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Opened 3 years ago
Closed 3 years ago
#8871 closed defect (duplicate)
Crash in removeDockWidget
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.dev202210270020 (2022-10-27 00:20:39 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000001131d0e00 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 2294 in destroy
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 2158 in _destroy
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 773 in remove_tool
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 336 in remove_tool
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/tools.py", line 154 in delete
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 640 in close_request
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 2260 in
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 284 in event_loop
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 888 in init
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1039 in
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [54269]
Path: /Applications/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.6.0 (1.6.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [54269]
User ID: 501
Date/Time: 2023-04-19 09:26:43.752 -0400
OS Version: macOS 11.6.8 (20G730)
Report Version: 12
Bridge OS Version: 6.6 (19P6064)
Anonymous UUID: E1DA3055-AA4C-D243-9019-67AAC8A73A2A
Sleep/Wake UUID: EBD95AA2-F8BF-4D2A-9C99-5DBBB892B32D
Time Awake Since Boot: 2100000 seconds
Time Since Wake: 85 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x00000b777bbb4828
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0xb777bbb4828:
VM_ALLOCATE 14d3cc000-14d4cc000 [ 1024K] r--/r-- SM=PRV
-->
MALLOC_NANO 600000000000-600008000000 [128.0M] rw-/rwx SM=PRV
Application Specific Information:
Calling windowShouldClose: on the delegate for the QNSWindow 0x7feb240e5550
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff2046d91e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff2049c5bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff20380bd5 raise + 26
3 libsystem_platform.dylib 0x00007fff204e1d7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 QtWidgets 0x0000000119e6800e QMainWindow::removeDockWidget(QDockWidget*) + 30
6 QtWidgets.abi3.so 0x000000011986978f meth_QMainWindow_removeDockWidget(_object*, _object*) + 95
7 org.python.python 0x000000010552d71d cfunction_call + 125
8 org.python.python 0x00000001054ee5b7 _PyObject_MakeTpCall + 359
9 org.python.python 0x00000001055c6e9c call_function + 876
10 org.python.python 0x00000001055c42a2 _PyEval_EvalFrameDefault + 25554
11 org.python.python 0x00000001054eed28 function_code_fastcall + 104
12 org.python.python 0x00000001055c6e0c call_function + 732
13 org.python.python 0x00000001055c427e _PyEval_EvalFrameDefault + 25518
14 org.python.python 0x00000001054eed28 function_code_fastcall + 104
15 org.python.python 0x00000001055c6e0c call_function + 732
16 org.python.python 0x00000001055c427e _PyEval_EvalFrameDefault + 25518
17 org.python.python 0x00000001054eed28 function_code_fastcall + 104
18 org.python.python 0x00000001054f0d6a method_vectorcall + 202
19 org.python.python 0x00000001055c6e0c call_function + 732
20 org.python.python 0x00000001055c42a2 _PyEval_EvalFrameDefault + 25554
21 org.python.python 0x00000001054eed28 function_code_fastcall + 104
22 org.python.python 0x00000001054f0d6a method_vectorcall + 202
23 org.python.python 0x00000001055c6e0c call_function + 732
24 org.python.python 0x00000001055c42a2 _PyEval_EvalFrameDefault + 25554
25 org.python.python 0x00000001054eed28 function_code_fastcall + 104
26 org.python.python 0x00000001055c6e0c call_function + 732
27 org.python.python 0x00000001055c427e _PyEval_EvalFrameDefault + 25518
28 org.python.python 0x00000001055c7b03 _PyEval_EvalCode + 2611
29 org.python.python 0x00000001054eecb1 _PyFunction_Vectorcall + 289
30 org.python.python 0x00000001054f0d6a method_vectorcall + 202
31 org.python.python 0x00000001055c6e0c call_function + 732
32 org.python.python 0x00000001055c42a2 _PyEval_EvalFrameDefault + 25554
33 org.python.python 0x00000001055c7b03 _PyEval_EvalCode + 2611
34 org.python.python 0x00000001054eecb1 _PyFunction_Vectorcall + 289
35 sip.cpython-39-darwin.so 0x0000000112dc2397 sip_api_call_procedure_method + 199
36 QtWidgets.abi3.so 0x00000001197b90e8 sipQDockWidget::closeEvent(QCloseEvent*) + 104
37 QtWidgets 0x0000000119d2631a QWidget::event(QEvent*) + 1226
38 QtWidgets 0x0000000119e3fdf7 QDockWidget::event(QEvent*) + 775
39 QtWidgets.abi3.so 0x00000001197b80df sipQDockWidget::event(QEvent*) + 191
40 QtWidgets 0x0000000119cd3a87 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
41 QtWidgets 0x0000000119cd4a43 QApplication::notify(QObject*, QEvent*) + 499
42 QtWidgets.abi3.so 0x00000001197f01e6 sipQApplication::notify(QObject*, QEvent*) + 230
43 QtCore 0x000000011727ec3a QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
44 QtWidgets 0x0000000119d25c7e QWidgetPrivate::handleClose(QWidgetPrivate::CloseMode) + 126
45 QtWidgets 0x0000000119d3f420 0x119cc7000 + 492576
46 QtGui 0x000000011a3b42c6 QWindow::event(QEvent*) + 534
47 QtWidgets 0x0000000119cd3a87 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
48 QtWidgets 0x0000000119cd4a43 QApplication::notify(QObject*, QEvent*) + 499
49 QtWidgets.abi3.so 0x00000001197f01e6 sipQApplication::notify(QObject*, QEvent*) + 230
50 QtCore 0x000000011727ec3a QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
51 QtGui 0x000000011a36291b QGuiApplicationPrivate::processWindowSystemEvent(QWindowSystemInterfacePrivate::WindowSystemEvent*) + 2123
52 QtGui 0x000000011a3c025e 0x11a2df000 + 922206
53 libqcocoa.dylib 0x00000001267a765a 0x12675b000 + 312922
54 libqcocoa.dylib 0x00000001267d3b75 0x12675b000 + 494453
55 com.apple.AppKit 0x00007fff2312d119 __19-[NSWindow __close]_block_invoke + 153
56 com.apple.AppKit 0x00007fff2312d073 -[NSWindow __close] + 284
57 com.apple.AppKit 0x00007fff22fbcc0b -[NSApplication(NSResponder) sendAction:to:from:] + 288
58 com.apple.AppKit 0x00007fff22fbcaaf -[NSControl sendAction:to:] + 86
59 com.apple.AppKit 0x00007fff22fbc9e1 __26-[NSCell _sendActionFrom:]_block_invoke + 131
60 com.apple.AppKit 0x00007fff22fbc8e8 -[NSCell _sendActionFrom:] + 171
61 com.apple.AppKit 0x00007fff22fbc82e -[NSButtonCell _sendActionFrom:] + 96
62 com.apple.AppKit 0x00007fff22fb9917 NSControlTrackMouse + 1820
63 com.apple.AppKit 0x00007fff22fb91d3 -[NSCell trackMouse:inRect:ofView:untilMouseUp:] + 130
64 com.apple.AppKit 0x00007fff22fb909a -[NSButtonCell trackMouse:inRect:ofView:untilMouseUp:] + 697
65 com.apple.AppKit 0x00007fff22fb83c2 -[NSControl mouseDown:] + 722
66 com.apple.AppKit 0x00007fff22fb67ae -[NSWindow(NSEventRouting) _handleMouseDownEvent:isDelayedEvent:] + 4961
67 com.apple.AppKit 0x00007fff22f25fc8 -[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:] + 2594
68 com.apple.AppKit 0x00007fff22f25386 -[NSWindow(NSEventRouting) sendEvent:] + 347
69 libqcocoa.dylib 0x00000001267d1b4f 0x12675b000 + 486223
70 com.apple.AppKit 0x00007fff22f23794 -[NSApplication(NSEvent) sendEvent:] + 352
71 libqcocoa.dylib 0x000000012676640a 0x12675b000 + 46090
72 com.apple.AppKit 0x00007fff231fc531 -[NSApplication _handleEvent:] + 65
73 com.apple.AppKit 0x00007fff22d8c62e -[NSApplication run] + 623
74 libqcocoa.dylib 0x00000001267740ac 0x12675b000 + 102572
75 QtCore 0x0000000117288326 QEventLoop::exec(QFlags) + 486
76 QtCore 0x000000011727f235 QCoreApplication::exec() + 133
77 QtWidgets.abi3.so 0x00000001198dcd9a meth_QApplication_exec(_object*, _object*) + 90
78 org.python.python 0x000000010552d71d cfunction_call + 125
79 org.python.python 0x00000001054ee5b7 _PyObject_MakeTpCall + 359
80 org.python.python 0x00000001055c6e9c call_function + 876
81 org.python.python 0x00000001055c42a2 _PyEval_EvalFrameDefault + 25554
82 org.python.python 0x00000001054eed28 function_code_fastcall + 104
83 org.python.python 0x00000001054f0d6a method_vectorcall + 202
84 org.python.python 0x00000001055c6e0c call_function + 732
85 org.python.python 0x00000001055c42a2 _PyEval_EvalFrameDefault + 25554
86 org.python.python 0x00000001055c7b03 _PyEval_EvalCode + 2611
87 org.python.python 0x00000001054eecb1 _PyFunction_Vectorcall + 289
88 org.python.python 0x00000001055c6e0c call_function + 732
89 org.python.python 0x00000001055c434b _PyEval_EvalFrameDefault + 25723
90 org.python.python 0x00000001055c7b03 _PyEval_EvalCode + 2611
91 org.python.python 0x00000001055bddab PyEval_EvalCode + 139
92 org.python.python 0x00000001055bac12 builtin_exec + 626
93 org.python.python 0x000000010552d023 cfunction_vectorcall_FASTCALL + 195
94 org.python.python 0x00000001055c6e0c call_function + 732
95 org.python.python 0x00000001055c434b _PyEval_EvalFrameDefault + 25723
96 org.python.python 0x00000001055c7b03 _PyEval_EvalCode + 2611
97 org.python.python 0x00000001054eecb1 _PyFunction_Vectorcall + 289
98 org.python.python 0x00000001055c6e0c call_function + 732
99 org.python.python 0x00000001055c434b _PyEval_EvalFrameDefault + 25723
100 org.python.python 0x00000001055c7b03 _PyEval_EvalCode + 2611
101 org.python.python 0x00000001054eecb1 _PyFunction_Vectorcall + 289
102 org.python.python 0x000000010562d870 pymain_run_module + 208
103 org.python.python 0x000000010562cf87 Py_RunMain + 1431
104 org.python.python 0x000000010562d58f pymain_main + 223
105 org.python.python 0x000000010562d49b Py_Main + 43
106 edu.ucsf.cgl.ChimeraX 0x00000001054a2dc8 main + 120
107 libdyld.dylib 0x00007fff204b7f3d start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff20469cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2049ce49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010632a23f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff20469cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2049ce49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010632a23f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff20469cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2049ce49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010632a23f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 4:
0 libsystem_kernel.dylib 0x00007fff20469cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2049ce49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010632a23f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 5:
0 libsystem_kernel.dylib 0x00007fff20469cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2049ce49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010632a23f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 6:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff204701c2 kevent64 + 10
1 QtWebEngineCore 0x000000011ed53a2a 0x11adf3000 + 66456106
2 QtWebEngineCore 0x000000011ed53927 0x11adf3000 + 66455847
3 QtWebEngineCore 0x000000011ecd0a5c 0x11adf3000 + 65919580
4 QtWebEngineCore 0x000000011ec88998 0x11adf3000 + 65624472
5 QtWebEngineCore 0x000000011ecf2eb8 0x11adf3000 + 66059960
6 QtWebEngineCore 0x000000011ecda2ad 0x11adf3000 + 65958573
7 QtWebEngineCore 0x000000011ecf304a 0x11adf3000 + 66060362
8 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
9 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 7:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff204672aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2046761c mach_msg + 60
2 QtWebEngineCore 0x000000011ed21e26 0x11adf3000 + 66252326
3 QtWebEngineCore 0x000000011ece67bf 0x11adf3000 + 66009023
4 QtWebEngineCore 0x000000011ece726c 0x11adf3000 + 66011756
5 QtWebEngineCore 0x000000011ece6ddd 0x11adf3000 + 66010589
6 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
7 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 8:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff204701c2 kevent64 + 10
1 QtWebEngineCore 0x000000011ed53a2a 0x11adf3000 + 66456106
2 QtWebEngineCore 0x000000011ed53927 0x11adf3000 + 66455847
3 QtWebEngineCore 0x000000011ecd0a5c 0x11adf3000 + 65919580
4 QtWebEngineCore 0x000000011ec88998 0x11adf3000 + 65624472
5 QtWebEngineCore 0x000000011ecf2eb8 0x11adf3000 + 66059960
6 QtWebEngineCore 0x000000011dc183a2 0x11adf3000 + 48386978
7 QtWebEngineCore 0x000000011ecf304a 0x11adf3000 + 66060362
8 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
9 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 9:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204672aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2046761c mach_msg + 60
2 QtWebEngineCore 0x000000011ed21e26 0x11adf3000 + 66252326
3 QtWebEngineCore 0x000000011ed21bef 0x11adf3000 + 66251759
4 QtWebEngineCore 0x000000011ec571c9 0x11adf3000 + 65421769
5 QtWebEngineCore 0x000000011ecd0a5c 0x11adf3000 + 65919580
6 QtWebEngineCore 0x000000011ec88998 0x11adf3000 + 65624472
7 QtWebEngineCore 0x000000011ecf2eb8 0x11adf3000 + 66059960
8 QtWebEngineCore 0x000000011ecf304a 0x11adf3000 + 66060362
9 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
10 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 10:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff20469cce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2049ce49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x000000011ed19d1b 0x11adf3000 + 66219291
3 QtWebEngineCore 0x0000000120de792d 0x11adf3000 + 100616493
4 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
5 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 11:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff204672aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2046761c mach_msg + 60
2 QtWebEngineCore 0x000000011ed21e26 0x11adf3000 + 66252326
3 QtWebEngineCore 0x000000011ec57168 0x11adf3000 + 65421672
4 QtWebEngineCore 0x000000011ecd0a5c 0x11adf3000 + 65919580
5 QtWebEngineCore 0x000000011ec88998 0x11adf3000 + 65624472
6 QtWebEngineCore 0x000000011ecf2eb8 0x11adf3000 + 66059960
7 QtWebEngineCore 0x000000011ecf304a 0x11adf3000 + 66060362
8 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
9 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 12:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff204701c2 kevent64 + 10
1 QtWebEngineCore 0x000000011ed53a2a 0x11adf3000 + 66456106
2 QtWebEngineCore 0x000000011ed53927 0x11adf3000 + 66455847
3 QtWebEngineCore 0x000000011ecd0a5c 0x11adf3000 + 65919580
4 QtWebEngineCore 0x000000011ec88998 0x11adf3000 + 65624472
5 QtWebEngineCore 0x000000011ecf2eb8 0x11adf3000 + 66059960
6 QtWebEngineCore 0x000000011ecf304a 0x11adf3000 + 66060362
7 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
8 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204672aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2046761c mach_msg + 60
2 QtWebEngineCore 0x000000011ed21e26 0x11adf3000 + 66252326
3 QtWebEngineCore 0x000000011ed21bef 0x11adf3000 + 66251759
4 QtWebEngineCore 0x000000011ec571c9 0x11adf3000 + 65421769
5 QtWebEngineCore 0x000000011ecd0a5c 0x11adf3000 + 65919580
6 QtWebEngineCore 0x000000011ec88998 0x11adf3000 + 65624472
7 QtWebEngineCore 0x000000011ecf2eb8 0x11adf3000 + 66059960
8 QtWebEngineCore 0x000000011ecf304a 0x11adf3000 + 66060362
9 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
10 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 14:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff204672aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2046761c mach_msg + 60
2 QtWebEngineCore 0x000000011ed21e26 0x11adf3000 + 66252326
3 QtWebEngineCore 0x000000011ed21bef 0x11adf3000 + 66251759
4 QtWebEngineCore 0x000000011ec571c9 0x11adf3000 + 65421769
5 QtWebEngineCore 0x000000011ecd0a5c 0x11adf3000 + 65919580
6 QtWebEngineCore 0x000000011ec88998 0x11adf3000 + 65624472
7 QtWebEngineCore 0x000000011ecf2eb8 0x11adf3000 + 66059960
8 QtWebEngineCore 0x000000011ecf304a 0x11adf3000 + 66060362
9 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
10 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 15:: NetworkService
0 libsystem_kernel.dylib 0x00007fff204701c2 kevent64 + 10
1 QtWebEngineCore 0x000000011ed53a2a 0x11adf3000 + 66456106
2 QtWebEngineCore 0x000000011ed53927 0x11adf3000 + 66455847
3 QtWebEngineCore 0x000000011ecd0a5c 0x11adf3000 + 65919580
4 QtWebEngineCore 0x000000011ec88998 0x11adf3000 + 65624472
5 QtWebEngineCore 0x000000011ecf2eb8 0x11adf3000 + 66059960
6 QtWebEngineCore 0x000000011ecf304a 0x11adf3000 + 66060362
7 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
8 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204672aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2046761c mach_msg + 60
2 QtWebEngineCore 0x000000011ed21e26 0x11adf3000 + 66252326
3 QtWebEngineCore 0x000000011ed21bef 0x11adf3000 + 66251759
4 QtWebEngineCore 0x000000011ec571c9 0x11adf3000 + 65421769
5 QtWebEngineCore 0x000000011ecd0a5c 0x11adf3000 + 65919580
6 QtWebEngineCore 0x000000011ec88998 0x11adf3000 + 65624472
7 QtWebEngineCore 0x000000011ecf2eb8 0x11adf3000 + 66059960
8 QtWebEngineCore 0x000000011ecf304a 0x11adf3000 + 66060362
9 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
10 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 17:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff204672aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2046761c mach_msg + 60
2 QtWebEngineCore 0x000000011ed21e26 0x11adf3000 + 66252326
3 QtWebEngineCore 0x000000011ece67bf 0x11adf3000 + 66009023
4 QtWebEngineCore 0x000000011ece726c 0x11adf3000 + 66011756
5 QtWebEngineCore 0x000000011ece6ecd 0x11adf3000 + 66010829
6 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
7 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 18:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204672aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2046761c mach_msg + 60
2 QtWebEngineCore 0x000000011ed21e26 0x11adf3000 + 66252326
3 QtWebEngineCore 0x000000011ed21bef 0x11adf3000 + 66251759
4 QtWebEngineCore 0x000000011ec571c9 0x11adf3000 + 65421769
5 QtWebEngineCore 0x000000011ecd0a5c 0x11adf3000 + 65919580
6 QtWebEngineCore 0x000000011ec88998 0x11adf3000 + 65624472
7 QtWebEngineCore 0x000000011ecf2eb8 0x11adf3000 + 66059960
8 QtWebEngineCore 0x000000011ecf304a 0x11adf3000 + 66060362
9 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
10 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 19:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff204672aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2046761c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff20594ecf __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff205935af __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff205929bc CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff22f21bba _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 20:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff204672aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2046761c mach_msg + 60
2 QtWebEngineCore 0x000000011ed21e26 0x11adf3000 + 66252326
3 QtWebEngineCore 0x000000011ed21bef 0x11adf3000 + 66251759
4 QtWebEngineCore 0x000000011ec571c9 0x11adf3000 + 65421769
5 QtWebEngineCore 0x000000011ecd0a5c 0x11adf3000 + 65919580
6 QtWebEngineCore 0x000000011ec88998 0x11adf3000 + 65624472
7 QtWebEngineCore 0x000000011ecf2eb8 0x11adf3000 + 66059960
8 QtWebEngineCore 0x000000011ecf304a 0x11adf3000 + 66060362
9 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
10 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 21:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff204672aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2046761c mach_msg + 60
2 QtWebEngineCore 0x000000011ed21e26 0x11adf3000 + 66252326
3 QtWebEngineCore 0x000000011ece67bf 0x11adf3000 + 66009023
4 QtWebEngineCore 0x000000011ece6f9a 0x11adf3000 + 66011034
5 QtWebEngineCore 0x000000011ece6e0d 0x11adf3000 + 66010637
6 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
7 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 22:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204672aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2046761c mach_msg + 60
2 QtWebEngineCore 0x000000011ed21e26 0x11adf3000 + 66252326
3 QtWebEngineCore 0x000000011ed21bef 0x11adf3000 + 66251759
4 QtWebEngineCore 0x000000011ec571c9 0x11adf3000 + 65421769
5 QtWebEngineCore 0x000000011ecd0a5c 0x11adf3000 + 65919580
6 QtWebEngineCore 0x000000011ec88998 0x11adf3000 + 65624472
7 QtWebEngineCore 0x000000011ecf2eb8 0x11adf3000 + 66059960
8 QtWebEngineCore 0x000000011ecf304a 0x11adf3000 + 66060362
9 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
10 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 23:: CacheThread_BlockFile
0 libsystem_kernel.dylib 0x00007fff204701c2 kevent64 + 10
1 QtWebEngineCore 0x000000011ed53a2a 0x11adf3000 + 66456106
2 QtWebEngineCore 0x000000011ed53927 0x11adf3000 + 66455847
3 QtWebEngineCore 0x000000011ecd0a5c 0x11adf3000 + 65919580
4 QtWebEngineCore 0x000000011ec88998 0x11adf3000 + 65624472
5 QtWebEngineCore 0x000000011ecf2eb8 0x11adf3000 + 66059960
6 QtWebEngineCore 0x000000011ecf304a 0x11adf3000 + 66060362
7 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
8 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 24:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff204672aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2046761c mach_msg + 60
2 QtWebEngineCore 0x000000011ed21e26 0x11adf3000 + 66252326
3 QtWebEngineCore 0x000000011ece67bf 0x11adf3000 + 66009023
4 QtWebEngineCore 0x000000011ece726c 0x11adf3000 + 66011756
5 QtWebEngineCore 0x000000011ece6e6d 0x11adf3000 + 66010733
6 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
7 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 25:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff204672aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2046761c mach_msg + 60
2 QtWebEngineCore 0x000000011ed21e26 0x11adf3000 + 66252326
3 QtWebEngineCore 0x000000011ece67bf 0x11adf3000 + 66009023
4 QtWebEngineCore 0x000000011ece726c 0x11adf3000 + 66011756
5 QtWebEngineCore 0x000000011ece6e6d 0x11adf3000 + 66010733
6 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
7 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 26:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff204672aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2046761c mach_msg + 60
2 QtWebEngineCore 0x000000011ed21e26 0x11adf3000 + 66252326
3 QtWebEngineCore 0x000000011ece67bf 0x11adf3000 + 66009023
4 QtWebEngineCore 0x000000011ece726c 0x11adf3000 + 66011756
5 QtWebEngineCore 0x000000011ece6ddd 0x11adf3000 + 66010589
6 QtWebEngineCore 0x000000011ed1a908 0x11adf3000 + 66222344
7 libsystem_pthread.dylib 0x00007fff2049c8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20498443 thread_start + 15
Thread 27:
0 libsystem_pthread.dylib 0x00007fff20498420 start_wqthread + 0
Thread 28:
0 libsystem_pthread.dylib 0x00007fff20498420 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00000001131d0e00 rcx: 0x00007feb980e7a58 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x000000000000000b rbp: 0x00007feb980e7a80 rsp: 0x00007feb980e7a58
r8: 0x00007feb980e7f48 r9: 0x6cf20376fa9ef864 r10: 0x00000001131d0e00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x00007feb91c047f0 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff2046d91e rfl: 0x0000000000000246 cr2: 0x00000001057187b8
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream:
48 c1 e1 20 48 09 ca 48-83 c4 18 5b 41 5c 41 5d H.. H..H...[A\A]
41 5e 41 5f 5d c3 66 2e-0f 1f 84 00 00 00 00 00 A^A_].f.........
66 90 55 48 89 e5 41 57-41 56 53 50 48 85 f6 74 f.UH..AWAVSPH..t
5f 49 89 f6 48 89 fb 48-8b 07 45 31 ff 31 f6 eb _I..H..H..E1.1..
0e 90 41 83 c7 01 48 8b-03 48 89 df 44 89 fe ff ..A...H..H..D...
90 a8 00 00 00 48 85 c0-74 3b 48 8b 08 48 89 c7 .....H..t;H..H..
[ff]51 68 4c 39 f0 75 da-48 8b 03 48 89 df 44 89 .QhL9.u.H..H..D. /Applications/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
0x1054af000 - 0x105717fff +org.python.python (3.9.11, [c] 2001-2021 Python Software Foundation. - 3.9.11) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/Python
0x105894000 - 0x105896fff +_heapq.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_heapq.cpython-39-darwin.so
0x1058a0000 - 0x1058a4fff +binascii.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/binascii.cpython-39-darwin.so
0x1058ae000 - 0x1058b3fff +zlib.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/zlib.cpython-39-darwin.so
0x1058bd000 - 0x1058bffff +_bz2.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bz2.cpython-39-darwin.so
0x1058c9000 - 0x1058fafff +_lzma.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_lzma.cpython-39-darwin.so
0x10590c000 - 0x10590dfff +grp.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/grp.cpython-39-darwin.so
0x105917000 - 0x10591cfff +_struct.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_struct.cpython-39-darwin.so
0x10592b000 - 0x105933fff +math.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/math.cpython-39-darwin.so
0x105941000 - 0x105942fff +_bisect.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bisect.cpython-39-darwin.so
0x10594c000 - 0x10594dfff +_random.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_random.cpython-39-darwin.so
0x105957000 - 0x10595bfff +_sha512.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_sha512.cpython-39-darwin.so
0x105965000 - 0x105965fff +_arrays.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/arrays/_arrays.cpython-39-darwin.so
0x10596f000 - 0x105a10fff +libarrays.dylib (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/arrays/lib/libarrays.dylib
0x105a36000 - 0x105a3bfff +_json.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_json.cpython-39-darwin.so
0x105a45000 - 0x105e88fff +_multiarray_umath.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_umath.cpython-39-darwin.so
0x105fe1000 - 0x109cf0fff +libopenblas64_.0.dylib (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libopenblas64_.0.dylib
0x109fad000 - 0x10a0c4fff +libgfortran.3.dylib (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgfortran.3.dylib
0x10a133000 - 0x10a169fff +libquadmath.0.dylib (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x10a17f000 - 0x10a194fff +libgcc_s.1.dylib (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgcc_s.1.dylib
0x1121a6000 - 0x1121b5fff +_datetime.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_datetime.cpython-39-darwin.so
0x1121c9000 - 0x1121e0fff +_pickle.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_pickle.cpython-39-darwin.so
0x1121f3000 - 0x112206fff +_multiarray_tests.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_tests.cpython-39-darwin.so
0x112223000 - 0x112225fff +_posixsubprocess.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_posixsubprocess.cpython-39-darwin.so
0x11222f000 - 0x112233fff +select.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/select.cpython-39-darwin.so
0x11223d000 - 0x11224efff +_ctypes.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_ctypes.cpython-39-darwin.so
0x112267000 - 0x112282fff +_umath_linalg.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/linalg/_umath_linalg.cpython-39-darwin.so
0x11229f000 - 0x1122b2fff +_pocketfft_internal.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/fft/_pocketfft_internal.cpython-39-darwin.so
0x1122bf000 - 0x112332fff +mtrand.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/mtrand.cpython-39-darwin.so
0x112397000 - 0x1123b6fff +bit_generator.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/bit_generator.cpython-39-darwin.so
0x1123db000 - 0x11240efff +_common.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_common.cpython-39-darwin.so
0x11242f000 - 0x112435fff +_hashlib.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_hashlib.cpython-39-darwin.so
0x112444000 - 0x11249dfff +libssl.1.1.dylib (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/libssl.1.1.dylib
0x1124cf000 - 0x1126e6fff +libcrypto.1.1.dylib (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/libcrypto.1.1.dylib
0x112786000 - 0x11278cfff +_blake2.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_blake2.cpython-39-darwin.so
0x112796000 - 0x1127e9fff +_bounded_integers.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_bounded_integers.cpython-39-darwin.so
0x11281a000 - 0x112829fff +_mt19937.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_mt19937.cpython-39-darwin.so
0x11283e000 - 0x11284dfff +_philox.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_philox.cpython-39-darwin.so
0x112862000 - 0x112871fff +_pcg64.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_pcg64.cpython-39-darwin.so
0x112886000 - 0x11288dfff +_sfc64.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_sfc64.cpython-39-darwin.so
0x11289e000 - 0x11292dfff +_generator.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_generator.cpython-39-darwin.so
0x11299e000 - 0x11299efff +_opcode.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_opcode.cpython-39-darwin.so
0x1129a8000 - 0x1129c6fff +_geometry.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/geometry/_geometry.cpython-39-darwin.so
0x1129dd000 - 0x112b60fff +QtCore.abi3.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/QtCore.abi3.so
0x112dba000 - 0x112dd1fff +sip.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/sip.cpython-39-darwin.so
0x112dea000 - 0x112e75fff +QtDBus (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtDBus.framework/Versions/A/QtDBus
0x112e9a000 - 0x112ea9fff +QtWebEngineWidgets.abi3.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/QtWebEngineWidgets.abi3.so
0x112ebe000 - 0x112ed1fff +QtWebEngineWidgets (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtWebEngineWidgets.framework/Versions/A/QtWebEngineWidgets
0x112eea000 - 0x112f35fff +QtPrintSupport (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtPrintSupport.framework/Versions/A/QtPrintSupport
0x112f66000 - 0x112fcdfff +QtOpenGL (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtOpenGL.framework/Versions/A/QtOpenGL
0x112ffe000 - 0x113085fff +QtQmlModels (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtQmlModels.framework/Versions/A/QtQmlModels
0x1130b6000 - 0x1130c9fff +QtQuickWidgets (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt6/Qt6/lib/QtQuickWidgets.framework/Versions/A/QtQuickWidgets
0x1130f9000 - 0x113194fff dyld (852.2) /usr/lib/dyld
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0x7fff3d439000 - 0x7fff3d450fff com.apple.SafariServices.framework (16611 - 16611.3.10.1.16) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x7fff3d603000 - 0x7fff3d60efff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x7fff3d623000 - 0x7fff3d635fff libmis.dylib (274.140.2) /usr/lib/libmis.dylib
0x7fff3d636000 - 0x7fff3d639fff com.apple.gpusw.GPURawCounter (20.3 - 12.0) /System/Library/PrivateFrameworks/GPURawCounter.framework/Versions/A/GPURawCounter
0x7fff3d652000 - 0x7fff3d7c1fff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x7fff3d7c2000 - 0x7fff3da1dfff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3da1e000 - 0x7fff3db34fff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3db35000 - 0x7fff3db46fff com.apple.sidecar-ui (1.0 - 231.0.1) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3e169000 - 0x7fff3e1cbfff com.apple.ImageCaptureCore (1711.5.2.1 - 1711.5.2.1) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e1cc000 - 0x7fff3e1f1fff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3e43d000 - 0x7fff3e59ffff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x7fff3e5a0000 - 0x7fff3e881fff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud
0x7fff3e8ad000 - 0x7fff3e9d9fff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3e9da000 - 0x7fff3ee7afff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3ee7b000 - 0x7fff3ef63fff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff3fcaa000 - 0x7fff3fd27fff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput
0x7fff40ec2000 - 0x7fff40ec5fff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff412ea000 - 0x7fff41308fff libCGInterfaces.dylib (544.5) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff42988000 - 0x7fff436e8fff libfaceCore.dylib (4.3.1) /System/Library/Frameworks/Vision.framework/libfaceCore.dylib
0x7fff436e9000 - 0x7fff437fcfff com.apple.TextRecognition (1.0 - 157) /System/Library/PrivateFrameworks/TextRecognition.framework/Versions/A/TextRecognition
0x7fff437fd000 - 0x7fff43815fff com.apple.Futhark (1.0 - 1) /System/Library/PrivateFrameworks/Futhark.framework/Versions/A/Futhark
0x7fff43897000 - 0x7fff43b0afff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff44373000 - 0x7fff44377fff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff45cee000 - 0x7fff45cf1fff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x7fff463dd000 - 0x7fff463e8fff libGPUSupportMercury.dylib (18.5.9) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff47a13000 - 0x7fff47a54fff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff482a2000 - 0x7fff482bdfff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff5149b000 - 0x7fff514c8fff com.apple.HelpData (2.3 - 201.1) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x7fff514c9000 - 0x7fff514e3fff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff514e4000 - 0x7fff51583fff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff51773000 - 0x7fff51776fff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x7fff53e0c000 - 0x7fff53e42fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff55439000 - 0x7fff5543cfff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff5db74000 - 0x7fff5dffffff com.apple.driver.AppleIntelKBLGraphicsMTLDriver (16.5.13 - 16.0.5) /System/Library/Extensions/AppleIntelKBLGraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsMTLDriver
0x7fff5ed98000 - 0x7fff5fd7ffff com.apple.driver.AppleIntelKBLGraphicsGLDriver (16.5.13 - 16.0.5) /System/Library/Extensions/AppleIntelKBLGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsGLDriver
0x7fff69531000 - 0x7fff69535fff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6b97c000 - 0x7fff6b982fff libCoreFSCache.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6b983000 - 0x7fff6b987fff libCoreVMClient.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6b988000 - 0x7fff6b997fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6b998000 - 0x7fff6b99afff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6b99b000 - 0x7fff6b9a3fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6b9a4000 - 0x7fff6b9d7fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6b9d8000 - 0x7fff6ba14fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6ba15000 - 0x7fff6bba8fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bba9000 - 0x7fff6bbb3fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bbb4000 - 0x7fff6bd31fff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6bd32000 - 0x7fff6bd5afff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6cff3000 - 0x7fff6d04bfff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e0f5000 - 0x7fff6e0fcfff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e0fd000 - 0x7fff6e1e4fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f766000 - 0x7fff6f778fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73a96000 - 0x7fff73aa1fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73cb7000 - 0x7fff73ccffff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff775df000 - 0x7fff775e6fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=4.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=4.3G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 512K 4
Activity Tracing 256K 1
CG backing stores 2160K 6
CG image 184K 37
CoreAnimation 76K 17
CoreGraphics 12K 2
CoreUI image data 1780K 27
Foundation 36K 2
Kernel Alloc Once 8K 1
MALLOC 2.9G 345
MALLOC guard page 48K 10
MALLOC_MEDIUM (reserved) 992.0M 12 reserved VM address space (unallocated)
Mach message 24K 4
OpenGL GLSL 384K 4
STACK GUARD 112K 28
Stack 172.2M 29
Stack Guard 56.0M 1
VM_ALLOCATE 134.4M 199
VM_ALLOCATE (reserved) 96.0M 2 reserved VM address space (unallocated)
__DATA 36.3M 641
__DATA_CONST 27.6M 311
__DATA_DIRTY 1706K 212
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 531.8M 265
__OBJC_RO 70.3M 1
__OBJC_RW 2496K 2
__TEXT 661.7M 623
__UNICODE 588K 1
mapped file 275.2M 69
shared memory 3488K 28
=========== ======= =======
TOTAL 5.9G 2886
TOTAL, minus reserved VM space 4.9G 2886
===== Log before crash start =====
UCSF ChimeraX version: 1.6.dev202210270020 (2022-10-27)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/dmoazed/Desktop/Dropbox/AA/ Alphafold predictions/alphafold2
> protein interaction
> prediction/PCGF4-ubiquitin/results42_10/_unrelaxed_rank_1_model_2.pdb"
Chain information for _unrelaxed_rank_1_model_2.pdb #1
---
Chain | Description
B | No description available
C | No description available
> color bychain
> ui tool show "AlphaFold Error Plot"
> alphafold pae #1 file "/Users/dmoazed/Desktop/Dropbox/AA/ Alphafold
> predictions/alphafold2 protein interaction
> prediction/PCGF4-ubiquitin/results42_10/_unrelaxed_rank_1_model_2_scores.json"
> color bfactor #1 palette alphafold
3186 atoms, 402 residues, atom bfactor range 17.9 to 98.1
> alphafold pae #1 colorDomains true
> color bfactor #1 palette alphafold
3186 atoms, 402 residues, atom bfactor range 17.9 to 98.1
> alphafold contacts /B toResidues C/
Invalid "toResidues" argument: only initial part "C" of atom specifier valid
> interfaces ~solvent
1 buried areas: B C 579
> open "/Users/dmoazed/Desktop/Dropbox/AA/ Alphafold predictions/alphafold2
> protein interaction
> prediction/WDR18-H2A-H2B/results24_10/_unrelaxed_rank_1_model_5.pdb"
Chain information for _unrelaxed_rank_1_model_5.pdb #2
---
Chain | Description
B | No description available
C | No description available
D | No description available
> hide #1 models
> color #2 bychain
> ui tool show "AlphaFold Error Plot"
> alphafold pae #1 file "/Users/dmoazed/Desktop/Dropbox/AA/ Alphafold
> predictions/alphafold2 protein interaction
> prediction/PCGF4-ubiquitin/results42_10/_unrelaxed_rank_1_model_2_scores.json"
> color bfactor #1 palette alphafold
3186 atoms, 402 residues, atom bfactor range 17.9 to 98.1
> alphafold pae #1 colorDomains true
> color bfactor #1 palette alphafold
3186 atoms, 402 residues, atom bfactor range 17.9 to 98.1
> interfaces #2 & ~solvent
2 buried areas: C D 2705, B D 574
> close session
> open "/Users/dmoazed/Desktop/Dropbox/AA/ Alphafold predictions/alphafold2
> protein interaction
> prediction/WDR18-H2A-H2B/results24_10/_unrelaxed_rank_1_model_5.pdb"
Chain information for _unrelaxed_rank_1_model_5.pdb #1
---
Chain | Description
B | No description available
C | No description available
D | No description available
> ui tool show "AlphaFold Error Plot"
> alphafold pae #1 file "/Users/dmoazed/Desktop/Dropbox/AA/ Alphafold
> predictions/alphafold2 protein interaction
> prediction/WDR18-H2A-H2B/results24_10/_unrelaxed_rank_1_model_5_scores.json"
> alphafold pae #1 colorDomains true
> color bfactor #1 palette alphafold
4710 atoms, 611 residues, atom bfactor range 20 to 98.7
> interfaces ~solvent
2 buried areas: C D 2705, B D 574
Alignment identifier is 1/B
Alignment identifier is 1/D
Destroying pre-existing alignment with identifier 1/B
Alignment identifier is 1/B
Destroying pre-existing alignment with identifier 1/D
Alignment identifier is 1/D
> open "/Users/dmoazed/Desktop/Dropbox/AA/ Alphafold predictions/alphafold2
> protein interaction
> prediction/CBX7-USP7/results63_10/_unrelaxed_rank_1_model_2.pdb"
Chain information for _unrelaxed_rank_1_model_2.pdb #2
---
Chain | Description
B | No description available
C | No description available
> hide #1 models
> color #2 bychain
> open "/Users/dmoazed/Desktop/Dropbox/AA/ Alphafold predictions/alphafold2
> protein interaction
> prediction/RING1B-USP7/results60_10/_unrelaxed_rank_1_model_4.pdb"
Chain information for _unrelaxed_rank_1_model_4.pdb #3
---
Chain | Description
B | No description available
C | No description available
> hide #2 models
> color #3 bychain
> open "/Users/dmoazed/Desktop/Dropbox/AA/ Alphafold
> predictions/prediction_Swi6 CD H3 tail/best_model.pdb"
Chain information for best_model.pdb #4
---
Chain | Description
B | No description available
C | No description available
> hide #3 models
> color #4 bychain
> close session
> open "/Users/dmoazed/Desktop/Dropbox/AA/ Alphafold
> predictions/prediction_Swi6 CD H3 tail/best_model.pdb"
Chain information for best_model.pdb #1
---
Chain | Description
B | No description available
C | No description available
> color bychain
> open "/Users/dmoazed/Desktop/Dropbox/AA/ Alphafold predictions/alphafold2
> protein interaction
> prediction/KDM2B-RING1B-PCGF1-RYBP/results22_5/_unrelaxed_rank_1_model_4.pdb"
Chain information for _unrelaxed_rank_1_model_4.pdb #2
---
Chain | Description
B | No description available
C | No description available
D | No description available
E | No description available
> hide #1 models
> color #2 bychain
Alignment identifier is 1/B
Alignment identifier is 1/C
Alignment identifier is 2/B
Alignment identifier is 2/C
Alignment identifier is 2/D
Alignment identifier is 2/E
> close session
> open "/Users/dmoazed/Library/Containers/com.apple.mail/Data/Library/Mail
> Downloads/FF8563A1-6D93-4EBA-AA6D-01A378F78AED/Swi1_Spt16_Mcm2_histone
> complex.cxs"
opened ChimeraX session
> open "/Users/dmoazed/Library/Containers/com.apple.mail/Data/Library/Mail
> Downloads/86649490-6BEF-4AC8-9505-48E04F73E064/Swi1_Spt16_Mcm2_histone
> complex.cxs"
opened ChimeraX session
> open "/Users/dmoazed/Desktop/Dropbox/A/B-Manuscripts/2020-BAH/Data and
> Figures/chimerax models/Fig3C-h3k79.cxs"
opened ChimeraX session
> hide #!2 models
> show #!2 models
> hide #3 models
> show #3 models
> show #!1 models
> hide #!1 models
> log metadata #2
No models had metadata
> log chains #2
Chain information for 4jjn #2
---
Chain | Description
A E | No description available
B F | No description available
C G | No description available
D H | No description available
I | No description available
J | No description available
K L | No description available
> select #2/B:14-102
712 atoms, 720 bonds, 89 residues, 1 model selected
> ui tool show "Show Sequence Viewer"
> sequence chain #2/B #2/F
Alignment identifier is 1
> select #2/B,F:24-41,49-76,82-93
938 atoms, 944 bonds, 116 residues, 1 model selected
> view #2 clip false
> log metadata #2
No models had metadata
> log chains #2
Chain information for 4jjn #2
---
Chain | Description
A E | No description available
B F | No description available
C G | No description available
D H | No description available
I | No description available
J | No description available
K L | No description available
> ui tool show "Show Sequence Viewer"
Alignment identifier is 2
> sequence chain #2/B#2/F
Alignment identifier is 3
> sequence chain #2/C#2/G
Alignment identifier is 4
> sequence chain #2/B#2/F
Alignment identifier is 5
> select #2/B,F:24-41,49-76,82-93
938 atoms, 944 bonds, 116 residues, 1 model selected
> select #2/C,G:17-22,27-37,47-74,80-89,91-98,113-117
1072 atoms, 1076 bonds, 136 residues, 1 model selected
> close session
> ui tool show AlphaFold
> alphafold predict
> MDNWEDPNFELRNLRVIDLKKILHESGVSFPVNARKIEYIRMVDRIRKNKLSSGPQHLLSHLQKEENSNTSKASSSEDEIAPKYLYPSSPSKSTKKPHNETEPLLSPQFIDKPSNIETPVKIESPHVSQNNTFQSYSELSPNVETSLTMKTPPAHASTPKFRSHKSHRVAVPMSFMDSSALHTSPAFSERLKLLSSSNNFSPQLRSPKISHRLQTSATSSPLQHKRPFTNVPERVSRDIEFAPLDSARPSESSSPYSEVDSAEEDDELFQNYVLQQTRKESKLWSFIKKVFHDIKYANYRLLHNLRAFPGISAISSSYLVHIFMILLGVVAAIFLALLREKMFTAGFCDSGASGSSASILGISFPSLCRTCPPNAICPSPNYVECKPGYVLYEPWYSSLGFWPSKYCVSDTSREESVNIFREECLSVLRSWNAILHCSNNSSDLLERNMSYNAHPYVADNLNISSDHISFPSKPFALGLLHDTLLERKSPTLGLEMFEDLFKASLAVLSETNEVVMDSKLICYDSWAGIPLRCRLKQQLIKFVWRNKVFLFGILALSGVIFKLINFFRTRSIVAKYLPSASRFCVESLKRQKANYQMSRSQEPVIPLIEMHDILFHGNGPLEQIHMTKATARTLWEAIVERVEQVGSVRTRESEVDGEWTRVWEWVGTNTLDFQTDRSFINTTSPLRE,MGKLIRRTSLTSKIINLPIDYFIYVCEQFDSVEWDKVSDRYSIPFSLAVNFIFLLMRIYIKSTHVPVQRNQLFVDKQSINTSRSWFRAFLSFLSICFLFISFLNFIFSTRFQNKLYRTLPQDKRTTTSTPNVKPVFQHSNNDDGDEQVFELKVWSPNQFLLNFACLFSPAHALILWFYSTSLRVTLLTFLLSFTTLHFVNKFSLLLKDQQYLHRQVFFEYDKKFVEPRLSVVKRDVAINTTRGPTTASIEYFTPRKPIDTFLEHRSSSHDHLTSTPRTPIALQRRSVHHLHDSGISRDSSSPFKRFPHLSDGSSRF
Please cite ColabFold: Making protein folding accessible to all. Nature
Methods (2022) if you use these predictions.
Running AlphaFold prediction
===== Log before crash end =====
Log:
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.6.dev202210270020 (2022-10-27)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-16.5.13
OpenGL renderer: Intel(R) UHD Graphics 630
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: Mac mini
Model Identifier: Macmini8,1
Processor Name: 6-Core Intel Core i7
Processor Speed: 3.2 GHz
Number of Processors: 1
Total Number of Cores: 6
L2 Cache (per Core): 256 KB
L3 Cache: 12 MB
Hyper-Threading Technology: Enabled
Memory: 64 GB
System Firmware Version: 1731.140.2.0.0 (iBridge: 19.16.16064.0.0,0)
Software:
System Software Overview:
System Version: macOS 11.6.8 (20G730)
Kernel Version: Darwin 20.6.0
Time since boot: 36 days 18:27
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0000
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
SwitchResX4 - LG HDR WQHD:
Resolution: 3840 x 1600 (Ultra-wide 4K)
UI Looks like: 3840 x 1600 @ 75.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
Connection Type: Thunderbolt/DisplayPort
Television: Yes
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.0.8
Babel: 2.10.3
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.4
ChimeraX-AddH: 2.2.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.3
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.8
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.43.2
ChimeraX-AtomicLibrary: 8.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.dev202210270020
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.1
ChimeraX-PDB: 2.6.8
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.25
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.3
decorator: 5.1.1
docutils: 0.19
entrypoints: 0.4
executing: 1.1.1
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.7.31
imagesize: 1.4.1
importlib-metadata: 5.0.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 4.11.2
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.4
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
prompt-toolkit: 3.0.31
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.5
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.2.1
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
setuptools: 65.1.1
setuptools-scm: 7.0.5
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.5.1
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
typing-extensions: 4.4.0
urllib3: 1.26.12
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.10.0
Change History (2)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in removeDockWidget |
comment:2 by , 3 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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Predates the "two widgets in same layout" fix