ticket #16840 (Restore session: MemoryError in grid_data_from_state) created by chimerax-bug-report@…
[…]
12:54 PM Ticket #16839 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
12:01 PM Dev2025-2-17 created by Tom Goddard
12:01 PM 2025-2-13 created by Tom Goddard
11:59 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:46 AM Ticket #16836 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
9:13 AM Ticket #16838 (No space left on device) closed by pett
nonchimerax
9:09 AM Ticket #16838 (No space left on device) created by chimerax-bug-report@…
[…]
9:02 AM Ticket #16835 (Crash in python_instances_of_class) closed by pett
duplicate
8:25 AM Ticket #16837 (Crash at startup) created by chimerax-bug-report@…
[…]

Feb 10, 2025:

8:33 PM Ticket #16836 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
5:47 PM Dev2025-2-10 edited by Tom Goddard
(diff)
5:11 PM Ticket #16835 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
4:09 PM Ticket #16834 (ViewDockX tool page in app but not on web site) created by Mitch Murphy
[…]
2:37 PM Ticket #16833 ("devel" help page) created by goddard@…
[…]
2:33 PM Ticket #16831 (Crash moving window between screens) closed by Tom Goddard
duplicate: This crash is due to Qt window toolkit bug on Mac with multiple …
1:13 PM Ticket #16832 (Find Cavities crash) closed by pett
duplicate
1:04 PM Ticket #16832 (Find Cavities crash) created by chimerax-bug-report@…
[…]
12:55 PM Ticket #16831 (Crash moving window between screens) created by jflecken@…
[…]
12:15 PM Ticket #16830 (Toolshed not providing uninstalled info) created by pett
The toolshed in the daily build is not providing info about …
11:30 AM ChangeLog edited by Elaine Meng
(diff)
11:18 AM Ticket #16805 (Selection intersection problem) closed by Tom Goddard
can't reproduce: Ok
11:06 AM Ticket #16796 (Spin movie button does not work) closed by Tom Goddard
not a bug: Our older program Chimera had an animation tool but that does not …
10:54 AM Ticket #16815 (glTexImage2D: Not enough memory) closed by Tom Goddard
nonchimerax: The error means OpenGL graphics ran out of memory. It was just trying …
10:46 AM Ticket #16819 (Gaussian cube: could not convert string to float) closed by Tom Goddard
nonchimerax: Bad Gaussian cube file. Gaussian cube format is supposed to have …
10:32 AM Ticket #16827 (Graphics crash, macOS 15.1, Intel Iris Plus Graphics 655) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
10:30 AM Ticket #16829 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
10:29 AM Ticket #16826 (Crash moving window between screens) closed by Tom Goddard
duplicate
10:28 AM Ticket #16825 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
10:24 AM Ticket #16828 (Crash on Mac waking from sleep) closed by pett
duplicate
10:08 AM Ticket #16824 (Crash in chem_group) closed by pett
can't reproduce
10:06 AM Ticket #16823 (Crash in chem_group) closed by pett
can't reproduce: Similar to several others (e.g. #16799) but haven't been able to …
10:03 AM Ticket #16822 (Crash in python_instances_of_class) closed by pett
duplicate
10:00 AM Ticket #16821 (Crash on exit) closed by pett
can't reproduce
10:00 AM Ticket #16829 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
9:58 AM Ticket #16820 (Crash in event loop) closed by pett
can't reproduce
9:52 AM Ticket #16818 (Crash in event loop) closed by pett
can't reproduce
9:51 AM Ticket #16817 (Crash in event loop) closed by pett
can't reproduce: Possibly during "toolshed show"
9:49 AM Ticket #16816 (Crash during mouse drag) closed by pett
can't reproduce
9:38 AM Ticket #16828 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
9:32 AM Ticket #16814 (Crash in event loop) closed by pett
can't reproduce
9:30 AM Ticket #16813 (Crash in event loop) closed by pett
can't reproduce: Possibly as part of "toolshed show"
9:29 AM Ticket #16827 (Graphics crash, macOS 15.1, Intel Iris Plus Graphics 655) created by chimerax-bug-report@…
[…]
8:21 AM Ticket #16826 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
7:45 AM Ticket #16825 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Feb 9, 2025:

9:40 PM Ticket #16824 (Crash in chem_group) created by chimerax-bug-report@…
[…]
9:39 PM Ticket #16823 (Crash in chem_group) created by chimerax-bug-report@…
[…]
9:05 PM Ticket #16822 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
8:20 PM Ticket #16821 (Crash on exit) created by chimerax-bug-report@…
[…]
2:51 PM Ticket #16820 (Crash in event loop) created by chimerax-bug-report@…
[…]
11:56 AM Ticket #16819 (Gaussian cube: could not convert string to float) created by chimerax-bug-report@…
[…]
9:53 AM Ticket #16818 (Crash in event loop) created by chimerax-bug-report@…
[…]
9:50 AM Ticket #16817 (Crash in event loop) created by chimerax-bug-report@…
[…]
8:51 AM Ticket #16816 (Crash during mouse drag) created by chimerax-bug-report@…
[…]

Feb 8, 2025:

4:33 AM Ticket #16815 (glTexImage2D: Not enough memory) created by philipp.milkereit@…
[…]
4:06 AM Ticket #16814 (Crash in event loop) created by chimerax-bug-report@…
[…]
3:48 AM Ticket #16813 (Crash in event loop) created by chimerax-bug-report@…
[…]

Feb 7, 2025:

6:43 PM Ticket #16803 (Graphics crash, macOS 13.7.1, M2 GPU) closed by Tom Goddard
nonchimerax: Duplicate of #16802
6:43 PM Ticket #16802 (Graphics crash, macOS 13.7.1, M2 GPU) closed by Tom Goddard
nonchimerax: Crash in Apple M2 graphics driver displaying large map.
5:05 PM Ticket #16812 (NameError: name 'side' is not defined) closed by pett
invalid
5:04 PM Ticket #16812 (NameError: name 'side' is not defined) created by pett
[…]
4:40 PM Ticket #16801 ('MRCGrid' object has no attribute 'dicom_data') closed by Zach Pearson
duplicate: Should be fixed in daily builds.
4:39 PM Ticket #16459 (Crash importing matplotlib via DICOM) closed by Zach Pearson
fixed: See #16806
4:39 PM Ticket #16806 (Problem in matplotlib called from segmentations) closed by Zach Pearson
fixed: Took the matplotlib import out of that file.
11:09 AM Ticket #16811 (Crash hiding dock widget) closed by pett
can't reproduce
10:55 AM Ticket #16811 (Crash hiding dock widget) created by chimerax-bug-report@…
[…]
9:45 AM Ticket #16810 (Crash getting StructureSeq.structure) closed by pett
can't reproduce: Possibly fixed by recent changes in atomic (copied Structure seq …
9:37 AM Ticket #16809 (Crash in event loop) closed by pett
can't reproduce
9:33 AM Ticket #16808 (Find Cavities crash) closed by pett
duplicate
9:32 AM Ticket #16807 (Find Cavities crash) closed by pett
duplicate
8:58 AM Ticket #16810 (Crash getting StructureSeq.structure) created by chimerax-bug-report@…
[…]
7:56 AM Ticket #16809 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:28 AM Ticket #16808 (Find Cavities crash) created by chimerax-bug-report@…
[…]
6:26 AM Ticket #16807 (Find Cavities crash) created by chimerax-bug-report@…
[…]
5:19 AM Ticket #16806 (Problem in matplotlib called from segmentations) created by ariel.talavera@…
[…]

Feb 6, 2025:

5:55 PM Ticket #16805 (Selection intersection problem) created by isaphan@…
[…]
3:55 PM Ticket #16799 (Crash in chem_group) closed by pett
can't reproduce: Distilled the above into a .cxc file, which worked on Mac and Windows.
3:36 PM Ticket #16804 (UniProt feature not shown in daily build) closed by pett
fixed: Fix: …
3:25 PM Ticket #16793 (Crash in chem_group) closed by pett
can't reproduce: Condensed the log into a .cxc file, which worked fine on both Mac and …
3:11 PM Ticket #16804 (UniProt feature not shown in daily build) created by Elaine Meng
e.g.: ldlr_human cah1_human
10:49 AM Ticket #16800 (Restore new session in old ChimeraX) closed by pett
limitation: Hi Alejandro, Thanks for reporting this problem. The "Atomic" bundle …
10:42 AM Ticket #16798 (Crash in chem_group while executing script) closed by pett
duplicate
10:41 AM Ticket #16797 (Crash in chem_group while executing script) closed by pett
can't reproduce
10:37 AM Ticket #16795 (Crash in chem_group) closed by pett
can't reproduce
10:33 AM Ticket #16794 (Find Cavities crash) closed by pett
duplicate
10:31 AM Ticket #16803 (Graphics crash, macOS 13.7.1, M2 GPU) created by chimerax-bug-report@…
[…]
9:42 AM Ticket #16802 (Graphics crash, macOS 13.7.1, M2 GPU) created by chimerax-bug-report@…
[…]
9:12 AM Ticket #16801 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
7:02 AM Ticket #16800 (Restore new session in old ChimeraX) created by heuck@…
[…]
5:56 AM Ticket #16799 (Crash in chem_group) created by chimerax-bug-report@…
[…]
5:07 AM Ticket #16798 (Crash in chem_group while executing script) created by chimerax-bug-report@…
[…]
5:05 AM Ticket #16797 (Crash in chem_group while executing script) created by chimerax-bug-report@…
[…]
5:04 AM Ticket #16796 (Spin movie button does not work) created by xblanche@…
[…]
4:42 AM Ticket #16795 (Crash in chem_group) created by chimerax-bug-report@…
[…]
2:17 AM Ticket #16794 (Find Cavities crash) created by chimerax-bug-report@…
[…]
12:58 AM Ticket #16793 (Crash in chem_group) created by chimerax-bug-report@…
[…]

Feb 5, 2025:

7:16 PM Ticket #16792 (Read Boltz-1 .npz PAE files) closed by Tom Goddard
fixed: Done. The AlphaFold Error Plot tool now will find .npz PAE files for …
7:09 PM Ticket #16792 (Read Boltz-1 .npz PAE files) created by goddard@…
[…]
6:32 PM Ticket #16791 (Windows Subsystem for Linux crash at startup: malloc corruption) created by jobichenc@…
[…] chimerabug.txt
5:21 PM Dev2025-2-3 edited by pett
(diff)
1:56 PM Ticket #16790 (SEQCROW: various errors reading possible ORCA output) created by chimerax-bug-report@…
[…]
12:20 PM Ticket #16789 (Crash in bug reporter while available bundle info being fetched from ...) created by chimerax-bug-report@…
[…]
11:20 AM Ticket #16786 (Graphics hardware encountered an error and was reset) closed by Tom Goddard
nonchimerax: The ChimeraX Report a Bug dialog that you used gave the following info …
10:04 AM Ticket #16788 (ISOLDE: too many hydrogens for SER) created by chimerax-bug-report@…
[…]
10:04 AM Ticket #16787 (Crash moving window between screens) closed by pett
duplicate
10:00 AM Ticket #16785 (Crash in python_instances_of_class) closed by pett
duplicate
9:59 AM Ticket #16784 (Problem installing Clipper) closed by pett
not a bug: Hi Jobichen, The version of ISOLDE/Clipper you are trying to install …
9:54 AM Ticket #16783 (Session restore: LZ4F_decompress failed) closed by pett
duplicate: Duplicate of #16129 (which is still open)
9:51 AM Ticket #16782 (Crash opening PDB file) closed by pett
can't reproduce
5:05 AM Ticket #16787 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
4:29 AM Ticket #16786 (Graphics hardware encountered an error and was reset) created by laura.lp.iq@…
[…]

Feb 4, 2025:

9:05 PM Ticket #16785 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
8:45 PM Ticket #16784 (Problem installing Clipper) created by Jobichenc@…
[…]
6:36 PM Ticket #16781 (Crash moving window between screens) closed by Tom Goddard
duplicate
6:35 PM DeveloperMeetings edited by Tom Goddard
(diff)
6:34 PM Ticket #16783 (Session restore: LZ4F_decompress failed) created by chimerax-bug-report@…
[…]
6:34 PM DeveloperMeetings edited by Tom Goddard
(diff)
6:33 PM DeveloperMeetings edited by Tom Goddard
(diff)
6:32 PM DeveloperMeetings edited by Tom Goddard
(diff)
6:32 PM Ticket #16777 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
6:31 PM Dev2025-2-10 created by Tom Goddard
6:29 PM 2025-2-6 edited by Tom Goddard
(diff)
6:28 PM 2025-2-6 created by Tom Goddard
6:26 PM DeveloperMeetings edited by Tom Goddard
(diff)
6:04 PM Ticket #16769 (Crash on Mac waking from sleep) closed by Tom Goddard
can't reproduce: Appears Qt was doing a window resize. This is not the usual crash …
5:58 PM Ticket #16766 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: The message in the Report a Bug panel (shown in red) when you reported …
5:56 PM Ticket #16782 (Crash opening PDB file) created by chimerax-bug-report@…
[…]
4:18 PM Ticket #8967 (Various TCIA issues) closed by Zach Pearson
fixed: The SEG and CT should be aligned in today's builds.
4:08 PM Ticket #9468 (Opening TCIA NM fails) closed by Zach Pearson
fixed: I wish I knew why, but this opens in the daily build.
4:03 PM Ticket #9469 (TCIA KO image fails to open) closed by Zach Pearson
fixed: Fixed for the same reason as #9437
3:44 PM Ticket #8698 (Some DICOM files only appear using extreme threshold values) closed by Zach Pearson
invalid: Note to self: in the future it would be good to include which specific …
3:35 PM Ticket #16580 (Memory leak) closed by pett
fixed: Reverted to the older non-trigger/handler version of the code. Fix: …
3:31 PM Ticket #9437 (DICOM: bits_allocated is None) closed by Zach Pearson
fixed: Should be fixed in tomorrow's build. Before, the test for whether to …
1:29 PM Ticket #16780 (Crash moving window between screens) closed by pett
duplicate
1:28 PM Ticket #16779 (Crash closing window/tool) closed by pett
wontfix: Looking at the log, I'm guessing the user was closing an empty …
1:21 PM Ticket #16778 (Crash fetching from Toolshed) closed by pett
duplicate
1:20 PM Ticket #16758 (Crash initializing PyOpenGL) closed by Tom Goddard
duplicate: Duplicate of #16760
1:19 PM Ticket #16776 (Crash in event loop) closed by pett
can't reproduce: Either during or right after saving a session.
1:18 PM Ticket #16760 (Crash initializing PyOpenGL) closed by Tom Goddard
nonchimerax: The crash happens in line "import OpenGL.GL" importing the PyOpenGL …
1:16 PM Ticket #16775 (Crash fetching from Toolshed) closed by pett
duplicate
1:14 PM Ticket #16774 (ArtiaX: arrays used as indices must be of integer (or boolean) typ) closed by pett
duplicate: Old version of ArtiaX
7:50 AM Ticket #16781 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
7:03 AM Ticket #16780 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
6:31 AM Ticket #16779 (Crash closing window/tool) created by chimerax-bug-report@…
[…]
12:28 AM Ticket #16778 (Crash fetching from Toolshed) created by chimerax-bug-report@…
[…]

Feb 3, 2025:

6:00 PM Ticket #16777 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
4:26 PM Ticket #16776 (Crash in event loop) created by chimerax-bug-report@…
[…]
4:02 PM Ticket #16775 (Crash fetching from Toolshed) created by chimerax-bug-report@…
[…]
3:48 PM Ticket #16774 (ArtiaX: arrays used as indices must be of integer (or boolean) typ) created by chimerax-bug-report@…
[…]
2:51 PM Ticket #16773 (ChimeraX bug report submission) created by Zach Pearson
[…]
2:45 PM Ticket #16335 (Segmentations: KeyError deleting VolumeImage) closed by Zach Pearson
fixed: There's two issues here. One is the out of bounds error when creating …
2:16 PM Ticket #15576 (Crash closing lung data) closed by Zach Pearson
fixed: I think it's most likely that this was a crash from closing the …
1:35 PM Ticket #16772 (OpenGL on Ubuntu doesn't like the raycasting shader) closed by Zach Pearson
fixed: Fixed in …
1:30 PM Ticket #16771 (Crash on Mac waking from sleep) closed by pett
duplicate
1:18 PM Ticket #16772 (OpenGL on Ubuntu doesn't like the raycasting shader) created by Zach Pearson
[…]
12:29 PM Ticket #16771 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
11:12 AM Ticket #16770 (Restore new session in old ChimeraX) closed by pett
limitation
11:07 AM Ticket #16768 (ArtiaX: arrays used as indices must be of integer (or boolean) type) closed by pett
duplicate
11:01 AM Ticket #16767 (Can't save session because NewerVersionQuery not listed) closed by pett
duplicate: Hi Jiaxuan, Thanks for reporting this problem. It has been fixed in …
10:48 AM Ticket #16765 (Crash fetching from Toolshed) closed by pett
duplicate
10:46 AM Ticket #16764 (Crash in event loop) closed by pett
can't reproduce
10:44 AM Ticket #16763 (Crash browsing for folder name) closed by pett
can't reproduce
10:38 AM Ticket #16762 (Crash moving window between screens) closed by pett
duplicate
10:37 AM Ticket #16761 (Crash in garbage collection) closed by pett
duplicate
10:34 AM Ticket #16759 (Non-UTF-8 settings file) closed by pett
can't reproduce: Don't know how it got corrupted.
10:31 AM Ticket #16757 (Crash running save dialog) closed by pett
can't reproduce
10:28 AM Ticket #16756 (Crash in py_instance) closed by pett
duplicate
10:22 AM Ticket #16755 (Crash fetching from Toolshed) closed by pett
duplicate: Duplicate of #16707 Again, the user did a ton of work before the …
10:03 AM Ticket #16770 (Restore new session in old ChimeraX) created by chimerax-bug-report@…
[…]
9:30 AM Ticket #16769 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
8:16 AM Ticket #16768 (ArtiaX: arrays used as indices must be of integer (or boolean) type) created by chimerax-bug-report@…
[…]
7:59 AM Ticket #16767 (Can't save session because NewerVersionQuery not listed) created by jiaxuan.cheng@…
[…]
1:40 AM Ticket #16766 (Crash on Mac waking from sleep) created by helen.duyvesteyn@…
[…]
12:49 AM Ticket #16765 (Crash fetching from Toolshed) created by chimerax-bug-report@…
[…]

Feb 2, 2025:

6:42 PM Ticket #16764 (Crash in event loop) created by chimerax-bug-report@…
[…]

Feb 1, 2025:

11:47 PM Ticket #16763 (Crash browsing for folder name) created by chimerax-bug-report@…
[…]
11:37 PM Ticket #16762 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
7:03 AM Ticket #16761 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
2:37 AM Ticket #16760 (Crash initializing PyOpenGL) created by baymoscow2018@…
[…]
2:36 AM Ticket #16759 (Non-UTF-8 settings file) created by chimerax-bug-report@…
[…]
2:11 AM Ticket #16758 (Crash initializing PyOpenGL) created by chimerax-bug-report@…
[…]
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