Opened 3 years ago
Closed 3 years ago
#8671 closed defect (can't reproduce)
Crash in ctypes calling change_tracker_changed
Reported by: | Owned by: | pett | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Core | Version: | |
Keywords: | Cc: | Tom Goddard | |
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Bus error Current thread 0x00007ff859a0b680 (most recent call first): File "/private/var/folders/6c/bnq9f2r17696s6077t1w4fzr0000gn/T/AppTranslocation/54105E0A-885C-41C8-B28C-8C2B4350E238/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/molobject.py", line 2128 in changed File "/private/var/folders/6c/bnq9f2r17696s6077t1w4fzr0000gn/T/AppTranslocation/54105E0A-885C-41C8-B28C-8C2B4350E238/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/changes.py", line 20 in check_for_changes File "/private/var/folders/6c/bnq9f2r17696s6077t1w4fzr0000gn/T/AppTranslocation/54105E0A-885C-41C8-B28C-8C2B4350E238/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 58 in draw_new_frame File "/private/var/folders/6c/bnq9f2r17696s6077t1w4fzr0000gn/T/AppTranslocation/54105E0A-885C-41C8-B28C-8C2B4350E238/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback File "/private/var/folders/6c/bnq9f2r17696s6077t1w4fzr0000gn/T/AppTranslocation/54105E0A-885C-41C8-B28C-8C2B4350E238/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 283 in event_loop File "/private/var/folders/6c/bnq9f2r17696s6077t1w4fzr0000gn/T/AppTranslocation/54105E0A-885C-41C8-B28C-8C2B4350E238/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 884 in init File "/private/var/folders/6c/bnq9f2r17696s6077t1w4fzr0000gn/T/AppTranslocation/54105E0A-885C-41C8-B28C-8C2B4350E238/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1035 in File "/private/var/folders/6c/bnq9f2r17696s6077t1w4fzr0000gn/T/AppTranslocation/54105E0A-885C-41C8-B28C-8C2B4350E238/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code File "/private/var/folders/6c/bnq9f2r17696s6077t1w4fzr0000gn/T/AppTranslocation/54105E0A-885C-41C8-B28C-8C2B4350E238/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main {"app_name":"ChimeraX","timestamp":"2023-03-18 17:37:45.00 -0400","app_version":"","slice_uuid":"5df621ee-554e-36a8-b448-93b2334e5480","build_version":"","platform":1,"share_with_app_devs":1,"is_first_party":1,"bug_type":"309","os_version":"macOS 13.2.1 (22D68)","roots_installed":0,"incident_id":"23F79AEA-934F-4DE2-9603-A48298741AA1","name":"ChimeraX"} { "uptime" : 3700, "procRole" : "Foreground", "version" : 2, "userID" : 501, "deployVersion" : 210, "modelCode" : "MacBookPro14,3", "coalitionID" : 1852, "osVersion" : { "train" : "macOS 13.2.1", "build" : "22D68", "releaseType" : "User" }, "captureTime" : "2023-03-18 17:37:44.5735 -0400", "incident" : "23F79AEA-934F-4DE2-9603-A48298741AA1", "pid" : 5289, "cpuType" : "X86-64", "roots_installed" : 0, "bug_type" : "309", "procLaunch" : "2023-03-18 17:37:08.4055 -0400", "procStartAbsTime" : 3707635092575, "procExitAbsTime" : 3743781527713, "procName" : "ChimeraX", "procPath" : "\/private\/var\/folders\/*\/ChimeraX-1.5.app\/Contents\/MacOS\/ChimeraX", "parentProc" : "launchd", "parentPid" : 1, "coalitionName" : "edu.ucsf.cgl.ChimeraX", "crashReporterKey" : "3F956437-33EF-145B-5828-80A116D73BE4", "throttleTimeout" : 2147483647, "wakeTime" : 1519, "bridgeVersion" : {"build":"14Y910","train":"3.0"}, "sleepWakeUUID" : "8CE0D3EA-3A03-4336-ABAB-E54CD68F6C69", "sip" : "enabled", "vmRegionInfo" : "0x119f677c0 is in 0x119f52000-0x119f86000; bytes after start: 88000 bytes before end: 124991\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n mapped file 119f0e000-119f52000 [ 272K] r--\/rwx SM=COW ...t_id=b09cd68f\n---> mapped file 119f52000-119f86000 [ 208K] r-x\/rwx SM=COW ...t_id=af4fa78f\n mapped file 119f86000-119f88000 [ 8K] rw-\/rwx SM=COW ...t_id=b0707c8f", "exception" : {"codes":"0x000000000000000a, 0x0000000119f677c0","rawCodes":[10,4730550208],"type":"EXC_BAD_ACCESS","signal":"SIGBUS","subtype":"KERN_MEMORY_ERROR at 0x0000000119f677c0"}, "ktriageinfo" : "VM - Object has no pager\n", "vmregioninfo" : "0x119f677c0 is in 0x119f52000-0x119f86000; bytes after start: 88000 bytes before end: 124991\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n mapped file 119f0e000-119f52000 [ 272K] r--\/rwx SM=COW ...t_id=b09cd68f\n---> mapped file 119f52000-119f86000 [ 208K] r-x\/rwx SM=COW ...t_id=af4fa78f\n mapped file 119f86000-119f88000 [ 8K] rw-\/rwx SM=COW ...t_id=b0707c8f", "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0}, "faultingThread" : 0, "threads" : [{"triggered":true,"id":81499,"name":"CrBrowserMain","threadState":{"r13":{"value":140701961622928},"rax":{"value":0},"rflags":{"value":582},"cpu":{"value":0},"r14":{"value":10},"rsi":{"value":10},"r8":{"value":140320972300104},"cr2":{"value":140320972300104},"rdx":{"value":0},"r10":{"value":140704632321664,"symbolLocation":0,"symbol":"_main_thread"},"r9":{"value":11586699228194179465},"r15":{"value":22},"rbx":{"value":140704632321664,"symbolLocation":0,"symbol":"_main_thread"},"trap":{"value":133},"err":{"value":33554760},"r11":{"value":582},"rip":{"value":140703498330666,"matchesCrashFrame":1},"rbp":{"value":140320972298880},"rsp":{"value":140320972298840},"r12":{"value":259},"rcx":{"value":140320972298840},"flavor":"x86_THREAD_STATE","rdi":{"value":259}},"frames":[{"imageOffset":140703498330666,"imageIndex":0},{"imageOffset":140703497561216,"imageIndex":0},{"imageOffset":140703498734621,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":140701961622944,"imageIndex":0}]},{"id":81555,"frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4507558463,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81556,"frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4507558463,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81557,"frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4507558463,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81721,"frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4856895247,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81722,"frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4856895247,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81723,"frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4856895247,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81941,"name":"ThreadPoolServiceThread","frames":[{"imageOffset":140703498341998,"imageIndex":0},{"imageOffset":5082999079,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082501805,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81942,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082552255,"imageIndex":0},{"imageOffset":5082554988,"imageIndex":0},{"imageOffset":5082553965,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81943,"name":"ThreadPoolBackgroundWorker","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082552255,"imageIndex":0},{"imageOffset":5082554988,"imageIndex":0},{"imageOffset":5082553821,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81944,"name":"Chrome_IOThread","frames":[{"imageOffset":140703498341998,"imageIndex":0},{"imageOffset":5082999079,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5064930210,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81945,"name":"NetworkConfigWatcher","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082794991,"imageIndex":0},{"imageOffset":5081965001,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81946,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082552255,"imageIndex":0},{"imageOffset":5082554988,"imageIndex":0},{"imageOffset":5082553965,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81947,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082552255,"imageIndex":0},{"imageOffset":5082554988,"imageIndex":0},{"imageOffset":5082553965,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81948,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082552255,"imageIndex":0},{"imageOffset":5082554988,"imageIndex":0},{"imageOffset":5082553965,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81949,"name":"CompositorTileWorker1","frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":5082762523,"imageIndex":0},{"imageOffset":5117159725,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81950,"name":"Chrome_InProcGpuThread","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082794991,"imageIndex":0},{"imageOffset":5081965001,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81951,"name":"Chrome_ChildIOThread","frames":[{"imageOffset":140703498341998,"imageIndex":0},{"imageOffset":5082999079,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81952,"name":"NetworkConfigWatcher","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082794991,"imageIndex":0},{"imageOffset":5081965001,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81953,"name":"VizCompositorThread","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082794991,"imageIndex":0},{"imageOffset":5081965001,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81966,"name":"NetworkService","frames":[{"imageOffset":140703498341998,"imageIndex":0},{"imageOffset":5082999079,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81967,"name":"NetworkConfigWatcher","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082794991,"imageIndex":0},{"imageOffset":5081965001,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":81968,"name":"ThreadPoolSingleThreadForegroundBlocking0","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082552255,"imageIndex":0},{"imageOffset":5082554988,"imageIndex":0},{"imageOffset":5082554061,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":82061,"frames":[{"imageOffset":140703498542168,"imageIndex":0}]},{"id":82065,"name":"Thread (pooled)","frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4486642678,"imageIndex":0},{"imageOffset":4486641934,"imageIndex":0},{"imageOffset":4486641758,"imageIndex":0},{"imageOffset":4486618439,"imageIndex":0},{"imageOffset":4486600291,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":82066,"name":"Thread (pooled)","frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4486642678,"imageIndex":0},{"imageOffset":4486641934,"imageIndex":0},{"imageOffset":4486641758,"imageIndex":0},{"imageOffset":4486618439,"imageIndex":0},{"imageOffset":4486600291,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":82067,"name":"Thread (pooled)","frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4486642678,"imageIndex":0},{"imageOffset":4486641934,"imageIndex":0},{"imageOffset":4486641758,"imageIndex":0},{"imageOffset":4486618439,"imageIndex":0},{"imageOffset":4486600291,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":82068,"name":"Thread (pooled)","frames":[{"imageOffset":140703498314010,"imageIndex":0},{"imageOffset":4486642678,"imageIndex":0},{"imageOffset":4486641934,"imageIndex":0},{"imageOffset":4486641758,"imageIndex":0},{"imageOffset":4486618439,"imageIndex":0},{"imageOffset":4486600291,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":82085,"name":"NetworkConfigWatcher","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082794991,"imageIndex":0},{"imageOffset":5081965001,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":82091,"frames":[{"imageOffset":140703498542168,"imageIndex":0}]},{"id":82092,"frames":[{"imageOffset":140703498542168,"imageIndex":0}]},{"id":82097,"name":"com.apple.NSEventThread","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":140703499459774,"imageIndex":0},{"imageOffset":140703499454250,"imageIndex":0},{"imageOffset":140703499451232,"imageIndex":0},{"imageOffset":140703552606585,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":82098,"name":"ThreadPoolBackgroundWorker","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082552255,"imageIndex":0},{"imageOffset":5082554988,"imageIndex":0},{"imageOffset":5082553821,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":82104,"name":"MemoryInfra","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082794991,"imageIndex":0},{"imageOffset":5081965001,"imageIndex":0},{"imageOffset":5082462812,"imageIndex":0},{"imageOffset":5082167704,"imageIndex":0},{"imageOffset":5082603192,"imageIndex":0},{"imageOffset":5082603594,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]},{"id":82105,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking1","frames":[{"imageOffset":140703498302914,"imageIndex":0},{"imageOffset":140703498360324,"imageIndex":0},{"imageOffset":140703498331701,"imageIndex":0},{"imageOffset":140703498303656,"imageIndex":0},{"imageOffset":5082795558,"imageIndex":0},{"imageOffset":5082552255,"imageIndex":0},{"imageOffset":5082554266,"imageIndex":0},{"imageOffset":5082553869,"imageIndex":0},{"imageOffset":5082765576,"imageIndex":0},{"imageOffset":140703498560089,"imageIndex":0},{"imageOffset":140703498542203,"imageIndex":0}]}], "usedImages" : [ { "size" : 0, "source" : "A", "base" : 0, "uuid" : "00000000-0000-0000-0000-000000000000" } ], "vmSummary" : "ReadOnly portion of Libraries: Total=182.4M resident=0K(0%) swapped_out_or_unallocated=182.4M(100%)\nWritable regions: Total=1.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.2G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 128K 1 \nActivity Tracing 256K 1 \nCG backing stores 2528K 4 \nCG image 104K 7 \nColorSync 236K 27 \nCoreAnimation 72K 10 \nCoreGraphics 12K 2 \nCoreUI image data 2640K 18 \nFoundation 16K 1 \nKernel Alloc Once 8K 1 \nMALLOC 563.9M 768 \nMALLOC guard page 32K 8 \nMALLOC_LARGE (reserved) 256K 1 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)\nMach message 16K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 136K 34 \nStack 175.3M 35 \nStack Guard 56.0M 1 \nVM_ALLOCATE 117.9M 112 \nVM_ALLOCATE (reserved) 128.0M 5 reserved VM address space (unallocated)\n__DATA 11K 1 \n__DATA_CONST 20K 1 \n__DATA_DIRTY 7K 1 \n__LINKEDIT 181.8M 1 \n__TEXT 596K 1 \ndyld private memory 512K 3 \nmapped file 537.4M 622 \nshared memory 8664K 46 \n=========== ======= ======= \nTOTAL 2.0G 1720 \nTOTAL, minus reserved VM space 1.6G 1720 \n", "legacyInfo" : { "threadTriggered" : { "name" : "CrBrowserMain" } }, "trialInfo" : { "rollouts" : [ { "rolloutId" : "62b4513af75dc926494899c6", "factorPackIds" : { "COREOS_ICD" : "62fbe3cfa9a700130f60b3ea" }, "deploymentId" : 240000019 }, { "rolloutId" : "60f8ddccefea4203d95cbeef", "factorPackIds" : { }, "deploymentId" : 240000025 } ], "experiments" : [ ] }, "reportNotes" : [ "dyld_process_snapshot_create_for_process failed with 5" ] } ===== Log before crash start ===== Startup Messages --- warnings | Unable to find icon for toolbar provider 'Dump Bead Data' in bundle 'ChimeraX-GenomeTools' Unable to find icon for toolbar provider 'Highlight' in bundle 'ChimeraX- GenomeTools' Unable to find icon for toolbar provider 'Bed Models' in bundle 'ChimeraX- GenomeTools' Unable to find icon for toolbar provider 'Bead Overlap' in bundle 'ChimeraX- GenomeTools' Unable to find icon for toolbar provider 'Genome Distance' in bundle 'ChimeraX-GenomeTools' 1 messages similar to the above omitted UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/jamisonlaw/Library/CloudStorage/OneDrive- > TheOhioStateUniversity/OSBP/Bell/Data/Synchrotron/refmac8-KZ.pdb format pdb refmac8-KZ.pdb title: Salmonella typhimurium LT2 At 2.12 A Re [more info...] Chain information for refmac8-KZ.pdb #1 --- Chain | Description A | No description available B | No description available C | No description available D | No description available Non-standard residues in refmac8-KZ.pdb #1 --- MG — (MG) ===== Log before crash end ===== Log: Startup Messages --- warnings | Unable to find icon for toolbar provider 'Dump Bead Data' in bundle 'ChimeraX-GenomeTools' Unable to find icon for toolbar provider 'Highlight' in bundle 'ChimeraX- GenomeTools' Unable to find icon for toolbar provider 'Bed Models' in bundle 'ChimeraX- GenomeTools' Unable to find icon for toolbar provider 'Bead Overlap' in bundle 'ChimeraX- GenomeTools' Unable to find icon for toolbar provider 'Genome Distance' in bundle 'ChimeraX-GenomeTools' 1 messages similar to the above omitted UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-4.9.51 OpenGL renderer: AMD Radeon Pro 555 OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro14,3 Processor Name: Quad-Core Intel Core i7 Processor Speed: 2.8 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 6 MB Hyper-Threading Technology: Enabled Memory: 16 GB System Firmware Version: 499.40.2.0.0 OS Loader Version: 564.40.4~66 SMC Version (system): 2.45f5 Software: System Software Overview: System Version: macOS 13.2.1 (22D68) Kernel Version: Darwin 22.3.0 Time since boot: 2 hours, 8 minutes Graphics/Displays: Intel HD Graphics 630: Chipset Model: Intel HD Graphics 630 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x591b Revision ID: 0x0004 Automatic Graphics Switching: Supported gMux Version: 4.0.29 [3.2.8] Metal Support: Metal 3 Radeon Pro 555: Chipset Model: Radeon Pro 555 Type: GPU Bus: PCIe PCIe Lane Width: x8 VRAM (Total): 2 GB Vendor: AMD (0x1002) Device ID: 0x67ef Revision ID: 0x00c7 ROM Revision: 113-C980AJ-927 VBIOS Version: 113-C9801AP-A02 EFI Driver Version: 01.A0.927 Automatic Graphics Switching: Supported gMux Version: 4.0.29 [3.2.8] Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2880 x 1800 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.1.0 Babel: 2.11.0 backcall: 0.2.0 blockdiag: 3.0.0 build: 0.8.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 2.1.1 ChimeraX-AddCharge: 1.4 ChimeraX-AddH: 2.1.3 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.6 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-ArtiaX: 0.3 ChimeraX-Atomic: 1.41.5 ChimeraX-AtomicLibrary: 8.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.7.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.1 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-Clipper: 0.19.0 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.2 ChimeraX-CommandLine: 1.2.4 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.5 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-Cytoscape: 0.1 ChimeraX-DataFormats: 1.2.2 ChimeraX-DevelExtras: 0.4.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.3 ChimeraX-DockPrep: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-GenomeTools: 0.9 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ISOLDE: 1.5 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.1 ChimeraX-MatchMaker: 2.0.9 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.8 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.6 ChimeraX-ModelPanel: 1.3.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.1 ChimeraX-MouseModes: 1.1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-NIHPresets: 1.1.9 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.9.1 ChimeraX-OpenCommands: 1.0 ChimeraX-PDB: 2.6.8 ChimeraX-PDBBio: 1.0 ChimeraX-PDBImages: 1.1 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PhenixUI: 1.1.7 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RIBFIND: 0.2 ChimeraX-RMF: 0.13 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.7.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StarMap: 1.1.70 ChimeraX-StdCommands: 1.10 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1 ChimeraX-StrudelScore: 0.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.1.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-TestManager: 0.3 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.24.3 ChimeraX-uniprot: 2.2.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.1.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.1 ChimeraX-WebServices: 1.1.0 ChimeraX-XMAS: 1.1.2 ChimeraX-Zone: 1.0.1 colorama: 0.4.5 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.32 debugpy: 1.6.4 decorator: 5.1.1 docutils: 0.19 entrypoints: 0.4 executing: 1.2.0 filelock: 3.7.1 fonttools: 4.38.0 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.33 imagecodecs: 2022.7.31 imagesize: 1.4.1 importlib-metadata: 5.1.0 ipykernel: 6.15.3 ipython: 8.4.0 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.1.2 jupyter-client: 7.3.4 jupyter-core: 5.1.0 kiwisolver: 1.4.4 line-profiler: 3.5.1 lxml: 4.9.1 lz4: 4.0.2 MarkupSafe: 2.1.1 matplotlib: 3.5.2 matplotlib-inline: 0.1.6 MolecularDynamicsViewer: 1.4 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.0 networkx: 2.8.5 numexpr: 2.8.4 numpy: 1.23.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.2.0 pip: 22.2.2 pkginfo: 1.8.3 platformdirs: 2.5.4 prompt-toolkit: 3.0.33 psutil: 5.9.1 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.12.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2022.6 pyzmq: 24.0.1 qtconsole: 5.3.1 QtPy: 2.3.0 RandomWords: 0.4.0 requests: 2.28.1 scipy: 1.9.0 SEQCROW: 1.6.1 setuptools: 65.1.1 setuptools-scm: 7.0.5 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 5.1.1 sphinx-autodoc-typehints: 1.19.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tifffile: 2022.7.31 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.3.0 typing-extensions: 4.4.0 urllib3: 1.26.13 wcwidth: 0.2.5 webcolors: 1.12 wheel: 0.37.1 wheel-filename: 1.4.1 zipp: 3.11.0
Change History (2)
comment:1 by , 3 years ago
Cc: | added |
---|---|
Component: | Unassigned → Core |
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → Crash in ctypes calling change_tracker_changed |
comment:2 by , 3 years ago
Resolution: | → can't reproduce |
---|---|
Status: | accepted → closed |
Note:
See TracTickets
for help on using tickets.