![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#8745 closed defect (can't reproduce)
Crash getting text input from Save dialog?
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Platform | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-12.6.3-arm64-arm-64bit
ChimeraX Version: 1.5rc202211160223 (2022-11-16 02:23:03 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000001048ec580 (most recent call first):
File "/Applications/ChimeraX-1.5-rc2022.11.16.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/save_command/dialog.py", line 39 in display
File "/Applications/ChimeraX-1.5-rc2022.11.16.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/save_command/dialog.py", line 127 in show_save_file_dialog
File "/Applications/ChimeraX-1.5-rc2022.11.16.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/save_command/dialog.py", line 116 in
File "/Applications/ChimeraX-1.5-rc2022.11.16.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 283 in event_loop
File "/Applications/ChimeraX-1.5-rc2022.11.16.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 884 in init
File "/Applications/ChimeraX-1.5-rc2022.11.16.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1035 in
File "/Applications/ChimeraX-1.5-rc2022.11.16.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.5-rc2022.11.16.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
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{
"uptime" : 100000,
"procLaunch" : "2023-03-29 20:19:51.8666 +0200",
"procRole" : "Foreground",
"version" : 2,
"userID" : 502,
"deployVersion" : 210,
"modelCode" : "MacBookPro18,3",
"procStartAbsTime" : 2288386841458,
"coalitionID" : 1364,
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"build" : "21G419",
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"captureTime" : "2023-03-30 11:43:04.4824 +0200",
"incident" : "DE6B908B-6D23-4553-8AAA-82E88388B56E",
"bug_type" : "309",
"pid" : 14507,
"procExitAbsTime" : 2557492531300,
"translated" : false,
"cpuType" : "ARM-64",
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.5-rc2022.11.16.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.5.0","CFBundleVersion":"1.5.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
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"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "6BCDB5A8-2E87-DB6C-5B8D-3E0F465D6D26",
"wakeTime" : 5092,
"sleepWakeUUID" : "EA12EE6E-7856-44E4-BB01-532290C175E9",
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"isCorpse" : 1,
"exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"},
"ktriageinfo" : "VM - pmap_enter failed with resource shortage\n",
"vmregioninfo" : "0x18 is not in any region. Bytes before following region: 105554055790568\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600038000000-600040000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)",
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"uuid" : "a5992708-d5b4-36ec-ac0a-e525f6105b56",
"path" : "\/Applications\/ChimeraX-1.5-rc2022.11.16.app\/Contents\/MacOS\/ChimeraX",
"name" : "ChimeraX",
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"path" : "\/usr\/lib\/dyld",
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"path" : "\/Applications\/ChimeraX-1.5-rc2022.11.16.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
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"name" : "QtWebEngineCore"
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"vmSummary" : "ReadOnly portion of Libraries: Total=1.3G resident=0K(0%) swapped_out_or_unallocated=1.3G(100%)\nWritable regions: Total=2.8G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.8G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 768K 6 \nActivity Tracing 256K 1 \nCG backing stores 2880K 4 \nCG image 1696K 59 \nColorSync 640K 28 \nCoreAnimation 13.5M 209 \nCoreGraphics 48K 3 \nCoreUI image data 5440K 38 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 1.2G 252 \nMALLOC guard page 192K 10 \nMALLOC_MEDIUM (reserved) 832.0M 8 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)\nMach message 64K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 560K 35 \nStack 146.3M 36 \nStack Guard 56.0M 1 \nVM_ALLOCATE 203.8M 399 \nVM_ALLOCATE (reserved) 160.0M 4 reserved VM address space (unallocated)\n__AUTH 2654K 314 \n__AUTH_CONST 20.6M 512 \n__CTF 756 1 \n__DATA 23.2M 642 \n__DATA_CONST 27.3M 652 \n__DATA_DIRTY 1804K 216 \n__FONT_DATA 4K 1 \n__GLSLBUILTINS 5176K 1 \n__LINKEDIT 605.3M 141 \n__OBJC_CONST 3698K 285 \n__OBJC_RO 83.0M 1 \n__OBJC_RW 3168K 1 \n__TEXT 717.6M 670 \n__UNICODE 592K 1 \ndyld private memory 1184K 3 \nmapped file 207.3M 55 \nshared memory 3712K 24 \n=========== ======= ======= \nTOTAL 4.5G 4624 \nTOTAL, minus reserved VM space 3.3G 4624 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
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},
"trialInfo" : {
"rollouts" : [
{
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"factorPackIds" : {
"SIRI_DICTATION_ASSETS" : "631730a28520965d1cba0681"
},
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{
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}
===== Log before crash start =====
UCSF ChimeraX version: 1.5rc202211160223 (2022-11-16)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/lenz/Desktop/Nprotein_haddock.pdb format pdb
Summary of feedback from opening /Users/lenz/Desktop/Nprotein_haddock.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK FILENAME="complex_86w.pdb0"
Ignored bad PDB record found on line 2
REMARK ===============================================================
Ignored bad PDB record found on line 3
REMARK HADDOCK run for complex
Ignored bad PDB record found on line 4
REMARK initial structure: complex_86.pdb
Ignored bad PDB record found on line 5
REMARK ===============================================================
29 messages similar to the above omitted
Chain information for Nprotein_haddock.pdb #1
---
Chain | Description
A B | No description available
C D | No description available
> rainbow
> select add /B:178
6 atoms, 5 bonds, 1 residue, 1 model selected
> color sel bychain
> select clear
> color bychain
> select add /A:115
12 atoms, 12 bonds, 1 residue, 1 model selected
> select up
87 atoms, 92 bonds, 6 residues, 1 model selected
> select up
1190 atoms, 1218 bonds, 124 residues, 1 model selected
> hide sel cartoons
> select clear
> show cartoons
> coulombic
The following heavy (non-hydrogen) atoms are missing, which may result in
inaccurate electrostatics:
/A ALA 178 OXT
/B ALA 178 OXT
/C PHE 368 OXT
/D PHE 368 OXT
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for Nprotein_haddock.pdb_A SES surface #1.1: minimum, -9.85,
mean 1.54, maximum 12.78
Coulombic values for Nprotein_haddock.pdb_B SES surface #1.2: minimum, -9.72,
mean 1.62, maximum 14.35
Coulombic values for Nprotein_haddock.pdb_C SES surface #1.3: minimum, -10.83,
mean 0.56, maximum 12.96
Coulombic values for Nprotein_haddock.pdb_D SES surface #1.4: minimum, -11.37,
mean 0.59, maximum 12.77
To also show corresponding color key, enter the above coulombic command and
add key true
> hide surfaces
> rainbow
> close #1
> open /Volumes/vonAppen-lab/vonAppen-
> Swantje/alphapulldown_lem2/phd_course/predictions/N_protein_235-427_and_N_protein_235-427/ranked_0.pdb
Chain information for ranked_0.pdb #1
---
Chain | Description
B C | No description available
> ui tool show AlphaFold
> ui tool show "AlphaFold Error Plot"
> alphafold pae #1 file /Volumes/vonAppen-lab/vonAppen-
> Swantje/alphapulldown_lem2/phd_course/predictions/N_protein_235-427_and_N_protein_235-427/result_model_2_multimer_v3_pred_0.pkl
> alphafold pae #1 colorDomains true
> color #1/C:255-371 lime
> color #1/B:263-363 magenta
> color #1/B:372-427 lime
> color #1/B:260-369 lime
> color #1/C:255-370 lime
> color #1/B:264-363 magenta
> color #1/C:274-328 lime
> color #1/B:281-327 magenta
> color #1/C:295-307 lime
> color #1/B:288-302 magenta
> color bfactor #1 palette alphafold
3010 atoms, 386 residues, atom bfactor range 21.8 to 98.5
> color bychain
> ui tool show "AlphaFold Error Plot"
> alphafold pae #1 file /Volumes/vonAppen-lab/vonAppen-
> Swantje/alphapulldown_lem2/phd_course/predictions/N_protein_235-427_and_N_protein_235-427/result_model_2_multimer_v3_pred_0.pkl
> alphafold pae #1 colorDomains true
> select add /B:371
7 atoms, 6 bonds, 1 residue, 1 model selected
> delete atoms sel
> delete bonds sel
Drag select of 3 residues
Drag select of 17 residues
Drag select of 2 residues
> select up
443 atoms, 448 bonds, 57 residues, 1 model selected
> delete atoms sel
> delete bonds sel
Drag select of 2 residues
> select up
1055 atoms, 1076 bonds, 135 residues, 1 model selected
> select down
12 atoms, 2 residues, 1 model selected
> select down
12 atoms, 2 residues, 1 model selected
> select down
12 atoms, 2 residues, 1 model selected
> show sel atoms
> select clear
Drag select of 7 atoms, 2 residues, 6 bonds
> delete atoms sel
> delete bonds sel
> color bfactor #1 palette alphafold
2548 atoms, 326 residues, atom bfactor range 21.8 to 98.5
Drag select of 5 residues
Drag select of 13 residues
> select up
176 atoms, 175 bonds, 24 residues, 1 model selected
> select up
1043 atoms, 1064 bonds, 133 residues, 1 model selected
> select down
176 atoms, 175 bonds, 24 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> select add /B:260
6 atoms, 5 bonds, 1 residue, 1 model selected
> select up
20 atoms, 19 bonds, 3 residues, 1 model selected
> select up
867 atoms, 888 bonds, 109 residues, 1 model selected
> select down
20 atoms, 19 bonds, 3 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> rainbow
> save N_dimer_disorder.pdb #1
> open /Users/lenz/Desktop/Nprotein_haddock.pdb format pdb
Summary of feedback from opening /Users/lenz/Desktop/Nprotein_haddock.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK FILENAME="complex_86w.pdb0"
Ignored bad PDB record found on line 2
REMARK ===============================================================
Ignored bad PDB record found on line 3
REMARK HADDOCK run for complex
Ignored bad PDB record found on line 4
REMARK initial structure: complex_86.pdb
Ignored bad PDB record found on line 5
REMARK ===============================================================
29 messages similar to the above omitted
Chain information for Nprotein_haddock.pdb #2
---
Chain | Description
A B | No description available
C D | No description available
> ui tool show Matchmaker
> matchmaker #2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker ranked_0.pdb, chain B (#1) with Nprotein_haddock.pdb, chain C (#2),
sequence alignment score = 594.7
RMSD between 106 pruned atom pairs is 0.149 angstroms; (across all 106 pairs:
0.149)
> hide #!1 models
> color #2 bychain
> color #2 #55bef0ff
> show #!1 models
> close #2
> close #1
> open /Users/lenz/Desktop/N_dimer_disorder.pdb format pdb
Chain information for N_dimer_disorder.pdb #1
---
Chain | Description
B C | No description available
> open /Users/lenz/Documents/phd_course/presentation/c_term_disordered.pb
Opened Pseudobonds c_term_disordered.pb, 15 bonds
> color #2 #ffcc00ff models
Drag select of 10 residues
> select up
133 atoms, 132 bonds, 18 residues, 1 model selected
> delete atoms sel
> delete bonds sel
Drag select of 2 residues
> select up
49 atoms, 49 bonds, 6 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> hide #2 models
Drag select of 34 residues
> select up
692 atoms, 706 bonds, 90 residues, 1 model selected
> select up
2170 atoms, 2219 bonds, 275 residues, 1 model selected
> select down
692 atoms, 706 bonds, 90 residues, 1 model selected
> select clear
> color bychain
> select add /B:278
5 atoms, 4 bonds, 1 residue, 1 model selected
> select up
39 atoms, 39 bonds, 5 residues, 1 model selected
> select up
798 atoms, 818 bonds, 100 residues, 1 model selected
> color sel #E6ABB7
> select clear
> select add /C:332
6 atoms, 5 bonds, 1 residue, 1 model selected
Drag select of 29 residues
> select up
471 atoms, 479 bonds, 62 residues, 1 model selected
> select up
2170 atoms, 2219 bonds, 275 residues, 1 model selected
> select down
471 atoms, 479 bonds, 62 residues, 1 model selected
> color sel #E6ABB7
> select clear
Drag select of 6 residues
> select up
166 atoms, 168 bonds, 21 residues, 1 model selected
> select add /C:355
173 atoms, 174 bonds, 22 residues, 1 model selected
> select up
261 atoms, 265 bonds, 32 residues, 1 model selected
> color sel #E6ABB7
> select clear
Drag select of 49 residues
> select up
514 atoms, 520 bonds, 68 residues, 1 model selected
> select up
2170 atoms, 2219 bonds, 275 residues, 1 model selected
> select down
514 atoms, 520 bonds, 68 residues, 1 model selected
> color sel #E6ABB7
> select clear
Drag select of 19 residues
> select up
301 atoms, 306 bonds, 35 residues, 1 model selected
> color sel #E6ABB7
> select clear
> select :370-392
188 atoms, 190 bonds, 23 residues, 1 model selected
> show #2 models
> select clear
> style #2 dashes 0
Changed 1 pseudobond dash
> lighting soft
> set bgColor white
> graphics silhouettes true
> lighting gentle
> select :370-392
188 atoms, 190 bonds, 23 residues, 1 model selected
> color sel #E6C943
> select clear
Drag select of 7 residues
> select add /C:367
56 atoms, 6 bonds, 8 residues, 1 model selected
Drag select of 10 residues
> select up
495 atoms, 503 bonds, 64 residues, 1 model selected
> select up
1372 atoms, 1401 bonds, 175 residues, 1 model selected
> select down
495 atoms, 503 bonds, 64 residues, 1 model selected
> color sel #AC3A00
> select clear
> select add /C:263
7 atoms, 7 bonds, 1 residue, 1 model selected
> select add /C:362
15 atoms, 14 bonds, 2 residues, 1 model selected
> select add /C:363
23 atoms, 21 bonds, 3 residues, 1 model selected
> select subtract /C:263
16 atoms, 14 bonds, 2 residues, 1 model selected
> color sel #AC3A00
> select clear
> select add /C:262
9 atoms, 8 bonds, 1 residue, 1 model selected
> select add /C:263
16 atoms, 15 bonds, 2 residues, 1 model selected
> color sel #E6ABB7
> select clear
> ui tool show "Side View"
> save /Users/lenz/Desktop/image35.png supersample 3
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.5rc202211160223 (2022-11-16)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 76.3
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro18,3
Chip: Apple M1 Pro
Total Number of Cores: 8 (6 performance and 2 efficiency)
Memory: 32 GB
System Firmware Version: 8419.80.7
OS Loader Version: 7459.141.1
Software:
System Software Overview:
System Version: macOS 12.6.3 (21G419)
Kernel Version: Darwin 21.6.0
Time since boot: 3 days 1:51
Graphics/Displays:
Apple M1 Pro:
Chipset Model: Apple M1 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 14
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
PN-70TH5:
Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Main Display: Yes
Mirror: On
Mirror Status: Master Mirror
Online: Yes
Rotation: Supported
Television: Yes
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Mirror: On
Mirror Status: Hardware Mirror
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.1.0
Babel: 2.11.0
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.4
ChimeraX-AddH: 2.2.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.6
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.41.5
ChimeraX-AtomicLibrary: 8.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.4
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.5rc202211160223
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.1
ChimeraX-PDB: 2.6.8
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.7.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.24.3
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.3
decorator: 5.1.1
docutils: 0.19
entrypoints: 0.4
executing: 1.2.0
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.7.31
imagesize: 1.4.1
importlib-metadata: 5.0.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 5.0.0
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.4
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
platformdirs: 2.5.4
prompt-toolkit: 3.0.32
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.6
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
setuptools: 65.1.1
setuptools-scm: 7.0.5
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.1
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
typing-extensions: 4.4.0
urllib3: 1.26.12
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.10.0
Change History (2)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Platform |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash getting text input from Save dialog? |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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