![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 8 months ago
Closed 8 months ago
#16989 closed defect (duplicate)
Crash in garbage collection
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.4.1-arm64-arm-64bit
ChimeraX Version: 1.8.dev202405040553 (2024-05-04 05:53:31 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x00000003b14af000 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 324 in wait
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 622 in wait
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1392 in run
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Current thread 0x00000001eb4ffac0 (most recent call first):
Garbage-collecting
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 161 in
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 161 in __iter__
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/structure.py", line 907 in atomspec_atoms
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/atomspec.py", line 627 in _add_model_parts
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/atomspec.py", line 476 in _check
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/atomspec.py", line 490 in _check
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/atomspec.py", line 490 in _check
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/atomspec.py", line 470 in find_matches
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/atomspec.py", line 612 in find_matches
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/atomspec.py", line 455 in find_matches
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/atomspec.py", line 1011 in find_matches
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/atomspec.py", line 1008 in evaluate
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/atomspec.py", line 1098 in evaluate
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/args.py", line 36 in parse
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/args.py", line 71 in parse
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 2776 in _parse_arg
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 2922 in _process_positional_arguments
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 3162 in run
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/run.py", line 49 in run
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/match_maker/tool.py", line 303 in run_matchmaker
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 285 in event_loop
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1006 in init
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1169 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, chimerax.pdb_lib._load_libs, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.surface._surface, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PIL._imagingmath, chimerax.atom_search.ast, chimerax.chem_group._chem_group, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw (total: 58)
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"procRole" : "Foreground",
"version" : 2,
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"captureTime" : "2025-02-28 09:26:19.6787 -0800",
"codeSigningMonitor" : 1,
"incident" : "A9E3D28C-7702-4822-8A1A-FBACB441B951",
"pid" : 696,
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"bug_type" : "309",
"procLaunch" : "2025-02-10 04:36:40.2377 -0800",
"procStartAbsTime" : 1103533241,
"procExitAbsTime" : 17610718671383,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
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"crashReporterKey" : "107FC257-928B-AFD3-F5BF-EF551CFB74AC",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRW+D\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkVDg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
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"exception" : {"codes":"0x0000000000000001, 0x00000000000000a9","rawCodes":[1,169],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x00000000000000a9"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":696},
"vmregioninfo" : "0xa9 is not in any region. Bytes before following region: 4372709207\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 104a24000-104a28000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
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===== Log before crash start =====
UCSF ChimeraX version: 1.8.dev202405040553 (2024-05-04)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 6TNY fromDatabase pdb format mmcif
Summary of feedback from opening 6TNY fetched from pdb
---
note | Fetching compressed mmCIF 6tny from http://files.rcsb.org/download/6tny.cif
6tny title:
Processive human polymerase δ holoenzyme [more info...]
Chain information for 6tny #1
---
Chain | Description | UniProt
A | DNA polymerase delta catalytic subunit | DPOD1_HUMAN 1-1107
B | DNA polymerase delta subunit 2 | DPOD2_HUMAN 1-469
C | DNA polymerase delta subunit 3 | DPOD3_HUMAN 2-466
D | DNA polymerase delta subunit 4 | DPOD4_HUMAN 2-107
E F G | Proliferating cell nuclear antigen | PCNA_HUMAN 1-261
P | DNA primer |
T | DNA template |
Non-standard residues in 6tny #1
---
DOC — 2',3'-dideoxycytidine-5'-monophosphate
SF4 — iron/sulfur cluster
TTP — thymidine-5'-triphosphate
ZN — zinc ion
4 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> lighting soft
> hide surfaces
> hide cartoons
> show cartoons
> hide surfaces
> select add #1
19722 atoms, 20206 bonds, 72 pseudobonds, 2452 residues, 4 models selected
> hide sel surfaces
> show sel surfaces
> hide sel surfaces
> show sel surfaces
> hide sel surfaces
> show sel cartoons
> hide sel atoms
> select subtract #1
9 models selected
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> preset "overall look" "publication 2 (depth-cued)"
Using preset: Overall Look / Publication 2 (Depth-Cued)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes f
lighting depthCue t
> preset "initial styles" "original look"
Using preset: Initial Styles / Original Look
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> preset "initial styles" cartoon
Using preset: Initial Styles / Cartoon
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> preset "initial styles" "original look"
Using preset: Initial Styles / Original Look
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> select add #1
19722 atoms, 20206 bonds, 72 pseudobonds, 2452 residues, 4 models selected
> hide sel atoms
> show sel cartoons
> select subtract #1
9 models selected
> select /P
469 atoms, 525 bonds, 23 residues, 1 model selected
> select nucleic-acid
1024 atoms, 1147 bonds, 55 pseudobonds, 50 residues, 2 models selected
> show sel atoms
> show sel cartoons
> hide sel atoms
> hide sel surfaces
> show sel atoms
> hide sel atoms
> nucleotides sel atoms
> style nucleic & sel stick
Changed 1024 atom styles
> nucleotides sel ladder
> show sel cartoons
> nucleotides sel ladder
> nucleotides sel atoms
> style nucleic & sel stick
Changed 1024 atom styles
> show sel atoms
> select add #1
19722 atoms, 20206 bonds, 72 pseudobonds, 2452 residues, 6 models selected
> select subtract #1
9 models selected
> select /A
7960 atoms, 8132 bonds, 11 pseudobonds, 1013 residues, 3 models selected
> color #1 #ba8571ff
> undo
> preset "initial styles" "original look"
Using preset: Initial Styles / Original Look
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> select add #1
19722 atoms, 20206 bonds, 72 pseudobonds, 2452 residues, 5 models selected
> select subtract #1
9 models selected
> select add #1
19722 atoms, 20206 bonds, 72 pseudobonds, 2452 residues, 4 models selected
> hide sel cartoons
> hide sel atoms
> show sel cartoons
> select subtract #1
9 models selected
> select nucleic-acid
1024 atoms, 1147 bonds, 55 pseudobonds, 50 residues, 2 models selected
> show sel atoms
> nucleotides sel atoms
> style nucleic & sel stick
Changed 1024 atom styles
> select add #1
19722 atoms, 20206 bonds, 72 pseudobonds, 2452 residues, 6 models selected
> select subtract #1
9 models selected
> select /A
7960 atoms, 8132 bonds, 11 pseudobonds, 1013 residues, 3 models selected
> show #!1 target m
> ui tool show "Color Actions"
> color sel salmon
> color sel dark salmon
> color sel salmon
> color sel green
> color sel steel blue
> color sel cadet blue
> color sel slate blue
> color sel medium slate blue
> color sel coral
> color sel tomato
> color sel coral
> select add #1
19722 atoms, 20206 bonds, 72 pseudobonds, 2452 residues, 5 models selected
> select subtract #1
9 models selected
> lighting soft
> lighting full
> lighting simple
> lighting full
> select ::name="TTP"
29 atoms, 30 bonds, 1 residue, 1 model selected
> select add #1
19722 atoms, 20206 bonds, 72 pseudobonds, 2452 residues, 4 models selected
> select subtract #1
9 models selected
> select ::name="TTP"
29 atoms, 30 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel byhetero
> ui tool show H-Bonds
> hbonds sel reveal true
9 hydrogen bonds found
> hbonds sel reveal true
9 hydrogen bonds found
> hide sel atoms
> show sel atoms
> select add #1
19722 atoms, 20206 bonds, 26 pseudobonds, 2452 residues, 4 models selected
> select subtract #1
9 models selected
> hide atoms
> show atoms
> undo
> select ::name="TTP"
29 atoms, 30 bonds, 1 pseudobond, 1 residue, 2 models selected
> hide sel atoms
> show sel atoms
> hide sel cartoons
> show sel cartoons
> nucleotides sel atoms
> style nucleic & sel stick
Changed 0 atom styles
> show sel atoms
> hide sel atoms
> show sel atoms
> nucleotides sel atoms
> style nucleic & sel stick
Changed 0 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 0 atom styles
> style sel stick
Changed 29 atom styles
> select add #1
19722 atoms, 20206 bonds, 26 pseudobonds, 2452 residues, 4 models selected
> style sel stick
Changed 19722 atom styles
> select subtract #1
9 models selected
> select ::name="TTP"
29 atoms, 30 bonds, 1 pseudobond, 1 residue, 2 models selected
> color (#!1 & sel) hot pink
> color (#!1 & sel) cyan
> color (#!1 & sel) light sea green
> color (#!1 & sel) byhetero
> hide #1.3 models
> hide #1.2 models
> hide #1.1 models
> show #1.1 models
> ui tool show "Show Sequence Viewer"
> ui tool show "Side View"
> lighting soft
> lighting simple
> lighting full
> lighting flat
> lighting full
> lighting soft
> lighting full
> lighting flat
> lighting soft
> lighting shadows true intensity 0.5
> lighting full
> lighting shadows false
> graphics silhouettes false
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> select /A:294-338
356 atoms, 367 bonds, 45 residues, 1 model selected
> select /A:294-329
283 atoms, 293 bonds, 36 residues, 1 model selected
> select /A:294-345
411 atoms, 424 bonds, 52 residues, 1 model selected
> select
> /A:160-169,173-177,216-228,249-259,301-306,373-389,401-413,459-467,473-482,493-499,501-540,544-548,551-564,605-614,617-619,655-675,679-705,713-739,767-783,837-853,856-873,898-906,941-949,953-960,962-971,976-990,1001-1005,1033-1063,1077-1096
3294 atoms, 3320 bonds, 407 residues, 1 model selected
> select /A:294-345
411 atoms, 424 bonds, 52 residues, 1 model selected
> select
> /A:160-169,173-177,216-228,249-259,301-306,373-389,401-413,459-467,473-482,493-499,501-540,544-548,551-564,605-614,617-619,655-675,679-705,713-739,767-783,837-853,856-873,898-906,941-949,953-960,962-971,976-990,1001-1005,1033-1063,1077-1096
3294 atoms, 3320 bonds, 407 residues, 1 model selected
> select /A:692
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /A:692-693
13 atoms, 12 bonds, 2 residues, 1 model selected
> select
> /A:94-105,123-131,136-142,147-151,192-195,207-213,265-268,286-291,296-298,311-319,334-343,351-356,367-370,392-395,431-438,442-449,455-458,592-594,598-603,621-622,637-639,645-647,750-754,758-762,792-805,808-814,824-827,883-886,921-926,939-940,992-993
1442 atoms, 1444 bonds, 176 residues, 1 model selected
> select /A:693
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:693
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:694
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /A:694
9 atoms, 8 bonds, 1 residue, 1 model selected
> select
> /A:160-169,173-177,216-228,249-259,301-306,373-389,401-413,459-467,473-482,493-499,501-540,544-548,551-564,605-614,617-619,655-675,679-705,713-739,767-783,837-853,856-873,898-906,941-949,953-960,962-971,976-990,1001-1005,1033-1063,1077-1096
3294 atoms, 3320 bonds, 407 residues, 1 model selected
> select /A:667
11 atoms, 10 bonds, 1 residue, 1 model selected
> select /A:667
11 atoms, 10 bonds, 1 residue, 1 model selected
> select /A:694
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /A:694
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /A:667
11 atoms, 10 bonds, 1 residue, 1 model selected
> select /A:667
11 atoms, 10 bonds, 1 residue, 1 model selected
> select /A:694
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /A:667
11 atoms, 10 bonds, 1 residue, 1 model selected
> select /A:694
9 atoms, 8 bonds, 1 residue, 1 model selected
> color (#!1 & sel) byhetero
> select /A:667
11 atoms, 10 bonds, 1 residue, 1 model selected
> color (#!1 & sel) byhetero
> color (#!1 & sel) cornflower blue
> color (#!1 & sel) byhetero
> color (#!1 & sel) yellow
> color (#!1 & sel) byhetero
> select /A:694
9 atoms, 8 bonds, 1 residue, 1 model selected
> color (#!1 & sel) yellow
> color (#!1 & sel) byhetero
> select
> /A:160-169,173-177,216-228,249-259,301-306,373-389,401-413,459-467,473-482,493-499,501-540,544-548,551-564,605-614,617-619,655-675,679-705,713-739,767-783,837-853,856-873,898-906,941-949,953-960,962-971,976-990,1001-1005,1033-1063,1077-1096
3294 atoms, 3320 bonds, 407 residues, 1 model selected
> select subtract #1.4
1 model selected
> save /Users/kevinwang/Desktop/image1.png supersample 3
> close session
> open 1rtd fromDatabase pdb format mmcif
Summary of feedback from opening 1rtd fetched from pdb
---
notes | Fetching compressed mmCIF 1rtd from http://files.rcsb.org/download/1rtd.cif
Fetching CCD MG from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/G/MG/MG.cif
1rtd title:
Structure of A catalytic complex of hiv-1 reverse transcriptase: implications
for nucleoside analog drug resistance [more info...]
Chain information for 1rtd #1
---
Chain | Description | UniProt
A C | PROTEIN (REVERSE TRANSCRIPTASE) | POL_HV1B1 1-554
B D | PROTEIN (REVERSE TRANSCRIPTASE) | POL_HV1H2 1-440
E G | DNA TEMPLATE FOR REVERSE TRANSCRIPTASE |
F H | DNA PRIMER FOR REVERSE TRANSCRIPTASE |
Non-standard residues in 1rtd #1
---
MG — magnesium ion
TTP — thymidine-5'-triphosphate
1rtd mmCIF Assemblies
---
1| author_defined_assembly
2| author_defined_assembly
> select add #1
17784 atoms, 18433 bonds, 141 pseudobonds, 2036 residues, 4 models selected
> hide sel atoms
> show sel cartoons
> select subtract #1
Nothing selected
> open 3v81 fromDatabase pdb format mmcif
Summary of feedback from opening 3v81 fetched from pdb
---
note | Fetching compressed mmCIF 3v81 from http://files.rcsb.org/download/3v81.cif
3v81 title:
Crystal structure of HIV-1 reverse transcriptase (RT) with DNA and the
nonnucleoside inhibitor nevirapine [more info...]
Chain information for 3v81 #2
---
Chain | Description | UniProt
A C | HIV-1 Reverse Transcriptase P66 subunit | POL_HV1B1 1-554
B D | HIV-1 Reverse Transcriptase P51 subunit | POL_HV1B1 1-428
E T | DNA (5'-D(*AP*TP*GP*GP*AP*AP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3') |
F P | DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(ATM))-3') |
Non-standard residues in 3v81 #2
---
ATM — 3'-azido-3'-deoxythymidine-5'-monophosphate
MRG — N2-(3-mercaptopropyl)-2'-deoxyguanosine-5'-monophosphate
NVP —
11-cyclopropyl-5,11-dihydro-4-methyl-6H-dipyrido[3,2-B:2',3'-E][1,4]diazepin-6-one
(non-nucleoside RT inhibitor nevirapine)
3v81 mmCIF Assemblies
---
1| author_and_software_defined_assembly
2| author_and_software_defined_assembly
> select add #2
17510 atoms, 18144 bonds, 102 pseudobonds, 2016 residues, 3 models selected
> hide sel atoms
> show sel cartoons
> select subtract #2
Nothing selected
> ui tool show Matchmaker
> matchmaker #!2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 1rtd, chain A (#1) with 3v81, chain A (#2), sequence alignment
score = 2756.8
RMSD between 311 pruned atom pairs is 0.794 angstroms; (across all 554 pairs:
3.284)
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!1 models
> show #!1 models
> show #!2 models
> hide #1.1 models
> show #1.1 models
> hide #1.2 models
> show #1.2 models
> sym #2 assembly 1
Made 1 copies for 3v81 assembly 1
> view
> sym #2 assembly 2
Made 1 copies for 3v81 assembly 2
> view
> sym #2 assembly 1
Made 1 copies for 3v81 assembly 1
> view
> sym #2 assembly 1
Made 1 copies for 3v81 assembly 1
> view
> sym #2 assembly 2
Made 1 copies for 3v81 assembly 2
> view
> sym #2 assembly 1
Made 1 copies for 3v81 assembly 1
> view
> sym #2 assembly 1
Made 1 copies for 3v81 assembly 1
> view
> sym #2 assembly 1
Made 1 copies for 3v81 assembly 1
> view
> sym #2 assembly 2
Made 1 copies for 3v81 assembly 2
> view
> sym #2 assembly 2
Made 1 copies for 3v81 assembly 2
> view
> sym #1 assembly 1
Made 1 copies for 1rtd assembly 1
> view
> sym #1 assembly 2
Made 1 copies for 1rtd assembly 2
> view
> select add #3
8755 atoms, 9072 bonds, 52 pseudobonds, 1008 residues, 4 models selected
> hide #!3 models
> show #!3 models
> select subtract #3
Nothing selected
> close session
> open 1rtd format mmcif fromDatabase pdb
1rtd title:
Structure of A catalytic complex of hiv-1 reverse transcriptase: implications
for nucleoside analog drug resistance [more info...]
Chain information for 1rtd #1
---
Chain | Description | UniProt
A C | PROTEIN (REVERSE TRANSCRIPTASE) | POL_HV1B1 1-554
B D | PROTEIN (REVERSE TRANSCRIPTASE) | POL_HV1H2 1-440
E G | DNA TEMPLATE FOR REVERSE TRANSCRIPTASE |
F H | DNA PRIMER FOR REVERSE TRANSCRIPTASE |
Non-standard residues in 1rtd #1
---
MG — magnesium ion
TTP — thymidine-5'-triphosphate
1rtd mmCIF Assemblies
---
1| author_defined_assembly
2| author_defined_assembly
> sym #1 assembly 1
Made 1 copies for 1rtd assembly 1
> view
> hide #1.1 models
> hide #1.2 models
> hide #1.3 models
> hide #!2.1 atoms
> show #!2.1 cartoons
> select add #2.1.2
15 pseudobonds, 1 model selected
> hide #2.1.2 models
> show #2.1.2 models
> select subtract #2.1.2
Nothing selected
> select ::name="TTP"
87 atoms, 90 bonds, 3 residues, 2 models selected
> show sel & #!2.1 atoms
> ui tool show H-Bonds
> hbonds sel reveal true
The following atoms were skipped as donors/acceptors due to missing heavy-atom
bond partners: 1rtd #1/C PRO 468 N
42 hydrogen bonds found
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A #1/C #2.1/A
Alignment identifier is 1
> select
> #1/A,C:60-64,71-75,105-110,179-183,186-191,227-229,232-234,239-241,326-331,337-342,348-354,388-391,414-416,438-446,453-459,464-469,492-497,530-535
> #2.1/A:60-64,71-75,105-110,179-183,186-191,227-229,232-234,239-241,326-331,337-342,348-354,388-391,414-416,438-446,453-459,464-469,492-497,530-535
2449 atoms, 2478 bonds, 288 residues, 2 models selected
> select #1/A,C:64 #2.1/A:64
27 atoms, 24 bonds, 3 residues, 2 models selected
> select #1/A,C:64 #2.1/A:64
27 atoms, 24 bonds, 3 residues, 2 models selected
PROTEIN (REVERSE TRANSCRIPTASE) [ID: 1] region 3 chains [64] RMSD: 0.000
> select #1/A,C:65 #2.1/A:65
27 atoms, 24 bonds, 3 residues, 2 models selected
> select #1/A,C:65 #2.1/A:65
27 atoms, 24 bonds, 3 residues, 2 models selected
PROTEIN (REVERSE TRANSCRIPTASE) [ID: 1] region 3 chains [65] RMSD: 0.000
> show sel & #!2.1 atoms
> nucleotides sel & #!2.1 atoms
> style nucleic & sel & #!2.1 stick
Changed 0 atom styles
> nucleotides sel & #!2.1 atoms
> style nucleic & sel & #!2.1 stick
Changed 0 atom styles
> hide sel & #!2.1 atoms
> show sel & #!2.1 atoms
> style sel & #!2.1 stick
Changed 9 atom styles
> color (#!2.1 & sel) cyan
> color (#!2.1 & sel) byhetero
> ui tool show "Show Sequence Viewer"
> sequence chain #1/E #1/G #2.1/E
Alignment identifier is 1
> select #1/E,G:3 #2.1/E:3
57 atoms, 63 bonds, 3 residues, 2 models selected
> select #1/E,G:3-4 #2.1/E:3-4
114 atoms, 126 bonds, 6 residues, 2 models selected
DNA TEMPLATE FOR REVERSE TRANSCRIPTASE [ID: 1] region 3 chains [3-4] RMSD:
0.000
> select #1/E,G:7 #2.1/E:7
57 atoms, 60 bonds, 3 residues, 2 models selected
> select #1/E,G:7-20 #2.1/E:7-20
864 atoms, 969 bonds, 42 residues, 2 models selected
DNA TEMPLATE FOR REVERSE TRANSCRIPTASE [ID: 1] region 3 chains [7-20] RMSD:
0.000
> select #1/E,G:6 #2.1/E:6
57 atoms, 60 bonds, 3 residues, 2 models selected
> select #1/E,G:6 #2.1/E:6
57 atoms, 60 bonds, 3 residues, 2 models selected
DNA TEMPLATE FOR REVERSE TRANSCRIPTASE [ID: 1] region 3 chains [6] RMSD: 0.000
> show sel & #!2.1 atoms
> hide sel & #!2.1 atoms
> select #1/E,G:4 #2.1/E:4
57 atoms, 60 bonds, 3 residues, 2 models selected
> select #1/E,G:4 #2.1/E:4
57 atoms, 60 bonds, 3 residues, 2 models selected
DNA TEMPLATE FOR REVERSE TRANSCRIPTASE [ID: 1] region 3 chains [4] RMSD: 0.000
> select #1/E,G:5-6 #2.1/E:5-6
120 atoms, 132 bonds, 6 residues, 2 models selected
> select #1/E,G:5-6 #2.1/E:5-6
120 atoms, 132 bonds, 6 residues, 2 models selected
DNA TEMPLATE FOR REVERSE TRANSCRIPTASE [ID: 1] region 3 chains [5-6] RMSD:
0.000
> select #1/E,G:5 #2.1/E:5
63 atoms, 69 bonds, 3 residues, 2 models selected
> select #1/E,G:5 #2.1/E:5
63 atoms, 69 bonds, 3 residues, 2 models selected
DNA TEMPLATE FOR REVERSE TRANSCRIPTASE [ID: 1] region 3 chains [5] RMSD: 0.000
> style sel & #!2.1 stick
Changed 21 atom styles
> color (#!2.1 & sel) byhetero
> select ::name="MG"
10 atoms, 3 pseudobonds, 10 residues, 4 models selected
> show sel & #!2.1 surfaces
> ui tool show Contacts
> ui tool show Distances
No distances to delete!
> ui tool show H-Bonds
> hbonds sel reveal true
The following atoms were skipped as donors/acceptors due to missing heavy-atom
bond partners: 1rtd #1/C PRO 468 N
0 hydrogen bonds found
> select subtract #3
10 atoms, 3 pseudobonds, 10 residues, 5 models selected
> select add #3
10 atoms, 3 pseudobonds, 10 residues, 5 models selected
> close #3
> select ::name="TTP"
87 atoms, 90 bonds, 3 residues, 2 models selected
> ui tool show H-Bonds
> hbonds sel reveal true
The following atoms were skipped as donors/acceptors due to missing heavy-atom
bond partners: 1rtd #1/C PRO 468 N
42 hydrogen bonds found
> open 3v81 fromDatabase pdb format mmcif
3v81 title:
Crystal structure of HIV-1 reverse transcriptase (RT) with DNA and the
nonnucleoside inhibitor nevirapine [more info...]
Chain information for 3v81 #4
---
Chain | Description | UniProt
A C | HIV-1 Reverse Transcriptase P66 subunit | POL_HV1B1 1-554
B D | HIV-1 Reverse Transcriptase P51 subunit | POL_HV1B1 1-428
E T | DNA (5'-D(*AP*TP*GP*GP*AP*AP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3') |
F P | DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(ATM))-3') |
Non-standard residues in 3v81 #4
---
ATM — 3'-azido-3'-deoxythymidine-5'-monophosphate
MRG — N2-(3-mercaptopropyl)-2'-deoxyguanosine-5'-monophosphate
NVP —
11-cyclopropyl-5,11-dihydro-4-methyl-6H-dipyrido[3,2-B:2',3'-E][1,4]diazepin-6-one
(non-nucleoside RT inhibitor nevirapine)
3v81 mmCIF Assemblies
---
1| author_and_software_defined_assembly
2| author_and_software_defined_assembly
> sym #4 assembly 1
Made 1 copies for 3v81 assembly 1
> view
> close #5
> show #!4 models
> sym #4 assembly 1
Made 1 copies for 3v81 assembly 1
> view
> close #4
> close #1
> select add #2.1
8894 atoms, 9218 bonds, 25 pseudobonds, 1019 residues, 4 models selected
> select add #2
8894 atoms, 9218 bonds, 25 pseudobonds, 1019 residues, 6 models selected
> select subtract #2
1 model selected
> select add #5
8755 atoms, 9072 bonds, 52 pseudobonds, 1008 residues, 4 models selected
> hide sel atoms
> show sel cartoons
> select subtract #5.1
1 model selected
> select add #5
8755 atoms, 9072 bonds, 52 pseudobonds, 1008 residues, 4 models selected
> select subtract #5
Nothing selected
> ui tool show Matchmaker
===== Log before crash end =====
Log:
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.8.dev202405040553 (2024-05-04)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 88
OpenGL renderer: Apple M2 Max
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac14,6
Model Number: Z176000KLLL/A
Chip: Apple M2 Max
Total Number of Cores: 12 (8 performance and 4 efficiency)
Memory: 96 GB
System Firmware Version: 10151.101.3
OS Loader Version: 10151.101.3
Software:
System Software Overview:
System Version: macOS 14.4.1 (23E224)
Kernel Version: Darwin 23.4.0
Time since boot: 17 days, 22 hours, 26 minutes
Graphics/Displays:
Apple M2 Max:
Chipset Model: Apple M2 Max
Type: GPU
Bus: Built-In
Total Number of Cores: 38
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3456 x 2234 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.6
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57
ChimeraX-AtomicLibrary: 14.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.5
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.3
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.4
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8.dev202405040553
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.9
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.15
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.4
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 1.0.4
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.4
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.51.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.2
jedi: 0.19.1
Jinja2: 3.1.3
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.10
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.1
prompt-toolkit: 3.0.43
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4
traitlets: 5.14.2
typing-extensions: 4.11.0
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.10
Change History (2)
comment:1 by , 8 months ago
| Component: | Unassigned → Core |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in garbage collection |
comment:2 by , 8 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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