![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Apr 9, 2023:
- 7:35 PM Ticket #8808 (Crash forking ffmpeg) created by
- […]
- 12:43 PM Ticket #8807 (Crash in msgpack_deserialize during session restore) created by
- […]
- 12:21 PM Ticket #8806 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 9:20 AM Ticket #8805 (Read mmCIF: not enough memory) created by
- […]
Apr 8, 2023:
Apr 7, 2023:
- 4:19 PM Ticket #6208 (Crash deleting structure) closed by
- fixed: This no longer reproduces in the current ChimeraX, so other changes …
- 3:49 PM Ticket #8324 (Crash in removeDockWidget from clicking on a half-docked panel) closed by
- fixed: Fixed in 1.6.
- 2:35 PM Ticket #6821 (Allow 'info' command to write directly to a file) closed by
- fixed: In tomorrow's daily build, all the 'info' commands (except 'info …
- 2:02 PM Dev2022-4-10 edited by
- (diff)
- 2:02 PM Dev2022-4-10 created by
- 2:00 PM DeveloperMeetings edited by
- (diff)
- 12:11 PM Ticket #8799 (Tomogram black in LookSee unless scaled large) closed by
- fixed: Fixed. I changed the LookSee scaling code so that it scales the mesh …
- 11:52 AM Ticket #8803 (Unknown crash) created by
- […]
- 11:03 AM Ticket #8794 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- nonchimerax: Qt can't start on Linux.
- 11:02 AM Ticket #8796 (Floating-point exception in glBufferSubData) closed by
- nonchimerax: Apple's AMD graphics driver crashed. Unfortunately Apple deprecated …
- 10:28 AM Ticket #8508 (Crash in removeDockWidget) closed by
- duplicate: No reply from user. Probable duplicate of #8324
- 9:55 AM Ticket #8801 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) closed by
- duplicate: Hi Jitendra, Thanks for reporting this problem. It has been fixed so …
- 4:57 AM Ticket #8802 (Crash estimating association parameters) created by
- […]
Apr 6, 2023:
- 11:11 PM Ticket #8801 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) created by
- […]
- 7:45 PM Ticket #8797 (Scene bounds not update after rename command changes model hierarchy) closed by
- fixed: Fixed. Not in 1.6. The rename command changed the model hierarchy. …
- 6:53 PM Ticket #8800 (surface transform command scale option erases vertex colors) closed by
- fixed: Fixed in 1.6. Setting new surface geometry erased vertex coloring and …
- 6:41 PM Ticket #8795 (surface transform command: AttributeError: 'NoneType' object has no ...) closed by
- fixed: Fixed. Was scaling empty surface models that had vertices = None.
- 6:33 PM Ticket #8800 (surface transform command scale option erases vertex colors) created by
- […]
- 6:20 PM Ticket #8799 (Tomogram black in LookSee unless scaled large) created by
- Begin forwarded message: From: "Schmid, Michael F." Subject: …
- 6:16 PM Ticket #8798 (ChimeraX hangs at startup checking for updates) created by
- Begin forwarded message: From: Tom Ferrin Subject: very long startup …
- 5:55 PM Ticket #8797 (Scene bounds not update after rename command changes model hierarchy) created by
- […]
- 5:26 PM Ticket #8796 (Floating-point exception in glBufferSubData) created by
- […]
- 5:25 PM Ticket #8795 (surface transform command: AttributeError: 'NoneType' object has no ...) created by
- […]
- 4:58 PM 2023-4-6 edited by
- (diff)
- 4:53 PM 2023-4-6 edited by
- (diff)
- 4:53 PM 2023-4-6 edited by
- (diff)
- 3:51 PM Ticket #8794 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 1:31 PM Ticket #8792 (Graphics crash, macOS 12.6.3, Intel Iris Graphics 6100) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 1:29 PM Ticket #8791 (read_full_array: Device not configured) closed by
- not a bug: User opened MRC map and later when ChimeraX tried to read data …
- 9:55 AM Ticket #8793 (Restore new session in old ChimeraX) closed by
- limitation
- 7:40 AM Ticket #8793 (Restore new session in old ChimeraX) created by
- […]
Apr 5, 2023:
- 5:46 PM Ticket #8789 (Modeller: 'NoneType' object has no attribute 'name') closed by
- duplicate
- 5:20 PM Ticket #8786 (Crash in removeDockWidget) closed by
- can't reproduce: Probable duplicate of #8324
- 4:46 PM Ticket #5729 (sqm suggestions) closed by
- fixed: Charge computation falls back to no -ek flag if using the flag result …
- 1:40 PM Ticket #8792 (Graphics crash, macOS 12.6.3, Intel Iris Graphics 6100) created by
- […]
- 1:36 PM Ticket #8791 (read_full_array: Device not configured) created by
- […]
- 12:37 PM Ticket #8790 (ISOLDE: residue_graph: edges should be a n x 2 array of unsigned ints) created by
- […]
- 12:12 PM Ticket #8789 (Modeller: 'NoneType' object has no attribute 'name') created by
- […]
- 12:02 PM Ticket #8788 (MemoryError opening mmCIF files) created by
- […]
- 11:07 AM Ticket #8787 (Give users a way to access the Imaging Data Commons from ChimeraX) created by
- 9:52 AM Ticket #8785 (Restore new session in old ChimeraX) closed by
- limitation
Apr 4, 2023:
- 10:38 PM Ticket #1880 (Have macOS installer dmg show arrow to drag ChimeraX to Applications) closed by
- fixed: I installed the Python package dmgbuild on the Mac build machines and …
- 5:42 PM NIAID2022 edited by
- (diff)
- 5:28 PM Ticket #8783 (Crash emitting color_pause signal) closed by
- fixed: Maybe fixed in devel branch, not in 1.6. I wasn't able to reproduce …
- 2:11 PM Ticket #8786 (Crash in removeDockWidget) created by
- […]
- 12:48 PM Ticket #8785 (Restore new session in old ChimeraX) created by
- […]
- 10:41 AM Ticket #8782 (Crash closing tool window) closed by
- can't reproduce
- 10:34 AM Ticket #8777 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:32 AM Ticket #8775 (saving image: glClear: invalid framebuffer operation) closed by
- can't reproduce: Error drawing status line. Mac laptop with external display connected …
- 10:27 AM 2023-4-6 created by
- 10:26 AM DeveloperMeetings edited by
- (diff)
- 10:00 AM Ticket #8781 (Unknown crash at startup) closed by
- can't reproduce
- 9:57 AM Ticket #8780 (Unsupported scale factor (0.000000) detected on Display0) closed by
- can't reproduce: *Probably* the same as #8226. The user does have two displays.
- 9:49 AM Ticket #8778 (2D Builder: HTTP Error 500: Internal Server Error) closed by
- duplicate
- 9:23 AM Ticket #8784 (Start 2D Builder: ImportError: cannot import name 'MolBuilder' from ...) created by
- […]
- 9:03 AM Ticket #8783 (Crash emitting color_pause signal) created by
- […]
- 8:21 AM Ticket #8782 (Crash closing tool window) created by
- […]
- 7:35 AM Ticket #8781 (Unknown crash at startup) created by
- […]
- 6:06 AM Ticket #8780 (Unsupported scale factor (0.000000) detected on Display0) created by
- […]
- 1:55 AM Ticket #8779 (Unknown crash) created by
- […]
Apr 3, 2023:
- 6:31 PM Ticket #8778 (2D Builder: HTTP Error 500: Internal Server Error) created by
- […]
- 6:13 PM Ticket #8777 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics) created by
- […]
- 6:12 PM Ticket #8776 (2D Builder: HTTP Error 500: Internal Server Error) created by
- […]
- 4:13 PM Ticket #8774 (Close session: 'Bond' object has no attribute 'rotaters') closed by
- fixed
- 4:06 PM Dev2022-4-3 edited by
- (diff)
- 4:06 PM Dev2022-4-3 edited by
- (diff)
- 3:45 PM Ticket #6505 (Chimera→ChimeraX session converter) closed by
- fixed: It sounds like we've done all of the upfront work on this and can open …
- 3:04 PM Dev2022-4-3 created by
- 3:02 PM DeveloperMeetings edited by
- (diff)
- 2:58 PM Ticket #8746 (ORCA file: 'utf-8' codec can't decode byte) closed by
- fixed: I have made the the generic opener code fall back to utf-16 and then …
- 2:36 PM Ticket #8775 (saving image: glClear: invalid framebuffer operation) created by
- […]
- 1:01 PM Ticket #8774 (Close session: 'Bond' object has no attribute 'rotaters') created by
- […]
- 12:35 PM Ticket #8770 (Cartoon style: float division by zero) closed by
- fixed: Fixed in 1.6 and daily build. Made cartoon style width, thickness, …
- 12:26 PM Ticket #8769 (ESMFold: name 'SearchError' is not defined) closed by
- fixed: Fixed. ChimeraX was trying to search the ESMFold database for a …
- 12:13 PM Ticket #8771 (MemoryError saving map in session) closed by
- limitation: Opened 42 maps each of size 600 x 600 x 600 with float values (864 …
- 12:07 PM Ticket #8773 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- nonchimerax
- 11:56 AM ChangeLog edited by
- (diff)
- 11:56 AM Ticket #8768 (ViewDockX: QEventLoop' object has no attribute 'exec_) closed by
- duplicate
- 11:54 AM Ticket #8767 (ViewDockX: QEventLoop' object has no attribute 'exec_) closed by
- duplicate
- 11:53 AM Ticket #8766 (XMAS: crash in ~QGridLayout()) closed by
- duplicate: duplicate of #8575
- 11:49 AM Ticket #8765 (Crash in modal dialog) closed by
- can't reproduce
- 11:47 AM Ticket #8764 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 11:41 AM Ticket #8763 ("seq_viewer" keyword now just "viewer") closed by
- duplicate
- 11:38 AM Ticket #8762 (MD Viewer: self.atomLocation[0]: list index out of range) closed by
- not a bug: Not a multi-model PDB file
- 11:35 AM Ticket #8756 (Switching background color loses mouse wheel zoom) closed by
- not a bug: The mouse pointer needs to be in the graphics pane for the …
- 11:25 AM Ticket #8760 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 11:23 AM Ticket #8759 (Crash in QMainWindow::removeDockWidget) closed by
- can't reproduce
- 11:21 AM Ticket #8758 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- nonchimerax: Qt can't use OpenGL.
- 11:20 AM Ticket #8757 (Graphics crash, macOS 10.15.7, NVIDIA GeForce GTX 780M) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:06 AM Ticket #8744 (TOML metadata: Reference url none breaks 'open formats' table) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/c3b95044030a1153cf14295ae92847 …
- 9:16 AM Ticket #8773 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 9:09 AM Ticket #8772 (isolde residue stepper referencing dead structure) created by
- […]
- 6:47 AM Ticket #8771 (MemoryError saving map in session) created by
- […]
Apr 2, 2023:
- 11:17 PM Ticket #8770 (Cartoon style: float division by zero) created by
- […]
- 9:49 PM Ticket #8769 (ESMFold: name 'SearchError' is not defined) created by
- […]
- 9:18 PM Ticket #8768 (ViewDockX: QEventLoop' object has no attribute 'exec_) created by
- […]
- 9:18 PM Ticket #8767 (ViewDockX: QEventLoop' object has no attribute 'exec_) created by
- […]
- 8:22 PM Ticket #8766 (XMAS: crash in ~QGridLayout()) created by
- […]
- 7:58 PM Ticket #8765 (Crash in modal dialog) created by
- […]
- 9:40 AM Ticket #8764 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 5:30 AM Ticket #8763 ("seq_viewer" keyword now just "viewer") created by
- […]
- 1:11 AM Ticket #8762 (MD Viewer: self.atomLocation[0]: list index out of range) created by
- […]
- 12:08 AM Ticket #8761 (Crash in readcif::CIFFile::parse) created by
- […]
Apr 1, 2023:
- 6:01 PM ChangeLog edited by
- (diff)
- 3:07 PM Ticket #8760 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 12:13 PM Ticket #8759 (Crash in QMainWindow::removeDockWidget) created by
- […]
Mar 31, 2023:
- 10:28 PM Ticket #8758 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 4:55 PM Ticket #8757 (Graphics crash, macOS 10.15.7, NVIDIA GeForce GTX 780M) created by
- […]
- 4:06 PM Ticket #8756 (Switching background color loses mouse wheel zoom) created by
- […]
- 2:58 PM Ticket #8753 (glTexImage3D: out of memory) closed by
- limitation: As the error message said, the graphics ran out of memory. Not …
- 2:55 PM Ticket #8748 (Crash (saving image?)) closed by
- nonchimerax: The real fix is not to use ancient CentOS 7. But I know SBGrid is …
- 2:52 PM Ticket #8749 (Crash saving image) closed by
- nonchimerax: Does it crash on every image save? For instance if you open no data …
- 1:51 PM Ticket #8754 (MatchMaker: wrapped C/C++ object of type ChainMenuButton has been deleted) closed by
- duplicate
- 1:39 PM Ticket #8752 (Centroid distances) closed by
- duplicate: Hi Dawid, Thanks for reporting this problem. It has been fixed in …
- 1:23 PM Ticket #8751 (Crash saving image) closed by
- duplicate
- 1:21 PM Ticket #8750 (Crash saving image) closed by
- duplicate
- 5:30 AM Ticket #8755 ("select clear" during simulation: Called setParameter() with invalid ...) created by
- […]
- 2:56 AM Ticket #8754 (MatchMaker: wrapped C/C++ object of type ChainMenuButton has been deleted) created by
- […]
Mar 30, 2023:
- 5:55 PM Ticket #8541 (QWindowsWindow::setDarkBorderToWindow: Unable to set dark window border) closed by
- fixed: Fixed. Made Qt message logging suppress this warning.
- 5:54 PM Ticket #8753 (glTexImage3D: out of memory) created by
- […]
- 5:49 PM Ticket #8752 (Centroid distances) created by
- […]
- 1:25 PM 2023-3-30 edited by
- (diff)
- 12:40 PM Ticket #8751 (Crash saving image) created by
- […]
- 12:22 PM Ticket #8750 (Crash saving image) created by
- […]
- 12:14 PM Ticket #8749 (Crash saving image) created by
- […]
- 12:12 PM Ticket #8748 (Crash (saving image?)) created by
- […]
- 8:35 AM Ticket #8745 (Crash getting text input from Save dialog?) closed by
- can't reproduce
- 8:33 AM Ticket #8747 (ORCA file: could not convert string to float: 'DENSITY') created by
- […] methanol.inp
- 7:59 AM Ticket #8746 (ORCA file: 'utf-8' codec can't decode byte) created by
- […]
- 2:43 AM Ticket #8745 (Crash getting text input from Save dialog?) created by
- […]
Mar 29, 2023:
- 5:18 PM 2023-3-30 edited by
- (diff)
- 3:19 PM Ticket #5687 (AddH: spurious OXT) closed by
- fixed: Not really sure if the mmCIF or PDB treatment is better (lean to PDB), …
- 2:10 PM Ticket #8743 (glDrawBuffer: invalid operation) closed by
- can't reproduce: Possible graphics driver bug. Selecting a PDB model. Very old …
- 2:08 PM Ticket #8741 (Save GLTF: list index out of range) closed by
- can't reproduce: Wow ChimeraX 0.8. The gltf writing code has totally changed so not …
- 1:25 PM Ticket #8744 (TOML metadata: Reference url none breaks 'open formats' table) created by
- XML bundle builder would not include "reference_url: None" in …
- 10:13 AM Ticket #8743 (glDrawBuffer: invalid operation) created by
- […]
- 9:39 AM Ticket #8740 (mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') closed by
- duplicate: Hi Haaris, This bug was fixed in the 1.5 production release (and the …
- 6:09 AM Ticket #8742 (MemoryError open mmCIF) created by
- […]
- 2:15 AM Ticket #8741 (Save GLTF: list index out of range) created by
- […]
- 1:07 AM Ticket #8740 (mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') created by
- […]
Mar 28, 2023:
- 7:44 PM Ticket #8739 (StarMap: 'NoneType' object has no attribute 'set_value') created by
- […]
- 2:56 PM 2023-3-30 created by
- 2:53 PM DeveloperMeetings edited by
- (diff)
- 11:12 AM Ticket #8738 (Cannot import name 'MolBuilder' from 'SEQCROW.tools') closed by
- can't reproduce
- 9:32 AM Ticket #8736 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- nonchimerax: Maybe the most common cause of this is ssh remote display with …
- 8:53 AM Ticket #8737 (Crash in event loop) closed by
- can't reproduce
- 7:38 AM Ticket #8738 (Cannot import name 'MolBuilder' from 'SEQCROW.tools') created by
- […]
- 7:22 AM Ticket #8737 (Crash in event loop) created by
- […]
- 4:11 AM Ticket #8736 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 2:32 AM Ticket #8734 (Qscore: ValueError: min() arg is an empty sequence) closed by
-
fixed: Fixed. Already had a sanity-check
if residues is None:in there, but …
Mar 27, 2023:
- 6:09 PM Ticket #8720 (Distance from centroid to atoms non-functional) closed by
- fixed: Fixed in both the daily build and the 1.6 release candidate.
- 5:14 PM Ticket #8689 (Blank Qt GUI after deiconifying on Mac) closed by
- fixed: Fixed in 1.6 and daily builds. Commenting out the graphics window …
- 4:21 PM Dev2022-3-27 edited by
- (diff)
- 4:20 PM Dev2022-3-27 edited by
- (diff)
- 3:18 PM Dev2022-3-27 created by
- 3:17 PM DeveloperMeetings edited by
- (diff)
- 3:00 PM Ticket #8735 (Add menu entry to clear file history) closed by
- fixed: Done.
- 2:59 PM Ticket #8735 (Add menu entry to clear file history) created by
- On Mar 25, 2023, at 2:25 PM, Boaz Shaanan via ChimeraX-users wrote: …
- 2:55 PM Ticket #8728 (Crash opening mmCIF/CIF) closed by
- can't reproduce: Need the GLT3-out-open00000.cif to reproduce. Looks like it died in …
- 1:59 PM Ticket #8731 (Keyboard interrupt in graphics redraw) closed by
- can't reproduce: There is no information about what went wrong in this bug report. All …
- 1:55 PM Ticket #8730 (Opening AlphaFold JSON as MOLE) closed by
- duplicate: Several months ago I improved the error message and removed the …
- 1:51 PM Ticket #8727 (AlphaFold: Downloaded prediction file not found) closed by
- can't reproduce: Would be great if we could track down the removeDockWidget() Qt crash. …
- 1:34 PM Ticket #8732 (Restore BLAST results from session: 'NoneType' object has no attribute ...) closed by
- fixed: Fixed on develop and release/v1.6
- 1:27 PM Ticket #8734 (Qscore: ValueError: min() arg is an empty sequence) created by
- […]
- 1:15 PM Ticket #8733 (Site down) closed by
- fixed: Hi Matt, Thanks for reporting this problem. The site was down this …
- 1:09 PM Ticket #8729 (Crash in to_h36) closed by
- can't reproduce: Don't see how that routine can crash
- 12:34 PM Ticket #8712 (Graphics crash, macOS 11.6.2, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash. I think the long ctypes C++ stack …
- 12:30 PM Ticket #8713 (OpenGL errors at startup) closed by
- nonchimerax: These errors starting ChimeraX are because of problems with your …
- 12:24 PM Ticket #8711 (Bug: black spots appear when saving images with a silhouette) closed by
- nonchimerax: These artifacts are a graphics driver problem. Are you on a Mac? …
- 12:03 PM Ticket #8723 (SEQCROW: cannot remove 1 hydrogens from an atom with 0 hydrogens) closed by
- duplicate: Duplicate of #8725
- 11:59 AM Ticket #8724 (SEQCROW: cannot remove 1 hydrogens from an atom with 0 hydrogens) closed by
- duplicate
- 11:51 AM Ticket #8722 (Execution of 'Structure' object's 'model_color' property raised ...) closed by
- can't reproduce: This error is from the old scheme of custom-attribute handling, which …
- 11:46 AM Ticket #8721 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 11:22 AM Ticket #8719 (Table widget: float() argument must be a string or a number, not 'NoneType') closed by
- duplicate: Hi Jitendra, Thanks for reporting this problem. It is fixed in the …
- 11:18 AM Ticket #8718 (Table widget: float() argument must be a string or a number, not 'NoneType') closed by
- duplicate
- 11:17 AM Ticket #8717 (Table widget: float() argument must be a string or a number, not 'NoneType') closed by
- duplicate: Caused by clicking on the header (i.e. sorting) for color or other …
- 11:14 AM Ticket #8716 (Crash in event loop) closed by
- can't reproduce
- 11:13 AM Ticket #8715 (Crash in event loop) closed by
- can't reproduce
- 8:31 AM Ticket #8733 (Site down) created by
- […]
- 3:02 AM Ticket #8732 (Restore BLAST results from session: 'NoneType' object has no attribute ...) created by
- […]
- 1:47 AM Ticket #8731 (Keyboard interrupt in graphics redraw) created by
- […]
Mar 26, 2023:
- 11:32 PM Ticket #8730 (Opening AlphaFold JSON as MOLE) created by
- […]
- 9:14 PM Ticket #8729 (Crash in to_h36) created by
- […]
- 4:27 PM Ticket #8728 (Crash opening mmCIF/CIF) created by
- […]
- 2:50 PM Ticket #8727 (AlphaFold: Downloaded prediction file not found) created by
- […]
- 10:23 AM Ticket #8726 (Crash showing Side View) created by
- […]
- 6:17 AM Ticket #8725 (SEQCROW: various errors) created by
- […]
- 6:08 AM Ticket #8724 (SEQCROW: cannot remove 1 hydrogens from an atom with 0 hydrogens) created by
- […]
- 6:05 AM Ticket #8723 (SEQCROW: cannot remove 1 hydrogens from an atom with 0 hydrogens) created by
- […]
- 5:06 AM Ticket #8722 (Execution of 'Structure' object's 'model_color' property raised ...) created by
- […]
Mar 25, 2023:
- 7:39 AM Ticket #8721 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 1:09 AM Ticket #8720 (Distance from centroid to atoms non-functional) created by
- […]
- 1:02 AM Ticket #8719 (Table widget: float() argument must be a string or a number, not 'NoneType') created by
- […]
- 1:02 AM Ticket #8718 (Table widget: float() argument must be a string or a number, not 'NoneType') created by
- […]
- 1:01 AM Ticket #8717 (Table widget: float() argument must be a string or a number, not 'NoneType') created by
- […]
Mar 24, 2023:
- 3:16 PM Ticket #8716 (Crash in event loop) created by
- […]
- 3:09 PM Ticket #8715 (Crash in event loop) created by
- […]
- 3:01 PM Ticket #8714 ("make install" hangs, possibly contacting RBVI servers) created by
- […]
- 1:06 PM Ticket #8713 (OpenGL errors at startup) created by
- […]
- 12:46 PM Training edited by
- (diff)
- 5:48 AM Ticket #8712 (Graphics crash, macOS 11.6.2, Intel Iris Plus Graphics) created by
- […]
- 4:12 AM Ticket #8711 (Bug: black spots appear when saving images with a silhouette) created by
- […] [[Image(...)]] hgnmhgj.tiff
Mar 23, 2023:
- 4:31 PM ChangeLog edited by
- (diff)
- 3:33 PM 2023-3-23 edited by
- (diff)
- 3:29 PM 2023-3-23 edited by
- (diff)
- 2:32 PM Ticket #8710 (Mammogram from VICTRE doesn't have correct slice ordering) created by
- 1.3.6.1.4.1.14519.5.2.1.2135.6389.190504372830918379577766684723 …
- 2:20 PM Ticket #8705 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 2:19 PM Ticket #8701 (Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 2:17 PM Ticket #8696 (Graphics crash, macOS 11.6.4, Radeon Pro Vega 56) closed by
- nonchimerax: Apple AMD graphics driver crash.
- 2:05 PM Ticket #8709 (Crash closing tool while alphafold was running) closed by
- can't reproduce
- 1:57 PM Ticket #8703 (MemoryError saving session) closed by
- limitation: Ran out of memory getting a copy of map data to be saved in a session. …
- 1:12 PM Ticket #8709 (Crash closing tool while alphafold was running) created by
- […]
- 10:43 AM Ticket #8702 (Unknown crash at startup) closed by
- can't reproduce
- 10:39 AM Ticket #8697 (Unknown crash at startup) closed by
- can't reproduce
- 10:20 AM Ticket #8694 (Crash in event loop) closed by
- can't reproduce: Hi Cesar, Thanks for reporting this problem. Unfortunately, the …
- 7:25 AM Ticket #8708 (Session save: 'PseudobondGroup' object has no attribute '_c_pointer_ref') created by
- […]
- 7:06 AM Ticket #8707 (Unknown crash) created by
- […]
- 6:26 AM Ticket #8706 (ArtiaX: arrays used as indices must be of integer (or boolean) type) created by
- […]
- 6:25 AM Ticket #8705 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics) created by
- […]
- 4:58 AM Ticket #8704 (XMAS write file: No such file or directory) created by
- […]
- 1:02 AM Ticket #8703 (MemoryError saving session) created by
- […]
- 12:25 AM Ticket #8702 (Unknown crash at startup) created by
- […]
Mar 22, 2023:
- 9:47 PM Ticket #8701 (Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics) created by
- […]
- 9:29 PM Ticket #8678 (TOML-based bundle includes more files than it should) closed by
- fixed
- 7:36 PM Ticket #8700 (Hbonds to amide H atoms don't project onto ribbon) closed by
- fixed: Fixed. Made backbone H atom project to same ribbon position as N atom.
- 7:30 PM Ticket #8700 (Hbonds to amide H atoms don't project onto ribbon) created by
- […]
- 6:45 PM Ticket #8699 (Add OpenMM ligand parameterization for tug and minimize mouse modes) closed by
- fixed: Done. In ChimeraX 1.6 and daily builds newer than March 23, 2023. If …
- 5:58 PM Ticket #8699 (Add OpenMM ligand parameterization for tug and minimize mouse modes) created by
- Currently the tug and minimize mouse modes only handle standard amino …
- 5:24 PM Ticket #8698 (Some DICOM files only appear using extreme threshold values) created by
- I've recently encountered some DICOM datasets that don't appear as …
- 2:30 PM Ticket #8697 (Unknown crash at startup) created by
- […]
- 1:19 PM Ticket #8696 (Graphics crash, macOS 11.6.4, Radeon Pro Vega 56) created by
- […]
- 12:56 PM Ticket #8695 (SEQCROW: 'Residue' object is not iterable) created by
- […]
- 11:28 AM Ticket #8657 (Show/hide map from model pane resets scroll bar) closed by
- fixed: The model list is rebuilt if a model is opened or closed or if model …
- 10:56 AM Ticket #8694 (Crash in event loop) created by
- […]
- 10:28 AM Ticket #8693 (Crash in event loop) closed by
- can't reproduce
- 9:59 AM Ticket #8692 (Crash in event loop) closed by
- can't reproduce
- 9:54 AM Ticket #8691 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 8:55 AM Ticket #8693 (Crash in event loop) created by
- […]
- 8:51 AM Ticket #8692 (Crash in event loop) created by
- […]
- 8:46 AM Ticket #8691 (Crash using File→Open on Windows and/or in return statement) created by
- […]
Mar 21, 2023:
- 10:08 PM Ticket #8690 (OpenGL accelerate diagnostic message on startup on Mac) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/bdcc0a1f658b029ab14ac7e876957b …
- 9:55 PM Ticket #8688 (TOML based bundles have stringly typed metadata) closed by
- fixed: https://github.com/RBVI/ChimeraX/commit/dc4e43d5c551cfb9de97a464633947a …
- 7:22 PM Ticket #8690 (OpenGL accelerate diagnostic message on startup on Mac) created by
- […]
- 6:50 PM Ticket #8689 (Blank Qt GUI after deiconifying on Mac) created by
- […]
- 5:18 PM Ticket #8688 (TOML based bundles have stringly typed metadata) created by
- I see that when a bundle uses TOML, variables like want_path, …
- 5:12 PM Ticket #8685 (cannot open DICOM folder) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/ec0a46f7bb77c9d4a993dbb521c707 …
- 4:37 PM Ticket #8482 (Update OpenMM to 8.0.0 for 1.6) closed by
- fixed: I was nervous for a moment because the python3.9 Linux OpenMM in the …
- 11:59 AM Ticket #8687 (Crash showing Rapid Access at startup) closed by
- can't reproduce
- 11:44 AM Ticket #8687 (Crash showing Rapid Access at startup) created by
- […]
- 11:21 AM Training edited by
- (diff)
- 11:19 AM Training edited by
- (diff)
- 10:58 AM Ticket #8665 (Error parsing DX file: map_data.readarray: could not convert string to ...) closed by
- can't reproduce: Error parsing a DX map file. Could be some file header option …
- 10:54 AM Ticket #8663 (zonesel: NumPy array is not contiguous) closed by
- duplicate: Fixed 7 weeks ago, #8377.
- 10:52 AM Ticket #8686 (SEQCROW: No module named 'send2trash') created by
- […]
- 10:50 AM Ticket #8662 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:41 AM 2023-3-23 created by
- 10:40 AM 2023-3-16 edited by
- (diff)
- 10:39 AM DeveloperMeetings edited by
- (diff)
- 10:37 AM Ticket #8683 (Crash in Qt event loop look after saving image) closed by
- can't reproduce
- 9:57 AM Ticket #8682 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 9:48 AM Ticket #8685 (cannot open DICOM folder) created by
- […]
- 4:05 AM Ticket #8684 (tool_window.manage() call required) closed by
-
not a bug: Ah - if I add:
[…]
... to the end of the
MainToolWindow… - 3:33 AM Ticket #8684 (tool_window.manage() call required) created by
- […] malformed_tool_window.png
- 2:21 AM Ticket #8683 (Crash in Qt event loop look after saving image) created by
- […]
Mar 20, 2023:
- 10:23 PM Ticket #8682 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 4:23 PM Ticket #8668 (Modeller het preserve: list index out of range) closed by
- can't reproduce: Despite my best efforts, I cannot reproduce this.
- 3:51 PM Ticket #8673 (Crash in garbage collection) closed by
- fixed: Fix: …
- 2:05 PM Ticket #8658 ('PickedPseudobond' object has no attribute 'group') closed by
- fixed
- 12:20 PM Ticket #8666 ('PasswordDialog' object has no attribute 'exec_') closed by
- fixed: This has since been fixed in the 1.6 daily build.
- 11:59 AM Ticket #8681 (Crash in garbage collection) closed by
- duplicate: Again, 'close' with a big structure. Okay, I am definitely changing …
- 11:57 AM Ticket #8680 (Trac: Database is malformed) closed by
- can't reproduce: Seems to have been a temporary problem. Thanks for reporting it anyway.
- 11:52 AM Ticket #8677 (XMAS: crash in ~QGridLayout()) closed by
- duplicate
- 11:49 AM Ticket #8676 (Crash In event loop at startup) closed by
- can't reproduce
- 11:48 AM Ticket #8679 (Update OpenMM) closed by
- duplicate: I'll upload this to Plato. Copied your request into #8482 to continue …
- 11:42 AM Ticket #8674 (XMAS: crash in ~QGridLayout()) closed by
- duplicate: Will be fixed whenever the changes suggested in …
- 11:27 AM Ticket #8672 (Restore new session in old ChimeraX) closed by
- limitation
- 11:25 AM Ticket #7977 (DICOM: SEG models not aligned with CT 4) closed by
- fixed
- 11:25 AM Ticket #8671 (Crash in ctypes calling change_tracker_changed) closed by
- can't reproduce
- 11:21 AM Ticket #8670 (Unknown crash) closed by
- can't reproduce
- 11:19 AM Ticket #8669 (MatchMaker: 'NoneType' object has no attribute 'setChecked') closed by
- duplicate
- 11:12 AM Ticket #8667 (Crash in event loop) closed by
- can't reproduce
- 10:55 AM Ticket #8664 (zonesel: NumPy array is not contiguous) closed by
- duplicate
- 10:54 AM Ticket #8661 (ISOLDE: '_TriggerHandler' object has no attribute 'blocked') closed by
- fixed: I've updated the required ChimeraX-Core version to …
- 8:42 AM Ticket #8681 (Crash in garbage collection) created by
- […]
- 7:07 AM Ticket #8680 (Trac: Database is malformed) created by
- […]
- 7:04 AM Ticket #8679 (Update OpenMM) created by
- […] OpenMM-8.0.0-Linux.tgz
- 5:36 AM Ticket #8678 (TOML-based bundle includes more files than it should) created by
- […]
- 5:33 AM Ticket #8677 (XMAS: crash in ~QGridLayout()) created by
- […]
- 5:15 AM Ticket #8676 (Crash In event loop at startup) created by
- […]
- 4:52 AM Ticket #8675 (XMAS: making crosslinks: Duplicate names are not allowed) created by
- […]
- 4:02 AM Ticket #8674 (XMAS: crash in ~QGridLayout()) created by
- […]
- 2:31 AM Ticket #8673 (Crash in garbage collection) created by
- […]
Mar 19, 2023:
Mar 18, 2023:
- 2:51 PM Ticket #8671 (Crash in ctypes calling change_tracker_changed) created by
- […]
- 12:25 PM Ticket #8670 (Unknown crash) created by
- […]
- 2:36 AM Ticket #8669 (MatchMaker: 'NoneType' object has no attribute 'setChecked') created by
- […]
- 12:37 AM Ticket #8668 (Modeller het preserve: list index out of range) created by
- […]
Mar 17, 2023:
- 2:38 PM Ticket #8667 (Crash in event loop) created by
- […]
- 2:33 PM Ticket #3634 (Test VR with Oculus Quest) closed by
- fixed: Have been using ChimeraX VR with Quest 2 for a couple years now and …
- 2:08 PM Ticket #8666 ('PasswordDialog' object has no attribute 'exec_') created by
- […]
- 12:16 PM Ticket #8665 (Error parsing DX file: map_data.readarray: could not convert string to ...) created by
- […]
- 10:53 AM Ticket #8641 (Remove Pandas from distribution if not used) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/4dcc30a1e22320e5f90b6f03454f8b …
- 1:23 AM Ticket #8664 (zonesel: NumPy array is not contiguous) created by
- […]
- 1:23 AM Ticket #8663 (zonesel: NumPy array is not contiguous) created by
- […]
- 1:20 AM Ticket #8662 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics) created by
- […]
Mar 16, 2023:
- 11:27 PM Ticket #8661 (ISOLDE: '_TriggerHandler' object has no attribute 'blocked') created by
- […]
- 3:45 PM Ticket #8659 (Windows daily build fails due to signing problem: "SignTool Error: No ...) closed by
- fixed: The Windows Certificate Manager did not have the current signing …
- 3:07 PM Ticket #8105 (ChimeraX/lib not on library path) closed by
- fixed: I found it! On Rocky, the executable in /usr/bin is a symbolic link to …
- 3:03 PM Ticket #8660 (Use equivalent of realpath(sys.executable) in launcher) created by
- Many areas of ChimeraX code depend on accurately knowing where the …
- 2:18 PM Ticket #8659 (Windows daily build fails due to signing problem: "SignTool Error: No ...) created by
- Windows daily build failed in the same way the last two nights. Maybe …
- 2:09 PM NIAID2022 edited by
- (diff)
- 2:07 PM NIAID2022 edited by
- (diff)
- 1:51 PM NIAID2022 edited by
- (diff)
- 12:52 PM Ticket #8656 (Crash showing open dialog) closed by
- can't reproduce
- 11:17 AM Ticket #8658 ('PickedPseudobond' object has no attribute 'group') created by
- […]
- 10:48 AM Ticket #8657 (Show/hide map from model pane resets scroll bar) created by
- […]
- 7:10 AM Ticket #8656 (Crash showing open dialog) created by
- […]
Mar 15, 2023:
- 2:07 PM phenix-3-16-23 edited by
- (diff)
- 2:05 PM phenix-3-16-23 edited by
- (diff)
- 1:33 PM phenix-3-16-23 edited by
- (diff)
- 1:32 PM phenix-3-16-23 edited by
- (diff)
- 1:31 PM phenix-3-16-23 edited by
- (diff)
- 1:11 PM phenix-3-16-23 created by
- 1:10 PM Features edited by
- (diff)
- 12:46 PM Ticket #8654 (Crash saving PNG) closed by
- duplicate: Duplicate. Only seen with ChimeraX 1.3, only Linux 3.10.
- 12:00 PM Ticket #8655 (Crash in fork at startup) closed by
- can't reproduce: Don't know what would fork at startup…
- 11:43 AM Ticket #8655 (Crash in fork at startup) created by
- […]
- 11:29 AM Ticket #8653 (Add Charges: Unknown class for change tracking: FakeAtom) closed by
- duplicate
- 11:26 AM Ticket #8652 (Crash in multishadow) closed by
- nonchimerax: ChimeraX crashed in your graphics driver. This is very likely a …
- 11:18 AM Ticket #8651 (ISOLDE: wrapped C/C++ object of type QTableWidget has been deleted) closed by
- duplicate: GUI has been reimplemented
- 11:11 AM Ticket #8650 (UniProt fetch: list index out of range) closed by
- duplicate
- 8:18 AM Ticket #8654 (Crash saving PNG) created by
- […]
- 7:57 AM Ticket #8653 (Add Charges: Unknown class for change tracking: FakeAtom) created by
- […]
- 7:56 AM Ticket #8652 (Crash in multishadow) created by
- […]
- 3:53 AM Ticket #8651 (ISOLDE: wrapped C/C++ object of type QTableWidget has been deleted) created by
- […]
Mar 14, 2023:
- 8:04 PM Ticket #8650 (UniProt fetch: list index out of range) created by
- […]
- 12:44 PM Ticket #8649 (MD Viewer: self.atomLocation[0]: list index out of range) created by
- […]
- 11:15 AM Dev2022-3-13 edited by
- (diff)
- 11:14 AM Dev2022-3-13 edited by
- (diff)
- 11:04 AM Ticket #8648 (Crash in event loop) closed by
- can't reproduce
- 11:02 AM Ticket #8647 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:38 AM Ticket #8643 (Graphics crash, macOS 12.5, Intel HD Graphics 615) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:36 AM Ticket #8644 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) closed by
- duplicate
- 10:32 AM Ticket #8642 (mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') closed by
- duplicate: Hi Haaris, This bug was fixed in the 1.5 production release, so if …
- 10:20 AM Ticket #8640 (Crash clearing aniso_u6) closed by
- duplicate
- 10:16 AM Ticket #8639 (Crash in event loop) closed by
- can't reproduce
- 9:38 AM Ticket #8499 (Collate details about DICOM collections from series) closed by
- fixed
- 9:38 AM Ticket #8499 (Collate details about DICOM collections from series) reopened by
- 9:37 AM Ticket #8499 (Collate details about DICOM collections from series) closed by
- I have this working, but it's slow to download. Each collection (there …
- 7:59 AM Ticket #8648 (Crash in event loop) created by
- […]
- 7:56 AM Ticket #8647 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 5:58 AM Ticket #8646 (Map-fit scoring) created by
- […]
- 5:20 AM Ticket #8645 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 4:22 AM Ticket #8644 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) created by
- […]
- 3:28 AM Ticket #8643 (Graphics crash, macOS 12.5, Intel HD Graphics 615) created by
- […]
- 1:23 AM Ticket #8629 (Write mmCIF: 'NoneType' object has no attribute 'get') closed by
- fixed: Fixed bug when writing mmCIF if authoritative sequence information is …
- 1:21 AM Ticket #8642 (mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') created by
- […]
Mar 13, 2023:
- 5:50 PM Ticket #8626 (Automatically use Nucleic matrix when needed) closed by
- fixed: Smarter now. :-)
- 5:15 PM Ticket #8453 (Associate Download DICOM entries with corresponding TCIA webpage) closed by
- fixed: This should start working …
- 4:28 PM Dev2022-3-13 edited by
- (diff)
- 4:04 PM Ticket #8641 (Remove Pandas from distribution if not used) created by
- The ChimeraX distributions increased in size about 10% about a month …
- 3:50 PM Ticket #8640 (Crash clearing aniso_u6) created by
- […]
- 3:29 PM Ticket #8639 (Crash in event loop) created by
- […]
- 2:49 PM Ticket #8638 (libzmq is Intel only) closed by
- fixed
- 11:43 AM Ticket #8638 (libzmq is Intel only) created by
- […]
- 11:39 AM 2023-3-16 created by
- 11:37 AM Dev2022-3-13 created by
- 11:36 AM Dev2022-2-20 edited by
- (diff)
- 11:36 AM DeveloperMeetings edited by
- (diff)
- 11:34 AM Ticket #8633 (Fit in Map: Device not configured) closed by
- not a bug: User tried to use fit in map which tried to load the map at full …
- 11:21 AM Ticket #8637 (Crash clearing aniso_u6) closed by
- duplicate
- 11:20 AM Ticket #8636 (Crash clearing aniso_u6) closed by
- duplicate
- 11:19 AM Ticket #8635 (Crash showing tooltip (on non-existent screen?)) closed by
- can't reproduce
- 11:00 AM Ticket #8634 (Sequence viewer: row is None) closed by
- duplicate
- 10:54 AM Ticket #8632 (Crash in event loop after AlphaFold prediction) closed by
- can't reproduce
- 10:50 AM Ticket #8631 (wrapped C/C++ object of type QScreen has been deleted) closed by
- duplicate
- 10:48 AM Ticket #8630 (Crash in event loop) closed by
- can't reproduce
- 10:44 AM Ticket #8628 (FindHBond: More than 2 coplanar positions specified) closed by
- not a bug: Bad connectivity
- 10:14 AM Ticket #8637 (Crash clearing aniso_u6) created by
- […]
- 9:55 AM Ticket #8636 (Crash clearing aniso_u6) created by
- […]
- 1:48 AM Ticket #8635 (Crash showing tooltip (on non-existent screen?)) created by
- […]
Mar 11, 2023:
- 8:22 AM Ticket #8634 (Sequence viewer: row is None) created by
- […]
- 6:44 AM Ticket #8633 (Fit in Map: Device not configured) created by
- […]
Mar 11, 2023:
- 6:49 PM Ticket #8632 (Crash in event loop after AlphaFold prediction) created by
- […]
- 4:34 PM Ticket #8631 (wrapped C/C++ object of type QScreen has been deleted) created by
- […]
Mar 10, 2023:
- 7:23 PM Ticket #8630 (Crash in event loop) created by
- […]
- 5:33 PM Ticket #8621 (Have to change step to get NRRD images to render at the right size) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/ef17a9db44d1f30724e7c15b2c86fc …
- 10:37 AM Ticket #8578 (Haphazard tool tips) closed by
- can't reproduce: Reopen if you find a reproducible test case or additional clues.
- 9:27 AM Ticket #8629 (Write mmCIF: 'NoneType' object has no attribute 'get') created by
- […] Screenshot 2023-03-10 at 12.27.09 PM.png
- 6:36 AM Ticket #8628 (FindHBond: More than 2 coplanar positions specified) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
