Opened 3 years ago
Closed 3 years ago
#8771 closed defect (limitation)
MemoryError saving map in session
Reported by: | Owned by: | Tom Goddard | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Sessions | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.22621 ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. > open C:/Users/ASUS/Desktop/图all+local/BA.45/colorBA.4.5.cxs Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc as #1, grid size 600,600,600, pixel 0.88, shown at level 0.123, step 1, values float32 Log from Fri Mar 31 14:08:27 2023UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. > open C:\Users\Selina\Desktop\图all+local\BA.45\colorBA.4.5.cxs format session Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc as #1, grid size 600,600,600, pixel 0.88, shown at level 0.123, step 1, values float32 Log from Sun Mar 26 17:33:08 2023UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. > open C:/Users/Selina/Desktop/图all+local/BA.45/colorBA.4.5.cxs Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc as #1, grid size 600,600,600, pixel 0.88, shown at level 0.123, step 1, values float32 Log from Sat Mar 25 16:06:55 2023UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. > open C:/Users/Selina/Desktop/图all+local/BA.45/colorBA.4.5.cxs Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc as #1, grid size 600,600,600, pixel 0.88, shown at level 0.123, step 1, values float32 Log from Sat Mar 25 16:02:10 2023UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. > open C:/Users/Selina/Desktop/图all+local/BA.45/colorBA.4.5.cxs Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc as #1, grid size 600,600,600, pixel 0.88, shown at level 0.123, step 1, values float32 Log from Thu Mar 23 15:55:48 2023UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > C:\Users\Selina\Desktop\rabbit\BA45\cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc > format mrc Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc as #1, grid size 600,600,600, pixel 0.88, shown at level 0.0367, step 4, values float32 > volume #1 level 0.123 > volume #1 step 1 > color #ffffff02 > color #ffffff00 > open C:/Users/Selina/Desktop/121212-coot-1.pdb Chain information for 121212-coot-1.pdb #2 --- Chain | Description A | No description available B | No description available C | No description available L T | No description available > color bychain > surface dust #1 size 8.8 > color zone #1 near #2 distance 5.28 > ui tool show "Model Panel" > hide #!1 models > show #!1 models > hide #!1 models > hide #!2 models > show #!1 models > set bgColor white > set bgColor #ffffff00 Drag select of 1 cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc > select clear > undo > select subtract #1 Nothing selected > save C:/Users/Selina/Desktop/图all+local/BA.45/colorBA.4.5.cxs ——— End of log from Thu Mar 23 15:55:48 2023 ——— opened ChimeraX session > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!1 models > ui tool show Log > hide #!2 models > show #!2 models > show cartoons > hide atoms > interfaces ~solvent 5 buried areas: C A 4617, B C 4522, B A 3818, A T 848, B L 848 > color sel #aaaaff00 > color sel #00aaff00 > color sel #00aaff02 > color sel #00aaff19 > color sel #00aaffff > color sel #aaaaffff > color sel #00aaffff > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > show #!1 models > color zone #1 near #2 distance 5.28 > save C:/Users/Selina/Desktop/图all+local/BA.45/colorBA.4.5.cxs ——— End of log from Sat Mar 25 16:02:10 2023 ——— opened ChimeraX session > ui tool show "Model Panel" > hide #!1 models > show #!1 models > hide #!2 models > save C:/Users/Selina/Desktop/图all+local/BA.45/colorBA.4.5.cxs ——— End of log from Sat Mar 25 16:06:55 2023 ——— opened ChimeraX session > ui tool show "Model Panel" > show #!2 models > hide #!1 models > interfaces ~solvent 5 buried areas: C A 4617, B C 4522, B A 3818, A T 848, B L 848 > color sel cornflower blue > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > show #!1 models > hide #!1 models > color sel cornflower blue > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > show #!1 models > color zone #1 near #2 distance 5.28 > hide #!2 models > save C:/Users/Selina/Desktop/图all+local/BA.45/colorBA.4.5.cxs ——— End of log from Sun Mar 26 17:33:08 2023 ——— opened ChimeraX session > lighting soft > ui tool show "Model Panel" > show #!2 models > interfaces ~solvent 5 buried areas: C A 4617, B C 4522, B A 3818, A T 848, B L 848 > hide #!1 models > color sel medium blue > color sel blue > color sel medium blue > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > show #!1 models > color zone #1 near #2 distance 5.28 > color sel medium blue > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 [Repeated 1 time(s)] > color sel medium blue > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > color sel #5555ffff > color sel #0055ffff > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > color sel #555500ff > color sel #0055ffff > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > color sel #ffaa00ff > color sel #ffab03ff > color sel #ffb303ff > color sel #ffd503ff > color sel #ffcd03ff > color sel #ffc803ff > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > color sel #ffc404ff > color sel #ffc505ff > color sel #ffc404ff > color sel #ffc403ff > color sel #ffc404ff > color sel #ffc505ff > color sel #ffc404ff > color sel #ffc403ff > color sel #ffc803ff > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 [Repeated 1 time(s)] > color sel #00aaffff > color sel cornflower blue > color zone #1 near sel & #2 distance 5.28 > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > hide #!2 models > color #1 #00ffff00 models > color #1 #00ffff14 models > color #1 #ffffff14 models > color #1 #00000014 models > show #!2 models > hide #!2 models > show #!2 models > color zone #1 near #2 distance 5.28 > color #1 #00000032 models > color #1 #00000005 models > color #1 #00000046 models > color #1 #00000007 models > color #1 #0000003c models > color zone #1 near #2 distance 5.28 > hide #!2 models > color #1 #00000064 models > color #1 #0000000f models > color #1 #00000096 models > color #1 #00000001 models > color #1 #0000000a models > color #1 #00000064 models > show #!2 models > color zone #1 near #2 distance 5.28 > hide #!2 models > lighting soft > lighting full > set bgColor white [Repeated 1 time(s)] > lighting simple > lighting soft > color #1 #0000005a models > color #1 #00000009 models > color #1 #00000058 models > color #1 #00000008 models > color #1 #00000050 models > color #1 #00000008 models > color #1 #00000078 models > color #1 #00000001 models > color #1 #00000064 models > color #1 #00000001 models > color #1 #00000009 models > color #1 #0000005a models > show #!2 models > hide #!2 models > show #!2 models > lighting soft > surface dust #1 size 8.8 > color zone #1 near #2 distance 5.28 > hide #!2 models > hide #!1 models > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > show #!2 models > color #2 black > color #2 #0000005a > color #2 #ffaa005a > color #2 #ffea085a > color #2 #ffe2085a > color #2 #ffda075a > color #2 #0000005a > color sel #ffaa00ff > color sel #ffb303ff > color sel #ffb803ff > color sel #ffc803ff > color sel #ffd503ff > color sel #ffcc02ff > color sel #ffc801ff > color sel #0055ffff > show #!1 models > hide #!1 models > show #!1 models > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > lighting simple > lighting soft > undo [Repeated 1 time(s)] > select subtract #2 Nothing selected > hide #!1 models > show #!1 models > hide #!1 models > hide #!2 models > show #!2 models > show #!1 models > hide #!1 models > undo [Repeated 9 time(s)] > color sel cornflower blue > color sel #ffaa00ff > color sel #ffb701ff > color sel #ffc001ff > color sel #ffd503ff > color sel #ffef0bff > color sel #fff70cff > color sel #fff70eff > color sel #ffef0eff > color sel #ffd60aff > color sel #ffd608ff > color sel #ffcd07ff > color sel #ffcd07fe > color sel #ffcd07ff > color sel #0055ffff > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > show #!1 models > color zone #1 near #2 distance 5.28 > color sel #00aaffff > color sel cornflower blue > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > hide #!2 models > save C:/Users/Selina/Desktop/图all+local/BA.45/colorBA.4.5.cxs ——— End of log from Fri Mar 31 14:08:27 2023 ——— opened ChimeraX session > show #!2 models > interfaces ~solvent 5 buried areas: C A 4617, B C 4522, B A 3818, A T 848, B L 848 > color sel orange > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > color sel #00007fff > hide #!1 models > color sel #000000ff > color sel #00007fff > show #!1 models > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > color sel #00aaffff > color sel #03a7ffff > color sel #03afffff > color sel #0ac6ffff > color sel #0ec7ffff > color sel #10c7ffff > color sel #10cbffff > color sel #11cbffff > color sel #11d3ffff > color sel #14d4ffff > color sel #14e0ffff > color sel #17e0ffff > color sel #15e0ffff > color sel #14e0ffff > color sel #14d8ffff > color sel #11d3ffff > color sel #13d4ffff > color sel #14d4ffff > color sel #14ccffff > color sel #14d4ffff > color sel #14d8ffff > hide #!2 models > show #!2 models > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > color sel #0fe7ffff > color sel #0fd7ffff > color sel #0ed7ffff > color sel #0edfffff > color sel #0cdfffff > color sel #0ce7ffff > color sel #0cebffff > color sel #0bebffff > color sel #0bf3ffff > color sel #0afbffff > color sel #0affffff > color sel #0bffffff > color sel #0cffffff > color sel #11ffffff > color sel #15ffffff > color sel #19ffffff > color sel #1cffffff > color sel #20fbffff > color sel #21edffff > color sel #22edffff > color sel #23e9ffff > color sel #23e2ffff > color sel #23daffff > color sel #23d7ffff > color sel #23cfffff > color sel #23ccffff > color sel #25ccffff > color sel #26ccffff > color sel #27cdffff > color sel #29cdffff > color sel #2acdffff > color sel #2bceffff > color sel #2cceffff > color sel #2eceffff > color sel #30cfffff > color sel #31cfffff > color sel #33cfffff > color sel #34d0ffff > color sel #35d3ffff > color sel #37d4ffff > color sel #38d4ffff > color zone #1 near sel & #2 distance 5.28 > undo [Repeated 1 time(s)] > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > hide #!1 models > color sel #d7e9f8ff > color sel #f9f9f9ff > color sel #f0f0f0ff > color sel #ffffffff > color sel #ffcd07ff > color sel #6495edff > color sel #a1ab91ff > color sel #ffcd07ff > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > show #!1 models > color sel #00aaffff > color sel #00a6ffff > color sel #01a6ffff > color sel #07a8ffff > color sel #0fa3ffff > color sel #13a1ffff > color sel #18a3ffff > color sel #1ea5ffff > color sel #26a1ffff > color sel #2aa3ffff > color sel #2ba3ffff > color sel #2ea4ffff > color sel #37afffff > color sel #3db1ffff > color sel #47b8ffff > color sel #54c3ffff > color sel #5dccffff > color sel #69d2ffff > color sel #6ed4ffff > color sel #6fd4ffff > color sel #70d4ffff > color sel #73d5ffff > color sel #7bd1ffff > color sel #7dd2ffff > color sel #82cdffff > color sel #85ceffff > color sel #86cbffff > color sel #87cbffff > color sel #87c7ffff > color sel #85c4ffff > color sel #7bb4ffff > color sel #6ca4ffff > color sel #6ba4ffff > color sel #5e9cffff > color sel #5797ffff > color sel #5093ffff > color sel #4b90ffff > color sel #468dffff > color sel #438bffff > color sel #458cffff > color sel #498fffff > color sel #5498ffff > color sel #63a1ffff > color sel #6fa9ffff > color sel #75acffff > color sel #77adffff > color sel #78aeffff > color sel #79afffff > color sel #7bb0ffff > color sel #7db1ffff > color sel #7eb6ffff > color sel #80b7ffff > color sel #81b8ffff > color sel #82b8ffff > color sel #83b9ffff > color sel #85baffff > color sel #86bcffff > color sel #87bdffff > color sel #89beffff > color sel #8abfffff > color sel #8bbfffff > color sel #8cc0ffff > color sel #8ec1ffff > color sel #8cc0ffff > color sel #8abfffff > color sel #75acffff > color sel #5a99ffff > color sel #4681ffff > color sel #3a78ffff > color sel #2c6fffff > color sel #2365ffff > color sel #2264ffff > color sel #2167ffff > color sel #216fffff > color sel #2176ffff > color sel #2075ffff > color sel #1d7fffff > color sel #1988ffff > color sel #1888ffff > color sel #1592ffff > color sel #1491ffff > color sel #0cb2ffff > color sel #0ab6ffff > color sel #0abeffff > color sel #0ac6ffff > color sel #0acaffff > color sel #0ad2ffff > color sel #0ad6ffff > color sel #0bdeffff > color sel #0eebffff > color sel #0febffff > color sel #0eebffff > color sel #0bebffff > color sel #07d2ffff > color sel #05c5ffff > color sel #02b3ffff > color sel #01b3ffff > color sel #01afffff > color sel #01a6ffff > color sel #019effff > color sel #0199ffff > color sel #029affff > color sel #039affff > color sel #059bffff > color sel #aa55ffff > color sel #00aaffff > color sel #55aaffff > color sel #00aaffff > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > color sel #aaffffff > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > color #ff55ffff > undo > color sel #55557fff > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > color sel #aaaa7fff > color sel #aaaa00ff > color sel #aaaa7fff > hide #!2 models > show #!2 models > hide #!2 models Color zone shortcut requires 1 displayed atomic model and 1 map, got 0 atomic models, 1 maps. > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > show #!2 models > color zone #1 near #2 distance 5.28 > color sel #005500ff > color sel #55aa7fff > color sel #55aa00ff > color sel #55aa7fff > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > color sel #005500ff > color sel #015515ff > color sel #025512ff > color sel #025510ff > color sel #045510ff > color sel #06550cff > color sel #08550eff > color sel #095510ff > color sel #0b5513ff > color sel #0c5517ff > color sel #0e551cff > color sel #0f5520ff > color sel #115525ff > color sel #135528ff > color sel #14552aff > color sel #15552cff > color sel #155530ff > color sel #165537ff > color sel #165540ff > color sel #16554bff > color sel #17554cff > color sel #19554eff > color sel #1c554eff > color sel #1d554eff > color sel #1d554fff > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > color sel cornflower blue [Repeated 1 time(s)] > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > interfaces ~solvent 5 buried areas: C A 4617, B C 4522, B A 3818, A T 848, B L 848 > color #2 #1d554fff > color #2 #55557fff > color #2 #aaaa7fff [Repeated 1 time(s)] > color sel #11dd55ff > color sel #bbaaaaff > color sel #baabcfff > color sel #cc55eeff > color sel #c5e6efff > color sel #22ff44ff > color sel #2f4e73ff > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > color sel cornflower blue [Repeated 1 time(s)] > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > interfaces ~solvent 5 buried areas: C A 4617, B C 4522, B A 3818, A T 848, B L 848 > color sel #cce4f7ff > color sel #f9f9f9ff > color sel #f0f0f0ff > color sel #ffffffff > color sel #dcdcdcff > color sel #eeeeeeff > color sel #dadadaff > color sel #7a3000ff > color sel #dadadaff > color sel #f0f0f0ff > color sel #ffffffff > color sel #d4cbe1ff > color sel #baabcfff > color sel #bbaaaaff > color sel #2f4e73ff > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > color #dbebf8ff > color #f9f9f9ff > color #000000ff > color #dadadaff > color #ffffffff > color #6495edff > color #2f4e73ff > color #baabcfff > color #d5e8f7ff > color #f9f9f9ff > color #c5e6efff > hide #!2 models > hide #!1 models > show #!1 models > show #!2 models > hide #!1 models > color sel cornflower blue [Repeated 1 time(s)] > color sel #11dd55ff > color sel #1d554fff > color sel #11dd55ff > color sel #aaaa7fff > color sel #555555ff > color sel #55557fff > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > show #!1 models > color zone #1 near #2 distance 5.28 > interfaces ~solvent 5 buried areas: C A 4617, B C 4522, B A 3818, A T 848, B L 848 > color sel #d1e6f7ff > color sel #ffffffff > color sel #1d554fff > color sel #11dd55ff > color sel #aaaa7fff > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color #1 white models > color #1 black models > color #1 #00000050 models > color zone #1 near #2 distance 5.28 > color sel #bbaaaaff > color sel #baabcfff > color sel #c0adcfff > color sel #bfadcfff > color sel #beadcfff > color sel #bcaccfff > color sel #bbaccfff > color sel #baaccfff > color sel #b9accfff > color sel #b8accfff > color sel #b7accfff > color sel #b6accfff > color sel #b5accfff > color sel #b4accfff > color sel #b4abcfff > color sel #b3aacfff > color sel #b1a7cfff > color sel #aea4cfff > color sel #aca2cfff > color sel #aca1cfff > color sel #aba0cfff > color sel #a9a0cfff > color sel #a8a0cfff > color sel #a79fcfff > color sel #a59dcfff > color sel #a49dcfff > color sel #a49ccfff > color sel #a29ccfff > color sel #a09acfff > color sel #a099cfff > color sel #9e99cfff > color sel #9d99cfff > color sel #9e99cfff > color sel #9f9acfff > color sel #a09ccfff > color sel #a19dcfff > color sel #a29dcfff > color sel #cc55eeff > color sel #c5e6efff > color sel #22ff44ff > color sel #2f4e73ff > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > color zone #1 near #2 distance 5.28 > color zone #1 near sel & #2 distance 5.28 > color sel #bbaaaaff > color sel #baabcfff > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > color zone #1 near #2 distance 5.28 > select add #2 34554 atoms, 35387 bonds, 26 pseudobonds, 4347 residues, 2 models selected > select subtract #2 Nothing selected > interfaces ~solvent 5 buried areas: C A 4617, B C 4522, B A 3818, A T 848, B L 848 > hide #!2 models > ui mousemode right "map eraser" > volume erase #1 center 303.88,218.92,238.16 radius 33.085 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #4, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #4 size 8.8 > color #4 #2f4e73ff models > show #!1 models > hide #!4 models > show #!4 models > hide #!4 models > volume erase #1 center 285.67,324.51,236.79 radius 36.96 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #5, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #5 size 8.8 > color #5 #baabcfff models > show #!4 models > show #!2 models > show #!1 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > hide #!4 models > volume erase #1 center 203.97,254.53,242.84 radius 36.96 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #6, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > hide #!2 models > surface dust #6 size 8.8 > color #6 #c5e6efff models > show #!5 models > show #!4 models > show #!2 models > show #!1 models > hide #!6 models > show #!6 models > hide #!6 models > show #!6 models > hide #!6 models > show #!6 models > hide #!6 models > show #!6 models > hide #!6 models > show #!6 models > hide #!6 models > hide #!5 models > hide #!4 models > hide #!2 models > hide #3 models > hide #!1 models > show #3 models > show #!6 models > volume erase #6 center 259.81,259.51,255.95 radius 36.96 > volume erase #6 center 260.88,272.82,239.21 radius 36.96 > volume erase #6 center 259.49,259,251.1 radius 36.96 > volume erase #6 center 257.32,236.45,266.26 radius 36.96 > show #!5 models > show #!4 models > show #!1 models > hide #!6 models > show #!6 models > hide #!6 models > show #!6 models > hide #!6 models > show #!6 models > hide #!6 models > show #!6 models > hide #!6 models > hide #!5 models > hide #!4 models > volume erase #1 center 288,314.41,277.3 radius 42.504 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #7, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #7 size 8.8 > color #7 #baabcfff models > show #!6 models > show #!5 models > show #!4 models > show #!1 models > hide #!1 models > show #!1 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > hide #!4-7 target m > volume erase #1 center 221.82,250.27,307.62 radius 42.504 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #8, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #8 size 8.8 [Repeated 1 time(s)] > color #8 #c5e6efff models > show #!4-8 target m > show #!1 models > hide #!8 models > show #!8 models > hide #!8 models > show #!8 models > hide #!8 models > show #!8 models > hide #!8 models > show #!8 models > close #8 > hide #!4-7 target m > volume erase #1 center 321.65,269.45,236.39 radius 24.816 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #8, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #8 size 8.8 > color #8 #1f344dff models > color #8 #baabcfff models > show #!7 models > show #!6 models > show #!5 models > show #!4 models > show #!1 models > hide #!1 models > show #!1 models > hide #!8 models > show #!8 models > hide #!8 models > show #!8 models > hide #!8 models > show #!8 models > hide #!5-8 target m > hide #!4 models > volume erase #1 center 298.8,226.14,309.35 radius 32.736 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #9, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #9 size 8.8 > color #9 #2f4e73ff models > show #3#!4-9 target m > show #!1 models > hide #!9 models > show #!9 models > hide #!9 models > show #!9 models > hide #!9 models > show #!9 models > hide #!9 models > show #!9 models > hide #!9 models > show #!9 models > hide #!9 models > show #!9 models > hide #!9 models > show #!9 models > hide #!9 models > show #!9 models > hide #!9 models > show #!9 models > hide #!1 models > hide #3 models > hide #!5 models > hide #!6 models > hide #!7 models > hide #!4 models > hide #!8 models > show #3 models > volume erase #9 center 270.3,238.12,315.3 radius 8.184 > show #!4-9 target m > show #!1 models > hide #!9 models > show #!9 models > hide #!9 models > show #!9 models > hide #!4-9 target m > volume erase #1 center 274.64,234.8,350.87 radius 11.352 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #10, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #10 size 8.8 > color #10 #2f4e73ff models > show #!4-9 target m > show #!1 models > hide #!4-10 target m > volume erase #1 center 242.41,238.01,352.39 radius 13.728 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #11, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #11 size 8.8 > color #11 #2f4e73ff models > show #!5-10 target m > show #!4 models > show #!1 models > hide #!4-11 target m > volume erase #1 center 273.8,221.15,280.12 radius 23.232 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #12, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #12 size 8.8 > color #12 #2f4e73ff models > show #!4-12 target m > show #!1 models > hide #!4-12 target m > volume erase #1 center 247.07,227.41,281.89 radius 15.312 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #13, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #13 size 8.8 > color #13 #2f4e73ff models > show #!4-13 target m > show #!1 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > hide #3#!1-2,4-12 target m > show #3 models > show #!13 models > volume erase #13 center 270.07,235.45,283.25 radius 15.312 > volume erase #13 center 268.91,225.54,283.4 radius 15.312 > volume erase #13 center 235.9,234.94,259.79 radius 15.312 > show #3#!1-2,4-13 target m > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #3#!1-2,4-12 target m > show #3 models > volume erase #13 center 245.24,253.66,280.72 radius 15.312 > show #!4-13 target m > show #!1 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!4-12 target m > hide #!1 models > volume erase #13 center 244.92,250.41,277.11 radius 15.312 > show #!4-12 target m > show #!1 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!4-13 target m > volume erase #1 center 217.43,278.33,286.49 radius 19.272 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #14, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > color #14 #c5e6efff models > show #!4-14 target m > show #!1 models > surface dust #1 size 8.8 > surface dust #4 size 8.8 > surface dust #5 size 8.8 > surface dust #6 size 8.8 > surface dust #7 size 8.8 > surface dust #8 size 8.8 > surface dust #9 size 8.8 > surface dust #10 size 8.8 > surface dust #11 size 8.8 > surface dust #12 size 8.8 > surface dust #13 size 8.8 > surface dust #14 size 8.8 > hide #!4-14 target m > volume erase #1 center 243.56,288.93,355.18 radius 19.272 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #15, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > color #15 #c5e6efff models > show #!4-15 target m > show #!1 models > surface dust #1 size 8.8 > surface dust #4 size 8.8 > surface dust #5 size 8.8 > surface dust #6 size 8.8 > surface dust #7 size 8.8 > surface dust #8 size 8.8 > surface dust #9 size 8.8 > surface dust #10 size 8.8 > surface dust #11 size 8.8 > surface dust #12 size 8.8 > surface dust #13 size 8.8 > surface dust #14 size 8.8 > surface dust #15 size 8.8 > hide #3#!4-15 target m > show #3 models > volume erase #1 center 230.69,274.69,353.57 radius 19.272 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #16, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #16 size 8.8 > color #16 #c5e6efff models > show #!4-16 target m > show #!1 models > hide #!4-16 target m > volume erase #1 center 233.5,241.25,323.53 radius 22.44 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #17, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #17 size 8.8 > color #17 #c5e6efff models > show #!5-17 target m > show #!4 models > show #!1 models > hide #!17 models > show #!17 models > hide #!17 models > show #!17 models > hide #!17 models > show #!17 models > hide #!17 models > show #!17 models > hide #!17 models > hide #!4-16 target m > volume erase #1 center 241.51,228.88,331.36 radius 8.184 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #18, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > color #18 #2f4e73ff models > show #!4-17 target m > show #!1 models > hide #!18 models > show #!18 models > hide #!18 models > close #18 > hide #!17 models > show #!17 models > hide #!17 models > close #17 > hide #!4-16 target m > volume erase #1 center 240.61,227.99,328.98 radius 8.184 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #17, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #17 size 8.8 > color #17 #2f4e73ff models > show #3#!1-2,4-17 target m > hide #3#!1-2,4-17 target m > show #3 models > show #!1 models > volume erase #1 center 233.05,236.36,314.73 radius 11.352 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #18, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > color #18 #c5e6efff models > surface dust #18 size 8.8 > show #!4-18 target m > show #!1 models > hide #3#!4-18 target m > volume erase #1 center 230.03,252.3,326.73 radius 12.936 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #19, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #19 size 8.8 > show #3 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > color #19 #c5e6efff models > show #3#!1-2,4-19 target m > hide #3#!1-2,4-19 target m > show #3 models > show #!1 models > volume erase #1 center 228.9,279.82,330.77 radius 12.936 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #20, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #20 size 8.8 > color #20 #c5e6efff models > show #!4-20 target m > show #!1 models > hide #!4-20 target m > volume erase #1 center 265.62,227.93,333.23 radius 12.936 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #21, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > color #21 #2f4e73ff models > surface dust #21 size 8.8 [Repeated 1 time(s)] > show #!4-21 target m > show #!1 models > hide #3#!4-21 target m > show #3 models > volume erase #1 center 237.64,298.72,280.91 radius 12.936 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #22, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #22 size 8.8 > color #22 #c5e6efff models > show #!4-22 target m > show #!1 models > hide #!22 models > show #!22 models > hide #!4-22 target m > volume erase #1 center 218.47,226.68,269.52 radius 12.936 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #23, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #23 size 8.8 > color #23 #c5e6efff models > show #!4-23 target m > show #!1 models > hide #!4-23 target m > volume erase #1 center 227.2,278.03,219.37 radius 15.312 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #24, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > volume erase #24 center 213.09,262.3,222.33 radius 15.312 > volume erase #24 center 216.5,279.29,241.24 radius 15.312 > surface dust #24 size 8.8 > color #24 #2f4e73ff models > show #!4-24 target m > show #!1 models > hide #!24 models > show #!24 models > hide #3#!4-24 target m > show #3 models > volume erase #1 center 249.93,250.57,214.94 radius 23.232 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #25, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > volume erase #25 center 287.12,247.75,222.79 radius 23.232 > surface dust #25 size 8.8 > color #25 #2f4e73ff models > show #!4-25 target m > show #!1 models > hide #!4-25 target m > volume erase #1 center 241.02,219.78,246.92 radius 23.232 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #26, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > hide #!26 models > show #!26 models > surface dust #26 size 8.8 > color #26 #2f4e73ff models > show #!4-25 target m > show #!1 models > hide #!26 models > show #!26 models > hide #!26 models > show #!26 models > hide #!4-26 target m > volume erase #1 center 318.46,240.52,274.65 radius 14.52 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #27, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #27 size 8.8 > color #27 #2f4e73ff models > show #!4-27 target m > show #!1 models > hide #!4-27 target m > volume erase #1 center 274.99,242.44,225.34 radius 14.52 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #28, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #28 size 8.8 > color #28 #baabcfff models > show #!4-27 target m > show #!1 models > hide #!1 models > show #!1 models > hide #!28 models > show #!28 models > hide #!28 models > show #!28 models > hide #!28 models > show #!28 models > hide #!28 models > show #!28 models > color #28 #2f4e73ff models > hide #!4-28 target m > volume erase #1 center 238.3,318.71,248.89 radius 14.52 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #29, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #29 size 8.8 > color #29 #c5e6efff models > show #!4-29 target m > show #!1 models > hide #!4-29 target m > volume erase #1 center 236.23,314.53,219.3 radius 14.52 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #30, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #30 size 8.8 > color #30 #c5e6efff models > show #!4-30 target m > show #!1 models Can only have one displayed volume when erasing > hide #!4-30 target m > volume erase #1 center 304.35,270.46,279.23 radius 16.104 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #31, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > volume erase #31 center 287.1,285.59,286.56 radius 16.104 > volume erase #31 center 289.29,278.47,267.27 radius 16.104 > volume erase #31 center 299.18,256.94,262.04 radius 16.104 > surface dust #31 size 8.8 > color #31 #2f4e73ff models > show #!4-30 target m > show #!1 models > hide #!31 models > show #!31 models > hide #!31 models > show #!31 models > hide #!4-30 target m > hide #!1 models > volume erase #31 center 306.49,291.05,270.73 radius 16.104 > volume erase #31 center 309.94,253.18,266.14 radius 16.104 > show #!4-30 target m > show #!1 models > hide #!31 models > show #!31 models > hide #!31 models > show #!31 models > hide #!1 models > show #!1 models > hide #!1 models > hide #!4-30 target m > volume erase #31 center 296.32,285.34,299.22 radius 16.104 > volume erase #31 center 292.08,283.66,301.03 radius 16.104 [Repeated 1 time(s)] > volume erase #31 center 291.84,281.82,299.47 radius 16.104 > show #!4-30 target m > show #!1 models > hide #!31 models > show #!31 models > hide #!31 models > show #!31 models > hide #!1 models > hide #!4-30 target m > volume erase #31 center 288.12,282.94,279.73 radius 16.104 > show #!4-30 target m > show #!1 models > hide #!31 models > show #!31 models > hide #!4-31 target m > volume erase #1 center 240.36,308.07,334.62 radius 16.104 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #32, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #32 size 8.8 > color #32 #c5e6efff models > show #!4-31 target m > show #!1 models > hide #!4-32 target m > volume erase #1 center 255.57,309.05,314.01 radius 16.104 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #33, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #33 size 8.8 > color #33 #baabcfff models > show #!4-33 target m > show #!1 models > hide #!4-33 target m > volume erase #1 center 291.04,283.13,345.55 radius 24.024 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #34, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #34 size 8.8 > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > color #34 #baabcfff models > show #!4-34 target m > show #!1 models > hide #!4-34 target m > volume erase #1 center 294.9,258.28,352.72 radius 13.464 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #35, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #35 size 8.8 > color #35 #baabcfff models > show #!4-35 target m > show #!1 models > hide #!35 models > show #!35 models > hide #!4-35 target m > volume erase #1 center 274.46,299.66,327.23 radius 13.464 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #36, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #36 size 8.8 > color #36 #baabcfff models > show #!4-36 target m > show #!1 models > hide #3#!4-36 target m > show #3 models > volume erase #1 center 310.05,259.08,329.42 radius 10.296 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #37, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #37 size 8.8 > color #37 #2f4e73ff models > show #!4-37 target m > show #!1 models > hide #!4-37 target m > volume erase #1 center 277.73,283.59,377.14 radius 23.76 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #38, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #38 size 8.8 > volume erase #38 center 287.65,292.55,347.15 radius 23.76 > show #!4-37 target m > show #!1 models > color #38 #baabcfff models > hide #!4-38 target m > volume erase #1 center 267.61,245.63,371.47 radius 16.632 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #39, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #39 size 8.8 > color #39 #baabcfff models > color #39 #2f4e73ff models > show #!4-39 target m > show #!1 models > hide #!4-39 target m > volume erase #1 center 245.19,262.39,379.54 radius 16.632 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #40, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #40 size 8.8 > color #40 #c5e6efff models > show #!4-40 target m > show #!1 models > hide #3#!4-40 target m > show #3 models > volume erase #1 center 269.7,246.6,395.73 radius 16.632 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #41, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #41 size 8.8 > color #41 #2f4e73ff models > show #!4-40 target m > show #!1 models > hide #!4-40 target m Can only have one displayed volume when erasing > hide #!41 models > volume erase #1 center 255.73,266.35,393.56 radius 9.24 outside true Opened cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy as #42, grid size 600,600,600, pixel 0.88, shown at step 1, values float32 > surface dust #42 size 8.8 > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > color #42 #c5e6efff models > show #!4-41 target m > show #!1 models > hide #3 models > hide #!4-41 target m > hide #!42 models > color #1 #ffffff50 models > color #1 #ffffff00 models > show #3 models > hide #3 models > show #!2 models > color zone #1 near #2 distance 5.28 > hide #!2 models > show #!4-42 target m > surface dust #1 size 8.8 > surface dust #4 size 8.8 > surface dust #5 size 8.8 > surface dust #6 size 8.8 > surface dust #7 size 8.8 > surface dust #8 size 8.8 > surface dust #9 size 8.8 > surface dust #10 size 8.8 > surface dust #11 size 8.8 > surface dust #12 size 8.8 > surface dust #13 size 8.8 > surface dust #14 size 8.8 > surface dust #15 size 8.8 > surface dust #16 size 8.8 > surface dust #17 size 8.8 > surface dust #18 size 8.8 > surface dust #19 size 8.8 > surface dust #20 size 8.8 > surface dust #21 size 8.8 > surface dust #22 size 8.8 > surface dust #23 size 8.8 > surface dust #24 size 8.8 > surface dust #25 size 8.8 > surface dust #26 size 8.8 > surface dust #27 size 8.8 > surface dust #28 size 8.8 > surface dust #29 size 8.8 > surface dust #30 size 8.8 > surface dust #31 size 8.8 > surface dust #32 size 8.8 > surface dust #33 size 8.8 > surface dust #34 size 8.8 > surface dust #35 size 8.8 > surface dust #36 size 8.8 > surface dust #37 size 8.8 > surface dust #38 size 8.8 > surface dust #39 size 8.8 > surface dust #40 size 8.8 > surface dust #41 size 8.8 > surface dust #42 size 8.8 > lighting full > lighting soft > lighting full > save C:\Users\ASUS\Desktop\image14.png supersample 3 > save C:\Users\ASUS\Desktop\image15.png supersample 3 > save C:\Users\ASUS\Desktop\image16.png supersample 3 > save C:/Users/ASUS/Desktop/图all+local/BA.45/colorBA.4.5.cxs Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D24760> -> <chimerax.map.volume.VolumeSurface object at 0x000001949B422D60> 'surface' -> <chimerax.map.volume.Volume object at 0x000001949B422490> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x000001949D20EFA0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D24760> -> <chimerax.map.volume.VolumeSurface object at 0x000001949B422D60> 'surface' -> <chimerax.map.volume.Volume object at 0x000001949B422490> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x000001949D20EFA0>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D24760> -> <chimerax.map.volume.VolumeSurface object at 0x000001949B422D60> 'surface' -> <chimerax.map.volume.Volume object at 0x000001949B422490> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x000001949D20EFA0> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D24760> -> <chimerax.map.volume.VolumeSurface object at 0x000001949B422D60> 'surface' -> <chimerax.map.volume.Volume object at 0x000001949B422490> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x000001949D20EFA0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 116, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog _dlg.display(session, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 51, in display run(session, cmd) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 90, in provider_save saver_info.save(session, path, **provider_kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core_formats\\__init__.py", line 84, in save return cxs_save(session, path, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D24760> -> <chimerax.map.volume.VolumeSurface object at 0x000001949B422D60> 'surface' -> <chimerax.map.volume.Volume object at 0x000001949B422490> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x000001949D20EFA0>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D24760> -> <chimerax.map.volume.VolumeSurface object at 0x000001949B422D60> 'surface' -> <chimerax.map.volume.Volume object at 0x000001949B422490> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x000001949D20EFA0> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. > save C:/Users/ASUS/454545.cxs Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D24760> -> <chimerax.map.volume.VolumeSurface object at 0x000001949B422D60> 'surface' -> <chimerax.map.volume.Volume object at 0x000001949B422490> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495CE3850> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D24760> -> <chimerax.map.volume.VolumeSurface object at 0x000001949B422D60> 'surface' -> <chimerax.map.volume.Volume object at 0x000001949B422490> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495CE3850>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D24760> -> <chimerax.map.volume.VolumeSurface object at 0x000001949B422D60> 'surface' -> <chimerax.map.volume.Volume object at 0x000001949B422490> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495CE3850> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D24760> -> <chimerax.map.volume.VolumeSurface object at 0x000001949B422D60> 'surface' -> <chimerax.map.volume.Volume object at 0x000001949B422490> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495CE3850> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 116, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog _dlg.display(session, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 51, in display run(session, cmd) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 90, in provider_save saver_info.save(session, path, **provider_kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core_formats\\__init__.py", line 84, in save return cxs_save(session, path, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D24760> -> <chimerax.map.volume.VolumeSurface object at 0x000001949B422D60> 'surface' -> <chimerax.map.volume.Volume object at 0x000001949B422490> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495CE3850>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D24760> -> <chimerax.map.volume.VolumeSurface object at 0x000001949B422D60> 'surface' -> <chimerax.map.volume.Volume object at 0x000001949B422490> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495CE3850> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. > hide #6#!4-5,7-42 target m > show #6.1 models > hide #!6 models > hide #6.1 models > show #6.1 models > hide #6.1 models > show #6.1 models > hide #6.1 models > hide #!6 models > hide #!1 models > save C:/Users/ASUS/11111.cxs Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495EA67C0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495EA67C0>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495EA67C0> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495EA67C0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 116, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog _dlg.display(session, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 51, in display run(session, cmd) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 90, in provider_save saver_info.save(session, path, **provider_kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core_formats\\__init__.py", line 84, in save return cxs_save(session, path, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495EA67C0>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495EA67C0> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. > save C:/Users/ASUS/Desktop/图all+local/BA.45/colorBA.4.5.cxs Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495EA6C70> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495EA6C70>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495EA6C70> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495EA6C70> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 116, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog _dlg.display(session, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 51, in display run(session, cmd) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 90, in provider_save saver_info.save(session, path, **provider_kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core_formats\\__init__.py", line 84, in save return cxs_save(session, path, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495EA6C70>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495EA6C70> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. > ui mousemode right translate > save C:/Users/ASUS/Desktop/图all+local/BA.45/colorBA.4.5.cxs Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495E82A90> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495E82A90>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495E82A90> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495E82A90> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 116, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog _dlg.display(session, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 51, in display run(session, cmd) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 90, in provider_save saver_info.save(session, path, **provider_kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core_formats\\__init__.py", line 84, in save return cxs_save(session, path, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495E82A90>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495E82A90> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. > color #6 #c5e6effe models > color #6 #c5e6efff models > save C:/Users/ASUS/Desktop/图all+local/BA.45/colorBA.4.5.cxs Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495E488E0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495E488E0>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495E488E0> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495E488E0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 116, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog _dlg.display(session, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 51, in display run(session, cmd) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 90, in provider_save saver_info.save(session, path, **provider_kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core_formats\\__init__.py", line 84, in save return cxs_save(session, path, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495E488E0>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x0000019495E488E0> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. > save C:/Users/ASUS/Desktop/图all+local/BA.45/colorBA.4.5.cxs Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x00000194971E94F0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x00000194971E94F0>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x00000194971E94F0> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x00000194971E94F0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 116, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog _dlg.display(session, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 51, in display run(session, cmd) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 90, in provider_save saver_info.save(session, path, **provider_kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core_formats\\__init__.py", line 84, in save return cxs_save(session, path, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x00000194971E94F0>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x00000194971E94F0> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. > ui tool show "Model Panel" > show #6.1 models > hide #!6 models > color #6 #c5e6effe models > color #6 #c5e6efff models > save C:/Users/ASUS/Desktop/图all+local/BA.45/colorBA.4.5.cxs Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x00000194971E9520> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x00000194971E9520>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x00000194971E9520> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x00000194971E9520> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 116, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog _dlg.display(session, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 51, in display run(session, cmd) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 90, in provider_save saver_info.save(session, path, **provider_kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core_formats\\__init__.py", line 84, in save return cxs_save(session, path, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x00000194971E9520>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> <chimerax.map.session.GridDataState object at 0x00000194971E9520> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'cryosparc_P31_J155_007_.ba4rabbit2up_map.mrc copy' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. > show #!1 models > show #!2 models > hide #!1 models > select add #1 2 models selected > select subtract #1 Nothing selected > select add #4.1 1 model selected > select subtract #4.1 Nothing selected > rename #4 a > rename #5 b > rename #6 c > rename #7 d > rename #8 e > rename #9 f > rename #10 g > rename #11 h > rename #12 id Missing "id" keyword's argument > rename #13 j > rename #14 k > rename #15 l > rename #16 m > rename #17 name Missing "name" keyword's argument > rename #18 o > rename #19 p > rename #20 q > rename #21 r > rename #22 s > rename #23 t > rename #24 u > rename #25 v > rename #26 w > rename #27 x > rename #28 y > rename #29 z > rename #30 aa > rename #31 bb > rename #32 cc > rename #33 dd > rename #34 ee > rename #35 ff > rename #36 gg > rename #37 hh > rename #38 ii > rename #39 jj > rename #40 kk > rename #41 ll > rename #42 mm > save C:/Users/ASUS/Desktop/图all+local/BA.45/colorBA.4.5.cxs Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x000001949D245E20> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x000001949D245E20>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x000001949D245E20> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'u' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'u' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x000001949D245E20> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 116, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog _dlg.display(session, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 51, in display run(session, cmd) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 90, in provider_save saver_info.save(session, path, **provider_kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core_formats\\__init__.py", line 84, in save return cxs_save(session, path, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x000001949D245E20>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x000001949D245E20> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'u' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'u' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. > hide #24.1 models > save C:/Users/ASUS/Desktop/图all+local/BA.45/colorBA.4.5.cxs Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x0000019498D464F0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x0000019498D464F0>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x0000019498D464F0> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'u' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'u' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x0000019498D464F0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 116, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog _dlg.display(session, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 51, in display run(session, cmd) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 90, in provider_save saver_info.save(session, path, **provider_kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core_formats\\__init__.py", line 84, in save return cxs_save(session, path, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x0000019498D464F0>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x0000019498D464F0> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'u' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'u' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. > rename #24.1 surface1 > save C:/Users/ASUS/Desktop/图all+local/BA.45/colorBA.4.5.cxs Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface1' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x000001949D347460> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface1' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x000001949D347460>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface1' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x000001949D347460> ValueError: error processing: '_surface_updaters' -> -> -> 'surface1' -> 'u' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface1' -> 'u' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface1' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x000001949D347460> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 116, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog _dlg.display(session, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 51, in display run(session, cmd) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 90, in provider_save saver_info.save(session, path, **provider_kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core_formats\\__init__.py", line 84, in save return cxs_save(session, path, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface1' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x000001949D347460>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface1' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x000001949D347460> ValueError: error processing: '_surface_updaters' -> -> -> 'surface1' -> 'u' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface1' -> 'u' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. > rename #24.1 surface > show #4-42 target m > show #!1 models > save C:/Users/ASUS/Desktop/图all+local/BA.45/colorBA.4.5.cxs Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x0000019495E607C0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x0000019495E607C0>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x0000019495E607C0> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'u' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'u' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x0000019495E607C0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 116, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog _dlg.display(session, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 51, in display run(session, cmd) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 90, in provider_save saver_info.save(session, path, **provider_kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core_formats\\__init__.py", line 84, in save return cxs_save(session, path, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x0000019495E607C0>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x0000019495E607C0> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'u' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'u' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. > save C:/Users/ASUS/Desktop/图all+local/pt/111111.cxs Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x0000019495E7F250> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x0000019495E7F250>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x0000019495E7F250> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'u' -> : Error while saving session data for '_surface_updaters' -> -> -> 'surface' -> 'u' -> File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 285, in process data = sm.take_snapshot(obj, session, self.state_flags) File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 200, in take_snapshot data = state_from_grid_data(self.grid_data, session_path = session.session_file_path, File "E:\ChimeraX\bin\lib\site-packages\chimerax\map\session.py", line 310, in state_from_grid_data bytes = dt.matrix().tobytes() MemoryError The above exception was the direct cause of the following exception: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 262, in discovery self.processed[key] = self.process(obj, parents) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 290, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x0000019495E7F250> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 116, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog _dlg.display(session, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\dialog.py", line 51, in display run(session, cmd) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "E:\ChimeraX\bin\lib\site-packages\chimerax\save_command\cmd.py", line 90, in provider_save saver_info.save(session, path, **provider_kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core_formats\\__init__.py", line 84, in save return cxs_save(session, path, **kw) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 625, in save mgr.discovery(self._state_containers) File "E:\ChimeraX\bin\lib\site-packages\chimerax\core\session.py", line 266, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x0000019495E7F250>: Error while saving session data for '_surface_updaters' -> <chimerax.surface.updaters.SurfaceUpdaters object at 0x000001949500AAC0> -> <chimerax.surface.dust.Redust object at 0x0000019498D10790> -> <chimerax.map.volume.VolumeSurface object at 0x0000019498DDFDC0> 'surface' -> <chimerax.map.volume.Volume object at 0x0000019498E12370> 'u' -> <chimerax.map.session.GridDataState object at 0x0000019495E7F250> ValueError: error processing: '_surface_updaters' -> -> -> 'surface' -> 'u' -> : Error while saving session data for '_surface_updaters' -> OpenGL version: 3.3.0 NVIDIA 528.01 OpenGL renderer: NVIDIA GeForce RTX 4080 Laptop GPU/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Python: 3.9.11 Locale: zh_CN.cp936 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: windows Manufacturer: ASUSTeK COMPUTER INC. Model: ROG Strix G834JZ_G834JZ OS: Microsoft Windows 11 家庭中文版 (Build 22621) Memory: 68,319,662,080 MaxProcessMemory: 137,438,953,344 CPU: 32 13th Gen Intel(R) Core(TM) i9-13980HX OSLanguage: zh-CN Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 asttokens: 2.1.0 Babel: 2.11.0 backcall: 0.2.0 blockdiag: 3.0.0 build: 0.8.0 certifi: 2022.9.24 cftime: 1.6.2 charset-normalizer: 2.1.1 ChimeraX-AddCharge: 1.4 ChimeraX-AddH: 2.2.1 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.6 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.41.5 ChimeraX-AtomicLibrary: 8.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.7.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.1 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.2 ChimeraX-CommandLine: 1.2.4 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.5 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.3 ChimeraX-DockPrep: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.1 ChimeraX-MatchMaker: 2.0.9 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.8 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.6 ChimeraX-ModelPanel: 1.3.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.1 ChimeraX-MouseModes: 1.1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.9.1 ChimeraX-PDB: 2.6.8 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.7.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.1.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.24.3 ChimeraX-uniprot: 2.2.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.1.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.1 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0.1 colorama: 0.4.5 comtypes: 1.1.10 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.32 debugpy: 1.6.4 decorator: 5.1.1 docutils: 0.19 entrypoints: 0.4 executing: 1.2.0 filelock: 3.7.1 fonttools: 4.38.0 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.33 imagecodecs: 2022.7.31 imagesize: 1.4.1 importlib-metadata: 5.1.0 ipykernel: 6.15.3 ipython: 8.4.0 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.1.2 jupyter-client: 7.3.4 jupyter-core: 5.1.0 kiwisolver: 1.4.4 line-profiler: 3.5.1 lxml: 4.9.1 lz4: 4.0.2 MarkupSafe: 2.1.1 matplotlib: 3.5.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.0 networkx: 2.8.5 numexpr: 2.8.4 numpy: 1.23.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pickleshare: 0.7.5 Pillow: 9.2.0 pip: 22.2.2 pkginfo: 1.8.3 platformdirs: 2.5.4 prompt-toolkit: 3.0.33 psutil: 5.9.1 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.12.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2022.6 pywin32: 303 pyzmq: 24.0.1 qtconsole: 5.3.1 QtPy: 2.3.0 RandomWords: 0.4.0 requests: 2.28.1 scipy: 1.9.0 setuptools: 65.1.1 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 5.1.1 sphinx-autodoc-typehints: 1.19.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tifffile: 2022.7.31 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.3.0 urllib3: 1.26.13 wcwidth: 0.2.5 webcolors: 1.12 wheel: 0.37.1 wheel-filename: 1.4.1 WMI: 1.5.1 zipp: 3.11.0
Change History (2)
comment:1 by , 3 years ago
Component: | Unassigned → Sessions |
---|---|
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → MemoryError saving map in session |
comment:2 by , 3 years ago
Resolution: | → limitation |
---|---|
Status: | assigned → closed |
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Opened 42 maps each of size 600 x 600 x 600 with float values (864 Mbytes each) and then used volume eraser on every one, probably via a script, then tried to save a session. Since all 42 volume erased maps were in memory they would be saved in the session file. Computer has 64 Gbytes of memory but ran out.
Might be worth putting in a clearer "out of memory" error message in the future. But this is a pretty extreme use case, so not going to do it unless more people report it.