![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#8884 closed defect (duplicate)
Crash in garbage collection
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | UI | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000001110bb600 (most recent call first):
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 341 in _cleanup
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 381 in cb
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 283 in event_loop
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 884 in init
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1035 in
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
{"app_name":"ChimeraX","timestamp":"2023-04-21 12:56:28.00 -0500","app_version":"1.5.0","slice_uuid":"5df621ee-554e-36a8-b448-93b2334e5480","build_version":"1.5.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":1,"is_first_party":0,"bug_type":"309","os_version":"macOS 12.6.3 (21G419)","incident_id":"62EDBD60-5F8B-453D-B02C-DC820089C999","name":"ChimeraX"}
{
"uptime" : 960000,
"procLaunch" : "2023-04-21 12:54:19.8769 -0500",
"procRole" : "Foreground",
"version" : 2,
"userID" : 504,
"deployVersion" : 210,
"modelCode" : "MacBookPro14,1",
"procStartAbsTime" : 963131637750108,
"coalitionID" : 62660,
"osVersion" : {
"train" : "macOS 12.6.3",
"build" : "21G419",
"releaseType" : "User"
},
"captureTime" : "2023-04-21 12:56:27.5321 -0500",
"incident" : "62EDBD60-5F8B-453D-B02C-DC820089C999",
"bug_type" : "309",
"pid" : 22925,
"procExitAbsTime" : 963259278333391,
"cpuType" : "X86-64",
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.5.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.5.0","CFBundleVersion":"1.5.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"1A5B63D2-0E59-5DDE-8D7B-58CBEABFEBA5","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "198D3E69-69B8-45C2-38AA-29568303F3EA",
"wakeTime" : 3536,
"sleepWakeUUID" : "00B625D3-A916-4EB6-8E14-573555D437F6",
"sip" : "enabled",
"vmRegionInfo" : "0xa9 is not in any region. Bytes before following region: 140737487494999\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n VM_ALLOCATE 7ffffff2e000-7ffffff2f000 [ 4K] r-x\/r-x SM=ALI ",
"isCorpse" : 1,
"exception" : {"codes":"0x0000000000000001, 0x00000000000000a9","rawCodes":[1,169],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x00000000000000a9"},
"vmregioninfo" : "0xa9 is not in any region. Bytes before following region: 140737487494999\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n VM_ALLOCATE 7ffffff2e000-7ffffff2f000 [ 4K] r-x\/r-x SM=ALI ",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : [{"queue":"com.apple.main-thread","instructionState":{"instructionStream":{"bytes":[254,72,139,114,8,72,131,230,3,72,9,198,72,137,114,8,73,139,70,8,72,139,83,248,72,131,226,3,72,9,194,72,137,83,248,72,137,8,76,137,115,240,73,137,78,8,72,139,67,248,235,6,72,131,248,3,119,12,72,131,224,3,72,131,200,4,72,137,67,248,49,192,91,65,94,93,195,102,15,31,68,0,0,85,72,137,229,83,80,72,137,251,72,139,67,8,246,128,169,0,0,0,64,116,37,72,139,128,72,1,0,0,72,133,192,116,9,72,137,223,255,208,133,192,116,16,72,139,67,248,168,2,116,8,72,131,192,252,72,137,67,248,49,192,72,131,196,8,91,93,195,102,102,102,46,15,31,132,0,0,0,0,0,85,72,137,229,65,87,65,86,65,85,65,84,83,80,72,137,203,73,137,246,73,137,255,73,139,135,64,3,0],"offset":96}},"frames":[{"imageOffset":32782,"symbol":"__pthread_kill","symbolLocation":10,"imageIndex":0},{"imageOffset":25087,"symbol":"pthread_kill","symbolLocation":263,"imageIndex":1},{"imageOffset":279256,"symbol":"raise","symbolLocation":26,"imageIndex":2},{"imageOffset":15869,"symbol":"_sigtramp","symbolLocation":29,"imageIndex":3},{"imageOffset":0,"imageIndex":4},{"imageOffset":590480,"symbol":"tupletraverse","symbolLocation":48,"imageIndex":5},{"imageOffset":1571334,"symbol":"collect","symbolLocation":2646,"imageIndex":5},{"imageOffset":1575975,"symbol":"gc_collect","symbolLocation":231,"imageIndex":5},{"imageOffset":516285,"symbol":"cfunction_vectorcall_FASTCALL_KEYWORDS","symbolLocation":125,"imageIndex":5},{"imageOffset":1146380,"symbol":"call_function","symbolLocation":732,"imageIndex":5},{"imageOffset":1135266,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":25554,"imageIndex":5},{"imageOffset":1149699,"symbol":"_PyEval_EvalCode","symbolLocation":2611,"imageIndex":5},{"imageOffset":261297,"symbol":"_PyFunction_Vectorcall","symbolLocation":289,"imageIndex":5},{"imageOffset":1137033,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":27321,"imageIndex":5},{"imageOffset":1149699,"symbol":"_PyEval_EvalCode","symbolLocation":2611,"imageIndex":5},{"imageOffset":261297,"symbol":"_PyFunction_Vectorcall","symbolLocation":289,"imageIndex":5},{"imageOffset":1257368,"symbol":"PyQtSlot::call(_object*, _object*) const","symbolLocation":40,"imageIndex":6},{"imageOffset":1257114,"symbol":"PyQtSlot::invoke(void**, _object*, void*, bool) const","symbolLocation":362,"imageIndex":6},{"imageOffset":1261029,"symbol":"PyQtSlotProxy::unislot(void**)","symbolLocation":85,"imageIndex":6},{"imageOffset":1260890,"symbol":"PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**)","symbolLocation":58,"imageIndex":6},{"imageOffset":777575,"imageIndex":7},{"imageOffset":863063,"symbol":"QTimer::timerEvent(QTimerEvent*)","symbolLocation":199,"imageIndex":7},{"imageOffset":146281,"symbol":"sipQTimer::timerEvent(QTimerEvent*)","symbolLocation":121,"imageIndex":6},{"imageOffset":746701,"symbol":"QObject::event(QEvent*)","symbolLocation":109,"imageIndex":7},{"imageOffset":145898,"symbol":"sipQTimer::event(QEvent*)","symbolLocation":186,"imageIndex":6},{"imageOffset":51847,"symbol":"QApplicationPrivate::notify_helper(QObject*, QEvent*)","symbolLocation":247,"imageIndex":8},{"imageOffset":55875,"symbol":"QApplication::notify(QObject*, QEvent*)","symbolLocation":499,"imageIndex":8},{"imageOffset":1282534,"symbol":"sipQApplication::notify(QObject*, QEvent*)","symbolLocation":230,"imageIndex":9},{"imageOffset":449594,"symbol":"QCoreApplication::notifyInternal2(QObject*, QEvent*)","symbolLocation":170,"imageIndex":7},{"imageOffset":2061601,"symbol":"QTimerInfoList::activateTimers()","symbolLocation":961,"imageIndex":7},{"imageOffset":99493,"imageIndex":10},{"imageOffset":524667,"symbol":"__CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__","symbolLocation":17,"imageIndex":11},{"imageOffset":524515,"symbol":"__CFRunLoopDoSource0","symbolLocation":180,"imageIndex":11},{"imageOffset":523967,"symbol":"__CFRunLoopDoSources0","symbolLocation":340,"imageIndex":11},{"imageOffset":518264,"symbol":"__CFRunLoopRun","symbolLocation":892,"imageIndex":11},{"imageOffset":515644,"symbol":"CFRunLoopRunSpecific","symbolLocation":562,"imageIndex":11},{"imageOffset":189926,"symbol":"RunCurrentEventLoopInMode","symbolLocation":292,"imageIndex":12},{"imageOffset":189258,"symbol":"ReceiveNextEventCommon","symbolLocation":594,"imageIndex":12},{"imageOffset":188645,"symbol":"_BlockUntilNextEventMatchingListInModeWithFilter","symbolLocation":70,"imageIndex":12},{"imageOffset":257965,"symbol":"_DPSNextEvent","symbolLocation":927,"imageIndex":13},{"imageOffset":251498,"symbol":"-[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]","symbolLocation":1394,"imageIndex":13},{"imageOffset":195865,"symbol":"-[NSApplication run]","symbolLocation":586,"imageIndex":13},{"imageOffset":102572,"imageIndex":10},{"imageOffset":488230,"symbol":"QEventLoop::exec(QFlags)","symbolLocation":486,"imageIndex":7},{"imageOffset":451125,"symbol":"QCoreApplication::exec()","symbolLocation":133,"imageIndex":7},{"imageOffset":2252186,"symbol":"meth_QApplication_exec(_object*, _object*)","symbolLocation":90,"imageIndex":9},{"imageOffset":517917,"symbol":"cfunction_call","symbolLocation":125,"imageIndex":5},{"imageOffset":259511,"symbol":"_PyObject_MakeTpCall","symbolLocation":359,"imageIndex":5},{"imageOffset":1146524,"symbol":"call_function","symbolLocation":876,"imageIndex":5},{"imageOffset":1135266,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":25554,"imageIndex":5},{"imageOffset":261416,"symbol":"function_code_fastcall","symbolLocation":104,"imageIndex":5},{"imageOffset":269674,"symbol":"method_vectorcall","symbolLocation":202,"imageIndex":5},{"imageOffset":1146380,"symbol":"call_function","symbolLocation":732,"imageIndex":5},{"imageOffset":1135266,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":25554,"imageIndex":5},{"imageOffset":1149699,"symbol":"_PyEval_EvalCode","symbolLocation":2611,"imageIndex":5},{"imageOffset":261297,"symbol":"_PyFunction_Vectorcall","symbolLocation":289,"imageIndex":5},{"imageOffset":1146380,"symbol":"call_function","symbolLocation":732,"imageIndex":5},{"imageOffset":1135435,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":25723,"imageIndex":5},{"imageOffset":1149699,"symbol":"_PyEval_EvalCode","symbolLocation":2611,"imageIndex":5},{"imageOffset":1109419,"symbol":"PyEval_EvalCode","symbolLocation":139,"imageIndex":5},{"imageOffset":1096722,"symbol":"builtin_exec","symbolLocation":626,"imageIndex":5},{"imageOffset":516131,"symbol":"cfunction_vectorcall_FASTCALL","symbolLocation":195,"imageIndex":5},{"imageOffset":1146380,"symbol":"call_function","symbolLocation":732,"imageIndex":5},{"imageOffset":1135435,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":25723,"imageIndex":5},{"imageOffset":1149699,"symbol":"_PyEval_EvalCode","symbolLocation":2611,"imageIndex":5},{"imageOffset":261297,"symbol":"_PyFunction_Vectorcall","symbolLocation":289,"imageIndex":5},{"imageOffset":1146380,"symbol":"call_function","symbolLocation":732,"imageIndex":5},{"imageOffset":1135435,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":25723,"imageIndex":5},{"imageOffset":1149699,"symbol":"_PyEval_EvalCode","symbolLocation":2611,"imageIndex":5},{"imageOffset":261297,"symbol":"_PyFunction_Vectorcall","symbolLocation":289,"imageIndex":5},{"imageOffset":1566832,"symbol":"pymain_run_module","symbolLocation":208,"imageIndex":5},{"imageOffset":1564551,"symbol":"Py_RunMain","symbolLocation":1431,"imageIndex":5},{"imageOffset":1566095,"symbol":"pymain_main","symbolLocation":223,"imageIndex":5},{"imageOffset":1565851,"symbol":"Py_Main","symbolLocation":43,"imageIndex":5},{"imageOffset":3528,"symbol":"main","symbolLocation":120,"imageIndex":14},{"imageOffset":21806,"symbol":"start","symbolLocation":462,"imageIndex":15}],"id":7844963,"triggered":true,"threadState":{"r13":{"value":140702032006032},"rax":{"value":0},"rflags":{"value":582},"cpu":{"value":0},"r14":{"value":11},"rsi":{"value":11},"r8":{"value":140590598938440},"cr2":{"value":140590598938440},"rdx":{"value":0},"r10":{"value":4580947456,"symbolLocation":0,"symbol":"_main_thread"},"r9":{"value":11949167182349716934},"r15":{"value":22},"rbx":{"value":4580947456,"symbolLocation":0,"symbol":"_main_thread"},"trap":{"value":133},"err":{"value":33554760},"r11":{"value":582},"rip":{"value":140703296282638,"matchesCrashFrame":1},"rbp":{"value":140590598937216},"rsp":{"value":140590598937176},"r12":{"value":259},"rcx":{"value":140590598937176},"flavor":"x86_THREAD_STATE","rdi":{"value":259}},"name":"CrBrowserMain"},{"id":7844991,"frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":3445311,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7845049,"name":"ThreadPoolServiceThread","frames":[{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":66456106,"imageIndex":17},{"imageOffset":66455847,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":65958573,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7845050,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66009023,"imageIndex":17},{"imageOffset":66011756,"imageIndex":17},{"imageOffset":66010733,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7845051,"name":"ThreadPoolBackgroundWorker","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66009023,"imageIndex":17},{"imageOffset":66011756,"imageIndex":17},{"imageOffset":66010589,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7845052,"name":"Chrome_IOThread","frames":[{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":66456106,"imageIndex":17},{"imageOffset":66455847,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":48386978,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7845053,"name":"NetworkConfigWatcher","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66251759,"imageIndex":17},{"imageOffset":65421769,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7845056,"name":"CompositorTileWorker1","frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":66219291,"imageIndex":17},{"imageOffset":100616493,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7845057,"name":"Chrome_InProcGpuThread","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":11116,"symbol":"io_connect_method","symbolLocation":387,"imageIndex":18},{"imageOffset":10675,"symbol":"IOConnectCallMethod","symbolLocation":244,"imageIndex":18},{"imageOffset":14829,"symbol":"IOConnectCallStructMethod","symbolLocation":46,"imageIndex":18},{"imageOffset":7073,"symbol":"IOAccelContextSubmitDataBuffersExt2","symbolLocation":249,"imageIndex":19},{"imageOffset":10759,"symbol":"gpusSubmitDataBuffers","symbolLocation":136,"imageIndex":20},{"imageOffset":106469,"symbol":"IntelCommandBuffer::getNew(GLDContextRec*)","symbolLocation":51,"imageIndex":21},{"imageOffset":105964,"symbol":"intelSubmitCommands","symbolLocation":171,"imageIndex":21},{"imageOffset":93830575,"imageIndex":17},{"imageOffset":71659671,"imageIndex":17},{"imageOffset":71740158,"imageIndex":17},{"imageOffset":71749421,"imageIndex":17},{"imageOffset":70371663,"imageIndex":17},{"imageOffset":70456720,"imageIndex":17},{"imageOffset":70505996,"imageIndex":17},{"imageOffset":70512188,"imageIndex":17},{"imageOffset":71312430,"imageIndex":17},{"imageOffset":71294183,"imageIndex":17},{"imageOffset":10970001,"imageIndex":17},{"imageOffset":10970894,"imageIndex":17},{"imageOffset":71130241,"imageIndex":17},{"imageOffset":106715553,"imageIndex":17},{"imageOffset":106602000,"imageIndex":17},{"imageOffset":106566857,"imageIndex":17},{"imageOffset":106577356,"imageIndex":17},{"imageOffset":101422088,"imageIndex":17},{"imageOffset":107954770,"imageIndex":17},{"imageOffset":107954023,"imageIndex":17},{"imageOffset":107981788,"imageIndex":17},{"imageOffset":108022324,"imageIndex":17},{"imageOffset":101449557,"imageIndex":17},{"imageOffset":65816201,"imageIndex":17},{"imageOffset":65917583,"imageIndex":17},{"imageOffset":65916874,"imageIndex":17},{"imageOffset":65918994,"imageIndex":17},{"imageOffset":65421708,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7845058,"name":"Chrome_ChildIOThread","frames":[{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":66456106,"imageIndex":17},{"imageOffset":66455847,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7845059,"name":"NetworkConfigWatcher","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66251759,"imageIndex":17},{"imageOffset":65421769,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7845061,"name":"VizCompositorThread","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":65421672,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7845069,"name":"NetworkService","frames":[{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":66456106,"imageIndex":17},{"imageOffset":66455847,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7845070,"name":"NetworkConfigWatcher","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66251759,"imageIndex":17},{"imageOffset":65421769,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7845071,"name":"ThreadPoolSingleThreadForegroundBlocking0","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66009023,"imageIndex":17},{"imageOffset":66011756,"imageIndex":17},{"imageOffset":66010829,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7845091,"name":"NetworkConfigWatcher","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66251759,"imageIndex":17},{"imageOffset":65421769,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7845111,"name":"com.apple.NSEventThread","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":525165,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":319,"imageIndex":11},{"imageOffset":518648,"symbol":"__CFRunLoopRun","symbolLocation":1276,"imageIndex":11},{"imageOffset":515644,"symbol":"CFRunLoopRunSpecific","symbolLocation":562,"imageIndex":11},{"imageOffset":1755598,"symbol":"_NSEventThread","symbolLocation":132,"imageIndex":13},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7845130,"name":"MemoryInfra","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66251759,"imageIndex":17},{"imageOffset":65421769,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7845131,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking1","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66009023,"imageIndex":17},{"imageOffset":66011034,"imageIndex":17},{"imageOffset":66010637,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7846467,"frames":[{"imageOffset":8008,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]},{"id":7846471,"frames":[{"imageOffset":8008,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]},{"id":7846786,"frames":[{"imageOffset":8008,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]},{"id":7846787,"frames":[{"imageOffset":8008,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]},{"id":7846789,"frames":[{"imageOffset":8008,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]},{"id":7846790,"name":"ThreadPoolBackgroundWorker","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66009023,"imageIndex":17},{"imageOffset":66011034,"imageIndex":17},{"imageOffset":66010589,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":7846798,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66009023,"imageIndex":17},{"imageOffset":66011034,"imageIndex":17},{"imageOffset":66010733,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]}],
"usedImages" : [
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703296249856,
"size" : 229376,
"uuid" : "e2477724-bccf-3a8c-9c75-c774c569f36e",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703296479232,
"size" : 49152,
"uuid" : "b5454e27-e8c7-3fdb-b77f-714f1e82e70b",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703295234048,
"size" : 561152,
"uuid" : "e42e9d7a-03b4-340b-b61e-dcd45fd4acc0",
"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703296577536,
"size" : 40960,
"uuid" : "a8a33774-6d44-35e9-ad2a-bad9e4d5192a",
"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4325396480,
"CFBundleShortVersionString" : "3.9.11, (c) 2001-2021 Python Software Foundation.",
"CFBundleIdentifier" : "org.python.python",
"size" : 2527232,
"uuid" : "ef9cc1f4-5991-3213-9a9e-e68c578b6c1b",
"path" : "\/Applications\/ChimeraX-1.5.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/Python",
"name" : "Python",
"CFBundleVersion" : "3.9.11"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4419366912,
"size" : 1589248,
"uuid" : "2be8100b-aa99-3117-95ff-0200ddc4032f",
"path" : "\/Applications\/ChimeraX-1.5.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtCore.abi3.so",
"name" : "QtCore.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4411830272,
"size" : 5259264,
"uuid" : "35b47b1c-6952-3d39-a5e7-711f3ca228f2",
"path" : "\/Applications\/ChimeraX-1.5.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore",
"name" : "QtCore"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4543889408,
"size" : 4964352,
"uuid" : "f36760e5-d1e7-3a93-ae8c-1c3e55e3fc35",
"path" : "\/Applications\/ChimeraX-1.5.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets",
"name" : "QtWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4423086080,
"size" : 2801664,
"uuid" : "babd94e3-ec19-3110-ab5b-11c39432d8c5",
"path" : "\/Applications\/ChimeraX-1.5.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtWidgets.abi3.so",
"name" : "QtWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4551868416,
"size" : 655360,
"uuid" : "4bf756eb-ff87-3f7f-8c98-b1eda6463b81",
"path" : "\/Applications\/ChimeraX-1.5.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib",
"name" : "libqcocoa.dylib"
},
{
"source" : "P",
"arch" : "x86_64h",
"base" : 140703296794624,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 5255168,
"uuid" : "93c48919-68af-367e-9a67-db4159bc962c",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "1866"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703444639744,
"CFBundleShortVersionString" : "2.1.1",
"CFBundleIdentifier" : "com.apple.HIToolbox",
"size" : 3096576,
"uuid" : "06fdecd6-9f69-397b-b1e2-a8226c0ba7ed",
"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
"name" : "HIToolbox"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703341330432,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.AppKit",
"size" : 15269888,
"uuid" : "11be8778-f5e5-3ccb-bcc3-10ffea3bf44b",
"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
"CFBundleVersion" : "2113.60.148"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4316770304,
"CFBundleShortVersionString" : "1.5.0",
"CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
"size" : 4096,
"uuid" : "5df621ee-554e-36a8-b448-93b2334e5480",
"path" : "\/Applications\/ChimeraX-1.5.app\/Contents\/MacOS\/ChimeraX",
"name" : "ChimeraX",
"CFBundleVersion" : "1.5.0.0"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4580421632,
"size" : 442368,
"uuid" : "006a3e6f-3cd3-34d9-b0f2-ed6bd67a95a6",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4434255872,
"size" : 64028672,
"uuid" : "24c9d5c5-4854-3af4-9550-cb0204044dfa",
"path" : "\/Applications\/ChimeraX-1.5.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
"name" : "libopenblas64_.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4910465024,
"size" : 165052416,
"uuid" : "4aa1de3e-464c-340c-ab61-bcd39bfc7658",
"path" : "\/Applications\/ChimeraX-1.5.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
"name" : "QtWebEngineCore"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703340199936,
"CFBundleShortVersionString" : "2.0.2",
"CFBundleIdentifier" : "com.apple.framework.IOKit",
"size" : 745472,
"uuid" : "bcc679a9-324c-3d77-ad5d-d591befc73d5",
"path" : "\/System\/Library\/Frameworks\/IOKit.framework\/Versions\/A\/IOKit",
"name" : "IOKit"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703440797696,
"CFBundleShortVersionString" : "462.8",
"CFBundleIdentifier" : "com.apple.IOAccelerator",
"size" : 36864,
"uuid" : "77cf4ab6-91ca-3f90-8256-68e38cb0e479",
"path" : "\/System\/Library\/PrivateFrameworks\/IOAccelerator.framework\/Versions\/A\/IOAccelerator",
"name" : "IOAccelerator",
"CFBundleVersion" : "462.8"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140707865034752,
"size" : 45056,
"uuid" : "63875145-ff3b-3b7c-98ac-84f8ab9df5cc",
"path" : "\/System\/Library\/PrivateFrameworks\/GPUSupport.framework\/Versions\/A\/Libraries\/libGPUSupportMercury.dylib",
"name" : "libGPUSupportMercury.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140712119812096,
"CFBundleShortVersionString" : "18.8.6",
"CFBundleIdentifier" : "com.apple.driver.AppleIntelKBLGraphicsGLDriver",
"size" : 15712256,
"uuid" : "40166027-f0fe-364b-8e03-58a2a62a971e",
"path" : "\/System\/Library\/Extensions\/AppleIntelKBLGraphicsGLDriver.bundle\/Contents\/MacOS\/AppleIntelKBLGraphicsGLDriver",
"name" : "AppleIntelKBLGraphicsGLDriver",
"CFBundleVersion" : "18.0.8"
}
],
"sharedCache" : {
"base" : 140703293222912,
"size" : 19331678208,
"uuid" : "b6d97ead-9d19-3228-adaa-cca8452c02d2"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.4G resident=0K(0%) swapped_out_or_unallocated=1.4G(100%)\nWritable regions: Total=940.5M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=940.5M(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 512K 4 \nActivity Tracing 256K 1 \nCG backing stores 2160K 4 \nCG image 236K 15 \nColorSync 232K 28 \nCoreAnimation 144K 11 \nCoreGraphics 12K 2 \nCoreUI image data 2884K 21 \nFoundation 16K 1 \nKernel Alloc Once 8K 1 \nMALLOC 319.4M 519 \nMALLOC guard page 32K 8 \nMALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)\nMach message 16K 2 \nObjC additional data 15K 1 \nOpenGL GLSL 384K 4 \nSTACK GUARD 100K 25 \nStack 155.7M 26 \nStack Guard 56.0M 1 \nVM_ALLOCATE 73.0M 78 \n__CTF 756 1 \n__DATA 44.5M 660 \n__DATA_CONST 32.4M 340 \n__DATA_DIRTY 1641K 214 \n__FONT_DATA 4K 1 \n__GLSLBUILTINS 5176K 1 \n__LINKEDIT 675.1M 137 \n__TEXT 804.1M 660 \n__UNICODE 592K 1 \ndyld private memory 1184K 3 \nmapped file 186.6M 45 \nshared memory 2980K 27 \n=========== ======= ======= \nTOTAL 2.7G 2844 \nTOTAL, minus reserved VM space 2.3G 2844 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "6112e14f37f5d11121dcd519",
"factorPackIds" : {
"SIRI_TEXT_TO_SPEECH" : "634710168e8be655c1316aaa"
},
"deploymentId" : 240000231
},
{
"rolloutId" : "5fb4245a1bbfe8005e33a1e1",
"factorPackIds" : {
},
"deploymentId" : 240000021
}
],
"experiments" : [
{
"treatmentId" : "c28e4ee6-1b08-4f90-8e05-2809e78310a3",
"experimentId" : "6317d2003d24842ff850182a",
"deploymentId" : 400000013
}
]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/K_Smooth
> 1/Downloads/ChimeraX/AlphaFold/Thiopeptide_WP_093484012/best_model.pdb"
Chain information for best_model.pdb #1
---
Chain | Description
B | No description available
C | No description available
> ui mousemode right zoom
> select /B
327 atoms, 327 bonds, 45 residues, 1 model selected
> show sel atoms
> ui tool show "Show Sequence Viewer"
> sequence chain /B
Alignment identifier is 1/B
> sequence chain /C
Alignment identifier is 1/C
> select clear
> close
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/K_Smooth
> 1/Downloads/ChimeraX/AlphaFold/Thiopeptide_WP_033695905/best_model.pdb"
Chain information for best_model.pdb #1
---
Chain | Description
B | No description available
C | No description available
OpenGL version: 4.1 INTEL-18.8.6
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 640
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro14,1
Processor Name: Dual-Core Intel Core i5
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
System Firmware Version: 499.40.2.0.0
OS Loader Version: 540.120.3~22
SMC Version (system): 2.43f11
Software:
System Software Overview:
System Version: macOS 12.6.3 (21G419)
Kernel Version: Darwin 21.6.0
Time since boot: 77 days 11:39
Graphics/Displays:
Intel Iris Plus Graphics 640:
Chipset Model: Intel Iris Plus Graphics 640
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x5926
Revision ID: 0x0006
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.1.0
Babel: 2.11.0
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.4
ChimeraX-AddH: 2.2.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.6
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.41.5
ChimeraX-AtomicLibrary: 8.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.4
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.5
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.1
ChimeraX-PDB: 2.6.8
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.7.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.24.3
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.4
decorator: 5.1.1
docutils: 0.19
entrypoints: 0.4
executing: 1.2.0
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.7.31
imagesize: 1.4.1
importlib-metadata: 5.1.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 5.1.0
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.4
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
platformdirs: 2.5.4
prompt-toolkit: 3.0.33
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.6
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
setuptools: 65.1.1
setuptools-scm: 7.0.5
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
typing-extensions: 4.4.0
urllib3: 1.26.13
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.11.0
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → UI |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in garbage collection |
comment:2 by , 3 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
Note:
See TracTickets
for help on using tickets.
Duplicate of #8673