Opened 3 years ago
Closed 3 years ago
#8676 closed defect (can't reproduce)
Crash In event loop at startup
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error
Thread 0x000070001f5a1000 (most recent call first):
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 576 in _handle_results
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001e59e000 (most recent call first):
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 528 in _handle_tasks
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001d59b000 (most recent call first):
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/selectors.py", line 416 in select
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/connection.py", line 936 in wait
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 499 in _wait_for_updates
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 519 in _handle_workers
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001c598000 (most recent call first):
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001b595000 (most recent call first):
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001a592000 (most recent call first):
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001958f000 (most recent call first):
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001858c000 (most recent call first):
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000700017589000 (most recent call first):
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000700016586000 (most recent call first):
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000700015583000 (most recent call first):
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001357d000 (most recent call first):
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 316 in wait
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 574 in wait
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 1297 in run
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x00007ff846acc680 (most recent call first):
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 283 in event_loop
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 884 in init
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1035 in
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/private/var/folders/zc/qklgqywn47s7f03bnfrjhz2m0000gn/T/AppTranslocation/D708F353-9D81-436E-8AB1-9C669D81AD40/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
{"app_name":"ChimeraX","timestamp":"2023-03-20 08:10:15.00 -0400","app_version":"","slice_uuid":"5df621ee-554e-36a8-b448-93b2334e5480","build_version":"","platform":1,"share_with_app_devs":1,"is_first_party":1,"bug_type":"309","os_version":"macOS 13.2.1 (22D68)","roots_installed":0,"incident_id":"15AFB023-CFE6-4908-9183-1492301542FF","name":"ChimeraX"}
{
"uptime" : 51000,
"procRole" : "Unspecified",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro16,2",
"coalitionID" : 4269,
"osVersion" : {
"train" : "macOS 13.2.1",
"build" : "22D68",
"releaseType" : "User"
},
"captureTime" : "2023-03-20 08:10:14.7292 -0400",
"incident" : "15AFB023-CFE6-4908-9183-1492301542FF",
"pid" : 14667,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2023-03-20 08:10:01.9211 -0400",
"procStartAbsTime" : 51175759256951,
"procExitAbsTime" : 51188564206378,
"procName" : "ChimeraX",
"procPath" : "\/private\/var\/folders\/*\/ChimeraX-1.5.app\/Contents\/MacOS\/ChimeraX",
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "5D07DD33-C577-5593-F009-44406835B33A",
"responsiblePid" : 14605,
"wakeTime" : 833,
"bridgeVersion" : {"build":"20P3045","train":"7.2"},
"sleepWakeUUID" : "199FC2B0-C0A5-452F-A469-D3D3A9361EEF",
"sip" : "enabled",
"vmRegionInfo" : "0x10b929270 is in 0x10b928000-0x10b92a000; bytes after start: 4720 bytes before end: 3471\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n mapped file 10b920000-10b928000 [ 32K] r--\/rwx SM=COW ...ct_id=94f4e6f\n---> mapped file 10b928000-10b92a000 [ 8K] r-x\/rwx SM=COW ...ct_id=94d826f\n mapped file 10b92a000-10b92b000 [ 4K] rw-\/rwx SM=COW ...ct_id=94dde6f",
"exception" : {"codes":"0x000000000000000a, 0x000000010b929270","rawCodes":[10,4489122416],"type":"EXC_BAD_ACCESS","signal":"SIGBUS","subtype":"KERN_MEMORY_ERROR at 0x000000010b929270"},
"ktriageinfo" : "VM - Object has no pager\n",
"vmregioninfo" : "0x10b929270 is in 0x10b928000-0x10b92a000; bytes after start: 4720 bytes before end: 3471\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n mapped file 10b920000-10b928000 [ 32K] r--\/rwx SM=COW ...ct_id=94f4e6f\n---> mapped file 10b928000-10b92a000 [ 8K] r-x\/rwx SM=COW ...ct_id=94d826f\n mapped file 10b92a000-10b92b000 [ 4K] rw-\/rwx SM=COW ...ct_id=94dde6f",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
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"legacyInfo" : {
"threadTriggered" : {
}
},
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "6112e3d2fc54bc3389840661",
"factorPackIds" : {
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},
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}
],
"experiments" : [
]
},
"reportNotes" : [
"dyld_process_snapshot_create_for_process failed with 5"
]
}
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-20.2.50
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,2
Processor Name: Quad-Core Intel Core i5
Processor Speed: 2 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 512 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 1916.80.2.0.0 (iBridge: 20.16.3045.0.0,0)
OS Loader Version: 564.40.4~66
Software:
System Software Overview:
System Version: macOS 13.2.1 (22D68)
Kernel Version: Darwin 22.3.0
Time since boot: 1 day, 10 hours, 54 minutes
Graphics/Displays:
Intel Iris Plus Graphics:
Chipset Model: Intel Iris Plus Graphics
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x8a53
Revision ID: 0x0007
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.1.0
Babel: 2.11.0
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.4
ChimeraX-AddH: 2.2.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.6
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.41.5
ChimeraX-AtomicLibrary: 8.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.4
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.5
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.1
ChimeraX-PDB: 2.6.8
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.7.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.24.3
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.4
decorator: 5.1.1
docutils: 0.19
entrypoints: 0.4
executing: 1.2.0
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.7.31
imagesize: 1.4.1
importlib-metadata: 5.1.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 5.1.0
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.4
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
platformdirs: 2.5.4
prompt-toolkit: 3.0.33
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.6
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
setuptools: 65.1.1
setuptools-scm: 7.0.5
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
typing-extensions: 4.4.0
urllib3: 1.26.13
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.11.0
Change History (2)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash In event loop at startup |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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