Opened 3 years ago

Closed 3 years ago

#8876 closed defect (can't reproduce)

Keyboard interrupt while rendering movie

Reported by: chimerax-bug-report@… Owned by: pett
Priority: normal Milestone:
Component: Input/Output Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description (last modified by pett) 

The following bug report has been submitted:
Platform:        Linux-5.4.0-146-generic-x86_64-with-debian-buster-sid
ChimeraX Version: 0.8 (2018-12-17)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
warning | 'clip' is a prefix of an existing command 'clipper'  
note | Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-  
packages/chimerax/core/toolshed/__init__.py", line 338, in __init__  
self.init_available_from_cache(logger)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-  
packages/chimerax/core/toolshed/__init__.py", line 445, in  
init_available_from_cache  
abc.load_from_cache()  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-  
packages/chimerax/core/toolshed/available.py", line 61, in load_from_cache  
b = _build_bundle(d)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-  
packages/chimerax/core/toolshed/available.py", line 242, in _build_bundle  
keywords = _extract_extra_keywords(keywords)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-  
packages/chimerax/core/toolshed/installed.py", line 270, in  
_extract_extra_keywords  
all_kwds = [k.strip() for k in kwds.split(',')]  
AttributeError: 'list' object has no attribute 'split'  
  
UCSF ChimeraX version: 0.8 (2018-12-17)  
How to cite UCSF ChimeraX  

> open ChimeraX-figure-v2.py

['7N9E:ELECTRON MICROSCOPY\n', '7N9F:ELECTRON MICROSCOPY\n', '7N9Q:ELECTRON
MICROSCOPY\n', '7N9R:ELECTRON MICROSCOPY\n', '7N9S:ELECTRON MICROSCOPY\n',
'7N9T:ELECTRON MICROSCOPY\n', '7N9W:ELECTRON MICROSCOPY\n', '7N9Y:ELECTRON
MICROSCOPY\n', '7N9Z:ELECTRON MICROSCOPY\n', '1NA4:ELECTRON MICROSCOPY\n',
'6NAV:ELECTRON MICROSCOPY\n', '7NA6:ELECTRON MICROSCOPY\n', '7NA7:ELECTRON
MICROSCOPY\n', '7NA8:ELECTRON MICROSCOPY\n', '7NAC:ELECTRON MICROSCOPY\n',
'7NAD:ELECTRON MICROSCOPY\n', '7NAF:ELECTRON MICROSCOPY\n', '7NAK:ELECTRON
MICROSCOPY\n', '7NAL:ELECTRON MICROSCOPY\n', '7NAN:ELECTRON MICROSCOPY\n',
'7NAO:ELECTRON MICROSCOPY\n', '7NAP:ELECTRON MICROSCOPY\n', '7NAQ:ELECTRON
MICROSCOPY\n', '7NAR:ELECTRON MICROSCOPY\n', '7NAS:ELECTRON MICROSCOPY\n',
'7NAT:ELECTRON MICROSCOPY\n', '7NAU:ELECTRON MICROSCOPY\n', '7NAV:ELECTRON
MICROSCOPY\n', '7NAX:ELECTRON MICROSCOPY\n', '3NB3:ELECTRON MICROSCOPY\n',
'5NBZ:ELECTRON MICROSCOPY\n', '6NB3:ELECTRON MICROSCOPY\n', '6NB4:ELECTRON
MICROSCOPY\n', '6NB6:ELECTRON MICROSCOPY\n', '6NB7:ELECTRON MICROSCOPY\n',
'6NBB:ELECTRON MICROSCOPY\n', '6NBC:ELECTRON MICROSCOPY\n', '6NBD:ELECTRON
MICROSCOPY\n', '6NBF:ELECTRON MICROSCOPY\n', '6NBH:ELECTRON MICROSCOPY\n',
'6NBI:ELECTRON MICROSCOPY\n', '6NBQ:ELECTRON MICROSCOPY\n', '6NBX:ELECTRON
MICROSCOPY\n', '6NBY:ELECTRON MICROSCOPY\n', '7NB6:ELECTRON MICROSCOPY\n',
'7NB8:ELECTRON MICROSCOPY\n', '7NBA:ELECTRON MICROSCOPY\n', '7NBN:ELECTRON
MICROSCOPY\n', '7NBU:ELECTRON MICROSCOPY\n', '7NBX:ELECTRON MICROSCOPY\n',
'5NCO:ELECTRON MICROSCOPY\n', '6NC2:ELECTRON MICROSCOPY\n', '6NC3:ELECTRON
MICROSCOPY\n', '6NCL:ELECTRON MICROSCOPY\n', '6NCV:ELECTRON MICROSCOPY\n',
'7NCA:ELECTRON MICROSCOPY\n', '7NCG:ELECTRON MICROSCOPY\n', '7NCH:ELECTRON
MICROSCOPY\n', '7NCI:ELECTRON MICROSCOPY\n', '7NCJ:ELECTRON MICROSCOPY\n',
'7NCK:ELECTRON MICROSCOPY\n', '7NCR:ELECTRON MICROSCOPY\n', '7NCS:ELECTRON
MICROSCOPY\n', '5ND1:ELECTRON MICROSCOPY\n', '5ND2:ELECTRON MICROSCOPY\n',
'5ND3:ELECTRON MICROSCOPY\n', '5ND4:ELECTRON MICROSCOPY\n', '5ND7:ELECTRON
MICROSCOPY\n', '5ND8:ELECTRON MICROSCOPY\n', '5ND9:ELECTRON MICROSCOPY\n',
'6ND0:ELECTRON MICROSCOPY\n', '6ND1:ELECTRON MICROSCOPY\n', '6ND4:ELECTRON
MICROSCOPY\n', '6NDY:ELECTRON MICROSCOPY\n', '7ND0:ELECTRON MICROSCOPY\n',
'7ND2:ELECTRON MICROSCOPY\n', '7ND3:ELECTRON MICROSCOPY\n', '7ND4:ELECTRON
MICROSCOPY\n', '7ND5:ELECTRON MICROSCOPY\n', '7ND6:ELECTRON MICROSCOPY\n',
'7ND7:ELECTRON MICROSCOPY\n', '7ND8:ELECTRON MICROSCOPY\n', '7ND9:ELECTRON
MICROSCOPY\n', '7NDA:ELECTRON MICROSCOPY\n', '7NDB:ELECTRON MICROSCOPY\n',
'7NDC:ELECTRON MICROSCOPY\n', '7NDD:ELECTRON MICROSCOPY\n', '7NDG:ELECTRON
MICROSCOPY\n', '5NED:ELECTRON MICROSCOPY\n', '5NEJ:ELECTRON MICROSCOPY\n',
'5NEM:ELECTRON MICROSCOPY\n', '5NER:ELECTRON MICROSCOPY\n', '5NET:ELECTRON
MICROSCOPY\n', '5NEU:ELECTRON MICROSCOPY\n', '6NE0:ELECTRON MICROSCOPY\n',
'6NE3:ELECTRON MICROSCOPY\n', '6NEF:ELECTRON MICROSCOPY\n', '6NEQ:ELECTRON
MICROSCOPY\n', '7NEP:ELECTRON MICROSCOPY\n', '7NEQ:ELECTRON MICROSCOPY\n',
'7NEZ:ELECTRON MICROSCOPY\n', '6NF2:ELECTRON MICROSCOPY\n', '6NF4:ELECTRON
MICROSCOPY\n', '6NF5:ELECTRON MICROSCOPY\n', '6NF6:ELECTRON MICROSCOPY\n',
'6NF8:ELECTRON MICROSCOPY\n', '6NF9:ELECTRON MICROSCOPY\n', '6NFC:ELECTRON
MICROSCOPY\n', '7NF6:ELECTRON MICROSCOPY\n', '7NF7:ELECTRON MICROSCOPY\n',
'7NF8:ELECTRON MICROSCOPY\n', '7NFC:ELECTRON MICROSCOPY\n', '7NFD:ELECTRON
MICROSCOPY\n', '7NFE:ELECTRON MICROSCOPY\n', '7NFX:ELECTRON MICROSCOPY\n',
'7NFY:ELECTRON MICROSCOPY\n', '5NG5:ELECTRON MICROSCOPY\n', '5NGM:ELECTRON
MICROSCOPY\n', '7NG4:ELECTRON MICROSCOPY\n', '7NG5:ELECTRON MICROSCOPY\n',
'7NG8:ELECTRON MICROSCOPY\n', '7NG9:ELECTRON MICROSCOPY\n', '7NGA:ELECTRON
MICROSCOPY\n', '7NGB:ELECTRON MICROSCOPY\n', '7NGC:ELECTRON MICROSCOPY\n',
'7NGF:ELECTRON MICROSCOPY\n', '7NGH:ELECTRON MICROSCOPY\n', '7NGL:ELECTRON
MICROSCOPY\n', '7NGP:ELECTRON MICROSCOPY\n', '7NGQ:ELECTRON MICROSCOPY\n',
'6NHJ:ELECTRON MICROSCOPY\n', '6NHT:ELECTRON MICROSCOPY\n', '6NHV:ELECTRON
MICROSCOPY\n', '7NH3:ELECTRON MICROSCOPY\n', '7NH9:ELECTRON MICROSCOPY\n',
'7NHA:ELECTRON MICROSCOPY\n', '7NHC:ELECTRON MICROSCOPY\n', '7NHK:ELECTRON
MICROSCOPY\n', '7NHL:ELECTRON MICROSCOPY\n', '7NHM:ELECTRON MICROSCOPY\n',
'7NHN:ELECTRON MICROSCOPY\n', '7NHO:ELECTRON MICROSCOPY\n', '7NHP:ELECTRON
MICROSCOPY\n', '7NHQ:ELECTRON MICROSCOPY\n', '7NHR:ELECTRON MICROSCOPY\n',
'7NHS:ELECTRON MICROSCOPY\n', '7NHT:ELECTRON MICROSCOPY\n', '7NHX:ELECTRON
MICROSCOPY\n', '5NI1:ELECTRON MICROSCOPY\n', '5NIK:ELECTRON MICROSCOPY\n',
'5NIL:ELECTRON MICROSCOPY\n', '6NI2:ELECTRON MICROSCOPY\n', '6NI3:ELECTRON
MICROSCOPY\n', '6NIJ:ELECTRON MICROSCOPY\n', '6NIL:ELECTRON MICROSCOPY\n',
'6NIY:ELECTRON MICROSCOPY\n', '7NI0:ELECTRON MICROSCOPY\n', '7NI2:ELECTRON
MICROSCOPY\n', '7NI4:ELECTRON MICROSCOPY\n', '7NI5:ELECTRON MICROSCOPY\n',
'7NI6:ELECTRON MICROSCOPY\n', '7NIB:ELECTRON MICROSCOPY\n', '7NIC:ELECTRON
MICROSCOPY\n', '7NIE:ELECTRON MICROSCOPY\n', '7NIH:ELECTRON MICROSCOPY\n',
'7NII:ELECTRON MICROSCOPY\n', '7NIK:ELECTRON MICROSCOPY\n', '7NIL:ELECTRON
MICROSCOPY\n', '7NIQ:ELECTRON MICROSCOPY\n', '7NIR:ELECTRON MICROSCOPY\n',
'7NIS:ELECTRON MICROSCOPY\n', '7NIU:ELECTRON MICROSCOPY\n', '7NIV:ELECTRON
MICROSCOPY\n', '7NIW:ELECTRON MICROSCOPY\n', '5NJ3:ELECTRON MICROSCOPY\n',
'5NJG:ELECTRON MICROSCOPY\n', '5NJT:ELECTRON MICROSCOPY\n', '6NJ8:ELECTRON
MICROSCOPY\n', '6NJ9:ELECTRON MICROSCOPY\n', '6NJL:ELECTRON MICROSCOPY\n',
'6NJM:ELECTRON MICROSCOPY\n', '6NJN:ELECTRON MICROSCOPY\n', '6NJO:ELECTRON
MICROSCOPY\n', '6NJP:ELECTRON MICROSCOPY\n', '7NJ0:ELECTRON MICROSCOPY\n',
'7NJ1:ELECTRON MICROSCOPY\n', '7NJ3:ELECTRON MICROSCOPY\n', '7NJ4:ELECTRON
MICROSCOPY\n', '7NJ5:ELECTRON MICROSCOPY\n', '7NJ7:ELECTRON MICROSCOPY\n',
'7NJK:ELECTRON MICROSCOPY\n', '7NJL:ELECTRON MICROSCOPY\n', '7NJM:ELECTRON
MICROSCOPY\n', '7NJN:ELECTRON MICROSCOPY\n', '7NJO:ELECTRON MICROSCOPY\n',
'7NJP:ELECTRON MICROSCOPY\n', '7NJQ:ELECTRON MICROSCOPY\n', '7NJR:ELECTRON
MICROSCOPY\n', '7NJS:ELECTRON MICROSCOPY\n', '7NJT:ELECTRON MICROSCOPY\n',
'7NJU:ELECTRON MICROSCOPY\n', '7NJV:ELECTRON MICROSCOPY\n', '7NJW:ELECTRON
MICROSCOPY\n', '7NJX:ELECTRON MICROSCOPY\n', '7NJY:ELECTRON MICROSCOPY\n',
'6NK5:ELECTRON MICROSCOPY\n', '6NK6:ELECTRON MICROSCOPY\n', '6NK7:ELECTRON
MICROSCOPY\n', '7NK1:ELECTRON MICROSCOPY\n', '7NK2:ELECTRON MICROSCOPY\n',
'7NK4:ELECTRON MICROSCOPY\n', '7NK6:ELECTRON MICROSCOPY\n', '7NK7:ELECTRON
MICROSCOPY\n', '7NK8:ELECTRON MICROSCOPY\n', '7NK9:ELECTRON MICROSCOPY\n',
'7NKA:ELECTRON MICROSCOPY\n', '7NKB:ELECTRON MICROSCOPY\n', '7NKC:ELECTRON
MICROSCOPY\n', '7NKD:ELECTRON MICROSCOPY\n', '7NKH:ELECTRON MICROSCOPY\n',
'7NKI:ELECTRON MICROSCOPY\n', '7NKJ:ELECTRON MICROSCOPY\n', '7NKK:ELECTRON
MICROSCOPY\n', '7NKL:ELECTRON MICROSCOPY\n', '7NKN:ELECTRON MICROSCOPY\n',
'7NKP:ELECTRON MICROSCOPY\n', '7NKQ:ELECTRON MICROSCOPY\n', '7NKR:ELECTRON
MICROSCOPY\n', '7NKU:ELECTRON MICROSCOPY\n', '7NKX:ELECTRON MICROSCOPY\n',
'7NKY:ELECTRON MICROSCOPY\n', '7NKZ:ELECTRON MICROSCOPY\n', '5NL2:ELECTRON
MICROSCOPY\n', '7NL0:ELECTRON MICROSCOPY\n', '7NL9:ELECTRON MICROSCOPY\n',
'7NLL:ELECTRON MICROSCOPY\n', '5NMS:ELECTRON MICROSCOPY\n', '6NM5:ELECTRON
MICROSCOPY\n', '6NM9:ELECTRON MICROSCOPY\n', '6NMA:ELECTRON MICROSCOPY\n',
'6NMC:ELECTRON MICROSCOPY\n', '6NMD:ELECTRON MICROSCOPY\n', '6NME:ELECTRON
MICROSCOPY\n', '6NMI:ELECTRON MICROSCOPY\n', '7NMN:ELECTRON MICROSCOPY\n',
'1NN8:ELECTRON MICROSCOPY\n', '6NN3:ELECTRON MICROSCOPY\n', '6NN6:ELECTRON
MICROSCOPY\n', '7NNH:ELECTRON MICROSCOPY\n', '7NNL:ELECTRON MICROSCOPY\n',
'7NNP:ELECTRON MICROSCOPY\n', '7NNT:ELECTRON MICROSCOPY\n', '7NNU:ELECTRON
MICROSCOPY\n', '2NOQ:ELECTRON MICROSCOPY\n', '5NO2:ELECTRON MICROSCOPY\n',
'5NO3:ELECTRON MICROSCOPY\n', '5NO4:ELECTRON MICROSCOPY\n', '5NOG:ELECTRON
MICROSCOPY\n', '5NOJ:ELECTRON MICROSCOPY\n', '5NOL:ELECTRON MICROSCOPY\n',
'6NOG:ELECTRON MICROSCOPY\n', '7NO0:ELECTRON MICROSCOPY\n', '7NO1:ELECTRON
MICROSCOPY\n', '7NO2:ELECTRON MICROSCOPY\n', '7NO3:ELECTRON MICROSCOPY\n',
'7NO4:ELECTRON MICROSCOPY\n', '7NO5:ELECTRON MICROSCOPY\n', '7NO6:ELECTRON
MICROSCOPY\n', '7NO7:ELECTRON MICROSCOPY\n', '7NO8:ELECTRON MICROSCOPY\n',
'7NO9:ELECTRON MICROSCOPY\n', '7NOA:ELECTRON MICROSCOPY\n', '7NOB:ELECTRON
MICROSCOPY\n', '7NOC:ELECTRON MICROSCOPY\n', '7NOD:ELECTRON MICROSCOPY\n',
'7NOE:ELECTRON MICROSCOPY\n', '7NOF:ELECTRON MICROSCOPY\n', '7NOG:ELECTRON
MICROSCOPY\n', '7NOH:ELECTRON MICROSCOPY\n', '7NOI:ELECTRON MICROSCOPY\n',
'7NOJ:ELECTRON MICROSCOPY\n', '7NOK:ELECTRON MICROSCOPY\n', '7NOL:ELECTRON
MICROSCOPY\n', '7NOM:ELECTRON MICROSCOPY\n', '7NON:ELECTRON MICROSCOPY\n',
'7NOO:ELECTRON MICROSCOPY\n', '7NOP:ELECTRON MICROSCOPY\n', '7NOQ:ELECTRON
MICROSCOPY\n', '5NP0:ELECTRON MICROSCOPY\n', '5NP1:ELECTRON MICROSCOPY\n',
'5NP6:ELECTRON MICROSCOPY\n', '5NP7:ELECTRON MICROSCOPY\n', '6NP0:ELECTRON
MICROSCOPY\n', '6NPH:ELECTRON MICROSCOPY\n', '6NPJ:ELECTRON MICROSCOPY\n',
'6NPK:ELECTRON MICROSCOPY\n', '6NPL:ELECTRON MICROSCOPY\n', '6NPY:ELECTRON
MICROSCOPY\n', '7NP3:ELECTRON MICROSCOPY\n', '7NP4:ELECTRON MICROSCOPY\n',
'7NP7:ELECTRON MICROSCOPY\n', '7NPF:ELECTRON MICROSCOPY\n', '7NPN:ELECTRON
MICROSCOPY\n', '7NPR:ELECTRON MICROSCOPY\n', '7NPS:ELECTRON MICROSCOPY\n',
'7NPT:ELECTRON MICROSCOPY\n', '7NPU:ELECTRON MICROSCOPY\n', '7NPV:ELECTRON
MICROSCOPY\n', '7NPW:ELECTRON MICROSCOPY\n', '6NQ0:ELECTRON MICROSCOPY\n',
'6NQ1:ELECTRON MICROSCOPY\n', '6NQ2:ELECTRON MICROSCOPY\n', '6NQA:ELECTRON
MICROSCOPY\n', '6NQB:ELECTRON MICROSCOPY\n', '6NQD:ELECTRON MICROSCOPY\n',
'7NQH:ELECTRON MICROSCOPY\n', '7NQK:ELECTRON MICROSCOPY\n', '7NQL:ELECTRON
MICROSCOPY\n', '5NRL:ELECTRON MICROSCOPY\n', '6NR2:ELECTRON MICROSCOPY\n',
'6NR3:ELECTRON MICROSCOPY\n', '6NR4:ELECTRON MICROSCOPY\n', '6NR8:ELECTRON
MICROSCOPY\n', '6NR9:ELECTRON MICROSCOPY\n', '6NRA:ELECTRON MICROSCOPY\n',
'6NRB:ELECTRON MICROSCOPY\n', '6NRC:ELECTRON MICROSCOPY\n', '6NRD:ELECTRON
MICROSCOPY\n', '6NRV:ELECTRON MICROSCOPY\n', '7NRC:ELECTRON MICROSCOPY\n',
'7NRD:ELECTRON MICROSCOPY\n', '7NRH:ELECTRON MICROSCOPY\n', '7NRI:ELECTRON
MICROSCOPY\n', '7NRQ:ELECTRON MICROSCOPY\n', '7NRS:ELECTRON MICROSCOPY\n',
'7NRT:ELECTRON MICROSCOPY\n', '7NRV:ELECTRON MICROSCOPY\n', '7NRX:ELECTRON
MICROSCOPY\n', '2NSU:ELECTRON MICROSCOPY\n', '5NSR:ELECTRON MICROSCOPY\n',
'5NSS:ELECTRON MICROSCOPY\n', '6NSJ:ELECTRON MICROSCOPY\n', '6NSK:ELECTRON
MICROSCOPY\n', '7NS0:ELECTRON MICROSCOPY\n', '7NS2:ELECTRON MICROSCOPY\n',
'7NS3:ELECTRON MICROSCOPY\n', '7NS4:ELECTRON MICROSCOPY\n', '7NS6:ELECTRON
MICROSCOPY\n', '7NSB:ELECTRON MICROSCOPY\n', '7NSC:ELECTRON MICROSCOPY\n',
'7NSG:ELECTRON MICROSCOPY\n', '7NSH:ELECTRON MICROSCOPY\n', '7NSI:ELECTRON
MICROSCOPY\n', '7NSJ:ELECTRON MICROSCOPY\n', '7NSL:ELECTRON MICROSCOPY\n',
'7NSO:ELECTRON MICROSCOPY\n', '7NSP:ELECTRON MICROSCOPY\n', '7NSQ:ELECTRON
MICROSCOPY\n', '7NST:ELECTRON MICROSCOPY\n', '7NSU:ELECTRON MICROSCOPY\n',
'6NT3:ELECTRON MICROSCOPY\n', '6NT4:ELECTRON MICROSCOPY\n', '6NT5:ELECTRON
MICROSCOPY\n', '6NT6:ELECTRON MICROSCOPY\n', '6NT7:ELECTRON MICROSCOPY\n',
'6NT8:ELECTRON MICROSCOPY\n', '6NT9:ELECTRON MICROSCOPY\n', '6NTS:ELECTRON
MICROSCOPY\n', '7NT5:ELECTRON MICROSCOPY\n', '7NT6:ELECTRON MICROSCOPY\n',
'7NT9:ELECTRON MICROSCOPY\n', '7NTA:ELECTRON MICROSCOPY\n', '7NTC:ELECTRON
MICROSCOPY\n', '7NTF:ELECTRON MICROSCOPY\n', '7NTM:ELECTRON MICROSCOPY\n',
'7NTX:ELECTRON MICROSCOPY\n', '5NUG:ELECTRON MICROSCOPY\n', '6NU2:ELECTRON
MICROSCOPY\n', '6NU3:ELECTRON MICROSCOPY\n', '6NUD:ELECTRON MICROSCOPY\n',
'6NUE:ELECTRON MICROSCOPY\n', '6NUR:ELECTRON MICROSCOPY\n', '6NUS:ELECTRON
MICROSCOPY\n', '6NUT:ELECTRON MICROSCOPY\n', '6NUW:ELECTRON MICROSCOPY\n',
'7NUL:ELECTRON MICROSCOPY\n', '7NUM:ELECTRON MICROSCOPY\n', '7NUN:ELECTRON
MICROSCOPY\n', '7NUO:ELECTRON MICROSCOPY\n', '7NUQ:ELECTRON MICROSCOPY\n',
'7NUR:ELECTRON MICROSCOPY\n', '5NV3:ELECTRON MICROSCOPY\n', '5NVS:ELECTRON
MICROSCOPY\n', '5NVU:ELECTRON MICROSCOPY\n', '7NV0:ELECTRON MICROSCOPY\n',
'7NV1:ELECTRON MICROSCOPY\n', '7NVG:ELECTRON MICROSCOPY\n', '7NVH:ELECTRON
MICROSCOPY\n', '7NVL:ELECTRON MICROSCOPY\n', '7NVM:ELECTRON MICROSCOPY\n',
'7NVN:ELECTRON MICROSCOPY\n', '7NVO:ELECTRON MICROSCOPY\n', '7NVR:ELECTRON
MICROSCOPY\n', '7NVS:ELECTRON MICROSCOPY\n', '7NVT:ELECTRON MICROSCOPY\n',
'7NVU:ELECTRON MICROSCOPY\n', '7NVV:ELECTRON MICROSCOPY\n', '7NVW:ELECTRON
MICROSCOPY\n', '7NVX:ELECTRON MICROSCOPY\n', '7NVY:ELECTRON MICROSCOPY\n',
'7NVZ:ELECTRON MICROSCOPY\n', '5NW4:ELECTRON MICROSCOPY\n', '5NWY:ELECTRON
MICROSCOPY\n', '6NWA:ELECTRON MICROSCOPY\n', '6NWP:ELECTRON MICROSCOPY\n',
'6NWQ:ELECTRON MICROSCOPY\n', '7NW0:ELECTRON MICROSCOPY\n', '7NWG:ELECTRON
MICROSCOPY\n', '7NWH:ELECTRON MICROSCOPY\n', '7NWI:ELECTRON MICROSCOPY\n',
'7NWL:ELECTRON MICROSCOPY\n', '7NWT:ELECTRON MICROSCOPY\n', '7NWW:ELECTRON
MICROSCOPY\n', '6NXE:ELECTRON MICROSCOPY\n', '7NXD:ELECTRON MICROSCOPY\n',
'7NXF:ELECTRON MICROSCOPY\n', '6NY1:ELECTRON MICROSCOPY\n', '6NY2:ELECTRON
MICROSCOPY\n', '6NY3:ELECTRON MICROSCOPY\n', '6NYB:ELECTRON MICROSCOPY\n',
'6NYF:ELECTRON MICROSCOPY\n', '6NYG:ELECTRON MICROSCOPY\n', '6NYJ:ELECTRON
MICROSCOPY\n', '6NYL:ELECTRON MICROSCOPY\n', '6NYM:ELECTRON MICROSCOPY\n',
'6NYN:ELECTRON MICROSCOPY\n', '6NYY:ELECTRON MICROSCOPY\n', '7NY1:ELECTRON
MICROSCOPY\n', '7NY5:ELECTRON MICROSCOPY\n', '7NYC:ELECTRON MICROSCOPY\n',
'7NYD:ELECTRON MICROSCOPY\n', '7NYH:ELECTRON MICROSCOPY\n', '7NYR:ELECTRON
MICROSCOPY\n', '7NYU:ELECTRON MICROSCOPY\n', '7NYV:ELECTRON MICROSCOPY\n',
'7NYW:ELECTRON MICROSCOPY\n', '7NYX:ELECTRON MICROSCOPY\n', '7NYY:ELECTRON
MICROSCOPY\n', '7NYZ:ELECTRON MICROSCOPY\n', '5NZR:ELECTRON MICROSCOPY\n',
'5NZS:ELECTRON MICROSCOPY\n', '5NZT:ELECTRON MICROSCOPY\n', '5NZU:ELECTRON
MICROSCOPY\n', '5NZV:ELECTRON MICROSCOPY\n', '6NZ0:ELECTRON MICROSCOPY\n',
'6NZD:ELECTRON MICROSCOPY\n', '6NZK:ELECTRON MICROSCOPY\n', '6NZO:ELECTRON
MICROSCOPY\n', '6NZU:ELECTRON MICROSCOPY\n', '6NZW:ELECTRON MICROSCOPY\n',
'6NZZ:ELECTRON MICROSCOPY\n', '7NZ0:ELECTRON MICROSCOPY\n', '7NZ1:ELECTRON
MICROSCOPY\n', '7NZ2:ELECTRON MICROSCOPY\n', '7NZ3:ELECTRON MICROSCOPY\n',
'7NZ4:ELECTRON MICROSCOPY\n', '7NZM:ELECTRON MICROSCOPY\n', '2O0F:ELECTRON
MICROSCOPY\n', '5O09:ELECTRON MICROSCOPY\n', '6O00:ELECTRON MICROSCOPY\n',
'6O06:ELECTRON MICROSCOPY\n', '6O0H:ELECTRON MICROSCOPY\n', '6O0X:ELECTRON
MICROSCOPY\n', '6O0Y:ELECTRON MICROSCOPY\n', '6O0Z:ELECTRON MICROSCOPY\n',
'7O01:ELECTRON MICROSCOPY\n', '7O0I:ELECTRON MICROSCOPY\n', '7O0U:ELECTRON
MICROSCOPY\n', '7O0V:ELECTRON MICROSCOPY\n', '7O0W:ELECTRON MICROSCOPY\n',
'7O0X:ELECTRON MICROSCOPY\n', '7O0Y:ELECTRON MICROSCOPY\n', '7O0Z:ELECTRON
MICROSCOPY\n', '1O18:ELECTRON MICROSCOPY\n', '1O19:ELECTRON MICROSCOPY\n',
'1O1A:ELECTRON MICROSCOPY\n', '1O1B:ELECTRON MICROSCOPY\n', '1O1C:ELECTRON
MICROSCOPY\n', '1O1D:ELECTRON MICROSCOPY\n', '1O1E:ELECTRON MICROSCOPY\n',
'1O1F:ELECTRON MICROSCOPY\n', '1O1G:ELECTRON MICROSCOPY\n', '6O1D:ELECTRON
MICROSCOPY\n', '6O1K:ELECTRON MICROSCOPY\n', '6O1L:ELECTRON MICROSCOPY\n',
'6O1M:ELECTRON MICROSCOPY\n', '6O1N:ELECTRON MICROSCOPY\n', '6O1O:ELECTRON
MICROSCOPY\n', '6O1P:ELECTRON MICROSCOPY\n', '6O1U:ELECTRON MICROSCOPY\n',
'6O1V:ELECTRON MICROSCOPY\n', '7O10:ELECTRON MICROSCOPY\n', '7O11:ELECTRON
MICROSCOPY\n', '7O12:ELECTRON MICROSCOPY\n', '7O13:ELECTRON MICROSCOPY\n',
'7O14:ELECTRON MICROSCOPY\n', '7O15:ELECTRON MICROSCOPY\n', '7O16:ELECTRON
MICROSCOPY\n', '7O17:ELECTRON MICROSCOPY\n', '7O19:ELECTRON MICROSCOPY\n',
'7O1A:ELECTRON MICROSCOPY\n', '7O1C:ELECTRON MICROSCOPY\n', '7O1Q:ELECTRON
MICROSCOPY\n', '7O1V:ELECTRON MICROSCOPY\n', '5O2R:ELECTRON MICROSCOPY\n',
'6O20:ELECTRON MICROSCOPY\n', '6O2M:ELECTRON MICROSCOPY\n', '6O2N:ELECTRON
MICROSCOPY\n', '6O2O:ELECTRON MICROSCOPY\n', '6O2P:ELECTRON MICROSCOPY\n',
'6O2Q:ELECTRON MICROSCOPY\n', '6O2R:ELECTRON MICROSCOPY\n', '6O2S:ELECTRON
MICROSCOPY\n', '6O2T:ELECTRON MICROSCOPY\n', '7O24:ELECTRON MICROSCOPY\n',
'7O2W:ELECTRON MICROSCOPY\n', '5O31:ELECTRON MICROSCOPY\n', '5O3L:ELECTRON
MICROSCOPY\n', '5O3O:ELECTRON MICROSCOPY\n', '5O3T:ELECTRON MICROSCOPY\n',
'6O3H:ELECTRON MICROSCOPY\n', '7O37:ELECTRON MICROSCOPY\n', '7O3C:ELECTRON
MICROSCOPY\n', '7O3D:ELECTRON MICROSCOPY\n', '7O3E:ELECTRON MICROSCOPY\n',
'7O3H:ELECTRON MICROSCOPY\n', '7O3J:ELECTRON MICROSCOPY\n', '7O3T:ELECTRON
MICROSCOPY\n', '7O3V:ELECTRON MICROSCOPY\n', '7O3W:ELECTRON MICROSCOPY\n',
'7O3X:ELECTRON MICROSCOPY\n', '7O3Y:ELECTRON MICROSCOPY\n', '7O3Z:ELECTRON
MICROSCOPY\n', '5O4U:ELECTRON MICROSCOPY\n', '7O40:ELECTRON MICROSCOPY\n',
'7O41:ELECTRON MICROSCOPY\n', '7O42:ELECTRON MICROSCOPY\n', '7O43:ELECTRON
MICROSCOPY\n', '7O4H:ELECTRON MICROSCOPY\n', '7O4I:ELECTRON MICROSCOPY\n',
'7O4J:ELECTRON MICROSCOPY\n', '7O4K:ELECTRON MICROSCOPY\n', '7O4L:ELECTRON
MICROSCOPY\n', '5O5B:ELECTRON MICROSCOPY\n', '5O5J:ELECTRON MICROSCOPY\n',
'5O5P:ELECTRON MICROSCOPY\n', '6O58:ELECTRON MICROSCOPY\n', '6O5B:ELECTRON
MICROSCOPY\n', '7O5B:ELECTRON MICROSCOPY\n', '7O5H:ELECTRON MICROSCOPY\n',
'5O60:ELECTRON MICROSCOPY\n', '5O61:ELECTRON MICROSCOPY\n', '5O66:ELECTRON
MICROSCOPY\n', '5O6A:ELECTRON MICROSCOPY\n', '5O6V:ELECTRON MICROSCOPY\n',
'6O6A:ELECTRON MICROSCOPY\n', '6O6B:ELECTRON MICROSCOPY\n', '6O6C:ELECTRON
MICROSCOPY\n', '6O6R:ELECTRON MICROSCOPY\n', '7O6B:ELECTRON MICROSCOPY\n',
'7O6E:ELECTRON MICROSCOPY\n', '7O6P:ELECTRON MICROSCOPY\n', '7O6Q:ELECTRON
MICROSCOPY\n', '7O6Y:ELECTRON MICROSCOPY\n', '6O72:ELECTRON MICROSCOPY\n',
'6O77:ELECTRON MICROSCOPY\n', '6O7E:ELECTRON MICROSCOPY\n', '6O7H:ELECTRON
MICROSCOPY\n', '6O7I:ELECTRON MICROSCOPY\n', '6O7K:ELECTRON MICROSCOPY\n',
'6O7T:ELECTRON MICROSCOPY\n', '6O7U:ELECTRON MICROSCOPY\n', '6O7V:ELECTRON
MICROSCOPY\n', '6O7W:ELECTRON MICROSCOPY\n', '6O7X:ELECTRON MICROSCOPY\n',
'7O71:ELECTRON MICROSCOPY\n', '7O72:ELECTRON MICROSCOPY\n', '7O73:ELECTRON
MICROSCOPY\n', '7O75:ELECTRON MICROSCOPY\n', '7O7F:ELECTRON MICROSCOPY\n',
'7O7L:ELECTRON MICROSCOPY\n', '7O7M:ELECTRON MICROSCOPY\n', '7O7N:ELECTRON
MICROSCOPY\n', '7O7O:ELECTRON MICROSCOPY\n', '7O7P:ELECTRON MICROSCOPY\n',
'7O7Q:ELECTRON MICROSCOPY\n', '7O7R:ELECTRON MICROSCOPY\n', '7O7S:ELECTRON
MICROSCOPY\n', '7O7Y:ELECTRON MICROSCOPY\n', '7O7Z:ELECTRON MICROSCOPY\n',
'5O8O:ELECTRON MICROSCOPY\n', '6O81:ELECTRON MICROSCOPY\n', '6O84:ELECTRON
MICROSCOPY\n', '6O85:ELECTRON MICROSCOPY\n', '6O8W:ELECTRON MICROSCOPY\n',
'6O8X:ELECTRON MICROSCOPY\n', '6O8Y:ELECTRON MICROSCOPY\n', '6O8Z:ELECTRON
MICROSCOPY\n', '7O80:ELECTRON MICROSCOPY\n', '7O81:ELECTRON MICROSCOPY\n',
'7O85:ELECTRON MICROSCOPY\n', '5O9G:ELECTRON MICROSCOPY\n', '5O9Z:ELECTRON
MICROSCOPY\n', '6O90:ELECTRON MICROSCOPY\n', '6O96:ELECTRON MICROSCOPY\n',
'6O9G:ELECTRON MICROSCOPY\n', '6O9J:ELECTRON MICROSCOPY\n', '6O9K:ELECTRON
MICROSCOPY\n', '6O9L:ELECTRON MICROSCOPY\n', '6O9M:ELECTRON MICROSCOPY\n',
'6O9R:ELECTRON MICROSCOPY\n', '6O9Z:ELECTRON MICROSCOPY\n', '7O9K:ELECTRON
MICROSCOPY\n', '7O9M:ELECTRON MICROSCOPY\n', '7O9W:ELECTRON MICROSCOPY\n',
'5OA1:ELECTRON MICROSCOPY\n', '5OA3:ELECTRON MICROSCOPY\n', '5OAC:ELECTRON
MICROSCOPY\n', '5OAF:ELECTRON MICROSCOPY\n', '5OAM:ELECTRON MICROSCOPY\n',
'6OA9:ELECTRON MICROSCOPY\n', '6OAA:ELECTRON MICROSCOPY\n', '6OAB:ELECTRON
MICROSCOPY\n', '6OAS:ELECTRON MICROSCOPY\n', '6OAX:ELECTRON MICROSCOPY\n',
'6OAY:ELECTRON MICROSCOPY\n', '7OA6:ELECTRON MICROSCOPY\n', '7OAE:ELECTRON
MICROSCOPY\n', '7OAG:ELECTRON MICROSCOPY\n', '7OAN:ELECTRON MICROSCOPY\n',
'2OB7:ELECTRON MICROSCOPY\n', '6OBJ:ELECTRON MICROSCOPY\n', '7OB4:ELECTRON
MICROSCOPY\n', '7OB9:ELECTRON MICROSCOPY\n', '7OBA:ELECTRON MICROSCOPY\n',
'7OBB:ELECTRON MICROSCOPY\n', '7OBQ:ELECTRON MICROSCOPY\n', '7OBR:ELECTRON
MICROSCOPY\n', '5OCU:ELECTRON MICROSCOPY\n', '6OCE:ELECTRON MICROSCOPY\n',
'7OCA:ELECTRON MICROSCOPY\n', '7OCC:ELECTRON MICROSCOPY\n', '7OCD:ELECTRON
MICROSCOPY\n', '7OCE:ELECTRON MICROSCOPY\n', '7OCF:ELECTRON MICROSCOPY\n',
'7OCH:ELECTRON MICROSCOPY\n', '7OCI:ELECTRON MICROSCOPY\n', '7OCK:ELECTRON
MICROSCOPY\n', '7OCO:ELECTRON MICROSCOPY\n', '7OCW:ELECTRON MICROSCOPY\n',
'7OCY:ELECTRON MICROSCOPY\n', '5ODV:ELECTRON MICROSCOPY\n', '6OD7:ELECTRON
MICROSCOPY\n', '6ODF:ELECTRON MICROSCOPY\n', '6ODI:ELECTRON MICROSCOPY\n',
'6ODJ:ELECTRON MICROSCOPY\n', '6ODM:ELECTRON MICROSCOPY\n', '6ODY:ELECTRON
MICROSCOPY\n', '7OD3:ELECTRON MICROSCOPY\n', '7OD4:ELECTRON MICROSCOPY\n',
'7OD6:ELECTRON MICROSCOPY\n', '7OD7:ELECTRON MICROSCOPY\n', '7OD8:ELECTRON
MICROSCOPY\n', '7ODE:ELECTRON MICROSCOPY\n', '7ODF:ELECTRON MICROSCOPY\n',
'7ODL:ELECTRON MICROSCOPY\n', '7ODR:ELECTRON MICROSCOPY\n', '7ODS:ELECTRON
MICROSCOPY\n', '7ODT:ELECTRON MICROSCOPY\n', '7ODW:ELECTRON MICROSCOPY\n',
'1OED:ELECTRON MICROSCOPY\n', '5OEJ:ELECTRON MICROSCOPY\n', '6OEE:ELECTRON
MICROSCOPY\n', '6OEF:ELECTRON MICROSCOPY\n', '6OEG:ELECTRON MICROSCOPY\n',
'6OEH:ELECTRON MICROSCOPY\n', '6OEM:ELECTRON MICROSCOPY\n', '6OEN:ELECTRON
MICROSCOPY\n', '6OEO:ELECTRON MICROSCOPY\n', '6OEP:ELECTRON MICROSCOPY\n',
'6OEQ:ELECTRON MICROSCOPY\n', '6OER:ELECTRON MICROSCOPY\n', '6OES:ELECTRON
MICROSCOPY\n', '6OET:ELECTRON MICROSCOPY\n', '6OEU:ELECTRON MICROSCOPY\n',
'6OEV:ELECTRON MICROSCOPY\n', '7OE0:ELECTRON MICROSCOPY\n', '7OE1:ELECTRON
MICROSCOPY\n', '7OE2:ELECTRON MICROSCOPY\n', '7OE3:ELECTRON MICROSCOPY\n',
'7OE7:ELECTRON MICROSCOPY\n', '7OEA:ELECTRON MICROSCOPY\n', '7OEB:ELECTRON
MICROSCOPY\n', '7OEN:ELECTRON MICROSCOPY\n', '7OEU:ELECTRON MICROSCOPY\n',
'7OEV:ELECTRON MICROSCOPY\n', '7OEW:ELECTRON MICROSCOPY\n', '2OF6:ELECTRON
MICROSCOPY\n', '5OF4:ELECTRON MICROSCOPY\n', '5OFO:ELECTRON MICROSCOPY\n',
'6OF2:ELECTRON MICROSCOPY\n', '6OF3:ELECTRON MICROSCOPY\n', '6OF4:ELECTRON
MICROSCOPY\n', '6OFE:ELECTRON MICROSCOPY\n', '6OFF:ELECTRON MICROSCOPY\n',
'6OFG:ELECTRON MICROSCOPY\n', '6OFH:ELECTRON MICROSCOPY\n', '6OFJ:ELECTRON
MICROSCOPY\n', '6OFX:ELECTRON MICROSCOPY\n', '7OF0:ELECTRON MICROSCOPY\n',
'7OF1:ELECTRON MICROSCOPY\n', '7OF2:ELECTRON MICROSCOPY\n', '7OF3:ELECTRON
MICROSCOPY\n', '7OF4:ELECTRON MICROSCOPY\n', '7OF5:ELECTRON MICROSCOPY\n',
'7OF6:ELECTRON MICROSCOPY\n', '7OF7:ELECTRON MICROSCOPY\n', '7OFH:ELECTRON
MICROSCOPY\n', '7OFQ:ELECTRON MICROSCOPY\n', '5OG1:ELECTRON MICROSCOPY\n',
'5OGC:ELECTRON MICROSCOPY\n', '5OGW:ELECTRON MICROSCOPY\n', '6OG1:ELECTRON
MICROSCOPY\n', '6OG2:ELECTRON MICROSCOPY\n', '6OG3:ELECTRON MICROSCOPY\n',
'6OG7:ELECTRON MICROSCOPY\n', '6OGD:ELECTRON MICROSCOPY\n', '6OGE:ELECTRON
MICROSCOPY\n', '6OGF:ELECTRON MICROSCOPY\n', '6OGG:ELECTRON MICROSCOPY\n',
'6OGI:ELECTRON MICROSCOPY\n', '6OGY:ELECTRON MICROSCOPY\n', '6OGZ:ELECTRON
MICROSCOPY\n', '7OG4:ELECTRON MICROSCOPY\n', '7OG5:ELECTRON MICROSCOPY\n',
'7OG6:ELECTRON MICROSCOPY\n', '7OGK:ELECTRON MICROSCOPY\n', '7OGL:ELECTRON

[deleted to fit within ticket limits]

> set bgColor white

> hide solvent

> lighting soft

> set silhouettes true

> color selAtoms byhetero

> rainbow chains palette paired-10

> select ligand

Nothing selected  

> style sel sphere

Changed 0 atom style  

> select clear

> color ligand & C pink

> movie record supersample 4

> turn y 1 360

> wait 360

> movie encode /home/pawan/Documents/ComPath-
DataDownload/PDBAPI/Structure_gif_chimeraX/2o0f.mp4

Movie saved to /home/pawan/.../Structure_gif_chimeraX/2o0f.mp4  
  

> close

../Compath_db/PDB_downlaod_rsync/mmCIF/o0/5o09.cif.gz  

> open ../Compath_db/PDB_downlaod_rsync/mmCIF/o0/5o09.cif.gz

5o09.cif title:  
BtubABC mini microtubule [more info...]  
  
Chain information for 5o09.cif #1  
---  
Chain | Description  
1A 2A 3A 4A 5A 6A 7A 8A | Tubulin  
1B 2B 3B 4B 5B 6B 7B 8B | Tubulin BtubB  
1C 2C 3C 4C 5C 6C 7C 8C | Bacterial kinesin light chain  
  

> set bgColor white

> hide solvent

> lighting soft

> set silhouettes true

> color selAtoms byhetero

> rainbow chains palette paired-10

> select ligand

448 atoms, 480 bonds selected  

> style sel sphere

Changed 448 atom styles  

> select clear

> color ligand & C pink

> movie record supersample 4

> turn y 1 360

> wait 360

> movie encode /home/pawan/Documents/ComPath-
DataDownload/PDBAPI/Structure_gif_chimeraX/5o09.mp4

Movie saved to /home/pawan/.../Structure_gif_chimeraX/5o09.mp4  
  

> close

../Compath_db/PDB_downlaod_rsync/mmCIF/o0/6o00.cif.gz  

> open ../Compath_db/PDB_downlaod_rsync/mmCIF/o0/6o00.cif.gz

6o00.cif title:  
apo-LRRC8A in MSP2N2 nanodisc constricted state [more info...]  
  
Chain information for 6o00.cif #1  
---  
Chain | Description  
A B C D E F | Volume-regulated anion channel subunit LRRC8A  
  

> set bgColor white

> hide solvent

> lighting soft

> set silhouettes true

> color selAtoms byhetero

> rainbow chains palette paired-10

> select ligand

Nothing selected  

> style sel sphere

Changed 0 atom style  

> select clear

> color ligand & C pink

> movie record supersample 4

> turn y 1 360

> wait 360

> movie encode /home/pawan/Documents/ComPath-
DataDownload/PDBAPI/Structure_gif_chimeraX/6o00.mp4

Movie saved to /home/pawan/.../Structure_gif_chimeraX/6o00.mp4  
  

> close

../Compath_db/PDB_downlaod_rsync/mmCIF/o0/6o06.cif.gz  

> open ../Compath_db/PDB_downlaod_rsync/mmCIF/o0/6o06.cif.gz

6o06.cif title:  
Extracellular factors prime enterovirus particles for uncoating [more info...]  
  
Chain information for 6o06.cif #1  
---  
Chain | Description  
A | VP1  
B | VP2  
C | VP3  
  
6o06.cif mmCIF Assemblies  
---  
1| complete icosahedral assembly  
2| icosahedral asymmetric unit  
3| icosahedral pentamer  
4| icosahedral 23 hexamer  
5| icosahedral asymmetric unit, std point frame  
  

> set bgColor white

> hide solvent

> lighting soft

> set silhouettes true

> color selAtoms byhetero

> rainbow chains palette paired-10

> select ligand

Nothing selected  

> style sel sphere

Changed 0 atom style  

> select clear

> color ligand & C pink

> movie record supersample 4

> turn y 1 360

> wait 360

Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/cmd_line/tool.py", line 229, in execute  
cmd.run(cmd_text)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/commands/cli.py", line 2587, in run  
result = ci.function(session, **kw_args)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/commands/open.py", line 41, in open  
from_database=from_database, ignore_cache=ignore_cache, **kw))  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/commands/open.py", line 117, in open  
models = handle_unknown_kw(session.models.open, paths, format=format,
name=name, **kw)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/commands/open.py", line 62, in handle_unknown_kw  
return f(*args, **kw)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/models.py", line 590, in open  
session, filenames, format=format, name=name, **kw)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-packages/chimerax/core/io.py",
line 461, in open_multiple_data  
models, status = open_data(session, fspec, format=format, name=name, **kw)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-packages/chimerax/core/io.py",
line 414, in open_data  
models, status = open_func(*args, **kw)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/scripting.py", line 75, in open_python_script  
exec(code, sandbox.__dict__)  
File "ChimeraX-figure-v2.py", line 38, in <module>  
run(session, "movie record supersample 4; turn y 1 360 ; wait 360 ; movie
encode /home/pawan/Documents/ComPath-
DataDownload/PDBAPI/Structure_gif_chimeraX/"+name+"")  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/commands/run.py", line 31, in run  
results = command.run(text, log=log)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/commands/cli.py", line 2587, in run  
result = ci.function(session, **kw_args)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/std_commands/wait.py", line 32, in wait  
draw_frame(session)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/std_commands/wait.py", line 43, in draw_frame  
ul.draw_new_frame()  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/updateloop.py", line 86, in draw_new_frame  
session.triggers.activate_trigger('frame drawn', self)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/triggerset.py", line 325, in activate_trigger  
trigger.activate(data)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/triggerset.py", line 190, in activate  
ret = handler.invoke(data, self._remove_bad_handlers)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/movie/movie.py", line 165, in capture_image  
i = v.image(width, height, supersample = self.supersample)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/graphics/view.py", line 409, in image  
srgba += r.frame_buffer_image(w, h)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/graphics/opengl.py", line 1054, in frame_buffer_image  
GL.glReadPixels(0, 0, w, h, GL.GL_RGBA, GL.GL_UNSIGNED_BYTE, rgba)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/PyOpenGL-3.1.0-py3.6.egg/OpenGL/GL/images.py", line 371, in
glReadPixels  
imageData  
KeyboardInterrupt  
  
KeyboardInterrupt  
  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/PyOpenGL-3.1.0-py3.6.egg/OpenGL/GL/images.py", line 371, in
glReadPixels  
imageData  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/updateloop.py", line 86, in draw_new_frame  
session.triggers.activate_trigger('frame drawn', self)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/triggerset.py", line 325, in activate_trigger  
trigger.activate(data)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/triggerset.py", line 190, in activate  
ret = handler.invoke(data, self._remove_bad_handlers)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/movie/movie.py", line 165, in capture_image  
i = v.image(width, height, supersample = self.supersample)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/graphics/view.py", line 408, in image  
self.draw(c, drawings, swap_buffers = False)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/graphics/view.py", line 159, in draw  
self._draw_scene(camera, drawings)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/graphics/view.py", line 195, in _draw_scene  
r.draw_background()  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/graphics/opengl.py", line 962, in draw_background  
GL.glClear(flags)  
KeyboardInterrupt  
  
KeyboardInterrupt  
  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/graphics/opengl.py", line 962, in draw_background  
GL.glClear(flags)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/updateloop.py", line 86, in draw_new_frame  
session.triggers.activate_trigger('frame drawn', self)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/triggerset.py", line 325, in activate_trigger  
trigger.activate(data)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/triggerset.py", line 190, in activate  
ret = handler.invoke(data, self._remove_bad_handlers)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/movie/movie.py", line 165, in capture_image  
i = v.image(width, height, supersample = self.supersample)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/graphics/view.py", line 409, in image  
srgba += r.frame_buffer_image(w, h)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/graphics/opengl.py", line 1054, in frame_buffer_image  
GL.glReadPixels(0, 0, w, h, GL.GL_RGBA, GL.GL_UNSIGNED_BYTE, rgba)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/PyOpenGL-3.1.0-py3.6.egg/OpenGL/GL/images.py", line 371, in
glReadPixels  
imageData  
KeyboardInterrupt  
  
KeyboardInterrupt  
  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/PyOpenGL-3.1.0-py3.6.egg/OpenGL/GL/images.py", line 371, in
glReadPixels  
imageData  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/updateloop.py", line 86, in draw_new_frame  
session.triggers.activate_trigger('frame drawn', self)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/triggerset.py", line 325, in activate_trigger  
trigger.activate(data)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/triggerset.py", line 190, in activate  
ret = handler.invoke(data, self._remove_bad_handlers)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/movie/movie.py", line 166, in capture_image  
i.save(save_path, self.img_fmt)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-packages/PIL/Image.py", line
1969, in save  
save_handler(self, fp, filename)  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/PIL/PpmImagePlugin.py", line 146, in _save  
ImageFile._save(im, fp, [("raw", (0, 0)+im.size, 0, (rawmode, 0, 1))])  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-packages/PIL/ImageFile.py",
line 517, in _save  
s = e.encode_to_file(fh, bufsize)  
KeyboardInterrupt  
  
KeyboardInterrupt  
  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-packages/PIL/ImageFile.py",
line 517, in _save  
s = e.encode_to_file(fh, bufsize)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback  
if not self.draw_new_frame():  
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/updateloop.py", line 50, in draw_new_frame  
from time import time  
File "<frozen importlib._bootstrap>", line 1007, in _handle_fromlist  
KeyboardInterrupt  
  
KeyboardInterrupt  
  
File "", line 1007, in _handle_fromlist  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 470.182.03
OpenGL renderer: NVIDIA T400/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Change History (2)

comment:1 by pett, 3 years ago

Component: Unassigned → Input/Output
Description: modified (diff)
Owner: set to pett
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → Keyboard interrupt while rendering movie

comment:2 by pett, 3 years ago

Resolution: → can't reproduce
Status: accepted → closed
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