Opened 3 years ago

Closed 3 years ago

#8879 closed defect (can't reproduce)

Unknown crash

Reported by: chimerax-bug-report@… Owned by: pett
Priority: normal Milestone:
Component: Core Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        macOS-13.3.1-arm64-arm-64bit
ChimeraX Version: 1.6rc202304182023 (2023-04-18 20:23:09 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
{"app_name":"ChimeraX","timestamp":"2023-04-19 19:49:55.00 -0500","app_version":"","slice_uuid":"a5992708-d5b4-36ec-ac0a-e525f6105b56","build_version":"","platform":1,"share_with_app_devs":0,"is_first_party":1,"bug_type":"309","os_version":"macOS 13.3.1 (22E261)","roots_installed":0,"incident_id":"5F25477C-9DD2-4533-B1A6-62424E34D919","name":"ChimeraX"}
{
  "uptime" : 180000,
  "procRole" : "Unspecified",
  "version" : 2,
  "userID" : 501,
  "deployVersion" : 210,
  "modelCode" : "MacBookPro17,1",
  "coalitionID" : 45150,
  "osVersion" : {
    "train" : "macOS 13.3.1",
    "build" : "22E261",
    "releaseType" : "User"
  },
  "captureTime" : "2023-04-19 19:49:52.6725 -0500",
  "incident" : "5F25477C-9DD2-4533-B1A6-62424E34D919",
  "pid" : 63274,
  "translated" : false,
  "cpuType" : "ARM-64",
  "roots_installed" : 0,
  "bug_type" : "309",
  "procLaunch" : "2023-04-19 15:21:48.6419 -0500",
  "procStartAbsTime" : 4445772353533,
  "procExitAbsTime" : 4546708706151,
  "procName" : "ChimeraX",
  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "A7DA96D0-BD27-482D-9627-1ED5F1BAD3D7",
  "responsiblePid" : 63213,
  "codeSigningID" : "",
  "codeSigningTeamID" : "",
  "codeSigningFlags" : 570491649,
  "codeSigningValidationCategory" : 0,
  "codeSigningTrustLevel" : 0,
  "wakeTime" : 49,
  "sleepWakeUUID" : "70C4662D-9CEC-4725-BC27-5C012F1F4E88",
  "sip" : "enabled",
  "vmRegionInfo" : "0x1010082b4 is in 0x100e3c000-0x1010ac000;  bytes after start: 1884852  bytes before end: 671051\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      mapped file                 100e34000-100e3c000    [   32K] r--\/rwx SM=COW  ...t_id=efbad34b\n--->  mapped file                 100e3c000-1010ac000    [ 2496K] r-x\/rwx SM=COW  ...t_id=ee49a64b\n      mapped file                 1010ac000-1010b4000    [   32K] r--\/rwx SM=COW  ...t_id=ee63654b",
  "exception" : {"codes":"0x000000000000000a, 0x00000001010082b4","rawCodes":[10,4311777972],"type":"EXC_BAD_ACCESS","signal":"SIGILL","subtype":"KERN_MEMORY_ERROR at 0x00000001010082b4"},
  "termination" : {"flags":0,"code":4,"namespace":"SIGNAL","indicator":"Illegal instruction: 4","byProc":"ChimeraX","byPid":63274},
  "ktriageinfo" : "VM - (arg = 0x0) Object has no pager\nVM - (arg = 0x0) Object has no pager\nVM - (arg = 0x0) Object has no pager\nVM - (arg = 0x0) Object has no pager\nVM - (arg = 0x0) Object has no pager\n",
  "vmregioninfo" : "0x1010082b4 is in 0x100e3c000-0x1010ac000;  bytes after start: 1884852  bytes before end: 671051\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      mapped file                 100e34000-100e3c000    [   32K] r--\/rwx SM=COW  ...t_id=efbad34b\n--->  mapped file                 100e3c000-1010ac000    [ 2496K] r-x\/rwx SM=COW  ...t_id=ee49a64b\n      mapped file                 1010ac000-1010b4000    [   32K] r--\/rwx SM=COW  ...t_id=ee63654b",
  "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
  "faultingThread" : 0,
  "threads" : [{"triggered":true,"id":2627900,"threadState":{"x":[{"value":10},{"value":4605346480},{"value":4605346584},{"value":4605346480},{"value":4605346584},{"value":16343379205905668409},{"value":101},{"value":4872134712},{"value":4311777972},{"value":8215724304},{"value":0},{"value":2},{"value":2},{"value":0},{"value":4294967296},{"value":4600621560},{"value":3},{"value":4311830748},{"value":0},{"value":16343379205905668409},{"value":4605346584},{"value":8215760896},{"value":2},{"value":4871701952},{"value":4600612848},{"value":18446744073709551615},{"value":4872134712},{"value":4872136576},{"value":202}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6684551812},"cpsr":{"value":4096},"fp":{"value":4605346464},"sp":{"value":4605346432},"esr":{"value":2181038087,"description":"(Instruction Abort) Translation fault"},"pc":{"value":4311777972,"matchesCrashFrame":1},"far":{"value":4311777972}},"frames":[{"imageOffset":4311777972,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0},{"imageOffset":6684551812,"imageIndex":0}]},{"id":2627931,"frames":[{"imageOffset":6684112656,"imageIndex":0},{"imageOffset":4346780512,"imageIndex":0},{"imageOffset":6684360616,"imageIndex":0},{"imageOffset":6684339616,"imageIndex":0}]},{"id":2627932,"frames":[{"imageOffset":6684112656,"imageIndex":0},{"imageOffset":4346780512,"imageIndex":0},{"imageOffset":6684360616,"imageIndex":0},{"imageOffset":6684339616,"imageIndex":0}]},{"id":2627933,"frames":[{"imageOffset":6684112656,"imageIndex":0},{"imageOffset":4346780512,"imageIndex":0},{"imageOffset":6684360616,"imageIndex":0},{"imageOffset":6684339616,"imageIndex":0}]},{"id":2627934,"frames":[{"imageOffset":6684112656,"imageIndex":0},{"imageOffset":4346780512,"imageIndex":0},{"imageOffset":6684360616,"imageIndex":0},{"imageOffset":6684339616,"imageIndex":0}]},{"id":2627935,"frames":[{"imageOffset":6684112656,"imageIndex":0},{"imageOffset":4346780512,"imageIndex":0},{"imageOffset":6684360616,"imageIndex":0},{"imageOffset":6684339616,"imageIndex":0}]},{"id":2627936,"frames":[{"imageOffset":6684112656,"imageIndex":0},{"imageOffset":4346780512,"imageIndex":0},{"imageOffset":6684360616,"imageIndex":0},{"imageOffset":6684339616,"imageIndex":0}]},{"id":2627937,"frames":[{"imageOffset":6684112656,"imageIndex":0},{"imageOffset":4346780512,"imageIndex":0},{"imageOffset":6684360616,"imageIndex":0},{"imageOffset":6684339616,"imageIndex":0}]}],
  "usedImages" : [
  {
    "size" : 0,
    "source" : "A",
    "base" : 0,
    "uuid" : "00000000-0000-0000-0000-000000000000"
  }
],
  "sharedCache" : {
  "base" : 6680166400,
  "size" : 3539533824,
  "uuid" : "ebddd61c-5dcf-399c-a88b-759edf197103"
},
  "vmSummary" : "ReadOnly portion of Libraries: Total=800.9M resident=0K(0%) swapped_out_or_unallocated=800.9M(100%)\nWritable regions: Total=1.6G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.6G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nKernel Alloc Once                   32K        1 \nMALLOC                           249.2M       32 \nMALLOC guard page                   96K        5 \nMALLOC_MEDIUM (reserved)         720.0M        6         reserved VM address space (unallocated)\nMALLOC_NANO (reserved)           384.0M        1         reserved VM address space (unallocated)\nSTACK GUARD                        112K        7 \nStack                             11.7M        8 \nStack Guard                       56.0M        1 \nVM_ALLOCATE                      180.5M       90 \nVM_ALLOCATE (reserved)            96.0M        2         reserved VM address space (unallocated)\n__DATA                              11K        1 \n__DATA_CONST                        22K        1 \n__DATA_DIRTY                         7K        1 \n__LINKEDIT                       800.4M        1 \n__TEXT                             572K        1 \ndyld private memory                272K        2 \nmapped file                       42.8M      196 \nshared memory                       32K        2 \n===========                     =======  ======= \nTOTAL                              2.5G      358 \nTOTAL, minus reserved VM space     1.3G      358 \n",
  "legacyInfo" : {
  "threadTriggered" : {

  }
},
  "logWritingSignature" : "38c93837f47bbdd03ddcc65924526eefc4d75d75",
  "trialInfo" : {
  "rollouts" : [
    {
      "rolloutId" : "62c73fd17cce0d1b0bcb8a02",
      "factorPackIds" : {

      },
      "deploymentId" : 240000061
    },
    {
      "rolloutId" : "639124e81d92412bfb4880b3",
      "factorPackIds" : {

      },
      "deploymentId" : 240000004
    }
  ],
  "experiments" : [
    {
      "treatmentId" : "c28e4ee6-1b08-4f90-8e05-2809e78310a3",
      "experimentId" : "6317d2003d24842ff850182a",
      "deploymentId" : 400000013
    }
  ]
}
}
===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
You can double click a model's Name or ID in the model panel to edit those
fields  
UCSF ChimeraX version: 1.6rc202304182023 (2023-04-18)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> ui tool show AlphaFold

> alphafold predict
> >HMOPCNDC_00979hydroxymycolatesynthaseMmaA4[MycobacteriumtuberculosisH37Rv]MAEKPISPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEVTSEEVYNRYMKYLRGCEHYFTDEMLDCSLVTYLKPGAAA

Missing or invalid "sequences" argument: Sequences argument
">HMOPCNDC_00979hydroxymycolatesynthaseMmaA4[MycobacteriumtuberculosisH37Rv]MAEKPISPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEVTSEEVYNRYMKYLRGCEHYFTDEMLDCSLVTYLKPGAAA"
is not a chain specifier, alignment id, UniProt id, or sequence characters  

> alphafold predict
> MAEKPISPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEVTSEEVYNRYMKYLRGCEHYFTDEMLDCSLVTYLKPGAAA

Please cite ColabFold: Making protein folding accessible to all. Nature
Methods (2022) if you use these predictions.  
Running AlphaFold prediction  
AlphaFold prediction finished  
Results in /Users/karlbriegel/Downloads/ChimeraX/AlphaFold/prediction_1  

> open
> /Users/karlbriegel/Downloads/ChimeraX/AlphaFold/prediction_1/best_model.pdb

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
  

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/karlbriegel/Desktop/movie1.mp4

Movie saved to /Users/karlbriegel/Desktop/movie1.mp4  
  

> style sphere

Changed 2410 atom styles  

> select add #1

2410 atoms, 2469 bonds, 298 residues, 1 model selected  

> mlp sel

Map values for surface "best_model.pdb_A SES surface": minimum -30.43, mean
-4.826, maximum 24.16  
To also show corresponding color key, enter the above mlp command and add key
true  

> color sel bychain

> color sel byhetero

> rainbow sel

> color sel bychain

> mlp sel

Map values for surface "best_model.pdb_A SES surface": minimum -30.43, mean
-4.826, maximum 24.16  
To also show corresponding color key, enter the above mlp command and add key
true  

> color sel bypolymer

> rainbow sel

> alphafold match
> MAEKPISPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEVTSEEVYNRYMKYLRGCEHYFTDEMLDCSLVTYLKPGAAA

Fetching AlphaFold database settings from
https://www.rbvi.ucsf.edu/chimerax/data/status/alphafold_database3.json  
Fetching compressed AlphaFold R4M388 from
https://alphafold.ebi.ac.uk/files/AF-R4M388-F1-model_v4.cif  
1 AlphaFold model found using sequence similarity searches: R4M388 (1
sequences)  
Sequence Similarity  
---  
AlphaFold Model| Query Sequence| Identity %| Coverage %  
R4M388_MYCTX | MAEKP...PGAAA | 100.0 | 100.0  
Opened 1 AlphaFold model  

> hide #!1 models

> select subtract #1

1 model selected  

> ui tool show "Blast Protein"

> blastprotein
> MAEKPISPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEVTSEEVYNRYMKYLRGCEHYFTDEMLDCSLVTYLKPGAAA
> database pdb cutoff 1e-3 matrix BLOSUM62 maxSeqs 100 version None name bp1

Webservices job id: 42PSYWCB1Z81MXBM  

> open pdb:2FK7

| Summary of feedback from opening 2FK7 fetched from pdb  
---  
note | Fetching compressed mmCIF 2fk7 from
http://files.rcsb.org/download/2fk7.cif  
  
2fk7 title:  
Crystal structure of Hma (MmaA4) from Mycobacterium tuberculosis, apo-form
[more info...]  
  
Chain information for 2fk7 #3  
---  
Chain | Description  
A | methoxy mycolic acid synthase 4  
  

> select clear

> hide #2 models


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.6rc202304182023 (2023-04-18)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M1
OpenGL vendor: Apple

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro17,1
      Model Number: MYD82LL/A
      Chip: Apple M1
      Total Number of Cores: 8 (4 performance and 4 efficiency)
      Memory: 8 GB
      System Firmware Version: 8422.100.650
      OS Loader Version: 8422.100.650

Software:

    System Software Overview:

      System Version: macOS 13.3.1 (22E261)
      Kernel Version: Darwin 22.4.0
      Time since boot: 11 days, 17 hours, 32 minutes

Graphics/Displays:

    Apple M1:

      Chipset Model: Apple M1
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 8
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9
    ChimeraX-AddH: 2.2.4
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6rc202304182023
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.2
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.2.22
    imagesize: 1.4.1
    importlib-metadata: 6.5.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.2.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    zipp: 3.15.0

Change History (2)

comment:1 by pett, 3 years ago

Cc: Tom Goddard added
Component: Unassigned → Core
Owner: set to pett
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → Unknown crash

comment:2 by pett, 3 years ago

Resolution: → can't reproduce
Status: accepted → closed
Note: See TracTickets for help on using tickets.