Struct Measure: wrapped C/C++ object of type QLabel has been deleted

[jitued@…]

The following bug report has been submitted:
Platform:        macOS-13.3-arm64-arm-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open
> /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/FIG_2/FIG_2A/Fig_1A.cxs

Log from Thu Mar 30 13:19:33 2023UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/06_TTPDynamics/01_gp13_18mer_S_.pdb

Chain information for 01_gp13_18mer_S_.pdb #1  
---  
Chain | Description  
A B C D E F G H I J K L M N O P Q R | No description available  
  

> open
> /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/06_TTPDynamics/02_gp13_18mer_B_Ring2.pdb

Chain information for 02_gp13_18mer_B_Ring2.pdb #2  
---  
Chain | Description  
A B C D E F G H I J K L M N O P Q R | No description available  
  

> hide #2 models

> show #2 models

> hide #1 models

> hide #2 models

> show #1 models

> show #2 models

> set bgColor white

> hide atoms

> show cartoons

> transparency 80

> select /216-300

Nothing selected  

> select :216-300

20304 atoms, 20520 bonds, 3060 residues, 2 models selected  

> hide sel cartoons

> transparency 50

> graphics silhouettes true

> lighting flat

> hide #2 models

> select add #2

50904 atoms, 51912 bonds, 6930 residues, 2 models selected  

> select subtract #2

10152 atoms, 10260 bonds, 1530 residues, 1 model selected  

> select add #1

40752 atoms, 41652 bonds, 5400 residues, 1 model selected  

> select subtract #1

Nothing selected  

> show #2 models

> hide #1 models

> view orient

[Repeated 1 time(s)]

> turn x 90

> turn y 30

> turn y 5

[Repeated 2 time(s)]

> camera ortho

> view

> show #1 models

> view

> select /A-F

27168 atoms, 27768 bonds, 3600 residues, 2 models selected  

> color sel orange

> select /G-L

27168 atoms, 27768 bonds, 3600 residues, 2 models selected  

> color sel cornflower blue

> select /M-R

27168 atoms, 27768 bonds, 3600 residues, 2 models selected  

> color sel hot pink

> select clear

> select #1/G-L :1-215

10200 atoms, 10458 bonds, 1290 residues, 1 model selected  

> ui tool show Axes/Planes/Centroids

> define centroid sel color #ff2600

Centroid 'centroid' placed at [203.71198461 203.71233971 214.22003598]  

> select #2/G-L :1-215

10200 atoms, 10458 bonds, 1290 residues, 1 model selected  

> define centroid sel color #ff2600

Centroid 'centroid' placed at [203.65376392 203.79964902 214.1023651 ]  

> select #1/G-L :1-215

10200 atoms, 10458 bonds, 1290 residues, 1 model selected  

> define plane sel

Plane 'plane' placed at [203.71198461 203.71233971 214.22003598] with normal
[-2.47340738e-06 -9.16651633e-06 1.00000000e+00] and radius 56.8  

> select #2/G-L :1-215

10200 atoms, 10458 bonds, 1290 residues, 1 model selected  

> define plane sel

Plane 'plane' placed at [203.65376392 203.79964902 214.1023651 ] with normal [
0.00599237 -0.00357784 0.99997564] and radius 57.3  

> close #1.2

> close #2.2

> select #1/G-L :1-215

10200 atoms, 10458 bonds, 1290 residues, 1 model selected  

> define plane sel radius 50

Plane 'plane' placed at [203.71198461 203.71233971 214.22003598] with normal
[-2.47340738e-06 -9.16651633e-06 1.00000000e+00] and radius 50.0  

> select #2/G-L :1-215

10200 atoms, 10458 bonds, 1290 residues, 1 model selected  

> define plane sel radius 50

Plane 'plane' placed at [203.65376392 203.79964902 214.1023651 ] with normal [
0.00599237 -0.00357784 0.99997564] and radius 50.0  

> define plane sel radius 50

Plane 'plane' placed at [203.65376392 203.79964902 214.1023651 ] with normal [
0.00599237 -0.00357784 0.99997564] and radius 50.0  

> select #1/A-F :1-215

10200 atoms, 10458 bonds, 1290 residues, 1 model selected  

> define centroid sel color #ff2600

Centroid 'centroid' placed at [203.71091578 203.71159255 172.37838559]  

> define plane sel radius 50

Plane 'plane' placed at [203.71091578 203.71159255 172.37838559] with normal
[-4.15108176e-05 -1.19584949e-05 9.99999999e-01] and radius 50.0  

> select #2/A-F :1-215

10200 atoms, 10458 bonds, 1290 residues, 1 model selected  

> define centroid sel color #ff2600

Centroid 'centroid' placed at [205.66875735 204.11498765 174.490245 ]  

> define plane sel radius 50

Plane 'plane' placed at [205.66875735 204.11498765 174.490245 ] with normal [
0.05423049 0.06121942 -0.99665001] and radius 50.0  

> select #1/M-R :1-215

10200 atoms, 10458 bonds, 1290 residues, 1 model selected  

> define centroid sel color #ff2600

Centroid 'centroid' placed at [203.71290892 203.71228137 256.02223118]  

> define plane sel radius 50

Plane 'plane' placed at [203.71290892 203.71228137 256.02223118] with normal
[-8.07490375e-05 -1.33492315e-04 9.99999988e-01] and radius 50.0  

> select #2/M-R :1-215

10200 atoms, 10458 bonds, 1290 residues, 1 model selected  

> define centroid sel color #ff2600

Centroid 'centroid' placed at [204.65863137 205.43511206 253.74733637]  

> define plane sel radius 50

Plane 'plane' placed at [204.65863137 205.43511206 253.74733637] with normal
[-0.07991395 -0.02779271 -0.99641423] and radius 50.0  

> transparency 50

> transparency 80

> select :105@Ca

36 atoms, 36 residues, 2 models selected  

> show sel atoms

> style sel sphere

Changed 36 atom styles  

> select clear

> show cartoons

> hide cartoons

> view orient

> color #1.4 #ebebeb

> color #1.6 #ebebeb

> color #2.2 #ebebeb

> color #2.3 #ebebeb

> color #2.5 #ebebeb

> color #2.7 #ebebeb

> color #1.2 #ebebeb

> save
> /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/06_TTPDynamics/TTP_dynamics_R2.cxs

> transparency 80

> transparency 90

> graphics silhouettes false

> graphics silhouettes true

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting shadows true

> lighting shadows false

> show cartoons

> view orient

> turn x 90

> turn y 30

> save
> /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/06_TTPDynamics/TTP_dynamics_R2.cxs

> lighting flat

[Repeated 1 time(s)]

> lighting full

> lighting soft

> lighting shadows true intensity 0.5

> lighting simple

> lighting flat

> lighting soft

> lighting full

> lighting shadows false

> lighting simple

> lighting soft

[Repeated 2 time(s)]

> hide cartoons

> color bychain

> chain A

Unknown command: chain A  

> select /A

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> ui tool show "Color Actions"

> select /M

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel cyan

> select /N

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel orchid

> select /G

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> select /G

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> select /G

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel lime

> select /H

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel tomato

> select /I

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel dodger blue

> select /J

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel hot pink

> select /K

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel cyan

> select /L

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel orchid

> show sel cartoons

> select clear

> show cartoons

> select /J

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel orange

> color sel dark orange

> select clear

> lighting flat

> select /A

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel chocolate

> color sel saddle brown

> color sel crimson

> color sel maroon

> color sel dark red

> color sel crimson

> select /O

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel gold

> color sel orange

> color sel coral

> select /A

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel chocolate

> color sel goldenrod

> color sel sandy brown

> color sel chocolate

> color sel saddle brown

> color sel fire brick

> color sel tomato

> color sel dark salmon

> color sel salmon

> color sel coral

> color sel tomato

> select /H

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel coral

> select /O

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel dark salmon

> select /B

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel royal blue

> select /P

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel cornflower blue

> select /C

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel dark orange

> color sel orange red

> select /Q

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel gold

> select /D

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel deep sky blue

> select /R

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel light cyan

> color sel sky blue

> color sel light sky blue

> color sel light blue

> color sel pale turquoise

> color sel powder blue

> color sel light cyan

> color sel sky blue

> select /E

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel hot pink

> color sel deep pink

> select /F

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel forest green

> color sel green

> color sel chartreuse

> color sel green

> color sel forest green

> color sel medium sea green

> color sel sea green

> color sel forest green

> select /N

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> ui tool show "Color Actions"

> color sel green yellow

> select /M

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel light pink

> color sel pink

> color sel light pink

> color sel hot pink

> color sel light pink

> color sel pink

> color sel light pink

> ui tool show "Color Actions"

> color sel violet

> select /E

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> ui tool show "Color Actions"

> color sel magenta

> color sel hot pink

[Repeated 1 time(s)]

> color sel medium violet red

> color sel dark magenta

> color sel dark orchid

> color sel medium violet red

> color sel medium orchid

> color sel magenta

> select /M

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel plum

> color sel violet

> color sel light pink

> select /E

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel hot pink

> color sel orchid

> color sel medium orchid

> select /M

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel pale violet red

> color sel orchid

> color sel hot pink

> color sel blue violet

> color sel orchid

> color sel hot pink

> select /L

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel medium orchid

> select /M

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel violet

> select /E

4528 atoms, 4628 bonds, 600 residues, 2 models selected  

> color sel blue violet

> select clear

> view orient

[Repeated 1 time(s)]

> turn x 90

[Repeated 4 time(s)]

> hide cartoons

> hide #!2 models

> ui mousemode right distance

> distance #!1/E:105@CA #!1/L:105@CA

Distance between 01_gp13_18mer_S_.pdb #!1/E LEU 105 CA and /L LEU 105 CA:
59.885Å  

> distance #!1/M:105@CA #!1/L:105@CA

Distance between 01_gp13_18mer_S_.pdb #!1/M LEU 105 CA and /L LEU 105 CA:
59.906Å  

> distance #!1/F:105@CA #!1/G:105@CA

Distance between 01_gp13_18mer_S_.pdb #!1/F LEU 105 CA and /G LEU 105 CA:
59.893Å  

> distance #!1/G:105@CA #!1/N:105@CA

Distance between 01_gp13_18mer_S_.pdb #!1/G LEU 105 CA and /N LEU 105 CA:
59.898Å  

> distance #!1/A:105@CA #!1/H:105@CA

Distance between 01_gp13_18mer_S_.pdb #!1/A LEU 105 CA and /H LEU 105 CA:
59.902Å  

> distance #!1/H:105@CA #!1/O:105@CA

Distance between 01_gp13_18mer_S_.pdb #!1/H LEU 105 CA and /O LEU 105 CA:
59.898Å  

> distance #!1/B:105@CA #!1/I:105@CA

Distance between 01_gp13_18mer_S_.pdb #!1/B LEU 105 CA and /I LEU 105 CA:
59.885Å  

> distance #!1/I:105@CA #!1/P:105@CA

Distance between 01_gp13_18mer_S_.pdb #!1/I LEU 105 CA and /P LEU 105 CA:
59.907Å  

> distance #!1/C:105@CA #!1/J:105@CA

Distance between 01_gp13_18mer_S_.pdb #!1/C LEU 105 CA and /J LEU 105 CA:
59.892Å  

> distance #!1/J:105@CA #!1/Q:105@CA

Distance between 01_gp13_18mer_S_.pdb #!1/J LEU 105 CA and /Q LEU 105 CA:
59.898Å  

> distance #!1/D:105@CA #!1/K:105@CA

Distance between 01_gp13_18mer_S_.pdb #!1/D LEU 105 CA and /K LEU 105 CA:
59.901Å  

> distance #!1/K:105@CA #!1/R:105@CA

Distance between 01_gp13_18mer_S_.pdb #!1/K LEU 105 CA and /R LEU 105 CA:
59.899Å  

> show #!2 models

> hide #!1 models

> distance #!2/D:105@CA #!2/K:105@CA

Distance between 02_gp13_18mer_B_Ring2.pdb #!2/D LEU 105 CA and /K LEU 105 CA:
59.498Å  

> distance #!2/K:105@CA #!2/R:105@CA

Distance between 02_gp13_18mer_B_Ring2.pdb #!2/K LEU 105 CA and /R LEU 105 CA:
60.369Å  

> distance #!2/E:105@CA #!2/L:105@CA

Distance between 02_gp13_18mer_B_Ring2.pdb #!2/E LEU 105 CA and /L LEU 105 CA:
59.915Å  

> distance #!2/L:105@CA #!2/M:105@CA

Distance between 02_gp13_18mer_B_Ring2.pdb #!2/L LEU 105 CA and /M LEU 105 CA:
60.189Å  

> distance #!2/F:105@CA #!2/G:105@CA

Distance between 02_gp13_18mer_B_Ring2.pdb #!2/F LEU 105 CA and /G LEU 105 CA:
60.258Å  

> distance #!2/G:105@CA #!2/N:105@CA

Distance between 02_gp13_18mer_B_Ring2.pdb #!2/G LEU 105 CA and /N LEU 105 CA:
59.811Å  

> distance #!2/A:105@CA #!2/H:105@CA

Distance between 02_gp13_18mer_B_Ring2.pdb #!2/A LEU 105 CA and /H LEU 105 CA:
60.207Å  

> distance #!2/H:105@CA #!2/O:105@CA

Distance between 02_gp13_18mer_B_Ring2.pdb #!2/H LEU 105 CA and /O LEU 105 CA:
59.683Å  

> distance #!2/B:105@CA #!2/I:105@CA

Distance between 02_gp13_18mer_B_Ring2.pdb #!2/B LEU 105 CA and /I LEU 105 CA:
59.951Å  

> distance #!2/I:105@CA #!2/P:105@CA

Distance between 02_gp13_18mer_B_Ring2.pdb #!2/I LEU 105 CA and /P LEU 105 CA:
59.322Å  

> distance #!2/J:105@CA #!2/C:105@CA

Distance between 02_gp13_18mer_B_Ring2.pdb #!2/J LEU 105 CA and /C LEU 105 CA:
59.467Å  

> distance #!2/J:105@CA #!2/Q:105@CA

Distance between 02_gp13_18mer_B_Ring2.pdb #!2/J LEU 105 CA and /Q LEU 105 CA:
59.674Å  

> show #!1 models

> label height 2

> distance style decimalPlaces 1

[Repeated 2 time(s)]

> hide #!2 models

> transparency #1.2,4,6 0

> view orient

> transparency #1.2,4,6 50

> view

> show #!2 models

> view orient

> hide #!2 models

> hide #!1 models

> show #!1 models

> show #!2 models

> save
> /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/06_TTPDynamics/TTP_dynamics_R2.cxs

> turn x 90

> turn y 35

> turn y -35

> turn y 40

> turn y -40

> turn y 30

> hide #!2 models

> save
> /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/06_TTPDynamics/TTP_dynamics_R2.cxs

> distance style symbol false

[Repeated 2 time(s)]

> distance style symbol true

[Repeated 2 time(s)]

> hide #3.1 models

> show #3.1 models

> hide #3.1 models

> color #1.5 #ff2600

> color #1.5 #ff9300

> color #1.5 #941100

> color #2.1 #941100

> color #2.4 #941100

> color #2.1 #945200

> color #2.1 #a9a9a9

> color #1.1 #941100

> color #1.1 #929292

> color #1.1 #919191

> color #1.1 #5e5e5e

> color #1.3 #5e5e5e

> color #1.5 #5e5e5e

> show #!2 models

> hide #!1 models

> color #2.1 #ff2600

> color #2.1 #ff7e79

> color #2.1 #ebebeb

> color #2.1 #d6d6d6

> color #2.4 #d6d6d6

> color #2.6 #d6d6d6

> distance style symbol false

[Repeated 2 time(s)]

> distance style symbol true

[Repeated 2 time(s)]

> show #!1 models

> show #3.1 models

> hide #!1 models

> show #!1 models

> hide #!2 models

> save
> /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/06_TTPDynamics/TTP_dynamics_R2.cxs

——— End of log from Thu Mar 30 13:19:33 2023 ———

opened ChimeraX session  

> open
> /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/02_tail_tube_B/02_gp13-18mer_B_real_space_refined_VV_G2y.pdb
> /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/02_tail_tube_B/cryosparc_P1_J506_008_volume_map_sharp.mrc
> /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/02_tail_tube_B/cryosparc_P1_J507_map_locres.mrc

Chain information for 02_gp13-18mer_B_real_space_refined_VV_G2y.pdb #4  
---  
Chain | Description  
A B C D E F G H I J K L M N O P Q R | No description available  
  
Opened cryosparc_P1_J506_008_volume_map_sharp.mrc as #5, grid size
384,384,384, pixel 1.06, shown at level 0.296, step 2, values float32  
Opened cryosparc_P1_J507_map_locres.mrc as #6, grid size 384,384,384, pixel
1.06, shown at level 8.51, step 2, values float32  

> open
> /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/01_tail_tube_S/01_gp13-18mer_S_real_space_refined_VV_G2.pdb
> /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/01_tail_tube_S/cryosparc_P1_J210_008_volume_map_sharp_2_18A.mrc
> /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/01_tail_tube_S/cryosparc_P1_J211_map_locres.mrc

Chain information for 01_gp13-18mer_S_real_space_refined_VV_G2.pdb #7  
---  
Chain | Description  
A B C D E F G H I J K L M N O P Q R | No description available  
  
Opened cryosparc_P1_J210_008_volume_map_sharp_2_18A.mrc as #8, grid size
768,768,768, pixel 0.531, shown at step 1, values float32  
Opened cryosparc_P1_J211_map_locres.mrc as #9, grid size 768,768,768, pixel
0.531, shown at step 1, values float32  

> close #7

> close #4

> view

> hide #!9 models

> hide #!6 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> show #!8 models

> hide #!5 models

> show #!5 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> show #!8 models

> hide #!5 models

> select add #8

2 models selected  

> select add #8

2 models selected  

> color #8 #797979ff models

> view

[Repeated 1 time(s)]

> hide #!8 models

> select add #8

2 models selected  

> show #!8 models

> close #8

> close #9

> show #!5 models

> show #!6 models

> hide #!6 models

> show #!2 models

> close #1

> volume #5 level 0.2

> hide #!2 models

> ui tool show Axes/Planes/Centroids

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/struct_measure/tool.py", line 626, in clear_status  
if s.apc_status_label.text() == s.apc_status_tip:  
RuntimeError: wrapped C/C++ object of type QLabel has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLabel has been deleted  
  
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/struct_measure/tool.py", line 626, in clear_status  
if s.apc_status_label.text() == s.apc_status_tip:  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro18,3
      Model Number: MKGT3CT/A
      Chip: Apple M1 Pro
      Total Number of Cores: 10 (8 performance and 2 efficiency)
      Memory: 16 GB
      System Firmware Version: 8422.100.650
      OS Loader Version: 8422.100.650

Software:

    System Software Overview:

      System Version: macOS 13.3 (22E252)
      Kernel Version: Darwin 22.4.0
      Time since boot: 4 hours, 57 minutes

Graphics/Displays:

    Apple M1 Pro:

      Chipset Model: Apple M1 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 16
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3024 x 1964 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    biopython: 1.81
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-ArtiaX: 0.3
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.19.0
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-Cytoscape: 0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.5
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBImages: 1.1
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PhenixUI: 1.1.9
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-StrudelScore: 0.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.4
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    geomdl: 5.3.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.1.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.1.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    MolecularDynamicsViewer: 1.4
    mrcfile: 1.4.3
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    pandas: 1.5.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.33
    psutil: 5.9.1
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.6
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.3.0
    RandomWords: 0.4.0
    recordtype: 1.4
    requests: 2.28.1
    scipy: 1.9.0
    setuptools: 65.1.1
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    starfile: 0.4.11
    superqt: 0.4.1
    tables: 3.7.0
    threed-strudel: 0.9.18
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    typing-extensions: 4.4.0
    urllib3: 1.26.13
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    zipp: 3.11.0

[Eric Pettersen]

Hi Jitendra,

Thanks for reporting this problem. It has been fixed so if you install the ChimeraX daily build or 1.6 release candidate then it won't happen to you anymore.

--Eric

Eric Pettersen
UCSF Computer Graphics Lab