Opened 3 years ago

Closed 3 years ago

#8808 closed defect (nonchimerax)

Crash forking ffmpeg

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Input/Output Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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{
  "uptime" : 1700000,
  "procLaunch" : "2023-04-06 11:38:28.9442 -0600",
  "procRole" : "Foreground",
  "version" : 2,
  "userID" : 501,
  "deployVersion" : 210,
  "modelCode" : "MacBookAir10,1",
  "procStartAbsTime" : 39624842505627,
  "coalitionID" : 162878,
  "osVersion" : {
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    "build" : "21F79",
    "releaseType" : "User"
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  "captureTime" : "2023-04-09 20:35:25.4320 -0600",
  "incident" : "E1797E2F-E5D8-4DEF-B728-A07D0DD73A12",
  "bug_type" : "309",
  "pid" : 22142,
  "procExitAbsTime" : 41475151810616,
  "translated" : true,
  "cpuType" : "X86-64",
  "procName" : "ChimeraX",
  "procPath" : "\/Applications\/ChimeraX-1.5.app\/Contents\/MacOS\/ChimeraX",
  "bundleInfo" : {"CFBundleShortVersionString":"1.5.0","CFBundleVersion":"1.5.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
  "storeInfo" : {"deviceIdentifierForVendor":"4123CA06-579B-5B5E-ADF8-925B44645E06","thirdParty":true},
  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "FFC63FB5-7EB8-D2E5-48FC-DA54BF3B8966",
  "wakeTime" : 1817,
  "sleepWakeUUID" : "E4A1B5AA-7B7E-4F90-BA05-17F60D83AD2B",
  "sip" : "enabled",
  "isCorpse" : 1,
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  "termination" : {"flags":0,"code":5,"namespace":"SIGNAL","indicator":"Trace\/BPT trap: 5","byProc":"exc handler","byPid":22142},
  "ktriageinfo" : "VM - Compressor failed a blocking pager_get\n",
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    "CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
    "size" : 4096,
    "uuid" : "5df621ee-554e-36a8-b448-93b2334e5480",
    "path" : "\/Applications\/ChimeraX-1.5.app\/Contents\/MacOS\/ChimeraX",
    "name" : "ChimeraX",
    "CFBundleVersion" : "1.5.0.0"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 8640278528,
    "size" : 442368,
    "uuid" : "b70ce1ec-b902-3852-8268-05de00bfa8d5",
    "path" : "\/usr\/lib\/dyld",
    "name" : "dyld"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 5208956928,
    "size" : 165052416,
    "uuid" : "4aa1de3e-464c-340c-ab61-bcd39bfc7658",
    "path" : "\/Applications\/ChimeraX-1.5.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
    "name" : "QtWebEngineCore"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703369113600,
    "size" : 49152,
    "uuid" : "bc574849-1aae-31e7-b350-916dda999d97",
    "path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
    "name" : "libsystem_pthread.dylib"
  }
],
  "sharedCache" : {
  "base" : 140703365857280,
  "size" : 15220686848,
  "uuid" : "53b6853f-0bc3-33f5-be72-1aca3a188ff8"
},
  "vmSummary" : "ReadOnly portion of Libraries: Total=1.5G resident=0K(0%) swapped_out_or_unallocated=1.5G(100%)\nWritable regions: Total=5.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=5.3G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               512K        4 \nActivity Tracing                   256K        1 \nCG backing stores                 6016K        8 \nCG image                           728K       81 \nColorSync                          240K       28 \nCoreAnimation                     5232K      113 \nCoreGraphics                        28K        6 \nCoreUI image data                 3544K       35 \nFoundation                          16K        1 \nKernel Alloc Once                    8K        1 \nMALLOC                             3.6G      370 \nMALLOC guard page                  192K        8 \nMALLOC_MEDIUM (reserved)         376.0M        5         reserved VM address space (unallocated)\nMALLOC_NANO (reserved)           384.0M        1         reserved VM address space (unallocated)\nMach message                        16K        4 \nOpenGL GLSL                        384K        4 \nRosetta Arena                     6144K        3 \nRosetta Generic                   1496K      371 \nRosetta IndirectBranch            2048K        1 \nRosetta JIT                      128.0M        1 \nRosetta Return Stack               760K       76 \nRosetta Thread Context             760K       76 \nSTACK GUARD                         52K       13 \nStack                            159.1M       32 \nStack Guard                       56.1M       19 \nVM_ALLOCATE                      229.0M      256 \nVM_ALLOCATE (reserved)           160.1M       14         reserved VM address space (unallocated)\n__CTF                               756        1 \n__DATA                            44.6M      686 \n__DATA_CONST                      30.9M      339 \n__DATA_DIRTY                      1644K      214 \n__FONT_DATA                          4K        1 \n__GLSLBUILTINS                    5176K        1 \n__LINKEDIT                       739.9M      159 \n__OBJC_RO                         82.7M        1 \n__OBJC_RW                         3200K        2 \n__TEXT                           805.0M      681 \n__UNICODE                          592K        1 \ndyld private memory               1184K        3 \nmapped file                        5.3G     1188 \nshared memory                     3040K       27 \nunshared pmap                     11.2M        9 \n===========                     =======  ======= \nTOTAL                             12.1G     4845 \nTOTAL, minus reserved VM space    11.2G     4845 \n",
  "legacyInfo" : {
  "threadTriggered" : {
    "name" : "CrBrowserMain",
    "queue" : "com.apple.main-thread"
  }
},
  "trialInfo" : {
  "rollouts" : [
    {
      "rolloutId" : "60da5e84ab0ca017dace9abf",
      "factorPackIds" : {

      },
      "deploymentId" : 240000008
    },
    {
      "rolloutId" : "607844aa04477260f58a8077",
      "factorPackIds" : {
        "SIRI_MORPHUN_ASSETS" : "6103050cbfe6dc472e1c982a"
      },
      "deploymentId" : 240000066
    }
  ],
  "experiments" : [
    {
      "treatmentId" : "c28e4ee6-1b08-4f90-8e05-2809e78310a3",
      "experimentId" : "6317d2003d24842ff850182a",
      "deploymentId" : 400000012
    }
  ]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/adamcampos/Downloads/D_9101002114_val-data_P1.cif format mmcif

No such file/path: /Users/adamcampos/Downloads/D_9101002114_val-data_P1.cif  

> open /Users/adamcampos/Documents/Utah-Postdoc/AMOT/Isoforms/Cryo-
> EM_Isoforms/AMOTp80-Cryo-02-17-23/Cryosparc-finalEM-
> Maps/J4642-FitMap/J4642-ALL.mrc format mrc

Opened J4642-ALL.mrc as #1, grid size 256,256,256, pixel 3.16, shown at level
0.636, step 1, values float32  

> set bgColor white

> surface dust #1 size 31.6

> volume #1 level 0.4952

> volume #1 level 0.4529

> volume #1 level 0.4106

> volume #1 color #d783ff

> volume #1 color #ff85ff

> volume #1 color #9437ff

> volume #1 color #d783ff

> lighting simple

> lighting soft

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting shadows true

> lighting shadows false

> lighting shadows true

> graphics silhouettes true

> toolshed show

> ui tool show "Scale Bar"

> scalebar

> scalebar 350

> scalebar 200

> scalebar 100

> open /Users/adamcampos/Downloads/emd_0192.map

Opened emd_0192.map as #3, grid size 356,356,356, pixel 1.52, shown at level
0.111, step 2, values float32  

> surface dust #1 size 31.6

> surface dust #3 size 15.2

> surface dust #1 size 31.6

> surface dust #3 size 15.2

> surface dust #1 size 31.6

> surface dust #3 size 15.2

> surface dust #1 size 31.6

> surface dust #3 size 15.2

> surface dust #1 size 31.6

> surface dust #3 size 15.2

> surface dust #1 size 31.6

> surface dust #3 size 15.2

> select #3

2 models selected  

> ui mousemode right translate

> ui mousemode right select

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models #3,1,0,0,70.319,0,1,0,6.9524,0,0,1,89.438

> view matrix models #3,1,0,0,128.55,0,1,0,93.986,0,0,1,88.606

> ui mousemode right "rotate selected models"

> view matrix models
> #3,0.46507,-0.8852,0.01171,508.28,0.88487,0.46522,0.024163,20.356,-0.026836,-0.00087551,0.99964,95.581

> view matrix models
> #3,-0.31448,-0.927,0.20437,660.13,0.47574,-0.34021,-0.81113,577.37,0.82145,-0.15785,0.548,53.689

> view matrix models
> #3,-0.2361,-0.80666,-0.54181,810.15,-0.019794,0.56145,-0.82728,448.71,0.97153,-0.18459,-0.14852,214.13

> view matrix models
> #3,-0.0701,-0.67994,-0.72991,784.54,0.44504,0.63353,-0.63291,260.47,0.89276,-0.36921,0.25819,174.98

> view matrix models
> #3,-0.42149,-0.86459,0.27357,650.01,-0.058479,-0.27513,-0.95963,731.38,0.90495,-0.42047,0.065404,239.07

> view matrix models
> #3,-0.6846,-0.72262,0.095609,723.3,-0.62978,0.52034,-0.57674,542.7,0.36701,-0.45505,-0.81131,620.8

> view matrix models
> #3,-0.81286,-0.1061,-0.57272,762.55,0.31658,0.74488,-0.58731,248.23,0.48892,-0.65871,-0.57189,583.1

> view matrix models
> #3,-0.69536,-0.098586,-0.71186,769.34,0.62511,0.40573,-0.6668,289.79,0.35456,-0.90866,-0.2205,591.29

> view matrix models
> #3,-0.94343,-0.23544,-0.23347,738.94,0.22516,0.061979,-0.97235,569.28,0.2434,-0.96991,-0.0054614,577.46

> view matrix models
> #3,-0.15422,0.21659,-0.96401,615.14,0.77095,0.63659,0.019691,1.1579,0.61794,-0.74017,-0.26515,490.67

> view matrix models
> #3,0.62136,0.66965,-0.40679,143.28,0.28725,0.28835,0.91342,-24.412,0.72897,-0.68442,-0.013188,378.74

> view matrix models
> #3,0.40832,0.45705,0.79017,-70.266,-0.75892,-0.31105,0.57209,496.88,0.50726,-0.83328,0.21986,412.13

> view matrix models
> #3,0.5408,0.38483,0.74796,-71.014,-0.29026,-0.74921,0.59535,498.93,0.78948,-0.53907,-0.29347,399.04

> view matrix models
> #3,0.4008,0.9135,-0.069868,36.791,0.34109,-0.078003,0.93679,59.714,0.85031,-0.3993,-0.34285,357.89

> view matrix models
> #3,-0.31374,0.62505,-0.71476,470.85,0.70317,0.6588,0.26746,-55.956,0.63806,-0.41868,-0.64621,498.52

> view matrix models
> #3,-0.83304,0.053083,-0.55067,716.42,0.41679,0.71476,-0.56161,225,0.36378,-0.69735,-0.61755,637.41

> view matrix models
> #3,-0.70625,0.070121,-0.70448,722.22,0.64462,0.47511,-0.59895,246.81,0.2927,-0.87713,-0.38075,641.33

> view matrix models
> #3,-0.58705,0.23066,-0.77599,666.8,0.65852,0.6936,-0.29201,97.771,0.47088,-0.68243,-0.55908,590.78

> view matrix models
> #3,-0.63294,0.16491,-0.75644,691.42,0.66468,0.61674,-0.42171,153.39,0.39698,-0.7697,-0.49997,617.64

> view matrix models
> #3,-0.54654,0.25646,-0.79719,655.26,0.69659,0.6676,-0.2628,87.768,0.46481,-0.69895,-0.54352,592.72

> view matrix models
> #3,-0.71281,0.10341,-0.69369,711.47,0.56282,0.67451,-0.47778,177.48,0.41849,-0.73099,-0.539,612.01

> ui mousemode right "translate selected models"

> view matrix models
> #3,-0.71281,0.10341,-0.69369,749.82,0.56282,0.67451,-0.47778,170.5,0.41849,-0.73099,-0.539,603.04

> select clear

> open /Users/adamcampos/Downloads/emd_14467.map

Opened emd_14467.map as #4, grid size 300,300,300, pixel 0.912, shown at level
0.0343, step 2, values float32  

> surface dust #1 size 31.6

> surface dust #4 size 9.12

> ui mousemode right "translate selected models"

> ui mousemode right select

> select #4

2 models selected  

> ui mousemode right "translate selected models"

> view matrix models #4,1,0,0,191.76,0,1,0,-79.045,0,0,1,169.04

> view matrix models #4,1,0,0,400.31,0,1,0,33.411,0,0,1,220.39

> view matrix models #4,1,0,0,411.07,0,1,0,38.649,0,0,1,217.46

> view matrix models #4,1,0,0,258.91,0,1,0,69.36,0,0,1,181.98

> view matrix models #4,1,0,0,299.48,0,1,0,242.21,0,0,1,182.16

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.93714,-0.34099,-0.074103,364.81,0.32716,0.93245,-0.15332,228.02,0.12138,0.11944,0.98539,151.33

> view matrix models
> #4,0.94624,0.3137,-0.078927,274.65,-0.3208,0.87874,-0.35341,350.73,-0.041505,0.35973,0.93213,147.85

> view matrix models
> #4,0.38648,0.92206,-0.020856,259.46,-0.9214,0.385,-0.052787,458.7,-0.040643,0.039617,0.99839,182.48

> view matrix models
> #4,0.62668,0.77861,0.032198,239.21,-0.77877,0.62424,0.061942,390.9,0.028129,-0.063893,0.99756,187.42

> view matrix models
> #4,0.78627,0.61564,-0.052525,251.44,-0.61045,0.78715,0.087992,342.19,0.095517,-0.037121,0.99474,174.99

> view matrix models
> #4,0.60085,0.79929,0.010721,242.83,-0.79722,0.60016,-0.065191,414.1,-0.058541,0.030623,0.99782,186.21

> view matrix models
> #4,0.16052,0.98448,0.070925,269.03,-0.95945,0.1725,-0.22296,516.24,-0.23173,-0.032261,0.97224,221.83

> view matrix models
> #4,-0.17971,0.98189,0.060025,317.08,-0.97861,-0.17223,-0.11249,550.9,-0.10012,-0.078957,0.99184,207.67

> ui mousemode right "translate selected models"

> ui mousemode right "rotate selected models"

> view matrix models
> #4,-0.6319,0.76734,-0.10908,430.98,-0.55047,-0.5434,-0.63379,614.9,-0.54561,-0.34045,0.76577,334.88

> view matrix models
> #4,-0.91883,0.24158,-0.31208,569.66,-0.22648,-0.97036,-0.084331,554.14,-0.3232,-0.0068061,0.94631,234.32

> view matrix models
> #4,-0.89546,0.31984,-0.30962,555.44,-0.31596,-0.94661,-0.064053,560.26,-0.31357,0.04047,0.9487,226.22

> select clear

> volume #4 step 1

> volume #3 step 1

> open /Users/adamcampos/Downloads/emd_24494.map

Opened emd_24494.map as #5, grid size 432,432,432, pixel 1.06, shown at level
0.0365, step 2, values float32  

> surface dust #1 size 31.6

> surface dust #5 size 10.6

> volume #5 step 1

> ui mousemode right select

> select #5

2 models selected  

> ui mousemode right "translate selected models"

> view matrix models #5,1,0,0,160.93,0,1,0,0.41747,0,0,1,160.36

> view matrix models #5,1,0,0,168.58,0,1,0,160.22,0,0,1,135.32

> view matrix models #5,1,0,0,180.38,0,1,0,172.54,0,0,1,137.01

> view matrix models #5,1,0,0,187.83,0,1,0,170.92,0,0,1,125.59

> select clear

> select add #1

2 models selected  

> select add #5

4 models selected  

> select add #4

6 models selected  

> select add #3

8 models selected  

> ui mousemode right select

> select clear

Drag select of 1 J4642-ALL.mrc , 3 emd_0192.map , 5 emd_24494.map  

> select clear

> ui mousemode right select

> select #1

2 models selected  

> ui mousemode right "translate selected models"

> select clear

> select add #1

2 models selected  

> view matrix models #1,1,0,0,19.547,0,1,0,127.12,0,0,1,5.4081

> select clear

> scalebar off

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/adamcampos/Desktop/movie1.mp4

Movie saved to /Users/adamcampos/Desktop/movie1.mp4  
  

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/adamcampos/Desktop/movie2.mp4


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 76.3
OpenGL renderer: Apple M1
OpenGL vendor: Apple

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Air
      Model Identifier: MacBookAir10,1
      Processor Name: Unknown
      Processor Speed: 2.4 GHz
      Number of Processors: 1
      Total Number of Cores: 8
      L2 Cache: 8 MB
      Memory: 16 GB

Software:

    System Software Overview:

      System Version: macOS 12.4 (21F79)
      Kernel Version: Darwin 21.5.0
      Time since boot: 66 days 2:26

Graphics/Displays:

    Apple M1:

      Chipset Model: Apple M1
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 8
      Vendor: Apple (0x106b)
      Metal Family: Supported, Metal GPUFamily Apple 7
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        SAMSUNG:
          Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus)
          UI Looks like: 2560 x 1440 @ 30.00Hz
          Mirror: Off
          Online: Yes


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.19.0
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.5
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.4
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.1.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.1.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.33
    psutil: 5.9.1
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.6
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.3.0
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    setuptools: 65.1.1
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    typing-extensions: 4.4.0
    urllib3: 1.26.13
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    zipp: 3.11.0

Change History (2)

comment:1 by Eric Pettersen, 3 years ago

Component: Unassigned → Input/Output
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Crash forking ffmpeg

Was using 11.2 GB

comment:2 by Tom Goddard, 3 years ago

Resolution: → nonchimerax
Status: assigned → closed

I think we have only seen these fork crashes on ARM Mac running Intel ChimeraX.

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