Opened 3 years ago
Closed 3 years ago
#8671 closed defect (can't reproduce)
Crash in ctypes calling change_tracker_changed
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error
Current thread 0x00007ff859a0b680 (most recent call first):
File "/private/var/folders/6c/bnq9f2r17696s6077t1w4fzr0000gn/T/AppTranslocation/54105E0A-885C-41C8-B28C-8C2B4350E238/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/molobject.py", line 2128 in changed
File "/private/var/folders/6c/bnq9f2r17696s6077t1w4fzr0000gn/T/AppTranslocation/54105E0A-885C-41C8-B28C-8C2B4350E238/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/changes.py", line 20 in check_for_changes
File "/private/var/folders/6c/bnq9f2r17696s6077t1w4fzr0000gn/T/AppTranslocation/54105E0A-885C-41C8-B28C-8C2B4350E238/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 58 in draw_new_frame
File "/private/var/folders/6c/bnq9f2r17696s6077t1w4fzr0000gn/T/AppTranslocation/54105E0A-885C-41C8-B28C-8C2B4350E238/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
File "/private/var/folders/6c/bnq9f2r17696s6077t1w4fzr0000gn/T/AppTranslocation/54105E0A-885C-41C8-B28C-8C2B4350E238/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 283 in event_loop
File "/private/var/folders/6c/bnq9f2r17696s6077t1w4fzr0000gn/T/AppTranslocation/54105E0A-885C-41C8-B28C-8C2B4350E238/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 884 in init
File "/private/var/folders/6c/bnq9f2r17696s6077t1w4fzr0000gn/T/AppTranslocation/54105E0A-885C-41C8-B28C-8C2B4350E238/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1035 in
File "/private/var/folders/6c/bnq9f2r17696s6077t1w4fzr0000gn/T/AppTranslocation/54105E0A-885C-41C8-B28C-8C2B4350E238/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/private/var/folders/6c/bnq9f2r17696s6077t1w4fzr0000gn/T/AppTranslocation/54105E0A-885C-41C8-B28C-8C2B4350E238/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
{"app_name":"ChimeraX","timestamp":"2023-03-18 17:37:45.00 -0400","app_version":"","slice_uuid":"5df621ee-554e-36a8-b448-93b2334e5480","build_version":"","platform":1,"share_with_app_devs":1,"is_first_party":1,"bug_type":"309","os_version":"macOS 13.2.1 (22D68)","roots_installed":0,"incident_id":"23F79AEA-934F-4DE2-9603-A48298741AA1","name":"ChimeraX"}
{
"uptime" : 3700,
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro14,3",
"coalitionID" : 1852,
"osVersion" : {
"train" : "macOS 13.2.1",
"build" : "22D68",
"releaseType" : "User"
},
"captureTime" : "2023-03-18 17:37:44.5735 -0400",
"incident" : "23F79AEA-934F-4DE2-9603-A48298741AA1",
"pid" : 5289,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2023-03-18 17:37:08.4055 -0400",
"procStartAbsTime" : 3707635092575,
"procExitAbsTime" : 3743781527713,
"procName" : "ChimeraX",
"procPath" : "\/private\/var\/folders\/*\/ChimeraX-1.5.app\/Contents\/MacOS\/ChimeraX",
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "3F956437-33EF-145B-5828-80A116D73BE4",
"throttleTimeout" : 2147483647,
"wakeTime" : 1519,
"bridgeVersion" : {"build":"14Y910","train":"3.0"},
"sleepWakeUUID" : "8CE0D3EA-3A03-4336-ABAB-E54CD68F6C69",
"sip" : "enabled",
"vmRegionInfo" : "0x119f677c0 is in 0x119f52000-0x119f86000; bytes after start: 88000 bytes before end: 124991\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n mapped file 119f0e000-119f52000 [ 272K] r--\/rwx SM=COW ...t_id=b09cd68f\n---> mapped file 119f52000-119f86000 [ 208K] r-x\/rwx SM=COW ...t_id=af4fa78f\n mapped file 119f86000-119f88000 [ 8K] rw-\/rwx SM=COW ...t_id=b0707c8f",
"exception" : {"codes":"0x000000000000000a, 0x0000000119f677c0","rawCodes":[10,4730550208],"type":"EXC_BAD_ACCESS","signal":"SIGBUS","subtype":"KERN_MEMORY_ERROR at 0x0000000119f677c0"},
"ktriageinfo" : "VM - Object has no pager\n",
"vmregioninfo" : "0x119f677c0 is in 0x119f52000-0x119f86000; bytes after start: 88000 bytes before end: 124991\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n mapped file 119f0e000-119f52000 [ 272K] r--\/rwx SM=COW ...t_id=b09cd68f\n---> mapped file 119f52000-119f86000 [ 208K] r-x\/rwx SM=COW ...t_id=af4fa78f\n mapped file 119f86000-119f88000 [ 8K] rw-\/rwx SM=COW ...t_id=b0707c8f",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : [{"triggered":true,"id":81499,"name":"CrBrowserMain","threadState":{"r13":{"value":140701961622928},"rax":{"value":0},"rflags":{"value":582},"cpu":{"value":0},"r14":{"value":10},"rsi":{"value":10},"r8":{"value":140320972300104},"cr2":{"value":140320972300104},"rdx":{"value":0},"r10":{"value":140704632321664,"symbolLocation":0,"symbol":"_main_thread"},"r9":{"value":11586699228194179465},"r15":{"value":22},"rbx":{"value":140704632321664,"symbolLocation":0,"symbol":"_main_thread"},"trap":{"value":133},"err":{"value":33554760},"r11":{"value":582},"rip":{"value":140703498330666,"matchesCrashFrame":1},"rbp":{"value":140320972298880},"rsp":{"value":140320972298840},"r12":{"value":259},"rcx":{"value":140320972298840},"flavor":"x86_THREAD_STATE","rdi":{"value":259}},"frames":[{"imageOffset":140703498330666,"imageIndex":0},{"imageOffset":140703497561216,"imageIndex":0},{"imageOffset":140703498734621,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":140701961622944,"imageIndex":0}]},{"id":81555,"frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4507558463,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81556,"frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4507558463,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81557,"frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4507558463,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81721,"frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4856895247,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81722,"frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4856895247,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81723,"frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4856895247,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81941,"name":"ThreadPoolServiceThread","frames":[{"imageOffset":140703498341998,"imageIndex":0},{"imageOffset":5082999079,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082501805,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81942,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082552255,"imageIndex":0},{"imageOffset":5082554988,"imageIndex":0},{"imageOffset":5082553965,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81943,"name":"ThreadPoolBackgroundWorker","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082552255,"imageIndex":0},{"imageOffset":5082554988,"imageIndex":0},{"imageOffset":5082553821,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81944,"name":"Chrome_IOThread","frames":[{"imageOffset":140703498341998,"imageIndex":0},{"imageOffset":5082999079,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5064930210,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81945,"name":"NetworkConfigWatcher","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082794991,"imageIndex":0},{"imageOffset":5081965001,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81946,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082552255,"imageIndex":0},{"imageOffset":5082554988,"imageIndex":0},{"imageOffset":5082553965,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81947,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082552255,"imageIndex":0},{"imageOffset":5082554988,"imageIndex":0},{"imageOffset":5082553965,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81948,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082552255,"imageIndex":0},{"imageOffset":5082554988,"imageIndex":0},{"imageOffset":5082553965,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81949,"name":"CompositorTileWorker1","frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":5082762523,"imageIndex":0},{"imageOffset":5117159725,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81950,"name":"Chrome_InProcGpuThread","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082794991,"imageIndex":0},{"imageOffset":5081965001,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81951,"name":"Chrome_ChildIOThread","frames":[{"imageOffset":140703498341998,"imageIndex":0},{"imageOffset":5082999079,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81952,"name":"NetworkConfigWatcher","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082794991,"imageIndex":0},{"imageOffset":5081965001,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81953,"name":"VizCompositorThread","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082794991,"imageIndex":0},{"imageOffset":5081965001,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81966,"name":"NetworkService","frames":[{"imageOffset":140703498341998,"imageIndex":0},{"imageOffset":5082999079,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81967,"name":"NetworkConfigWatcher","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082794991,"imageIndex":0},{"imageOffset":5081965001,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81968,"name":"ThreadPoolSingleThreadForegroundBlocking0","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082552255,"imageIndex":0},{"imageOffset":5082554988,"imageIndex":0},{"imageOffset":5082554061,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":82061,"frames":[{"imageOffset":140703498542168,"imageIndex":0}]},{"id":82065,"name":"Thread (pooled)","frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4486642678,"imageIndex":0},{"imageOffset":4486641934,"imageIndex":0},{"imageOffset":4486641758,"imageIndex":0},{"imageOffset":4486618439,"imageIndex":0},{"imageOffset":4486600291,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":82066,"name":"Thread (pooled)","frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4486642678,"imageIndex":0},{"imageOffset":4486641934,"imageIndex":0},{"imageOffset":4486641758,"imageIndex":0},{"imageOffset":4486618439,"imageIndex":0},{"imageOffset":4486600291,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":82067,"name":"Thread (pooled)","frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4486642678,"imageIndex":0},{"imageOffset":4486641934,"imageIndex":0},{"imageOffset":4486641758,"imageIndex":0},{"imageOffset":4486618439,"imageIndex":0},{"imageOffset":4486600291,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":82068,"name":"Thread (pooled)","frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4486642678,"imageIndex":0},{"imageOffset":4486641934,"imageIndex":0},{"imageOffset":4486641758,"imageIndex":0},{"imageOffset":4486618439,"imageIndex":0},{"imageOffset":4486600291,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":82085,"name":"NetworkConfigWatcher","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082794991,"imageIndex":0},{"imageOffset":5081965001,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":82091,"frames":[{"imageOffset":140703498542168,"imageIndex":0}]},{"id":82092,"frames":[{"imageOffset":140703498542168,"imageIndex":0}]},{"id":82097,"name":"com.apple.NSEventThread","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":140703499459774,"imageIndex":0},{"imageOffset":140703499454250,"imageIndex":0},{"imageOffset":140703499451232,"imageIndex":0},{"imageOffset":140703552606585,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":82098,"name":"ThreadPoolBackgroundWorker","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082552255,"imageIndex":0},{"imageOffset":5082554988,"imageIndex":0},{"imageOffset":5082553821,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":82104,"name":"MemoryInfra","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082794991,"imageIndex":0},{"imageOffset":5081965001,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":82105,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking1","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082552255,"imageIndex":0},{"imageOffset":5082554266,"imageIndex":0},{"imageOffset":5082553869,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]}],
"usedImages" : [
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
}
],
"vmSummary" : "ReadOnly portion of Libraries: Total=182.4M resident=0K(0%) swapped_out_or_unallocated=182.4M(100%)\nWritable regions: Total=1.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.2G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 128K 1 \nActivity Tracing 256K 1 \nCG backing stores 2528K 4 \nCG image 104K 7 \nColorSync 236K 27 \nCoreAnimation 72K 10 \nCoreGraphics 12K 2 \nCoreUI image data 2640K 18 \nFoundation 16K 1 \nKernel Alloc Once 8K 1 \nMALLOC 563.9M 768 \nMALLOC guard page 32K 8 \nMALLOC_LARGE (reserved) 256K 1 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)\nMach message 16K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 136K 34 \nStack 175.3M 35 \nStack Guard 56.0M 1 \nVM_ALLOCATE 117.9M 112 \nVM_ALLOCATE (reserved) 128.0M 5 reserved VM address space (unallocated)\n__DATA 11K 1 \n__DATA_CONST 20K 1 \n__DATA_DIRTY 7K 1 \n__LINKEDIT 181.8M 1 \n__TEXT 596K 1 \ndyld private memory 512K 3 \nmapped file 537.4M 622 \nshared memory 8664K 46 \n=========== ======= ======= \nTOTAL 2.0G 1720 \nTOTAL, minus reserved VM space 1.6G 1720 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain"
}
},
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "62b4513af75dc926494899c6",
"factorPackIds" : {
"COREOS_ICD" : "62fbe3cfa9a700130f60b3ea"
},
"deploymentId" : 240000019
},
{
"rolloutId" : "60f8ddccefea4203d95cbeef",
"factorPackIds" : {
},
"deploymentId" : 240000025
}
],
"experiments" : [
]
},
"reportNotes" : [
"dyld_process_snapshot_create_for_process failed with 5"
]
}
===== Log before crash start =====
Startup Messages
---
warnings | Unable to find icon for toolbar provider 'Dump Bead Data' in bundle
'ChimeraX-GenomeTools'
Unable to find icon for toolbar provider 'Highlight' in bundle 'ChimeraX-
GenomeTools'
Unable to find icon for toolbar provider 'Bed Models' in bundle 'ChimeraX-
GenomeTools'
Unable to find icon for toolbar provider 'Bead Overlap' in bundle 'ChimeraX-
GenomeTools'
Unable to find icon for toolbar provider 'Genome Distance' in bundle
'ChimeraX-GenomeTools'
1 messages similar to the above omitted
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/jamisonlaw/Library/CloudStorage/OneDrive-
> TheOhioStateUniversity/OSBP/Bell/Data/Synchrotron/refmac8-KZ.pdb format pdb
refmac8-KZ.pdb title:
Salmonella typhimurium LT2 At 2.12 A Re [more info...]
Chain information for refmac8-KZ.pdb #1
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
Non-standard residues in refmac8-KZ.pdb #1
---
MG — (MG)
===== Log before crash end =====
Log:
Startup Messages
---
warnings | Unable to find icon for toolbar provider 'Dump Bead Data' in bundle
'ChimeraX-GenomeTools'
Unable to find icon for toolbar provider 'Highlight' in bundle 'ChimeraX-
GenomeTools'
Unable to find icon for toolbar provider 'Bed Models' in bundle 'ChimeraX-
GenomeTools'
Unable to find icon for toolbar provider 'Bead Overlap' in bundle 'ChimeraX-
GenomeTools'
Unable to find icon for toolbar provider 'Genome Distance' in bundle
'ChimeraX-GenomeTools'
1 messages similar to the above omitted
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-4.9.51
OpenGL renderer: AMD Radeon Pro 555 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro14,3
Processor Name: Quad-Core Intel Core i7
Processor Speed: 2.8 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 499.40.2.0.0
OS Loader Version: 564.40.4~66
SMC Version (system): 2.45f5
Software:
System Software Overview:
System Version: macOS 13.2.1 (22D68)
Kernel Version: Darwin 22.3.0
Time since boot: 2 hours, 8 minutes
Graphics/Displays:
Intel HD Graphics 630:
Chipset Model: Intel HD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x591b
Revision ID: 0x0004
Automatic Graphics Switching: Supported
gMux Version: 4.0.29 [3.2.8]
Metal Support: Metal 3
Radeon Pro 555:
Chipset Model: Radeon Pro 555
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 2 GB
Vendor: AMD (0x1002)
Device ID: 0x67ef
Revision ID: 0x00c7
ROM Revision: 113-C980AJ-927
VBIOS Version: 113-C9801AP-A02
EFI Driver Version: 01.A0.927
Automatic Graphics Switching: Supported
gMux Version: 4.0.29 [3.2.8]
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2880 x 1800 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.1.0
Babel: 2.11.0
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.4
ChimeraX-AddH: 2.1.3
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.6
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-ArtiaX: 0.3
ChimeraX-Atomic: 1.41.5
ChimeraX-AtomicLibrary: 8.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.19.0
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.4
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.5
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-Cytoscape: 0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-DevelExtras: 0.4.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-GenomeTools: 0.9
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.5
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-NIHPresets: 1.1.9
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.1
ChimeraX-OpenCommands: 1.0
ChimeraX-PDB: 2.6.8
ChimeraX-PDBBio: 1.0
ChimeraX-PDBImages: 1.1
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PhenixUI: 1.1.7
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RIBFIND: 0.2
ChimeraX-RMF: 0.13
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.7.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StarMap: 1.1.70
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-StrudelScore: 0.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-TestManager: 0.3
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.24.3
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-XMAS: 1.1.2
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.4
decorator: 5.1.1
docutils: 0.19
entrypoints: 0.4
executing: 1.2.0
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.7.31
imagesize: 1.4.1
importlib-metadata: 5.1.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 5.1.0
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
MolecularDynamicsViewer: 1.4
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.4
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
platformdirs: 2.5.4
prompt-toolkit: 3.0.33
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.6
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
SEQCROW: 1.6.1
setuptools: 65.1.1
setuptools-scm: 7.0.5
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
typing-extensions: 4.4.0
urllib3: 1.26.13
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.11.0
Change History (2)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in ctypes calling change_tracker_changed |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
Note:
See TracTickets
for help on using tickets.