![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Apr 26, 2023:
- 6:20 PM phenix-4-27-23 edited by
- (diff)
- 6:19 PM Ticket #7813 (Complain when multiple default openers exist for a suffix) closed by
- fixed: Didn't add an interface for undoing user designation of a default …
- 5:18 PM Ticket #8905 (Crash in find_clashing_atoms) created by
- […]
- 3:52 PM Ticket #8904 (Crash in QDialog::exec() created by
- […]
- 12:38 PM Ticket #8903 (Crash in ~QGridLayout) created by
- […]
- 12:07 PM Ticket #8902 (Truncated HIS residue) created by
- […] ATMcryo monomer.pdb
- 11:48 AM phenix-4-27-23 edited by
- (diff)
- 11:44 AM phenix-4-27-23 edited by
- (diff)
- 11:37 AM phenix-4-27-23 edited by
- (diff)
- 11:30 AM phenix-4-27-23 edited by
- (diff)
- 11:29 AM phenix-4-27-23 created by
- 11:24 AM Features edited by
- (diff)
- 9:16 AM Ticket #8901 (Crash in removeDockWidget) closed by
- duplicate
- 9:07 AM Ticket #8899 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:05 AM Ticket #8898 (Crash creating ribbons) closed by
- can't reproduce: 1.2.5, as well as possibly being a driver problem
- 7:07 AM Ticket #8901 (Crash in removeDockWidget) created by
- […]
- 1:48 AM Ticket #8900 (glDrawBuffer: invalid operation setting contour level) created by
- […]
- 1:14 AM Ticket #8899 (Crash using File→Open on Windows and/or in return statement) created by
- […]
Apr 25, 2023:
- 7:39 PM Ticket #8898 (Crash creating ribbons) created by
- […]
- 1:55 PM Ticket #8893 (antechamber: Bad CPU type in executable) closed by
- fixed: Exception now caught in both branches
- 11:13 AM Ticket #8896 (No space left on device) closed by
- nonchimerax: Hi Nitesh, Your disk drive ran out of space, so ChimeraX couldn't …
- 11:10 AM Ticket #8895 (Second "camera stereo": buffer is None) closed by
- duplicate
- 9:38 AM Ticket #8892 (Crash saving session) closed by
- can't reproduce
- 9:34 AM Ticket #8891 (Crash in garbage collection) closed by
- duplicate: _cleanup (and its associated problems) has been removed
- 9:20 AM Ticket #8890 (Crash after saving movie) closed by
- can't reproduce
- 8:14 AM Ticket #8885 (add_restraint: __init__() takes 3 positional arguments but 4 were given) closed by
- fixed: This was fixed in the ISOLDE 1.5 release (to get it just install the …
- 4:15 AM Ticket #8897 (mmCIF reading causing "not enough memory" error) created by
- […]
- 12:32 AM Ticket #8896 (No space left on device) created by
- […]
Apr 24, 2023:
- 2:45 PM Ticket #8895 (Second "camera stereo": buffer is None) created by
- […]
- 2:29 PM Ticket #8894 (Second "camera stereo": buffer is None) created by
- […]
- 2:02 PM Ticket #8893 (antechamber: Bad CPU type in executable) created by
- […]
- 1:32 PM Ticket #8892 (Crash saving session) created by
- […]
- 12:53 PM Ticket #8891 (Crash in garbage collection) created by
- […]
- 12:26 PM Ticket #8890 (Crash after saving movie) created by
- […]
- 12:03 PM Ticket #8889 (Restore new session in old ChimeraX) closed by
- limitation
- 12:02 PM Ticket #8888 (mmCIF reading causing "not enough memory" error) closed by
- duplicate: Duplicate of #8815
- 11:59 AM Ticket #8887 (AddH: More than 2 coplanar positions specified) closed by
- can't reproduce: Was asking for the trigonal planar bonding position to an atom that …
- 11:48 AM Ticket #8886 (Modeller: invalid license key) closed by
- duplicate: This error has been made more "user friendly" in later releases.
- 2:01 AM Ticket #8889 (Restore new session in old ChimeraX) created by
- […]
- 1:45 AM Ticket #8888 (mmCIF reading causing "not enough memory" error) created by
- […]
Apr 23, 2023:
- 7:41 PM Ticket #8887 (AddH: More than 2 coplanar positions specified) created by
- […]
- 7:02 AM Ticket #8886 (Modeller: invalid license key) created by
- […]
Apr 21, 2023:
- 11:15 PM Ticket #8885 (add_restraint: __init__() takes 3 positional arguments but 4 were given) created by
- […]
- 1:06 PM Ticket #8862 (AddH facing protons wrong) closed by
- not a bug: One was not reproducible and the other was facing toward a closer …
- 11:22 AM Ticket #8882 (Crash while rendering sequence alignment) closed by
- nonchimerax
- 11:19 AM Ticket #8884 (Crash in garbage collection) closed by
- duplicate: Duplicate of #8673
- 10:56 AM Ticket #8884 (Crash in garbage collection) created by
- […]
- 9:30 AM Ticket #8883 (Add Charges: Unknown class for change tracking: FakeAtom) closed by
- duplicate: Hi Hegar, Thanks for reporting this problem. It has been fixed in …
- 8:35 AM Ticket #8876 (Keyboard interrupt while rendering movie) closed by
- can't reproduce
- 6:19 AM Ticket #8883 (Add Charges: Unknown class for change tracking: FakeAtom) created by
- […]
Apr 20, 2023:
- 8:03 PM Ticket #8882 (Crash while rendering sequence alignment) created by
- […]
- 5:10 PM Ticket #8103 (Shell tool: Qt enum vs. int) closed by
- fixed: Works for me in the current daily build, and the result is quite cool!
- 3:49 PM Ticket #8869 (RFE: include Metal acceleration in 1.6) closed by
- fixed: Okay, I dropped the libs into plugins. I hope those links I mentioned …
- 1:38 PM Ticket #8881 (glClear: invalid framebuffer operation) closed by
- can't reproduce
- 1:37 PM Ticket #8880 (ResidueStepper referencing dead structure) closed by
- duplicate
- 1:34 PM Ticket #8879 (Unknown crash) closed by
- can't reproduce
- 1:31 PM Ticket #8878 (Crash in fork during "devel install") closed by
- can't reproduce
- 10:48 AM Ticket #8873 (Crash opening custom Python script) closed by
- can't reproduce: Hi Thu, I would suggest upgrading to the 1.6 release candidate. …
- 8:42 AM Ticket #8881 (glClear: invalid framebuffer operation) created by
- […]
- 8:25 AM Ticket #8880 (ResidueStepper referencing dead structure) created by
- […]
- 7:20 AM Ticket #8879 (Unknown crash) created by
- […]
- 6:56 AM Ticket #8878 (Crash in fork during "devel install") created by
- […]
- 4:08 AM Ticket #8877 (ResidueStepper referencing dead structure) created by
- […]
Apr 19, 2023:
- 9:31 PM Ticket #8876 (Keyboard interrupt while rendering movie) created by
- […]
- 8:15 PM Ticket #8875 (XMAS: crash in ~QGridLayout()) created by
- […]
- 1:27 PM Ticket #8832 (Hiding models slow) closed by
- fixed: Deleting models was slow because Collection pointer arrays were being …
- 1:17 PM Ticket #8874 (Invalid code signature) created by
- […]
- 12:04 PM Ticket #8873 (Crash opening custom Python script) created by
- […]
- 9:20 AM Ticket #8871 (Crash in removeDockWidget) closed by
- duplicate: Predates the "two widgets in same layout" fix
- 9:09 AM Ticket #8870 (Crash in fork during "devel install") closed by
- nonchimerax
- 8:32 AM Ticket #8868 (Crash showing Rapid Access at startup) closed by
- can't reproduce
- 7:10 AM Ticket #8872 (glClear: invalid framebuffer operation) created by
- […]
- 6:27 AM Ticket #8871 (Crash in removeDockWidget) created by
- […]
- 4:38 AM Ticket #8870 (Crash in fork during "devel install") created by
- […]
- 3:19 AM Ticket #8869 (RFE: include Metal acceleration in 1.6) created by
- […] openmm_metal.zip
Apr 18, 2023:
- 1:36 PM Ticket #8868 (Crash showing Rapid Access at startup) created by
- […]
- 9:53 AM Ticket #8867 (Crash in removeDockWidget) closed by
- duplicate
- 9:45 AM Ticket #8865 (Crash accessing StructureSeq.structure property) closed by
- duplicate
- 9:44 AM Ticket #8864 (QSpiApplication::keyEventError "org.freedesktop.DBus.Error.NoReply") closed by
- can't reproduce: Hi Jiang Xinyi, Thanks for reporting this problem. This is some kind …
- 9:36 AM Ticket #8863 (Crash in removeDockWidget) closed by
- duplicate: This is the last build that doesn't have the half-docked-widget fix.
- 8:59 AM Ticket #8867 (Crash in removeDockWidget) created by
- […]
- 7:11 AM Ticket #8866 (Dead PositionRestraintMgr (and other problems)) created by
- […]
- 6:29 AM Ticket #8865 (Crash accessing StructureSeq.structure property) created by
- […]
- 3:18 AM Ticket #8864 (QSpiApplication::keyEventError "org.freedesktop.DBus.Error.NoReply") created by
- […]
Apr 17, 2023:
- 5:20 PM Ticket #8863 (Crash in removeDockWidget) created by
- […]
- 1:49 PM Ticket #8861 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- duplicate
- 1:37 PM Ticket #8856 (Crash in event loop) closed by
- can't reproduce
- 1:36 PM Ticket #8855 (Crash in event loop) closed by
- can't reproduce
- 1:34 PM Ticket #8854 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Linux
- 1:22 PM Ticket #8862 (AddH facing protons wrong) created by
- […] bug.cxs
- 12:59 PM Ticket #8852 (Crash showing Rapid Access at startup) closed by
- can't reproduce
- 11:51 AM Ticket #8857 (ChimeraX bug report submission) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/49fb1ca087afcc950389cc21069098 …
- 11:49 AM Ticket #8849 (Build Structure: wrapped C/C++ object of type QLabel has been deleted) closed by
- duplicate: Hi Jitendra, Thanks for reporting this problem. It has been fixed in …
- 11:39 AM Ticket #8846 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 11:38 AM Ticket #8845 (Restore new session in old ChimeraX) closed by
- limitation
- 11:37 AM Ticket #8844 (Crash handling mouse down event) closed by
- can't reproduce
- 11:35 AM Ticket #8843 (UniProt fetch: list index out of range) closed by
- duplicate
- 11:31 AM Ticket #8861 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 11:30 AM Ticket #8860 (Keyboard interrupt while saving .mrc file) created by
- […]
- 7:59 AM Ticket #8859 (View transition can be slow) created by
- […]
- 7:52 AM Ticket #8858 (Saving shift_and_scale uses numpy array as boolean) created by
- […]
- 7:35 AM Ticket #8857 (ChimeraX bug report submission) created by
- […]
- 4:24 AM Ticket #8856 (Crash in event loop) created by
- […]
- 4:08 AM Ticket #8855 (Crash in event loop) created by
- […]
- 4:06 AM Ticket #8854 (Crash showing Rapid Access at startup) created by
- […]
- 3:50 AM Ticket #8853 (Impossible model hierarchy in saved session) created by
- […]
- 3:47 AM Ticket #8852 (Crash showing Rapid Access at startup) created by
- […]
- 3:37 AM Ticket #8851 (MemoryError opening mmCIF) created by
- […]
- 2:50 AM Ticket #8850 (Problem creating pseudobond group during session restore) created by
- […]
- 1:59 AM Ticket #8849 (Build Structure: wrapped C/C++ object of type QLabel has been deleted) created by
- […]
Apr 15, 2023:
- 8:57 AM Ticket #8848 (Install StarMap from toolshed: ImportError: No module named pip) created by
- […]
- 7:12 AM Ticket #8847 (MemoryError opening mmCIF) created by
- […]
Apr 14, 2023:
- 11:19 PM Ticket #8846 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 7:20 PM Ticket #8845 (Restore new session in old ChimeraX) created by
- […]
- 5:40 PM Ticket #8844 (Crash handling mouse down event) created by
- […]
- 5:34 PM Ticket #8828 (Bad mmCIF → CRYST1 translation) closed by
- fixed
- 3:08 PM Ticket #8843 (UniProt fetch: list index out of range) created by
- […]
- 12:10 PM Ticket #8839 (Error while hovering mouse in VR) closed by
- fixed: Fixed in ChimeraX 1.6 release candidate and daily build (available …
- 11:35 AM Ticket #8837 (Scalebar causes continuous redraw during movie recording) closed by
- can't reproduce: I do not observe any unexpected movie frames with a 2D label shown. …
- 11:01 AM Ticket #8842 (Allow a text label with scalebar) created by
- Tristan asks if the scalebar command could have an option to display a …
- 10:54 AM Ticket #8836 (Movie creation: No space left on device) closed by
- nonchimerax: This ChimeraX error "OSError: [Errno 28] No space left on device" …
- 10:52 AM Ticket #8834 (AdaptiveDihedralRestraintMgr creation for closed structure) closed by
- fixed: It used to be that closing the working model with an active simulation …
- 10:51 AM Ticket #8841 (Qt fatal error: Failed to initialize graphics backend for OpenGL.) closed by
- can't reproduce
- 10:48 AM Ticket #8833 (Using dead structure in Isolde.selected_atoms) closed by
- fixed: This is fixed in the ISOLDE 1.6.dev builds (and possibly in 1.5 - I …
- 10:34 AM Ticket #8835 (AdaptiveDihedralRestraintMgr creation for closed structure) closed by
- duplicate
- 6:48 AM Ticket #8841 (Qt fatal error: Failed to initialize graphics backend for OpenGL.) created by
- […]
- 6:31 AM Ticket #8840 (Mac M1 VR error with meeting command when other users start VR) created by
- […]
- 6:20 AM Ticket #8839 (Error while hovering mouse in VR) created by
- […]
- 6:06 AM Ticket #8838 (Clipper requirement produces traceback) created by
- […]
- 5:40 AM Ticket #8837 (Scalebar causes continuous redraw during movie recording) created by
- […]
- 3:55 AM Ticket #8836 (Movie creation: No space left on device) created by
- […]
- 2:37 AM Ticket #8835 (AdaptiveDihedralRestraintMgr creation for closed structure) created by
- […]
- 2:27 AM Ticket #8834 (AdaptiveDihedralRestraintMgr creation for closed structure) created by
- […]
- 2:14 AM Ticket #8833 (Using dead structure in Isolde.selected_atoms) created by
- […]
Apr 13, 2023:
- 7:30 PM 2023-4-13 edited by
- (diff)
- 7:15 PM Ticket #8831 (AlphaFold coloring: trying to get metadata attribute from Volume) closed by
- fixed: Fixed in 1.6 release candidate and daily builds April 14 and later. …
- 5:45 PM Ticket #8830 (MemoryError opening mmCIF) closed by
- can't reproduce
- 4:26 PM Ticket #8829 ("measure center" and "measure inertia" not using transformed position ...) closed by
- fixed: Fixed in 1.6. The measure center and measure inertia commands were …
- 4:21 PM Ticket #8826 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Hi Hamish, Thanks for reporting this problem. I recommend you …
- 3:52 PM Ticket #8832 (Hiding models slow) created by
- […]
- 2:43 PM Ticket #8831 (AlphaFold coloring: trying to get metadata attribute from Volume) created by
- […]
- 1:42 PM AddTracUser edited by
- (diff)
- 11:42 AM Ticket #8830 (MemoryError opening mmCIF) created by
- […]
- 10:27 AM Ticket #8829 ("measure center" and "measure inertia" not using transformed position ...) created by
- The centroid marker and inertia ellipsoid show up in the original …
- 10:19 AM Ticket #8828 (Bad mmCIF → CRYST1 translation) created by
- […]
- 9:07 AM Ticket #8827 (Out of memory after opening small mmCIF 7phr on Mac. Also ssl ...) created by
- […]
Apr 12, 2023:
- 11:33 PM Ticket #8826 (Crash showing Rapid Access at startup) created by
- […]
- 3:57 PM Ticket #8824 (EMDB fetch timeout) closed by
- nonchimerax: ChimeraX 0.93, wow! Apparently the EMDB ftp site did not respond. …
- 3:39 PM Ticket #8823 (Crash deleting atomic symmetry model(?)) closed by
- can't reproduce: The Python traceback for the crash is during ChimeraX startup. The …
- 3:21 PM 2023-4-13 edited by
- (diff)
- 2:29 PM Ticket #8825 (Session restore fails when 2D label id changed to be a submodel of a ...) created by
- […]
- 9:00 AM Ticket #8822 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: Hi, We believe this problem is fixed in newer versions of ChimeraX, …
- 8:56 AM Ticket #8821 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 6:47 AM Ticket #8824 (EMDB fetch timeout) created by
- […]
- 4:47 AM Ticket #8823 (Crash deleting atomic symmetry model(?)) created by
- […]
Apr 11, 2023:
- 10:37 PM Ticket #8761 (Crash in readcif::CIFFile::parse) closed by
- fixed: Thank you for following up on this. One more possible fix. Option …
- 7:22 PM Ticket #8509 (Write GLTF files directly to Quest 2 headset) closed by
- fixed
- 6:35 PM Ticket #8822 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 4:13 PM Ticket #4748 (execute command when models opened) closed by
- not a bug: It seems that Tony's OpenCommands bundle obviates the need for this.
- 2:14 PM Ticket #4665 (RFE: matchmaker "reportMatrix" option) closed by
- fixed: Okay, there is now a directly analogous 'reportMatrix' option to the …
- 12:25 PM Ticket #7643 (Mac ARM64 build broken: pyproject.toml lz4 compile uses system python) closed by
- fixed: This ticket should be resolved by cleaning the CONFINCLUDEPY, …
- 11:57 AM Ticket #6599 (RFE: Blast protein option to "List only best-matching chain per PDB entry") closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/d87561c3ac60cb8e5cfdf4ae232b23 …
- 11:48 AM Ticket #8821 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 10:56 AM Ticket #8739 (StarMap: 'NoneType' object has no attribute 'set_value') closed by
- fixed: The command stmset is mainly used to restore the StarMap session …
- 10:06 AM 2023-4-13 created by
- 10:03 AM DeveloperMeetings edited by
- (diff)
- 9:41 AM Ticket #8820 (Crash in removeDockWidget) closed by
- duplicate: This was the last release candidate that did not have the …
- 9:37 AM Ticket #8819 (Unknown crash at startup) closed by
- can't reproduce: Linux
- 9:19 AM Ticket #8813 (Crash using color chooser) closed by
- can't reproduce
- 9:01 AM Ticket #8820 (Crash in removeDockWidget) created by
- […]
- 8:28 AM Ticket #8790 (ISOLDE: residue_graph: edges should be a n x 2 array of unsigned ints) closed by
- fixed: The problem was three BEF residues in the model, which each contain …
- 4:02 AM Ticket #8819 (Unknown crash at startup) created by
- […]
- 1:35 AM Ticket #8818 (Read mmCIF: not enough memory) created by
- […] problem in chimerax.PNG
Apr 10, 2023:
- 11:22 PM Ticket #8817 (Unknown crash) created by
- […]
- 5:36 PM Ticket #5601 (Log templates from mmCIF files for theoretical models) closed by
- fixed: Okay, Implemented local scores. Each score becomes a residue …
- 4:57 PM Ticket #8816 (Graphics driver mismatch) created by
- […]
- 4:43 PM Ticket #8788 (MemoryError opening mmCIF files) closed by
- can't reproduce: See #8815.
- 4:43 PM Ticket #8742 (MemoryError open mmCIF) closed by
- can't reproduce: See #8815.
- 4:02 PM Dev2022-4-10 edited by
- (diff)
- 3:24 PM Ticket #8815 (mmCIF reading causing "not enough memory" error) created by
- Summarize existing (anonymous) tickets that show an not enough memory …
- 3:22 PM Ticket #7303 (Black screen on Ubuntu 22.04) closed by
- can't reproduce
- 3:15 PM Ticket #8814 (ISOLDE: assigned geometry mismatch) created by
- […] Screenshot 2023-04-11 at 00.09.49.png
- 2:18 PM Ticket #8813 (Crash using color chooser) created by
- […]
- 11:30 AM Ticket #6255 (Make DICOM reader read time series from 2D images) closed by
- fixed: This series has been readable for months; while it broke for a little …
- 11:29 AM Ticket #8710 (Mammogram from VICTRE doesn't have correct slice ordering) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/c4d6957758513a572fc9d3c2a9e61e …
- 11:29 AM Ticket #8517 (Some TCIA dicoms open at an angle that makes them look invisible) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/c4d6957758513a572fc9d3c2a9e61e …
- 11:28 AM Ticket #8627 (Graphics crash when DICOM has unexpected size relative to other images ...) closed by
- fixed: I …
- 11:27 AM Ticket #8809 (Slow performance) closed by
- nonchimerax: See https://www.rbvi.ucsf.edu/chimerax/issues.html#linux_graphics
- 11:22 AM Ticket #8808 (Crash forking ffmpeg) closed by
- nonchimerax: I think we have only seen these fork crashes on ARM Mac running Intel …
- 11:20 AM Ticket #8806 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- nonchimerax: OpenGL probably not functioning. Could be remote display.
- 11:18 AM ChangeLog edited by
- (diff)
- 11:18 AM Ticket #8804 (Error in glClearColor) closed by
- nonchimerax: Looks like a graphics driver problem, RTX 4060 with March 2023 driver …
- 11:04 AM Ticket #8805 (Read mmCIF: not enough memory) closed by
- worksforme: Can't reproduce this.
- 10:47 AM Ticket #8812 (Crash in garbage collection during new object allocation) closed by
- duplicate
- 10:43 AM Ticket #8811 (Restore new session in old ChimeraX) closed by
- limitation: Hi Jamaine, Though sessions saved in old versions of ChimeraX are …
- 10:38 AM Ticket #8810 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Linux
- 10:14 AM Ticket #8803 (Unknown crash) closed by
- can't reproduce: Seems like a QWebEngine crash
- 10:07 AM Ticket #8812 (Crash in garbage collection during new object allocation) created by
- […]
- 8:51 AM Ticket #8811 (Restore new session in old ChimeraX) created by
- […]
- 2:25 AM Ticket #8810 (Crash showing Rapid Access at startup) created by
- […]
- 1:38 AM Ticket #8809 (Slow performance) created by
- […]
Apr 9, 2023:
- 7:35 PM Ticket #8808 (Crash forking ffmpeg) created by
- […]
- 12:43 PM Ticket #8807 (Crash in msgpack_deserialize during session restore) created by
- […]
- 12:21 PM Ticket #8806 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 9:20 AM Ticket #8805 (Read mmCIF: not enough memory) created by
- […]
Apr 8, 2023:
Apr 7, 2023:
- 4:19 PM Ticket #6208 (Crash deleting structure) closed by
- fixed: This no longer reproduces in the current ChimeraX, so other changes …
- 3:49 PM Ticket #8324 (Crash in removeDockWidget from clicking on a half-docked panel) closed by
- fixed: Fixed in 1.6.
- 2:35 PM Ticket #6821 (Allow 'info' command to write directly to a file) closed by
- fixed: In tomorrow's daily build, all the 'info' commands (except 'info …
- 2:02 PM Dev2022-4-10 edited by
- (diff)
- 2:02 PM Dev2022-4-10 created by
- 2:00 PM DeveloperMeetings edited by
- (diff)
- 12:11 PM Ticket #8799 (Tomogram black in LookSee unless scaled large) closed by
- fixed: Fixed. I changed the LookSee scaling code so that it scales the mesh …
- 11:52 AM Ticket #8803 (Unknown crash) created by
- […]
- 11:03 AM Ticket #8794 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- nonchimerax: Qt can't start on Linux.
- 11:02 AM Ticket #8796 (Floating-point exception in glBufferSubData) closed by
- nonchimerax: Apple's AMD graphics driver crashed. Unfortunately Apple deprecated …
- 10:28 AM Ticket #8508 (Crash in removeDockWidget) closed by
- duplicate: No reply from user. Probable duplicate of #8324
- 9:55 AM Ticket #8801 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) closed by
- duplicate: Hi Jitendra, Thanks for reporting this problem. It has been fixed so …
- 4:57 AM Ticket #8802 (Crash estimating association parameters) created by
- […]
Apr 6, 2023:
- 11:11 PM Ticket #8801 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) created by
- […]
- 7:45 PM Ticket #8797 (Scene bounds not update after rename command changes model hierarchy) closed by
- fixed: Fixed. Not in 1.6. The rename command changed the model hierarchy. …
- 6:53 PM Ticket #8800 (surface transform command scale option erases vertex colors) closed by
- fixed: Fixed in 1.6. Setting new surface geometry erased vertex coloring and …
- 6:41 PM Ticket #8795 (surface transform command: AttributeError: 'NoneType' object has no ...) closed by
- fixed: Fixed. Was scaling empty surface models that had vertices = None.
- 6:33 PM Ticket #8800 (surface transform command scale option erases vertex colors) created by
- […]
- 6:20 PM Ticket #8799 (Tomogram black in LookSee unless scaled large) created by
- Begin forwarded message: From: "Schmid, Michael F." Subject: …
- 6:16 PM Ticket #8798 (ChimeraX hangs at startup checking for updates) created by
- Begin forwarded message: From: Tom Ferrin Subject: very long startup …
- 5:55 PM Ticket #8797 (Scene bounds not update after rename command changes model hierarchy) created by
- […]
- 5:26 PM Ticket #8796 (Floating-point exception in glBufferSubData) created by
- […]
- 5:25 PM Ticket #8795 (surface transform command: AttributeError: 'NoneType' object has no ...) created by
- […]
- 4:58 PM 2023-4-6 edited by
- (diff)
- 4:53 PM 2023-4-6 edited by
- (diff)
- 4:53 PM 2023-4-6 edited by
- (diff)
- 3:51 PM Ticket #8794 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 1:31 PM Ticket #8792 (Graphics crash, macOS 12.6.3, Intel Iris Graphics 6100) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 1:29 PM Ticket #8791 (read_full_array: Device not configured) closed by
- not a bug: User opened MRC map and later when ChimeraX tried to read data …
- 9:55 AM Ticket #8793 (Restore new session in old ChimeraX) closed by
- limitation
- 7:40 AM Ticket #8793 (Restore new session in old ChimeraX) created by
- […]
Apr 5, 2023:
- 5:46 PM Ticket #8789 (Modeller: 'NoneType' object has no attribute 'name') closed by
- duplicate
- 5:20 PM Ticket #8786 (Crash in removeDockWidget) closed by
- can't reproduce: Probable duplicate of #8324
- 4:46 PM Ticket #5729 (sqm suggestions) closed by
- fixed: Charge computation falls back to no -ek flag if using the flag result …
- 1:40 PM Ticket #8792 (Graphics crash, macOS 12.6.3, Intel Iris Graphics 6100) created by
- […]
- 1:36 PM Ticket #8791 (read_full_array: Device not configured) created by
- […]
- 12:37 PM Ticket #8790 (ISOLDE: residue_graph: edges should be a n x 2 array of unsigned ints) created by
- […]
- 12:12 PM Ticket #8789 (Modeller: 'NoneType' object has no attribute 'name') created by
- […]
- 12:02 PM Ticket #8788 (MemoryError opening mmCIF files) created by
- […]
- 11:07 AM Ticket #8787 (Give users a way to access the Imaging Data Commons from ChimeraX) created by
- 9:52 AM Ticket #8785 (Restore new session in old ChimeraX) closed by
- limitation
Apr 4, 2023:
- 10:38 PM Ticket #1880 (Have macOS installer dmg show arrow to drag ChimeraX to Applications) closed by
- fixed: I installed the Python package dmgbuild on the Mac build machines and …
- 5:42 PM NIAID2022 edited by
- (diff)
- 5:28 PM Ticket #8783 (Crash emitting color_pause signal) closed by
- fixed: Maybe fixed in devel branch, not in 1.6. I wasn't able to reproduce …
- 2:11 PM Ticket #8786 (Crash in removeDockWidget) created by
- […]
- 12:48 PM Ticket #8785 (Restore new session in old ChimeraX) created by
- […]
- 10:41 AM Ticket #8782 (Crash closing tool window) closed by
- can't reproduce
- 10:34 AM Ticket #8777 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:32 AM Ticket #8775 (saving image: glClear: invalid framebuffer operation) closed by
- can't reproduce: Error drawing status line. Mac laptop with external display connected …
- 10:27 AM 2023-4-6 created by
- 10:26 AM DeveloperMeetings edited by
- (diff)
- 10:00 AM Ticket #8781 (Unknown crash at startup) closed by
- can't reproduce
- 9:57 AM Ticket #8780 (Unsupported scale factor (0.000000) detected on Display0) closed by
- can't reproduce: *Probably* the same as #8226. The user does have two displays.
- 9:49 AM Ticket #8778 (2D Builder: HTTP Error 500: Internal Server Error) closed by
- duplicate
- 9:23 AM Ticket #8784 (Start 2D Builder: ImportError: cannot import name 'MolBuilder' from ...) created by
- […]
- 9:03 AM Ticket #8783 (Crash emitting color_pause signal) created by
- […]
- 8:21 AM Ticket #8782 (Crash closing tool window) created by
- […]
- 7:35 AM Ticket #8781 (Unknown crash at startup) created by
- […]
- 6:06 AM Ticket #8780 (Unsupported scale factor (0.000000) detected on Display0) created by
- […]
- 1:55 AM Ticket #8779 (Unknown crash) created by
- […]
Apr 3, 2023:
- 6:31 PM Ticket #8778 (2D Builder: HTTP Error 500: Internal Server Error) created by
- […]
- 6:13 PM Ticket #8777 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics) created by
- […]
- 6:12 PM Ticket #8776 (2D Builder: HTTP Error 500: Internal Server Error) created by
- […]
- 4:13 PM Ticket #8774 (Close session: 'Bond' object has no attribute 'rotaters') closed by
- fixed
- 4:06 PM Dev2022-4-3 edited by
- (diff)
- 4:06 PM Dev2022-4-3 edited by
- (diff)
- 3:45 PM Ticket #6505 (Chimera→ChimeraX session converter) closed by
- fixed: It sounds like we've done all of the upfront work on this and can open …
- 3:04 PM Dev2022-4-3 created by
- 3:02 PM DeveloperMeetings edited by
- (diff)
- 2:58 PM Ticket #8746 (ORCA file: 'utf-8' codec can't decode byte) closed by
- fixed: I have made the the generic opener code fall back to utf-16 and then …
- 2:36 PM Ticket #8775 (saving image: glClear: invalid framebuffer operation) created by
- […]
- 1:01 PM Ticket #8774 (Close session: 'Bond' object has no attribute 'rotaters') created by
- […]
- 12:35 PM Ticket #8770 (Cartoon style: float division by zero) closed by
- fixed: Fixed in 1.6 and daily build. Made cartoon style width, thickness, …
- 12:26 PM Ticket #8769 (ESMFold: name 'SearchError' is not defined) closed by
- fixed: Fixed. ChimeraX was trying to search the ESMFold database for a …
- 12:13 PM Ticket #8771 (MemoryError saving map in session) closed by
- limitation: Opened 42 maps each of size 600 x 600 x 600 with float values (864 …
- 12:07 PM Ticket #8773 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- nonchimerax
- 11:56 AM ChangeLog edited by
- (diff)
- 11:56 AM Ticket #8768 (ViewDockX: QEventLoop' object has no attribute 'exec_) closed by
- duplicate
- 11:54 AM Ticket #8767 (ViewDockX: QEventLoop' object has no attribute 'exec_) closed by
- duplicate
- 11:53 AM Ticket #8766 (XMAS: crash in ~QGridLayout()) closed by
- duplicate: duplicate of #8575
- 11:49 AM Ticket #8765 (Crash in modal dialog) closed by
- can't reproduce
- 11:47 AM Ticket #8764 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 11:41 AM Ticket #8763 ("seq_viewer" keyword now just "viewer") closed by
- duplicate
- 11:38 AM Ticket #8762 (MD Viewer: self.atomLocation[0]: list index out of range) closed by
- not a bug: Not a multi-model PDB file
- 11:35 AM Ticket #8756 (Switching background color loses mouse wheel zoom) closed by
- not a bug: The mouse pointer needs to be in the graphics pane for the …
- 11:25 AM Ticket #8760 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 11:23 AM Ticket #8759 (Crash in QMainWindow::removeDockWidget) closed by
- can't reproduce
- 11:21 AM Ticket #8758 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- nonchimerax: Qt can't use OpenGL.
- 11:20 AM Ticket #8757 (Graphics crash, macOS 10.15.7, NVIDIA GeForce GTX 780M) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:06 AM Ticket #8744 (TOML metadata: Reference url none breaks 'open formats' table) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/c3b95044030a1153cf14295ae92847 …
- 9:16 AM Ticket #8773 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 9:09 AM Ticket #8772 (isolde residue stepper referencing dead structure) created by
- […]
- 6:47 AM Ticket #8771 (MemoryError saving map in session) created by
- […]
Apr 2, 2023:
- 11:17 PM Ticket #8770 (Cartoon style: float division by zero) created by
- […]
- 9:49 PM Ticket #8769 (ESMFold: name 'SearchError' is not defined) created by
- […]
- 9:18 PM Ticket #8768 (ViewDockX: QEventLoop' object has no attribute 'exec_) created by
- […]
- 9:18 PM Ticket #8767 (ViewDockX: QEventLoop' object has no attribute 'exec_) created by
- […]
- 8:22 PM Ticket #8766 (XMAS: crash in ~QGridLayout()) created by
- […]
- 7:58 PM Ticket #8765 (Crash in modal dialog) created by
- […]
- 9:40 AM Ticket #8764 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 5:30 AM Ticket #8763 ("seq_viewer" keyword now just "viewer") created by
- […]
- 1:11 AM Ticket #8762 (MD Viewer: self.atomLocation[0]: list index out of range) created by
- […]
- 12:08 AM Ticket #8761 (Crash in readcif::CIFFile::parse) created by
- […]
Apr 1, 2023:
- 6:01 PM ChangeLog edited by
- (diff)
- 3:07 PM Ticket #8760 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 12:13 PM Ticket #8759 (Crash in QMainWindow::removeDockWidget) created by
- […]
Mar 31, 2023:
- 10:28 PM Ticket #8758 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 4:55 PM Ticket #8757 (Graphics crash, macOS 10.15.7, NVIDIA GeForce GTX 780M) created by
- […]
- 4:06 PM Ticket #8756 (Switching background color loses mouse wheel zoom) created by
- […]
- 2:58 PM Ticket #8753 (glTexImage3D: out of memory) closed by
- limitation: As the error message said, the graphics ran out of memory. Not …
- 2:55 PM Ticket #8748 (Crash (saving image?)) closed by
- nonchimerax: The real fix is not to use ancient CentOS 7. But I know SBGrid is …
- 2:52 PM Ticket #8749 (Crash saving image) closed by
- nonchimerax: Does it crash on every image save? For instance if you open no data …
- 1:51 PM Ticket #8754 (MatchMaker: wrapped C/C++ object of type ChainMenuButton has been deleted) closed by
- duplicate
- 1:39 PM Ticket #8752 (Centroid distances) closed by
- duplicate: Hi Dawid, Thanks for reporting this problem. It has been fixed in …
- 1:23 PM Ticket #8751 (Crash saving image) closed by
- duplicate
- 1:21 PM Ticket #8750 (Crash saving image) closed by
- duplicate
- 5:30 AM Ticket #8755 ("select clear" during simulation: Called setParameter() with invalid ...) created by
- […]
- 2:56 AM Ticket #8754 (MatchMaker: wrapped C/C++ object of type ChainMenuButton has been deleted) created by
- […]
Mar 30, 2023:
- 5:55 PM Ticket #8541 (QWindowsWindow::setDarkBorderToWindow: Unable to set dark window border) closed by
- fixed: Fixed. Made Qt message logging suppress this warning.
- 5:54 PM Ticket #8753 (glTexImage3D: out of memory) created by
- […]
- 5:49 PM Ticket #8752 (Centroid distances) created by
- […]
- 1:25 PM 2023-3-30 edited by
- (diff)
- 12:40 PM Ticket #8751 (Crash saving image) created by
- […]
- 12:22 PM Ticket #8750 (Crash saving image) created by
- […]
- 12:14 PM Ticket #8749 (Crash saving image) created by
- […]
- 12:12 PM Ticket #8748 (Crash (saving image?)) created by
- […]
- 8:35 AM Ticket #8745 (Crash getting text input from Save dialog?) closed by
- can't reproduce
- 8:33 AM Ticket #8747 (ORCA file: could not convert string to float: 'DENSITY') created by
- […] methanol.inp
- 7:59 AM Ticket #8746 (ORCA file: 'utf-8' codec can't decode byte) created by
- […]
- 2:43 AM Ticket #8745 (Crash getting text input from Save dialog?) created by
- […]
Mar 29, 2023:
- 5:18 PM 2023-3-30 edited by
- (diff)
- 3:19 PM Ticket #5687 (AddH: spurious OXT) closed by
- fixed: Not really sure if the mmCIF or PDB treatment is better (lean to PDB), …
- 2:10 PM Ticket #8743 (glDrawBuffer: invalid operation) closed by
- can't reproduce: Possible graphics driver bug. Selecting a PDB model. Very old …
- 2:08 PM Ticket #8741 (Save GLTF: list index out of range) closed by
- can't reproduce: Wow ChimeraX 0.8. The gltf writing code has totally changed so not …
- 1:25 PM Ticket #8744 (TOML metadata: Reference url none breaks 'open formats' table) created by
- XML bundle builder would not include "reference_url: None" in …
- 10:13 AM Ticket #8743 (glDrawBuffer: invalid operation) created by
- […]
- 9:39 AM Ticket #8740 (mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') closed by
- duplicate: Hi Haaris, This bug was fixed in the 1.5 production release (and the …
- 6:09 AM Ticket #8742 (MemoryError open mmCIF) created by
- […]
- 2:15 AM Ticket #8741 (Save GLTF: list index out of range) created by
- […]
- 1:07 AM Ticket #8740 (mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') created by
- […]
Mar 28, 2023:
- 7:44 PM Ticket #8739 (StarMap: 'NoneType' object has no attribute 'set_value') created by
- […]
- 2:56 PM 2023-3-30 created by
- 2:53 PM DeveloperMeetings edited by
- (diff)
- 11:12 AM Ticket #8738 (Cannot import name 'MolBuilder' from 'SEQCROW.tools') closed by
- can't reproduce
- 9:32 AM Ticket #8736 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- nonchimerax: Maybe the most common cause of this is ssh remote display with …
- 8:53 AM Ticket #8737 (Crash in event loop) closed by
- can't reproduce
- 7:38 AM Ticket #8738 (Cannot import name 'MolBuilder' from 'SEQCROW.tools') created by
- […]
- 7:22 AM Ticket #8737 (Crash in event loop) created by
- […]
- 4:11 AM Ticket #8736 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 2:32 AM Ticket #8734 (Qscore: ValueError: min() arg is an empty sequence) closed by
-
fixed: Fixed. Already had a sanity-check
if residues is None:in there, but …
Mar 27, 2023:
- 6:09 PM Ticket #8720 (Distance from centroid to atoms non-functional) closed by
- fixed: Fixed in both the daily build and the 1.6 release candidate.
- 5:14 PM Ticket #8689 (Blank Qt GUI after deiconifying on Mac) closed by
- fixed: Fixed in 1.6 and daily builds. Commenting out the graphics window …
- 4:21 PM Dev2022-3-27 edited by
- (diff)
- 4:20 PM Dev2022-3-27 edited by
- (diff)
- 3:18 PM Dev2022-3-27 created by
- 3:17 PM DeveloperMeetings edited by
- (diff)
- 3:00 PM Ticket #8735 (Add menu entry to clear file history) closed by
- fixed: Done.
- 2:59 PM Ticket #8735 (Add menu entry to clear file history) created by
- On Mar 25, 2023, at 2:25 PM, Boaz Shaanan via ChimeraX-users wrote: …
- 2:55 PM Ticket #8728 (Crash opening mmCIF/CIF) closed by
- can't reproduce: Need the GLT3-out-open00000.cif to reproduce. Looks like it died in …
- 1:59 PM Ticket #8731 (Keyboard interrupt in graphics redraw) closed by
- can't reproduce: There is no information about what went wrong in this bug report. All …
- 1:55 PM Ticket #8730 (Opening AlphaFold JSON as MOLE) closed by
- duplicate: Several months ago I improved the error message and removed the …
- 1:51 PM Ticket #8727 (AlphaFold: Downloaded prediction file not found) closed by
- can't reproduce: Would be great if we could track down the removeDockWidget() Qt crash. …
- 1:34 PM Ticket #8732 (Restore BLAST results from session: 'NoneType' object has no attribute ...) closed by
- fixed: Fixed on develop and release/v1.6
- 1:27 PM Ticket #8734 (Qscore: ValueError: min() arg is an empty sequence) created by
- […]
- 1:15 PM Ticket #8733 (Site down) closed by
- fixed: Hi Matt, Thanks for reporting this problem. The site was down this …
- 1:09 PM Ticket #8729 (Crash in to_h36) closed by
- can't reproduce: Don't see how that routine can crash
- 12:34 PM Ticket #8712 (Graphics crash, macOS 11.6.2, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash. I think the long ctypes C++ stack …
- 12:30 PM Ticket #8713 (OpenGL errors at startup) closed by
- nonchimerax: These errors starting ChimeraX are because of problems with your …
- 12:24 PM Ticket #8711 (Bug: black spots appear when saving images with a silhouette) closed by
- nonchimerax: These artifacts are a graphics driver problem. Are you on a Mac? …
- 12:03 PM Ticket #8723 (SEQCROW: cannot remove 1 hydrogens from an atom with 0 hydrogens) closed by
- duplicate: Duplicate of #8725
- 11:59 AM Ticket #8724 (SEQCROW: cannot remove 1 hydrogens from an atom with 0 hydrogens) closed by
- duplicate
- 11:51 AM Ticket #8722 (Execution of 'Structure' object's 'model_color' property raised ...) closed by
- can't reproduce: This error is from the old scheme of custom-attribute handling, which …
- 11:46 AM Ticket #8721 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 11:22 AM Ticket #8719 (Table widget: float() argument must be a string or a number, not 'NoneType') closed by
- duplicate: Hi Jitendra, Thanks for reporting this problem. It is fixed in the …
- 11:18 AM Ticket #8718 (Table widget: float() argument must be a string or a number, not 'NoneType') closed by
- duplicate
- 11:17 AM Ticket #8717 (Table widget: float() argument must be a string or a number, not 'NoneType') closed by
- duplicate: Caused by clicking on the header (i.e. sorting) for color or other …
- 11:14 AM Ticket #8716 (Crash in event loop) closed by
- can't reproduce
- 11:13 AM Ticket #8715 (Crash in event loop) closed by
- can't reproduce
- 8:31 AM Ticket #8733 (Site down) created by
- […]
- 3:02 AM Ticket #8732 (Restore BLAST results from session: 'NoneType' object has no attribute ...) created by
- […]
- 1:47 AM Ticket #8731 (Keyboard interrupt in graphics redraw) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
