Opened 3 years ago

Closed 3 years ago

#8778 closed defect (duplicate)

2D Builder: HTTP Error 500: Internal Server Error

Reported by: chimerax-bug-report@… Owned by: Tony Schaefer
Priority: normal Milestone:
Component: Third Party Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        macOS-11.3.1-arm64-arm-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> show cartoons

> ui tool show "2D Builder"

Please register the custom scheme 'editor' via
QWebEngineUrlScheme::registerScheme() before installing the custom scheme
handler.  

Traceback (most recent call last):  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 320, in interceptRequest  
self._callback(info)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 93, in _intercept  
return interceptor(request_info, *args)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/htmltool.py", line 112, in _navigate  
self.session.ui.thread_safe(self.handle_scheme, url)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/gui.py", line 364, in thread_safe  
func(*args, **kw)  
File "/Users/knightbowles/Library/Application Support/ChimeraX/1.5/site-
packages/SEQCROW/tools/mol_builder.py", line 595, in handle_scheme  
s_sd_get = urlopen(url, context=ssl.SSLContext())  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 214, in urlopen  
return opener.open(url, data, timeout)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 523, in open  
response = meth(req, response)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 632, in http_response  
response = self.parent.error(  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 561, in error  
return self._call_chain(*args)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 494, in _call_chain  
result = func(*args)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 641, in http_error_default  
raise HTTPError(req.full_url, code, msg, hdrs, fp)  
urllib.error.HTTPError: HTTP Error 500: Internal Server Error  
  
urllib.error.HTTPError: HTTP Error 500: Internal Server Error  
  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 641, in http_error_default  
raise HTTPError(req.full_url, code, msg, hdrs, fp)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 320, in interceptRequest  
self._callback(info)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 93, in _intercept  
return interceptor(request_info, *args)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/htmltool.py", line 112, in _navigate  
self.session.ui.thread_safe(self.handle_scheme, url)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/gui.py", line 364, in thread_safe  
func(*args, **kw)  
File "/Users/knightbowles/Library/Application Support/ChimeraX/1.5/site-
packages/SEQCROW/tools/mol_builder.py", line 595, in handle_scheme  
s_sd_get = urlopen(url, context=ssl.SSLContext())  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 214, in urlopen  
return opener.open(url, data, timeout)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 523, in open  
response = meth(req, response)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 632, in http_response  
response = self.parent.error(  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 561, in error  
return self._call_chain(*args)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 494, in _call_chain  
result = func(*args)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 641, in http_error_default  
raise HTTPError(req.full_url, code, msg, hdrs, fp)  
urllib.error.HTTPError: HTTP Error 500: Internal Server Error  
  
urllib.error.HTTPError: HTTP Error 500: Internal Server Error  
  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 641, in http_error_default  
raise HTTPError(req.full_url, code, msg, hdrs, fp)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 320, in interceptRequest  
self._callback(info)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 93, in _intercept  
return interceptor(request_info, *args)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/htmltool.py", line 112, in _navigate  
self.session.ui.thread_safe(self.handle_scheme, url)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/gui.py", line 364, in thread_safe  
func(*args, **kw)  
File "/Users/knightbowles/Library/Application Support/ChimeraX/1.5/site-
packages/SEQCROW/tools/mol_builder.py", line 595, in handle_scheme  
s_sd_get = urlopen(url, context=ssl.SSLContext())  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 214, in urlopen  
return opener.open(url, data, timeout)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 523, in open  
response = meth(req, response)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 632, in http_response  
response = self.parent.error(  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 561, in error  
return self._call_chain(*args)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 494, in _call_chain  
result = func(*args)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 641, in http_error_default  
raise HTTPError(req.full_url, code, msg, hdrs, fp)  
urllib.error.HTTPError: HTTP Error 500: Internal Server Error  
  
urllib.error.HTTPError: HTTP Error 500: Internal Server Error  
  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 641, in http_error_default  
raise HTTPError(req.full_url, code, msg, hdrs, fp)  
  
See log for complete Python traceback.  
  

> hide #1 models

> ui tool show "Build QM Input"

> ui tool show "2D Builder"

Traceback (most recent call last):  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 320, in interceptRequest  
self._callback(info)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 93, in _intercept  
return interceptor(request_info, *args)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/htmltool.py", line 112, in _navigate  
self.session.ui.thread_safe(self.handle_scheme, url)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/gui.py", line 364, in thread_safe  
func(*args, **kw)  
File "/Users/knightbowles/Library/Application Support/ChimeraX/1.5/site-
packages/SEQCROW/tools/mol_builder.py", line 595, in handle_scheme  
s_sd_get = urlopen(url, context=ssl.SSLContext())  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 214, in urlopen  
return opener.open(url, data, timeout)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 523, in open  
response = meth(req, response)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 632, in http_response  
response = self.parent.error(  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 561, in error  
return self._call_chain(*args)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 494, in _call_chain  
result = func(*args)  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 641, in http_error_default  
raise HTTPError(req.full_url, code, msg, hdrs, fp)  
urllib.error.HTTPError: HTTP Error 500: Internal Server Error  
  
urllib.error.HTTPError: HTTP Error 500: Internal Server Error  
  
File
"/private/var/folders/8p/3xdgksmn07zbr1ctjycxzjdm0000gn/T/AppTranslocation/D50CC3E2-AA4B-4DA8-929A-7EED502C3869/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/urllib/request.py",
line 641, in http_error_default  
raise HTTPError(req.full_url, code, msg, hdrs, fp)  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 71.5.9
OpenGL renderer: Apple M1
OpenGL vendor: Apple

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Air
      Model Identifier: MacBookAir10,1
      Chip: Apple M1
      Total Number of Cores: 8 (4 performance and 4 efficiency)
      Memory: 8 GB
      System Firmware Version: 6723.101.4
      OS Loader Version: 6723.101.4

Software:

    System Software Overview:

      System Version: macOS 11.3.1 (20E241)
      Kernel Version: Darwin 20.4.0
      Time since boot: 12 days 6:21

Graphics/Displays:

    Apple M1:

      Chipset Model: Apple M1
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 7
      Vendor: Apple (0x106b)
      Metal Family: Supported, Metal GPUFamily Apple 7
      Displays:
        Color LCD:
          Resolution: 2880 x 1800
          UI Looks like: 1440 x 900 @ 60.00Hz
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: No
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.4
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.1.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.1.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.33
    psutil: 5.9.1
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.6
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.3.0
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    Send2Trash: 1.8.0
    SEQCROW: 1.5.14
    setuptools: 65.1.1
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    typing-extensions: 4.4.0
    urllib3: 1.26.13
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    zipp: 3.11.0

Change History (2)

comment:1 by Eric Pettersen, 3 years ago

Component: Unassigned → Third Party
Owner: set to Tony Schaefer
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → 2D Builder: HTTP Error 500: Internal Server Error

comment:2 by Eric Pettersen, 3 years ago

Resolution: → duplicate
Status: assigned → closed
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