Opened 10 months ago

Closed 8 months ago

#16581 closed defect (fixed)

ui view fourup: OpenGL texture was not deleted before graphics.Texture destroyed

Reported by: chimerax-bug-report@… Owned by: Zach Pearson
Priority: normal Milestone:
Component: DICOM Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Windows-10-10.0.22631
ChimeraX Version: 1.8rc202406060152 (2024-06-06 01:52:35 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.8rc202406060152 (2024-06-06)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> C:\Users\heloisa.ciol\Downloads\cryosparc_P18_J556_002_volume_map_sharp.mrc
> format mrc

Opened cryosparc_P18_J556_002_volume_map_sharp.mrc as #1, grid size
416,416,416, pixel 0.68, shown at level 0.0245, step 2, values float32  

> surface dust #1 size 6.8

> ui mousemode right "map eraser"

> volume erase #1 center 181.44,95.332,162.25 radius 19.905

Opened cryosparc_P18_J556_002_volume_map_sharp.mrc copy as #3, grid size
416,416,416, pixel 0.68, shown at step 1, values float32  

> volume erase #3 center 183.11,101.71,172.39 radius 19.802

> volume erase #3 center 181.26,129.8,202.88 radius 19.802

> volume erase #3 center 135.53,183.91,196.83 radius 19.802

> volume erase #3 center 108.49,195.74,137.45 radius 19.802

> volume erase #3 center 157.4,200.19,144.73 radius 19.802

> volume erase #3 center 129.86,169.96,214.45 radius 19.802

> volume erase #3 center 91.446,139.69,188.32 radius 19.802

> volume erase #3 center 91.639,133.41,165.83 radius 19.802

> volume erase #3 center 95.182,118.42,156.13 radius 19.802

> volume erase #3 center 99.518,112.98,142.51 radius 19.802

> volume erase #3 center 96.165,119.63,136.93 radius 19.802

> volume erase #3 center 83.407,160.52,112.6 radius 19.802

> volume erase #3 center 84.728,156.9,124.74 radius 19.802

> volume erase #3 center 89.132,168.03,127.84 radius 19.802

> volume erase #3 center 84.898,156.93,161.72 radius 19.802

> volume erase #3 center 88.405,160.09,141.97 radius 19.802

> volume erase #3 center 84.073,142.22,130.74 radius 19.802

> volume erase #3 center 95.234,121.22,142.1 radius 19.802

> volume erase #3 center 117.92,89.698,169.24 radius 19.802

> volume erase #3 center 110.89,104.14,128.08 radius 19.802

> volume erase #3 center 106.32,121.77,84.157 radius 19.802

> volume erase #3 center 109.38,104.62,109.45 radius 19.802

> volume erase #3 center 109.68,94.615,153.33 radius 19.802

> volume erase #3 center 129.17,79.621,143.58 radius 19.802

> volume erase #3 center 125.55,103.88,200.69 radius 19.802

> volume erase #3 center 126.58,99.916,190.26 radius 19.802

> volume erase #3 center 107.42,104.73,181.21 radius 19.802

> volume erase #3 center 157.92,105.19,200.82 radius 19.802

> volume erase #3 center 77.708,142.8,139.15 radius 19.802

> volume erase #3 center 85.25,122.33,114.65 radius 19.802

> volume erase #3 center 84.115,148.71,85.479 radius 19.802

> volume erase #3 center 97.983,163.99,86.277 radius 19.802

> volume erase #3 center 110.77,177.25,88.457 radius 19.802

> volume erase #3 center 118.94,182.55,97.437 radius 19.802

> volume erase #3 center 139.86,186.07,87.642 radius 19.802

> volume erase #3 center 160.72,177.85,78.786 radius 19.802

> volume erase #3 center 180.21,163.46,70.078 radius 19.802

> volume erase #3 center 172.38,156.38,69.86 radius 19.802

> volume erase #3 center 191.44,160.07,94.36 radius 19.802

> volume erase #3 center 192.85,166.1,111.43 radius 19.802

> volume erase #3 center 189.65,136.91,91.548 radius 19.802

> volume erase #3 center 131.16,91.487,107.64 radius 19.802

> volume erase #3 center 161.77,93.241,107.08 radius 19.802

> volume erase #3 center 173.16,95.277,105.5 radius 19.802

> volume erase #3 center 173.71,102,115.34 radius 17.821

> ui mousemode right translate

> ui mousemode right "map eraser"

> volume erase #3 center 106.77,181.35,167.92 radius 17.821

> volume erase #3 center 114,188.23,156.01 radius 17.821

> volume erase #3 center 126.95,188.02,172.61 radius 17.821

> volume erase #3 center 127.65,185.54,164.46 radius 17.821

> volume erase #3 center 150.05,194.26,163.45 radius 17.821

> volume erase #3 center 178.35,101.5,98.357 radius 17.821

> volume erase #3 center 172.05,117.13,81.338 radius 17.821

> volume erase #3 center 196.17,149.09,108.31 radius 17.821

No map chosen to save  

> save "C:/Users/heloisa.ciol/OneDrive - CNPEM - Centro Nacional de Pesquisa
> em Energia e Materiais/Experimentos/Peixe-Boi/PB 2501/2024.12 -
> Processamento coleta Krios (com
> tilt)/cryosparc_P18_J556_002_volume_map_sharp_clean.mrc" models #3

> volume erase #3 center 188.97,131.17,116.95 radius 17.821

> volume erase #3 center 179.76,117.75,123.44 radius 17.821

> volume erase #3 center 193.56,133.26,138.74 radius 17.821

> ui mousemode right translate

> ui mousemode right "map eraser"

> volume erase #3 center 191.03,148.45,153.29 radius 10.325

> volume erase #3 center 176.8,144.43,148.34 radius 7.3549

> volume erase #3 center 179.84,153.55,154.22 radius 7.3549

> volume erase #3 center 181.39,160.1,159.47 radius 7.3549

> volume erase #3 center 185.67,153.35,166.12 radius 7.3549

[Repeated 1 time(s)]

> volume erase #3 center 182.13,158.64,166.86 radius 7.3549

> volume erase #3 center 179.5,168.25,166.1 radius 7.3549

> volume erase #3 center 167.1,179.22,161.66 radius 7.3549

> volume erase #3 center 182.69,175.35,152.53 radius 7.3549

> volume erase #3 center 174.34,173.73,158.36 radius 7.3549

> volume erase #3 center 179.16,168.58,157.36 radius 7.3549

> volume erase #3 center 186.53,159.34,149.85 radius 7.3549

> volume erase #3 center 163.32,101.38,183.12 radius 7.3549

> volume erase #3 center 152.83,100.05,182.03 radius 7.3549

> volume erase #3 center 157.77,103.97,182.34 radius 7.3549

> volume erase #3 center 162.64,99.409,176.2 radius 7.3549

> volume erase #3 center 184.5,112.47,155.87 radius 7.3549

> volume erase #3 center 188.74,121.64,161.26 radius 7.3549

> volume erase #3 center 184.23,122.04,168.52 radius 7.3549

> volume erase #3 center 130.77,174.08,155.58 radius 7.3549

> ui mousemode right translate

> ui mousemode right "map eraser"

> volume erase #3 center 132.08,169.55,151.31 radius 5.6576

> volume erase #3 center 134.81,167.88,148.42 radius 5.6576

> volume erase #3 center 137.49,167.51,146.16 radius 5.6576

> ui mousemode right translate

> ui mousemode right "map eraser"

> volume erase #3 center 138.42,166.52,144.51 radius 5.6576

> surface dust #3 size 6.8

> ui mousemode right translate

> ui mousemode right "map eraser"

> volume erase #3 center 160.39,182.42,187.52 radius 5.6576

> volume erase #3 center 180.7,162.14,189.46 radius 10.042

> volume erase #3 center 177.16,151.34,193.64 radius 10.042

> volume erase #3 center 109.04,124.59,191.55 radius 10.042

> volume erase #3 center 137.46,196.93,128.92 radius 10.042

> surface dust #3 size 6.8

> ui mousemode right translate

> ui mousemode right "map eraser"

> volume erase #3 center 142.93,185.89,150 radius 10.042

> volume erase #3 center 115.03,172.04,166.23 radius 10.042

> save "C:/Users/heloisa.ciol/OneDrive - CNPEM - Centro Nacional de Pesquisa
> em Energia e Materiais/Experimentos/Peixe-Boi/PB 2501/2024.12 -
> Processamento coleta Krios (com
> tilt)/cryosparc_P18_J556_002_volume_map_sharp_clean.mrc" models #3

> close #1

> close #2

> open
> C:/Users/heloisa.ciol/Downloads/cryosparc_P18_J588_003_volume_map_sharp.mrc

Opened cryosparc_P18_J588_003_volume_map_sharp.mrc as #2, grid size
100,100,100, pixel 2.83, shown at level 0.234, step 1, values float32  

> close #2

> close session

> open
> C:/Users/heloisa.ciol/Downloads/cryosparc_P18_J558_002_volume_map_sharp.mrc

Opened cryosparc_P18_J558_002_volume_map_sharp.mrc as #1, grid size
416,416,416, pixel 0.68, shown at level 0.0181, step 2, values float32  

> surface dust #1 size 6.8

> ui mousemode right "map eraser"

> volume erase #1 center 153.03,175.59,88.128 radius 21.765

Opened cryosparc_P18_J558_002_volume_map_sharp.mrc copy as #3, grid size
416,416,416, pixel 0.68, shown at step 1, values float32  

> save "C:/Users/heloisa.ciol/OneDrive - CNPEM - Centro Nacional de Pesquisa
> em Energia e Materiais/Experimentos/Peixe-Boi/PB 2501/2024.12 -
> Processamento coleta Krios (com
> tilt)/cryosparc_P18_J558_002_volume_map_sharp_clean.mrc" models #3

> ui tool show Segmentations

> ui view fourup

> segmentations mouseModes false

Mouse bindings not saved; ignoring 'mouseModes false'  

> ui view fourup

Exception ignored in: <function Texture.__del__ at 0x000001C1DCA78040>  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\graphics\opengl.py", line 3076, in __del__  
raise OpenGLError('OpenGL texture was not deleted before graphics.Texture
destroyed')  
chimerax.graphics.opengl.OpenGLError: OpenGL texture was not deleted before
graphics.Texture destroyed  

> segmentations mouseModes false

Mouse bindings not saved; ignoring 'mouseModes false'  

> close #

Expected a models specifier or a keyword  
close #  
......^  
Expected a models specifier or a keyword  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\core\commands\logging.py", line 40, in
log_equivalent_command  
command.run(command_text, log_only=True)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3175, in run  
raise UserError(self._error)  
chimerax.core.errors.UserError: Expected a models specifier or a keyword  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2138, in close_map_cb  
log_equivalent_command(v.session, 'close #%s' % v.id_string)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\core\commands\logging.py", line 42, in
log_equivalent_command  
session.logger.info(str(err))  
^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'logger'  
  
AttributeError: 'NoneType' object has no attribute 'logger'  
  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\core\commands\logging.py", line 42, in
log_equivalent_command  
session.logger.info(str(err))  
^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> close session

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\view\cmd.py", line 67, in <lambda>  
REMOVE_MODELS, lambda *args, ses=session: _check_rapid_access(ses, *args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\view\cmd.py", line 55, in _check_rapid_access  
session.ui.main_window.restore_default_main_view()  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\ui\gui.py", line 649, in restore_default_main_view  
self.main_view.clean_up()  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\view\ui.py", line 193, in clean_up  
orthoplane.close()  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 637, in close  
self.view.drawing.delete()  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\volume.py", line 1912, in delete  
Image3d.delete(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 752, in delete  
b.remove_image(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
KeyError: <chimerax.map.volume.VolumeImage object at 0x000001C187468990>  
  
Error processing trigger "remove models":  
KeyError:  
  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> open "C:\Users\heloisa.ciol\OneDrive - CNPEM - Centro Nacional de Pesquisa
> em Energia e Materiais\Experimentos\Peixe-Boi\PB 2501\AF
> model_Dimer\test_67b26_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_000.pdb"
> format pdb

No such file/path: C:\Users\heloisa.ciol\OneDrive - CNPEM - Centro Nacional de
Pesquisa em Energia e Materiais\Experimentos\Peixe-Boi\PB 2501\AF
model_Dimer\test_67b26_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_000.pdb  

> open "C:\Users\heloisa.ciol\OneDrive - CNPEM - Centro Nacional de Pesquisa
> em Energia e Materiais\Experimentos\Peixe-Boi\PB 2501\2024.12 -
> Processamento coleta Krios (com
> tilt)\cryosparc_P18_J558_002_volume_map_sharp_clean.mrc" format mrc

Opened cryosparc_P18_J558_002_volume_map_sharp_clean.mrc as #1, grid size
416,416,416, pixel 0.68, shown at level 0.0178, step 2, values float32  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1318, in
_surfaceChosen  
v.delete()  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\volume.py", line 1912, in delete  
Image3d.delete(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 752, in delete  
b.remove_image(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
KeyError: <chimerax.map.volume.VolumeImage object at 0x000001C18747B850>  
  
KeyError:  
  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1318, in
_surfaceChosen  
v.delete()  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\volume.py", line 1912, in delete  
Image3d.delete(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 752, in delete  
b.remove_image(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
KeyError: <chimerax.map.volume.VolumeImage object at 0x000001C187481790>  
  
KeyError:  
  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1318, in
_surfaceChosen  
v.delete()  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\volume.py", line 1912, in delete  
Image3d.delete(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 752, in delete  
b.remove_image(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
KeyError: <chimerax.map.volume.VolumeImage object at 0x000001C187468990>  
  
KeyError:  
  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> close session

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\view\cmd.py", line 67, in <lambda>  
REMOVE_MODELS, lambda *args, ses=session: _check_rapid_access(ses, *args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\view\cmd.py", line 55, in _check_rapid_access  
session.ui.main_window.restore_default_main_view()  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\ui\gui.py", line 649, in restore_default_main_view  
self.main_view.clean_up()  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\view\ui.py", line 193, in clean_up  
orthoplane.close()  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 627, in close  
self.label.delete()  
^^^^^^^^^^  
AttributeError: 'PlaneViewer' object has no attribute 'label'  
  
Error processing trigger "remove models":  
AttributeError: 'PlaneViewer' object has no attribute 'label'  
  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 627, in close  
self.label.delete()  
^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> open
> C:\Users\heloisa.ciol\Downloads\cryosparc_P18_J558_002_volume_map_sharp.mrc
> format mrc

Opened cryosparc_P18_J558_002_volume_map_sharp.mrc as #1, grid size
416,416,416, pixel 0.68, shown at level 0.0181, step 2, values float32  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1318, in
_surfaceChosen  
v.delete()  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\volume.py", line 1912, in delete  
Image3d.delete(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 752, in delete  
b.remove_image(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
KeyError: <chimerax.map.volume.VolumeImage object at 0x000001C18747B850>  
  
KeyError:  
  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1318, in
_surfaceChosen  
v.delete()  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\volume.py", line 1912, in delete  
Image3d.delete(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 752, in delete  
b.remove_image(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
KeyError: <chimerax.map.volume.VolumeImage object at 0x000001C187481790>  
  
KeyError:  
  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1318, in
_surfaceChosen  
v.delete()  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\volume.py", line 1912, in delete  
Image3d.delete(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 752, in delete  
b.remove_image(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
KeyError: <chimerax.map.volume.VolumeImage object at 0x000001C187468990>  
  
KeyError:  
  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> close session

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\view\cmd.py", line 67, in <lambda>  
REMOVE_MODELS, lambda *args, ses=session: _check_rapid_access(ses, *args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\view\cmd.py", line 55, in _check_rapid_access  
session.ui.main_window.restore_default_main_view()  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\ui\gui.py", line 649, in restore_default_main_view  
self.main_view.clean_up()  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\view\ui.py", line 193, in clean_up  
orthoplane.close()  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 627, in close  
self.label.delete()  
^^^^^^^^^^  
AttributeError: 'PlaneViewer' object has no attribute 'label'  
  
Error processing trigger "remove models":  
AttributeError: 'PlaneViewer' object has no attribute 'label'  
  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 627, in close  
self.label.delete()  
^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> open
> C:/Users/heloisa.ciol/Downloads/cryosparc_P18_J558_002_volume_map_sharp.mrc

Opened cryosparc_P18_J558_002_volume_map_sharp.mrc as #1, grid size
416,416,416, pixel 0.68, shown at level 0.0181, step 2, values float32  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1318, in
_surfaceChosen  
v.delete()  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\volume.py", line 1912, in delete  
Image3d.delete(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 752, in delete  
b.remove_image(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
KeyError: <chimerax.map.volume.VolumeImage object at 0x000001C18747B850>  
  
KeyError:  
  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1318, in
_surfaceChosen  
v.delete()  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\volume.py", line 1912, in delete  
Image3d.delete(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 752, in delete  
b.remove_image(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
KeyError: <chimerax.map.volume.VolumeImage object at 0x000001C187481790>  
  
KeyError:  
  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1318, in
_surfaceChosen  
v.delete()  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\volume.py", line 1912, in delete  
Image3d.delete(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 752, in delete  
b.remove_image(self)  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
KeyError: <chimerax.map.volume.VolumeImage object at 0x000001C187468990>  
  
KeyError:  
  
File "C:\Program Files\ChimeraX 1.8rc202406060152\bin\Lib\site-
packages\chimerax\map\image3d.py", line 1517, in remove_image  
del dbi[image_render]  
~~~^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 537.70
OpenGL renderer: NVIDIA T1000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.4
Locale: pt_BR.cp1252
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: windows

Manufacturer: Dell Inc.
Model: Precision 3660
OS: Microsoft Windows 11 Pro (Build 22631)
Memory: 34,033,348,608
MaxProcessMemory: 137,438,953,344
CPU: 24 13th Gen Intel(R) Core(TM) i7-13700
OSLanguage: pt-BR

Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    asttokens: 2.4.1
    Babel: 2.15.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 1.2.1
    certifi: 2024.6.2
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.17
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.7
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.57
    ChimeraX-AtomicLibrary: 14.0.5
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.4.6
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.12.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.7
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.8rc202406060152
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.4
    ChimeraX-DiffPlot: 1.0
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.10
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.3
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.1
    ChimeraX-MedicalToolbar: 1.0.3
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.16
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.5
    ChimeraX-PDB: 2.7.5
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.4.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.0.15
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.16.5
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.39.1
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.3
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.1
    contourpy: 1.2.1
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.1
    decorator: 5.1.1
    docutils: 0.20.1
    executing: 2.0.1
    filelock: 3.13.4
    fonttools: 4.53.0
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.11.0
    html2text: 2024.2.26
    idna: 3.7
    ihm: 1.0
    imagecodecs: 2024.1.1
    imagesize: 1.4.1
    ipykernel: 6.29.2
    ipython: 8.21.0
    ipywidgets: 8.1.3
    jedi: 0.19.1
    jinja2: 3.1.4
    jupyter-client: 8.6.0
    jupyter-core: 5.7.2
    jupyterlab-widgets: 3.0.11
    kiwisolver: 1.4.5
    line-profiler: 4.1.2
    lxml: 5.2.1
    lz4: 4.3.3
    MarkupSafe: 2.1.5
    matplotlib: 3.8.4
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.0
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 24.0
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pillow: 10.3.0
    pip: 24.0
    pkginfo: 1.10.0
    platformdirs: 4.2.2
    prompt-toolkit: 3.0.46
    psutil: 5.9.8
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pygments: 2.17.2
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.1.2
    pyproject-hooks: 1.1.0
    PyQt6-commercial: 6.6.1
    PyQt6-Qt6: 6.6.3
    PyQt6-sip: 13.6.0
    PyQt6-WebEngine-commercial: 6.6.0
    PyQt6-WebEngine-Qt6: 6.6.3
    python-dateutil: 2.9.0.post0
    pytz: 2024.1
    pywin32: 306
    pyzmq: 26.0.3
    qtconsole: 5.5.1
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.13.0
    setuptools: 69.5.1
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 7.2.6
    sphinx-autodoc-typehints: 2.0.1
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2024.1.30
    tinyarray: 1.2.4
    tornado: 6.4
    traitlets: 5.14.2
    typing-extensions: 4.12.1
    tzdata: 2024.1
    urllib3: 2.2.1
    wcwidth: 0.2.13
    webcolors: 1.13
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.11
    WMI: 1.5.1

Change History (2)

comment:1 by Eric Pettersen, 10 months ago

Component: Unassigned → DICOM
Owner: set to Zach Pearson
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → ui view fourup: OpenGL texture was not deleted before graphics.Texture destroyed

pre-1.8, so possibly already fixed

comment:2 by Zach Pearson, 8 months ago

Resolution: → fixed
Status: assigned → closed

It has been

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