![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 9 months ago
Closed 9 months ago
#16998 closed defect (duplicate)
Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.15.7-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x0000000110859dc0 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [25092]
Path: /Applications/ChimeraX-1.6.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.6.1 (1.6.1.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [25092]
User ID: 501
Date/Time: 2025-02-28 22:45:55.539 -0500
OS Version: Mac OS X 10.15.7 (19H2026)
Report Version: 12
Bridge OS Version: 8.3 (21P3049)
Anonymous UUID: 10DF5B59-7310-3E0A-D156-163B6256CA43
Sleep/Wake UUID: 17340FF2-E83A-4E2E-AF1B-73DB5C9C251D
Time Awake Since Boot: 200000 seconds
Time Since Wake: 12000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000018
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x18:
-->
__TEXT 000000010cbc5000-000000010cbc6000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX-1.6.1.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff6ce0832a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff6cec4e60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff6cd1f93e raise + 26
3 libsystem_platform.dylib 0x00007fff6ceb95fd _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libqmacstyle.dylib 0x000000012bb3dbba 0x12bb32000 + 48058
6 libqmacstyle.dylib 0x000000012bb47708 0x12bb32000 + 87816
7 QtWidgets 0x000000011d1bb125 QCommonStyle::drawControl(QStyle::ControlElement, QStyleOption const*, QPainter*, QWidget const*) const + 1845
8 libqmacstyle.dylib 0x000000012bb441fc 0x12bb32000 + 74236
9 QtWidgets 0x000000011d2002db 0x11d140000 + 787163
10 QtWidgets 0x000000011d349e14 QTabBar::paintEvent(QPaintEvent*) + 1700
11 QtWidgets 0x000000011d19ad2e QWidget::event(QEvent*) + 1262
12 QtWidgets 0x000000011d349454 QTabBar::event(QEvent*) + 980
13 QtWidgets 0x000000011d14a9c7 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
14 QtWidgets 0x000000011d14b90c QApplication::notify(QObject*, QEvent*) + 508
15 QtWidgets.abi3.so 0x000000011cc99186 sipQApplication::notify(QObject*, QEvent*) + 230
16 QtCore 0x000000011a8ce12a QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
17 QtWidgets 0x000000011d18cfdd QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 3981
18 QtWidgets 0x000000011d194c1f QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 1007
19 QtWidgets 0x000000011d18d118 QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 4296
20 QtWidgets 0x000000011d194c1f QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 1007
21 QtWidgets 0x000000011d18d118 QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 4296
22 QtWidgets 0x000000011d194c1f QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 1007
23 QtWidgets 0x000000011d18d118 QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 4296
24 QtWidgets 0x000000011d194c1f QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 1007
25 QtWidgets 0x000000011d18d118 QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 4296
26 QtWidgets 0x000000011d194c1f QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 1007
27 QtWidgets 0x000000011d194ada QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 682
28 QtWidgets 0x000000011d194ada QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 682
29 QtWidgets 0x000000011d194ada QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 682
30 QtWidgets 0x000000011d194ada QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 682
31 QtWidgets 0x000000011d194ada QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 682
32 QtWidgets 0x000000011d194ada QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 682
33 QtWidgets 0x000000011d194ada QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 682
34 QtWidgets 0x000000011d194ada QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 682
35 QtWidgets 0x000000011d194ada QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 682
36 QtWidgets 0x000000011d194ada QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 682
37 QtWidgets 0x000000011d18d118 QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 4296
38 QtWidgets 0x000000011d1ad11d QWidgetRepaintManager::paintAndFlush() + 5085
39 QtWidgets 0x000000011d1ad3ff QWidgetRepaintManager::sync() + 255
40 QtWidgets 0x000000011d19af55 QWidget::event(QEvent*) + 1813
41 QtWidgets 0x000000011d2da1e4 QMainWindow::event(QEvent*) + 276
42 QtWidgets.abi3.so 0x000000011cbf580f sipQMainWindow::event(QEvent*) + 191
43 QtWidgets 0x000000011d14a9c7 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
44 QtWidgets 0x000000011d14b90c QApplication::notify(QObject*, QEvent*) + 508
45 QtWidgets.abi3.so 0x000000011cc99186 sipQApplication::notify(QObject*, QEvent*) + 230
46 QtCore 0x000000011a8ce12a QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
47 QtWidgets 0x000000011d1a9775 QWidgetRepaintManager::sendUpdateRequest(QWidget*, QWidgetRepaintManager::UpdateTime) + 629
48 QtWidgets 0x000000011d1a94a3 void QWidgetRepaintManager::markDirty(QRect const&, QWidget*, QWidgetRepaintManager::UpdateTime, QWidgetRepaintManager::BufferState) + 2163
49 QtWidgets 0x000000011d1b40f1 0x11d140000 + 475377
50 QtCore 0x000000011a91d5aa 0x11a860000 + 775594
51 QtGui 0x000000011d824c2d QWindowPrivate::emitScreenChangedRecursion(QScreen*) + 77
52 QtGui 0x000000011d81a9ca QScreen::~QScreen() + 682
53 QtGui 0x000000011d81aa3e QScreen::~QScreen() + 14
54 QtGui 0x000000011d82ebbc QWindowSystemInterface::handleScreenRemoved(QPlatformScreen*) + 28
55 libqcocoa.dylib 0x000000012a57b853 0x12a548000 + 211027
56 libqcocoa.dylib 0x000000012a579be8 0x12a548000 + 203752
57 libqcocoa.dylib 0x000000012a590fb2 0x12a548000 + 298930
58 QtCore 0x000000011a8dd894 QMetaMethod::invoke(QObject*, Qt::ConnectionType, QGenericReturnArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument) const + 1284
59 libqcocoa.dylib 0x000000012a594e62 0x12a548000 + 314978
60 com.apple.Foundation 0x00007fff362b5094 -[__NSObserver _doit:] + 296
61 com.apple.CoreFoundation 0x00007fff33c37a5f __CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 12
62 com.apple.CoreFoundation 0x00007fff33c379f3 ___CFXRegistrationPost1_block_invoke + 63
63 com.apple.CoreFoundation 0x00007fff33c37968 _CFXRegistrationPost1 + 372
64 com.apple.CoreFoundation 0x00007fff33c375d4 ___CFXNotificationPost_block_invoke + 80
65 com.apple.CoreFoundation 0x00007fff33c0772d -[_CFXNotificationRegistrar find:object:observer:enumerator:] + 1554
66 com.apple.CoreFoundation 0x00007fff33c06bd9 _CFXNotificationPost + 1351
67 com.apple.Foundation 0x00007fff36289096 -[NSNotificationCenter postNotificationName:object:userInfo:] + 59
68 com.apple.AppKit 0x00007fff31175f50 __67-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]_block_invoke + 669
69 com.apple.AppKit 0x00007fff30f5f6ee NSPerformVisuallyAtomicChange + 132
70 com.apple.AppKit 0x00007fff31175cad -[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:] + 69
71 com.apple.AppKit 0x00007fff311764e4 -[NSWindow _updateSettingsSendingScreenChangeNotification] + 167
72 com.apple.AppKit 0x00007fff312f1985 -[NSWindow _adjustWindowToScreen] + 1477
73 com.apple.AppKit 0x00007fff3131b06f -[NSWindow _displayChangedSoAdjustWindows:] + 105
74 com.apple.AppKit 0x00007fff319f8cb9 ___NSApplicationPerformScreenInvalidationReactions_block_invoke + 72
75 com.apple.AppKit 0x00007fff30f0125e -[NSApplication enumerateWindowsWithOptions:usingBlock:] + 274
76 com.apple.AppKit 0x00007fff319f7e99 _NSApplicationPerformScreenInvalidationReactions + 556
77 com.apple.AppKit 0x00007fff319f8c65 ___NSMainRunLoopPerformBlockInModes_block_invoke + 25
78 com.apple.CoreFoundation 0x00007fff33c41c2c __CFRUNLOOP_IS_CALLING_OUT_TO_A_BLOCK__ + 12
79 com.apple.CoreFoundation 0x00007fff33c41b74 __CFRunLoopDoBlocks + 379
80 com.apple.CoreFoundation 0x00007fff33c4106d __CFRunLoopRun + 2450
81 com.apple.CoreFoundation 0x00007fff33c4007e CFRunLoopRunSpecific + 462
82 com.apple.HIToolbox 0x00007fff328beaad RunCurrentEventLoopInMode + 292
83 com.apple.HIToolbox 0x00007fff328be7c5 ReceiveNextEventCommon + 584
84 com.apple.HIToolbox 0x00007fff328be569 _BlockUntilNextEventMatchingListInModeWithFilter + 64
85 com.apple.AppKit 0x00007fff30f073c9 _DPSNextEvent + 883
86 com.apple.AppKit 0x00007fff30f05c10 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
87 com.apple.AppKit 0x00007fff30ef791e -[NSApplication run] + 658
88 libqcocoa.dylib 0x000000012a55e753 0x12a548000 + 91987
89 QtCore 0x000000011a8d74b6 QEventLoop::exec(QFlags) + 486
90 QtCore 0x000000011a8ce725 QCoreApplication::exec() + 133
91 QtWidgets.abi3.so 0x000000011cd8554a meth_QApplication_exec(_object*, _object*) + 90
92 org.python.python 0x000000010cc4f71d cfunction_call + 125
93 org.python.python 0x000000010cc105b7 _PyObject_MakeTpCall + 359
94 org.python.python 0x000000010cce8e9c call_function + 876
95 org.python.python 0x000000010cce62a2 _PyEval_EvalFrameDefault + 25554
96 org.python.python 0x000000010cc10d28 function_code_fastcall + 104
97 org.python.python 0x000000010cc12d6a method_vectorcall + 202
98 org.python.python 0x000000010cce8e0c call_function + 732
99 org.python.python 0x000000010cce62a2 _PyEval_EvalFrameDefault + 25554
100 org.python.python 0x000000010cce9b03 _PyEval_EvalCode + 2611
101 org.python.python 0x000000010cc10cb1 _PyFunction_Vectorcall + 289
102 org.python.python 0x000000010cce8e0c call_function + 732
103 org.python.python 0x000000010cce634b _PyEval_EvalFrameDefault + 25723
104 org.python.python 0x000000010cce9b03 _PyEval_EvalCode + 2611
105 org.python.python 0x000000010ccdfdab PyEval_EvalCode + 139
106 org.python.python 0x000000010ccdcc12 builtin_exec + 626
107 org.python.python 0x000000010cc4f023 cfunction_vectorcall_FASTCALL + 195
108 org.python.python 0x000000010cce8e0c call_function + 732
109 org.python.python 0x000000010cce634b _PyEval_EvalFrameDefault + 25723
110 org.python.python 0x000000010cce9b03 _PyEval_EvalCode + 2611
111 org.python.python 0x000000010cc10cb1 _PyFunction_Vectorcall + 289
112 org.python.python 0x000000010cce8e0c call_function + 732
113 org.python.python 0x000000010cce634b _PyEval_EvalFrameDefault + 25723
114 org.python.python 0x000000010cce9b03 _PyEval_EvalCode + 2611
115 org.python.python 0x000000010cc10cb1 _PyFunction_Vectorcall + 289
116 org.python.python 0x000000010cd4f870 pymain_run_module + 208
117 org.python.python 0x000000010cd4ef87 Py_RunMain + 1431
118 org.python.python 0x000000010cd4f58f pymain_main + 223
119 org.python.python 0x000000010cd4f49b Py_Main + 43
120 edu.ucsf.cgl.ChimeraX 0x000000010cbc5dc8 main + 120
121 libdyld.dylib 0x00007fff6ccc0cc9 start + 1
Thread 1:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff6ce0ab86 kevent64 + 10
1 QtWebEngineCore 0x00000001227413ca 0x11e26c000 + 72176586
2 QtWebEngineCore 0x000000012274126f 0x11e26c000 + 72176239
3 QtWebEngineCore 0x00000001226e1ff3 0x11e26c000 + 71786483
4 QtWebEngineCore 0x0000000122699a32 0x11e26c000 + 71490098
5 QtWebEngineCore 0x0000000122708a58 0x11e26c000 + 71944792
6 QtWebEngineCore 0x00000001226eeaad 0x11e26c000 + 71838381
7 QtWebEngineCore 0x0000000122708bea 0x11e26c000 + 71945194
8 QtWebEngineCore 0x0000000122734458 0x11e26c000 + 72123480
9 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 2:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff6ce01dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ce02160 mach_msg + 60
2 QtWebEngineCore 0x000000012273a933 0x11e26c000 + 72149299
3 QtWebEngineCore 0x00000001226fb4af 0x11e26c000 + 71890095
4 QtWebEngineCore 0x00000001226fc057 0x11e26c000 + 71893079
5 QtWebEngineCore 0x00000001226fbafd 0x11e26c000 + 71891709
6 QtWebEngineCore 0x0000000122734458 0x11e26c000 + 72123480
7 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 3:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff6ce0ab86 kevent64 + 10
1 QtWebEngineCore 0x00000001227413ca 0x11e26c000 + 72176586
2 QtWebEngineCore 0x000000012274126f 0x11e26c000 + 72176239
3 QtWebEngineCore 0x00000001226e1ff3 0x11e26c000 + 71786483
4 QtWebEngineCore 0x0000000122699a32 0x11e26c000 + 71490098
5 QtWebEngineCore 0x0000000122708a58 0x11e26c000 + 71944792
6 QtWebEngineCore 0x000000011ff25572 0x11e26c000 + 30119282
7 QtWebEngineCore 0x0000000122708bea 0x11e26c000 + 71945194
8 QtWebEngineCore 0x0000000122734458 0x11e26c000 + 72123480
9 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 4:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6ce01dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ce02160 mach_msg + 60
2 QtWebEngineCore 0x000000012273a933 0x11e26c000 + 72149299
3 QtWebEngineCore 0x000000012273a71f 0x11e26c000 + 72148767
4 QtWebEngineCore 0x0000000122665e69 0x11e26c000 + 71278185
5 QtWebEngineCore 0x00000001226e1ff3 0x11e26c000 + 71786483
6 QtWebEngineCore 0x0000000122699a32 0x11e26c000 + 71490098
7 QtWebEngineCore 0x0000000122708a58 0x11e26c000 + 71944792
8 QtWebEngineCore 0x0000000122708bea 0x11e26c000 + 71945194
9 QtWebEngineCore 0x0000000122734458 0x11e26c000 + 72123480
10 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 5:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6ce01dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ce02160 mach_msg + 60
2 QtWebEngineCore 0x000000012273a933 0x11e26c000 + 72149299
3 QtWebEngineCore 0x00000001226fb4af 0x11e26c000 + 71890095
4 QtWebEngineCore 0x00000001226fc057 0x11e26c000 + 71893079
5 QtWebEngineCore 0x00000001226fbb8d 0x11e26c000 + 71891853
6 QtWebEngineCore 0x0000000122734458 0x11e26c000 + 72123480
7 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 6:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff6ce01dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ce02160 mach_msg + 60
2 QtWebEngineCore 0x000000012273a933 0x11e26c000 + 72149299
3 QtWebEngineCore 0x000000012273a71f 0x11e26c000 + 72148767
4 QtWebEngineCore 0x0000000122665e69 0x11e26c000 + 71278185
5 QtWebEngineCore 0x00000001226e1ff3 0x11e26c000 + 71786483
6 QtWebEngineCore 0x0000000122699a32 0x11e26c000 + 71490098
7 QtWebEngineCore 0x0000000122708a58 0x11e26c000 + 71944792
8 QtWebEngineCore 0x0000000122708bea 0x11e26c000 + 71945194
9 QtWebEngineCore 0x0000000122734458 0x11e26c000 + 72123480
10 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 7:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff6ce0ab86 kevent64 + 10
1 QtWebEngineCore 0x00000001227413ca 0x11e26c000 + 72176586
2 QtWebEngineCore 0x000000012274126f 0x11e26c000 + 72176239
3 QtWebEngineCore 0x00000001226e1ff3 0x11e26c000 + 71786483
4 QtWebEngineCore 0x0000000122699a32 0x11e26c000 + 71490098
5 QtWebEngineCore 0x0000000122708a58 0x11e26c000 + 71944792
6 QtWebEngineCore 0x0000000125367882 0x11e26c000 + 118470786
7 QtWebEngineCore 0x0000000122708bea 0x11e26c000 + 71945194
8 QtWebEngineCore 0x0000000122734458 0x11e26c000 + 72123480
9 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 8:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff6ce04872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6cec5425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x0000000122732e22 0x11e26c000 + 72117794
3 QtWebEngineCore 0x0000000124975505 0x11e26c000 + 108041477
4 QtWebEngineCore 0x0000000122734458 0x11e26c000 + 72123480
5 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
6 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 9:: ThreadPoolSingleThreadSharedForeground0
0 libsystem_kernel.dylib 0x00007fff6ce01dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ce02160 mach_msg + 60
2 QtWebEngineCore 0x000000012273a933 0x11e26c000 + 72149299
3 QtWebEngineCore 0x00000001226fb4af 0x11e26c000 + 71890095
4 QtWebEngineCore 0x00000001226fc057 0x11e26c000 + 71893079
5 QtWebEngineCore 0x00000001226fbbbd 0x11e26c000 + 71891901
6 QtWebEngineCore 0x0000000122734458 0x11e26c000 + 72123480
7 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 10:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff6ce01dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ce02160 mach_msg + 60
2 QtWebEngineCore 0x000000012273a933 0x11e26c000 + 72149299
3 QtWebEngineCore 0x0000000122665e08 0x11e26c000 + 71278088
4 QtWebEngineCore 0x00000001226e1ff3 0x11e26c000 + 71786483
5 QtWebEngineCore 0x0000000122699a32 0x11e26c000 + 71490098
6 QtWebEngineCore 0x0000000122708a58 0x11e26c000 + 71944792
7 QtWebEngineCore 0x0000000122708bea 0x11e26c000 + 71945194
8 QtWebEngineCore 0x0000000122734458 0x11e26c000 + 72123480
9 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 11:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6ce01dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ce02160 mach_msg + 60
2 QtWebEngineCore 0x000000012273a933 0x11e26c000 + 72149299
3 QtWebEngineCore 0x000000012273a71f 0x11e26c000 + 72148767
4 QtWebEngineCore 0x0000000122665e69 0x11e26c000 + 71278185
5 QtWebEngineCore 0x00000001226e1ff3 0x11e26c000 + 71786483
6 QtWebEngineCore 0x0000000122699a32 0x11e26c000 + 71490098
7 QtWebEngineCore 0x0000000122708a58 0x11e26c000 + 71944792
8 QtWebEngineCore 0x0000000122708bea 0x11e26c000 + 71945194
9 QtWebEngineCore 0x0000000122734458 0x11e26c000 + 72123480
10 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 12:: NetworkService
0 libsystem_kernel.dylib 0x00007fff6ce0ab86 kevent64 + 10
1 QtWebEngineCore 0x00000001227413ca 0x11e26c000 + 72176586
2 QtWebEngineCore 0x000000012274126f 0x11e26c000 + 72176239
3 QtWebEngineCore 0x00000001226e1ff3 0x11e26c000 + 71786483
4 QtWebEngineCore 0x0000000122699a32 0x11e26c000 + 71490098
5 QtWebEngineCore 0x0000000122708a58 0x11e26c000 + 71944792
6 QtWebEngineCore 0x0000000122708bea 0x11e26c000 + 71945194
7 QtWebEngineCore 0x0000000122734458 0x11e26c000 + 72123480
8 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6ce01dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ce02160 mach_msg + 60
2 QtWebEngineCore 0x000000012273a933 0x11e26c000 + 72149299
3 QtWebEngineCore 0x000000012273a71f 0x11e26c000 + 72148767
4 QtWebEngineCore 0x0000000122665e69 0x11e26c000 + 71278185
5 QtWebEngineCore 0x00000001226e1ff3 0x11e26c000 + 71786483
6 QtWebEngineCore 0x0000000122699a32 0x11e26c000 + 71490098
7 QtWebEngineCore 0x0000000122708a58 0x11e26c000 + 71944792
8 QtWebEngineCore 0x0000000122708bea 0x11e26c000 + 71945194
9 QtWebEngineCore 0x0000000122734458 0x11e26c000 + 72123480
10 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 14:: ThreadPoolSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff6ce01dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ce02160 mach_msg + 60
2 QtWebEngineCore 0x000000012273a933 0x11e26c000 + 72149299
3 QtWebEngineCore 0x00000001226fb4af 0x11e26c000 + 71890095
4 QtWebEngineCore 0x00000001226fc057 0x11e26c000 + 71893079
5 QtWebEngineCore 0x00000001226fbbed 0x11e26c000 + 71891949
6 QtWebEngineCore 0x0000000122734458 0x11e26c000 + 72123480
7 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 15:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6ce01dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ce02160 mach_msg + 60
2 QtWebEngineCore 0x000000012273a933 0x11e26c000 + 72149299
3 QtWebEngineCore 0x000000012273a71f 0x11e26c000 + 72148767
4 QtWebEngineCore 0x0000000122665e69 0x11e26c000 + 71278185
5 QtWebEngineCore 0x00000001226e1ff3 0x11e26c000 + 71786483
6 QtWebEngineCore 0x0000000122699a32 0x11e26c000 + 71490098
7 QtWebEngineCore 0x0000000122708a58 0x11e26c000 + 71944792
8 QtWebEngineCore 0x0000000122708bea 0x11e26c000 + 71945194
9 QtWebEngineCore 0x0000000122734458 0x11e26c000 + 72123480
10 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 16:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff6ce01dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ce02160 mach_msg + 60
2 QtWebEngineCore 0x000000012273a933 0x11e26c000 + 72149299
3 QtWebEngineCore 0x000000012273a71f 0x11e26c000 + 72148767
4 QtWebEngineCore 0x0000000122665e69 0x11e26c000 + 71278185
5 QtWebEngineCore 0x00000001226e1ff3 0x11e26c000 + 71786483
6 QtWebEngineCore 0x0000000122699a32 0x11e26c000 + 71490098
7 QtWebEngineCore 0x0000000122708a58 0x11e26c000 + 71944792
8 QtWebEngineCore 0x0000000122708bea 0x11e26c000 + 71945194
9 QtWebEngineCore 0x0000000122734458 0x11e26c000 + 72123480
10 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 17:: ThreadPoolSingleThreadSharedBackgroundBlocking2
0 libsystem_kernel.dylib 0x00007fff6ce01dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ce02160 mach_msg + 60
2 QtWebEngineCore 0x000000012273a933 0x11e26c000 + 72149299
3 QtWebEngineCore 0x00000001226fb4af 0x11e26c000 + 71890095
4 QtWebEngineCore 0x00000001226fbd0c 0x11e26c000 + 71892236
5 QtWebEngineCore 0x00000001226fbb2d 0x11e26c000 + 71891757
6 QtWebEngineCore 0x0000000122734458 0x11e26c000 + 72123480
7 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 18:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff6ce01dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ce02160 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff33c42135 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff33c40c02 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff33c4007e CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff310a8bf4 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 19:
0 libsystem_kernel.dylib 0x00007fff6ce04872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6cec5425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x0000000110bdd23f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 20:
0 libsystem_kernel.dylib 0x00007fff6ce04872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6cec5425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x0000000110bdd23f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 21:
0 libsystem_kernel.dylib 0x00007fff6ce04872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6cec5425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x0000000110bdd23f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 22:
0 libsystem_pthread.dylib 0x00007fff6cec0b68 start_wqthread + 0
Thread 23:
0 libsystem_pthread.dylib 0x00007fff6cec0b68 start_wqthread + 0
Thread 24:
0 libsystem_pthread.dylib 0x00007fff6cec0b68 start_wqthread + 0
Thread 25:
0 libsystem_pthread.dylib 0x00007fff6cec0b68 start_wqthread + 0
Thread 26:
0 libsystem_pthread.dylib 0x00007fff6cec0b68 start_wqthread + 0
Thread 27:: Thread (pooled)
0 libsystem_kernel.dylib 0x00007fff6ce04872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6cec5425 _pthread_cond_wait + 698
2 QtCore 0x000000011aa62eac 0x11a860000 + 2109100
3 QtCore 0x000000011aa62bae 0x11a860000 + 2108334
4 QtCore 0x000000011aa62afe QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94
5 QtCore 0x000000011aa5d1e5 0x11a860000 + 2085349
6 QtCore 0x000000011aa58d83 0x11a860000 + 2067843
7 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 28:: Thread (pooled)
0 libsystem_kernel.dylib 0x00007fff6ce04872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6cec5425 _pthread_cond_wait + 698
2 QtCore 0x000000011aa62eac 0x11a860000 + 2109100
3 QtCore 0x000000011aa62bae 0x11a860000 + 2108334
4 QtCore 0x000000011aa62afe QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94
5 QtCore 0x000000011aa5d1e5 0x11a860000 + 2085349
6 QtCore 0x000000011aa58d83 0x11a860000 + 2067843
7 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 29:: Thread (pooled)
0 libsystem_kernel.dylib 0x00007fff6ce04872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6cec5425 _pthread_cond_wait + 698
2 QtCore 0x000000011aa62eac 0x11a860000 + 2109100
3 QtCore 0x000000011aa62bae 0x11a860000 + 2108334
4 QtCore 0x000000011aa62afe QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94
5 QtCore 0x000000011aa5d1e5 0x11a860000 + 2085349
6 QtCore 0x000000011aa58d83 0x11a860000 + 2067843
7 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 30:: Thread (pooled)
0 libsystem_kernel.dylib 0x00007fff6ce04872 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6cec5425 _pthread_cond_wait + 698
2 QtCore 0x000000011aa62eac 0x11a860000 + 2109100
3 QtCore 0x000000011aa62bae 0x11a860000 + 2108334
4 QtCore 0x000000011aa62afe QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94
5 QtCore 0x000000011aa5d1e5 0x11a860000 + 2085349
6 QtCore 0x000000011aa58d83 0x11a860000 + 2067843
7 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 31:: Dispatch queue: com.apple.opengl.cvmDoWork
0 libsystem_kernel.dylib 0x00007fff6ce01dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ce02160 mach_msg + 60
2 libdispatch.dylib 0x00007fff6cc7b90e _dispatch_mach_send_and_wait_for_reply + 632
3 libdispatch.dylib 0x00007fff6cc7bd4e dispatch_mach_send_with_result_and_wait_for_reply + 50
4 libxpc.dylib 0x00007fff6cf03846 xpc_connection_send_message_with_reply_sync + 238
5 libCoreVMClient.dylib 0x00007fff3d91d573 cvms_element_build_and_get_internal + 229
6 libCoreVMClient.dylib 0x00007fff3d91d47f cvms_element_build_from_source + 185
7 libCVMSPluginSupport.dylib 0x00007fff3d914fce cvm_deferred_build_modular(void*) + 422
8 libdispatch.dylib 0x00007fff6cc67658 _dispatch_client_callout + 8
9 libdispatch.dylib 0x00007fff6cc6cc44 _dispatch_lane_serial_drain + 597
10 libdispatch.dylib 0x00007fff6cc6d5d6 _dispatch_lane_invoke + 363
11 libdispatch.dylib 0x00007fff6cc76c09 _dispatch_workloop_worker_thread + 596
12 libsystem_pthread.dylib 0x00007fff6cec1a3d _pthread_wqthread + 290
13 libsystem_pthread.dylib 0x00007fff6cec0b77 start_wqthread + 15
Thread 32:
0 libsystem_pthread.dylib 0x00007fff6cec0b68 start_wqthread + 0
Thread 33:
0 libsystem_pthread.dylib 0x00007fff6cec0b68 start_wqthread + 0
Thread 34:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff6ce01dea mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ce02160 mach_msg + 60
2 QtWebEngineCore 0x000000012273a933 0x11e26c000 + 72149299
3 QtWebEngineCore 0x00000001226fb4af 0x11e26c000 + 71890095
4 QtWebEngineCore 0x00000001226fbd0c 0x11e26c000 + 71892236
5 QtWebEngineCore 0x00000001226fbafd 0x11e26c000 + 71891709
6 QtWebEngineCore 0x0000000122734458 0x11e26c000 + 72123480
7 libsystem_pthread.dylib 0x00007fff6cec5109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6cec0b8b thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000110859dc0 rcx: 0x00007febe0067418 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007febe0067440 rsp: 0x00007febe0067418
r8: 0x00007febe0067f48 r9: 0x4f8ca7c96757d8eb r10: 0x0000000110859dc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x00007febbb8c5860 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff6ce0832a rfl: 0x0000000000000246 cr2: 0x00007febe00668c0
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x10cbd1000 - 0x10ce39fff +org.python.python (3.9.11, [c] 2001-2021 Python Software Foundation. - 3.9.11) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/Python
0x10cfa7000 - 0x10cfa9fff +_heapq.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_heapq.cpython-39-darwin.so
0x10cfb3000 - 0x10cfb7ff7 +binascii.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/binascii.cpython-39-darwin.so
0x10cfc1000 - 0x10cfc6fff +zlib.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/zlib.cpython-39-darwin.so
0x10cfd0000 - 0x10cfd2fff +_bz2.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bz2.cpython-39-darwin.so
0x10cfdc000 - 0x10d00dfff +_lzma.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_lzma.cpython-39-darwin.so
0x10d01f000 - 0x10d020fff +grp.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/grp.cpython-39-darwin.so
0x10d02a000 - 0x10d02fff7 +_struct.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_struct.cpython-39-darwin.so
0x10d03e000 - 0x10d046fff +math.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/math.cpython-39-darwin.so
0x10d054000 - 0x10d055ff7 +_bisect.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bisect.cpython-39-darwin.so
0x10d05f000 - 0x10d060fff +_random.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_random.cpython-39-darwin.so
0x10d06a000 - 0x10d06efff +_sha512.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_sha512.cpython-39-darwin.so
0x10d078000 - 0x10d078fff +_arrays.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/arrays/_arrays.cpython-39-darwin.so
0x10d082000 - 0x10d123ff7 +libarrays.dylib (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/arrays/lib/libarrays.dylib
0x10d149000 - 0x10d14efff +_json.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_json.cpython-39-darwin.so
0x10d158000 - 0x10d59ffcb +_multiarray_umath.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_umath.cpython-39-darwin.so
0x10d6f8000 - 0x10d80fff7 +libgfortran.3.dylib (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgfortran.3.dylib
0x10d87e000 - 0x10d8b4fff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x10d8ca000 - 0x10d8dfff7 +libgcc_s.1.dylib (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgcc_s.1.dylib
0x10f8f1000 - 0x10f900fff +_datetime.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_datetime.cpython-39-darwin.so
0x10f914000 - 0x10f92bfff +_pickle.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_pickle.cpython-39-darwin.so
0x10f93e000 - 0x10f951ffb +_multiarray_tests.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_tests.cpython-39-darwin.so
0x10f96e000 - 0x10f970fff +_posixsubprocess.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_posixsubprocess.cpython-39-darwin.so
0x10f97a000 - 0x10f97eff7 +select.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/select.cpython-39-darwin.so
0x10f988000 - 0x10f999ff7 +_ctypes.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_ctypes.cpython-39-darwin.so
0x10f9b2000 - 0x10f9cdfff +_umath_linalg.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/linalg/_umath_linalg.cpython-39-darwin.so
0x10f9ea000 - 0x10f9fdfff +_pocketfft_internal.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/fft/_pocketfft_internal.cpython-39-darwin.so
0x10fa0a000 - 0x10fa7dff3 +mtrand.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/mtrand.cpython-39-darwin.so
0x10fae2000 - 0x10fb01ff3 +bit_generator.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/bit_generator.cpython-39-darwin.so
0x10fb26000 - 0x10fb5dfff +_common.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_common.cpython-39-darwin.so
0x10fb7e000 - 0x10fb84fff +_hashlib.cpython-39-darwin.so (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_hashlib.cpython-39-darwin.so
0x10fb93000 - 0x10fbecff7 +libssl.1.1.dylib (0) /Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/libssl.1.1.dylib
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0x7fff69e08000 - 0x7fff69ea1fe5 libate.dylib (3.0.1) /usr/lib/libate.dylib
0x7fff69ea5000 - 0x7fff69ea5ff3 libauto.dylib (187) /usr/lib/libauto.dylib
0x7fff69ea6000 - 0x7fff69f6affe libboringssl.dylib (283.120.1) /usr/lib/libboringssl.dylib
0x7fff69f6b000 - 0x7fff69f7bffb libbsm.0.dylib (60.100.1) /usr/lib/libbsm.0.dylib
0x7fff69f7c000 - 0x7fff69f88fff libbz2.1.0.dylib (44) /usr/lib/libbz2.1.0.dylib
0x7fff69f89000 - 0x7fff69fdbfff libc++.1.dylib (902.1) /usr/lib/libc++.1.dylib
0x7fff69fdc000 - 0x7fff69ff1ffb libc++abi.dylib (902) /usr/lib/libc++abi.dylib
0x7fff69ff2000 - 0x7fff69ff2fff libcharset.1.dylib (59) /usr/lib/libcharset.1.dylib
0x7fff69ff3000 - 0x7fff6a004fff libcmph.dylib (8) /usr/lib/libcmph.dylib
0x7fff6a005000 - 0x7fff6a01cfd7 libcompression.dylib (87.1) /usr/lib/libcompression.dylib
0x7fff6a2f6000 - 0x7fff6a30cff7 libcoretls.dylib (167) /usr/lib/libcoretls.dylib
0x7fff6a30d000 - 0x7fff6a30efff libcoretls_cfhelpers.dylib (167) /usr/lib/libcoretls_cfhelpers.dylib
0x7fff6a8b8000 - 0x7fff6a8c3fff libcsfde.dylib (551.0.1) /usr/lib/libcsfde.dylib
0x7fff6a8cb000 - 0x7fff6a92aff7 libcups.2.dylib (483.9) /usr/lib/libcups.2.dylib
0x7fff6aa34000 - 0x7fff6aa34fff libenergytrace.dylib (21) /usr/lib/libenergytrace.dylib
0x7fff6aa35000 - 0x7fff6aa4fff7 libexpat.1.dylib (19.60.3) /usr/lib/libexpat.1.dylib
0x7fff6aa50000 - 0x7fff6aa5cffb libexslt.0.dylib (16.12) /usr/lib/libexslt.0.dylib
0x7fff6aa5d000 - 0x7fff6aa5ffff libfakelink.dylib (149.1) /usr/lib/libfakelink.dylib
0x7fff6aa60000 - 0x7fff6aa65f57 libffi.dylib (26) /usr/lib/libffi.dylib
0x7fff6aa6e000 - 0x7fff6aa73fff libgermantok.dylib (24) /usr/lib/libgermantok.dylib
0x7fff6aa74000 - 0x7fff6aa7dff7 libheimdal-asn1.dylib (564.140.8) /usr/lib/libheimdal-asn1.dylib
0x7fff6aa7e000 - 0x7fff6ab6efff libiconv.2.dylib (59) /usr/lib/libiconv.2.dylib
0x7fff6ab6f000 - 0x7fff6adc6fff libicucore.A.dylib (64261.1.1) /usr/lib/libicucore.A.dylib
0x7fff6ade0000 - 0x7fff6ade1fff liblangid.dylib (133) /usr/lib/liblangid.dylib
0x7fff6ade2000 - 0x7fff6adfaff3 liblzma.5.dylib (16) /usr/lib/liblzma.5.dylib
0x7fff6ae12000 - 0x7fff6aeb9ff7 libmecab.dylib (883.11) /usr/lib/libmecab.dylib
0x7fff6aeba000 - 0x7fff6b11cff1 libmecabra.dylib (883.11) /usr/lib/libmecabra.dylib
0x7fff6b489000 - 0x7fff6b4b8fff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib
0x7fff6b5e8000 - 0x7fff6ba64ff5 libnetwork.dylib (1880.120.5) /usr/lib/libnetwork.dylib
0x7fff6ba65000 - 0x7fff6ba7cfff libnetworkextension.dylib (1095.140.2) /usr/lib/libnetworkextension.dylib
0x7fff6bb05000 - 0x7fff6bb38fde libobjc.A.dylib (787.1) /usr/lib/libobjc.A.dylib
0x7fff6bb4b000 - 0x7fff6bb4ffff libpam.2.dylib (25.100.1) /usr/lib/libpam.2.dylib
0x7fff6bb52000 - 0x7fff6bb88fff libpcap.A.dylib (89.120.2) /usr/lib/libpcap.A.dylib
0x7fff6bbc8000 - 0x7fff6bbd6ff9 libperfcheck.dylib (37.100.2) /usr/lib/libperfcheck.dylib
0x7fff6bbd7000 - 0x7fff6bbdaff3 libpmenergy.dylib (214.120.2) /usr/lib/libpmenergy.dylib
0x7fff6bbdb000 - 0x7fff6bbddfff libpmsample.dylib (214.120.2) /usr/lib/libpmsample.dylib
0x7fff6bc0c000 - 0x7fff6bc24fff libresolv.9.dylib (67.40.3) /usr/lib/libresolv.9.dylib
0x7fff6bc26000 - 0x7fff6bc6aff7 libsandbox.1.dylib (1217.141.9) /usr/lib/libsandbox.1.dylib
0x7fff6bc7e000 - 0x7fff6bc7fff7 libspindump.dylib (281.4) /usr/lib/libspindump.dylib
0x7fff6bc80000 - 0x7fff6be6aff7 libsqlite3.dylib (308.6) /usr/lib/libsqlite3.dylib
0x7fff6c00d000 - 0x7fff6c03eff7 libtidy.A.dylib (17.3) /usr/lib/libtidy.A.dylib
0x7fff6c060000 - 0x7fff6c0baff8 libusrtcp.dylib (1880.120.5) /usr/lib/libusrtcp.dylib
0x7fff6c0bb000 - 0x7fff6c0beffb libutil.dylib (57.140.1) /usr/lib/libutil.dylib
0x7fff6c0bf000 - 0x7fff6c0ccfff libxar.1.dylib (425.7) /usr/lib/libxar.1.dylib
0x7fff6c0d2000 - 0x7fff6c1b4ff7 libxml2.2.dylib (33.14) /usr/lib/libxml2.2.dylib
0x7fff6c1b8000 - 0x7fff6c1e0fff libxslt.1.dylib (16.12) /usr/lib/libxslt.1.dylib
0x7fff6c1e1000 - 0x7fff6c1f3ff3 libz.1.dylib (76.0.1) /usr/lib/libz.1.dylib
0x7fff6caa2000 - 0x7fff6caa7ff3 libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff6caa8000 - 0x7fff6cab3fff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff6cab4000 - 0x7fff6cabbfff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff6cabc000 - 0x7fff6cac5ff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff6cac6000 - 0x7fff6cb58fdb libcorecrypto.dylib (866.140.2) /usr/lib/system/libcorecrypto.dylib
0x7fff6cc65000 - 0x7fff6cca5ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib
0x7fff6cca6000 - 0x7fff6ccdcfff libdyld.dylib (750.7) /usr/lib/system/libdyld.dylib
0x7fff6ccdd000 - 0x7fff6ccddffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff6ccde000 - 0x7fff6cceaff3 libkxld.dylib (6153.141.66) /usr/lib/system/libkxld.dylib
0x7fff6cceb000 - 0x7fff6ccebff7 liblaunch.dylib (1738.140.3) /usr/lib/system/liblaunch.dylib
0x7fff6ccec000 - 0x7fff6ccf1ff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff6ccf2000 - 0x7fff6ccf4ff3 libquarantine.dylib (110.40.6) /usr/lib/system/libquarantine.dylib
0x7fff6ccf5000 - 0x7fff6ccf6ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff6ccf7000 - 0x7fff6cd0eff3 libsystem_asl.dylib (377.60.4) /usr/lib/system/libsystem_asl.dylib
0x7fff6cd0f000 - 0x7fff6cd0fff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff6cd10000 - 0x7fff6cd97fff libsystem_c.dylib (1353.100.4) /usr/lib/system/libsystem_c.dylib
0x7fff6cd98000 - 0x7fff6cd9bffb libsystem_configuration.dylib (1061.141.2) /usr/lib/system/libsystem_configuration.dylib
0x7fff6cd9c000 - 0x7fff6cd9ffff libsystem_coreservices.dylib (114.1) /usr/lib/system/libsystem_coreservices.dylib
0x7fff6cda0000 - 0x7fff6cda8fff libsystem_darwin.dylib (1353.100.4) /usr/lib/system/libsystem_darwin.dylib
0x7fff6cda9000 - 0x7fff6cdb0fff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff6cdb1000 - 0x7fff6cdb2ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff6cdb3000 - 0x7fff6ce00ff7 libsystem_info.dylib (538.1) /usr/lib/system/libsystem_info.dylib
0x7fff6ce01000 - 0x7fff6ce2dff7 libsystem_kernel.dylib (6153.141.66) /usr/lib/system/libsystem_kernel.dylib
0x7fff6ce2e000 - 0x7fff6ce75fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff6ce76000 - 0x7fff6ce9dfff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib
0x7fff6ce9e000 - 0x7fff6ceabffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff6ceac000 - 0x7fff6ceb5ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff6ceb6000 - 0x7fff6cebefef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff6cebf000 - 0x7fff6cec9fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff6ceca000 - 0x7fff6ceceff3 libsystem_sandbox.dylib (1217.141.9) /usr/lib/system/libsystem_sandbox.dylib
0x7fff6cecf000 - 0x7fff6ced1fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff6ced2000 - 0x7fff6ced9ffb libsystem_symptoms.dylib (1238.120.2) /usr/lib/system/libsystem_symptoms.dylib
0x7fff6ceda000 - 0x7fff6cef0ff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib
0x7fff6cef2000 - 0x7fff6cef7ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff6cef8000 - 0x7fff6cf2dffe libxpc.dylib (1738.140.3) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 31
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 166705
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%)
Writable regions: Total=3.4G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.4G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 896K 7
Activity Tracing 256K 1
CG backing stores 5376K 5
CG image 232K 17
CoreAnimation 144K 19
CoreGraphics 8K 1
CoreImage 36K 5
CoreUI image data 3468K 36
Foundation 4K 1
IOKit 15.5M 2
Kernel Alloc Once 8K 1
MALLOC 2.0G 261
MALLOC guard page 48K 10
MALLOC_MEDIUM (reserved) 632.0M 7 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 16K 2
OpenGL GLSL 384K 4
STACK GUARD 136K 34
Stack 160.3M 35
Stack Guard 56.0M 1
VM_ALLOCATE 210.2M 99
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 64.9M 615
__DATA_CONST 92K 5
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 421.0M 296
__OBJC_RO 32.3M 1
__OBJC_RW 1860K 2
__TEXT 649.0M 587
__UNICODE 564K 1
mapped file 86.7M 55
shared memory 2856K 27
=========== ======= =======
TOTAL 4.7G 2141
TOTAL, minus reserved VM space 3.7G 2141
System Profile:
Network Service: Wi-Fi, AirPort, en0
Boot Volume File System Type: apfs
Memory Module: BANK 0/ChannelA-DIMM0, 16 GB, LPDDR4X, 3733 MHz, Samsung, -
Memory Module: BANK 2/ChannelB-DIMM0, 16 GB, LPDDR4X, 3733 MHz, Samsung, -
USB Device: USB 3.1 Bus
USB Device: USB2.0 Hub
USB Device: USB Keyboard
USB Device: USB 3.1 Bus
USB Device: USB3.0 Hub
USB Device: Apple T2 Bus
USB Device: Touch Bar Backlight
USB Device: Touch Bar Display
USB Device: Apple Internal Keyboard / Trackpad
USB Device: Headset
USB Device: Ambient Light Sensor
USB Device: FaceTime HD Camera (Built-in)
USB Device: Apple T2 Controller
Thunderbolt Bus: MacBook Pro, Apple Inc., 86.0
Thunderbolt Bus: MacBook Pro, Apple Inc., 86.0
Model: MacBookPro16,2, BootROM 2020.80.5.0.1 (iBridge: 21.16.3049.0.0,0), 4 processors, Quad-Core Intel Core i5, 2 GHz, 32 GB, SMC
Graphics: kHW_IntelIrisPlusGraphicsItem, Intel Iris Plus Graphics, spdisplays_builtin
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x7BF), wl0: Oct 28 2020 14:13:29 version 9.30.357.42.32.5.48 FWID 01-767f6cce
Bluetooth: Version 7.0.6f8, 3 services, 27 devices, 1 incoming serial ports
===== Log before crash start =====
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/sarahconnolly/Downloads/cryosparc_P248_J861_010_volume_map_sharp.mrc
Opened cryosparc_P248_J861_010_volume_map_sharp.mrc as #1, grid size
448,448,448, pixel 0.867, shown at level 0.0678, step 2, values float32
> volume #1 step 1
> volume #1 level 0.22
> volume #1 level 0.2903
> volume #1 level 0.1966
> set bgColor white
> lighting soft
> graphics silhouettes true
> open
> /Users/sarahconnolly/Downloads/cryosparc_P248_J856_006_volume_map_sharp.mrc
Opened cryosparc_P248_J856_006_volume_map_sharp.mrc as #2, grid size
448,448,448, pixel 0.867, shown at level 0.0664, step 2, values float32
> volume #2 step 1
> volume #2 level 0.156
> volume #2 level 0.1489
> open
> /Users/sarahconnolly/Downloads/cryosparc_P248_J1543_006_volume_map_sharp.mrc
Opened cryosparc_P248_J1543_006_volume_map_sharp.mrc as #3, grid size
448,448,448, pixel 0.867, shown at level 0.0646, step 2, values float32
> hide #!2 models
> volume #3 step 1
> volume #3 level 0.1196
> volume #3 level 0.1221
> select add #1
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.93967,0.22365,-0.25885,14.318,0.17112,0.3479,0.92178,-70.535,0.29621,-0.91046,0.28864,245.94
> view matrix models
> #1,0.77301,0.6264,0.10037,-95.478,0.63413,-0.75842,-0.15058,245.28,-0.018196,0.18005,-0.98349,321.46
> view matrix models
> #1,0.7908,0.60572,0.087942,-92.706,0.61161,-0.77642,-0.15198,253.41,-0.023776,0.17397,-0.98446,323.9
> select subtract #1
Nothing selected
> select add #1
2 models selected
> ui mousemode right "translate selected models"
> view matrix models
> #1,0.7908,0.60572,0.087942,-99.145,0.61161,-0.77642,-0.15198,251.22,-0.023776,0.17397,-0.98446,361.12
> view matrix models
> #1,0.7908,0.60572,0.087942,-92.103,0.61161,-0.77642,-0.15198,253.53,-0.023776,0.17397,-0.98446,360.78
> select subtract #1
Nothing selected
> ui tool show "Fit in Map"
> fitmap #1 inMap #3
Fit map cryosparc_P248_J861_010_volume_map_sharp.mrc in map
cryosparc_P248_J1543_006_volume_map_sharp.mrc using 132904 points
correlation = 0.5483, correlation about mean = 0.1553, overlap = 3801
steps = 356, shift = 1.77, angle = 6.01 degrees
Position of cryosparc_P248_J861_010_volume_map_sharp.mrc (#1) relative to
cryosparc_P248_J1543_006_volume_map_sharp.mrc (#3) coordinates:
Matrix rotation and translation
0.82368210 0.55975075 0.09070221 -90.14948344
0.56593603 -0.82150638 -0.06959651 255.72749288
0.03555575 0.10865705 -0.99344322 365.37568580
Axis 0.95480269 0.29538817 0.03313098
Axis point 0.00000000 132.86010697 190.50449048
Rotation angle (degrees) 174.64388439
Shift along axis 1.56916227
> hide #!1 models
> show #!1 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> ui tool show "Hide Dust"
> surface dust #1 size 5.2
> show #!3 models
> select add #3
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #3,0.99864,-0.039336,0.034188,1.5561,0.036193,0.99545,0.088129,-22.508,-0.037499,-0.086772,0.99552,24.966
> view matrix models
> #3,0.99315,-0.11532,0.018655,20.264,0.11315,0.98931,0.091975,-36.975,-0.029062,-0.089234,0.99559,23.794
> view matrix models
> #3,0.99676,-0.07901,0.014763,13.232,0.077811,0.99457,0.069158,-26.896,-0.020147,-0.067785,0.9975,17.542
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.99676,-0.07901,0.014763,12.48,0.077811,0.99457,0.069158,-26.796,-0.020147,-0.067785,0.9975,19.698
> view orient
> select subtract #3
Nothing selected
> select add #3
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #3,0.99247,-0.084225,0.088925,0.55762,0.079681,0.99539,0.053474,-24.406,-0.093019,-0.045985,0.9946,30.154
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.99247,-0.084225,0.088925,-2.8822,0.079681,0.99539,0.053474,-25.855,-0.093019,-0.045985,0.9946,30.154
> ui mousemode right "rotate selected models"
> view matrix models
> #3,0.99506,-0.076399,-0.063385,23.373,0.079309,0.99585,0.044734,-24.249,0.059704,-0.04954,0.99699,0.74118
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.99506,-0.076399,-0.063385,30.286,0.079309,0.99585,0.044734,-23.495,0.059704,-0.04954,0.99699,0.74118
> select subtract #3
Nothing selected
> fitmap #1 inMap #3
Fit map cryosparc_P248_J861_010_volume_map_sharp.mrc in map
cryosparc_P248_J1543_006_volume_map_sharp.mrc using 132904 points
correlation = 0.5568, correlation about mean = 0.1657, overlap = 3974
steps = 560, shift = 1.8, angle = 3.92 degrees
Position of cryosparc_P248_J861_010_volume_map_sharp.mrc (#1) relative to
cryosparc_P248_J1543_006_volume_map_sharp.mrc (#3) coordinates:
Matrix rotation and translation
0.83077264 0.55550834 0.03503284 -80.06189141
0.55646630 -0.83034814 -0.02944850 251.39837604
0.01273057 0.04395960 -0.99895219 381.39758035
Axis 0.95674195 0.29066983 0.01248534
Axis point 0.00000000 134.03648794 193.73866235
Rotation angle (degrees) 177.80138886
Shift along axis 1.23723085
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
QPainter::begin: Paint device returned engine == 0, type: 3
===== Log before crash end =====
Log:
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Volumes/mohilab/smconn/Projects/Collaborations/CAV/evolutionary/tomo/Mutants/25feb13_590_Caveolin_p14_sl09_gr04/L01_ts_006/predictions_min_3/L01_ts_006_rec_dc_01_MemBrain_seg_v10_alpha.ckpt_segmented.mrc
Opened L01_ts_006_rec_dc_01_MemBrain_seg_v10_alpha.ckpt_segmented.mrc as #1,
grid size 1024,1440,395, pixel 1, shown at step 1, values int8
OpenGL version: 4.1 INTEL-14.7.28
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,2
Processor Name: Quad-Core Intel Core i5
Processor Speed: 2 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 512 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 32 GB
Boot ROM Version: 2020.80.5.0.1 (iBridge: 21.16.3049.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.15.7 (19H2026)
Kernel Version: Darwin 19.6.0
Time since boot: 4 days 8:30
Graphics/Displays:
Intel Iris Plus Graphics:
Chipset Model: Intel Iris Plus Graphics
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x8a53
Revision ID: 0x0007
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.21.0
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.6.0
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 9 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 |
comment:2 by , 9 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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