Opened 3 years ago
Closed 3 years ago
#8705 closed defect (nonchimerax)
Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Thread 0x000070001c0ac000 (most recent call first):
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 316 in wait
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 574 in wait
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 1297 in run
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x00007ff84ac35680 (most recent call first):
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 2730 in draw_elements
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1736 in draw
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 836 in _draw_geometry
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 771 in draw_self
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 764 in draw
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1551 in _draw_multiple
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1538 in draw_opaque
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 247 in _draw_scene
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 177 in draw
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 73 in draw_new_frame
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 283 in event_loop
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 884 in init
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1035 in
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
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{
"uptime" : 21000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 503,
"deployVersion" : 210,
"modelCode" : "MacBookPro16,2",
"coalitionID" : 869,
"osVersion" : {
"train" : "macOS 13.2.1",
"build" : "22D68",
"releaseType" : "User"
},
"captureTime" : "2023-03-23 14:24:57.6710 +0100",
"incident" : "994A4E2D-1785-4D00-896C-4B12DFC12F97",
"pid" : 31423,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2023-03-23 12:01:37.9841 +0100",
"procStartAbsTime" : 12836712043937,
"procExitAbsTime" : 21436498386434,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.5.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.5.0","CFBundleVersion":"1.5.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"26B60DFA-3E7D-5F71-8219-B7568841C616","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "7CF06290-880A-8DF6-B733-9A3F8B6A72B5",
"throttleTimeout" : 2147483647,
"bridgeVersion" : {"build":"20P3045","train":"7.2"},
"sip" : "enabled",
"exception" : {"codes":"0x0000000000000000, 0x0000000000000000","rawCodes":[0,0],"type":"EXC_CRASH","signal":"SIGABRT"},
"asi" : {"libsystem_c.dylib":["abort() called"]},
"asiSignatures" : ["Graphics hardware encountered an error and was reset: 0x00000002\n"],
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : 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===== Log before crash start =====
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/lbetancurt/Desktop/Exo Paper/Chimera
> sessions/Session_zoom_DP1.cxs" format session
Opened Density DP1 as #9, grid size 256,256,256, pixel 0.86, shown at level
0.16, step 1, values float32
Opened Density DP2 as #10, grid size 256,256,256, pixel 0.86, shown at level
0.16, step 1, values float32
Opened Density Template as #11, grid size 256,256,256, pixel 0.86, shown at
level 0.16, step 1, values float32
Opened Density Primer as #12, grid size 256,256,256, pixel 0.86, shown at
level 0.165, step 1, values float32
Opened Density PCNA as #13, grid size 256,256,256, pixel 0.86, shown at level
0.16, step 1, values float32
Opened Density DP1 gaussian as #15, grid size 256,256,256, pixel 0.86, shown
at level 0.0985, step 1, values float32
Opened Density DP2 gaussian as #14, grid size 256,256,256, pixel 0.86, shown
at level 0.114, step 1, values float32
Opened Density Template gaussian as #16, grid size 256,256,256, pixel 0.86,
shown at level 0.0966, step 1, values float32
Opened Density Primer gaussian as #17, grid size 256,256,256, pixel 0.86,
shown at level 0.135, step 1, values float32
Opened Density PCNA gaussian as #18, grid size 256,256,256, pixel 0.86, shown
at level 0.112, step 1, values float32
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #19, grid size
256,256,256, pixel 0.86, shown at level 0.256, step 1, values float32
Opened All-Map as #20, grid size 256,256,256, pixel 0.86, shown at level 0.16,
step 1, values float32
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #21, grid size
256,256,256, pixel 0.86, shown at level 0.16, step 1, values float32
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #8, grid size
256,256,256, pixel 0.86, shown at level 0.16, step 1, values float32
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #22, grid size
256,256,256, pixel 0.86, shown at level 0.16, step 1, values float32
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #23, grid size
256,256,256, pixel 0.86, shown at step 1, values float32
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #24, grid size
256,256,256, pixel 0.86, shown at level 0.16, step 1, values float32
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc as #25, grid size
256,256,256, pixel 0.86, shown at level 0.16, step 1, values float32
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #27, grid size
256,256,256, pixel 0.86, shown at level 0.138, step 1, values float32
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #28, grid size
256,256,256, pixel 0.86, shown at level 0.116, step 1, values float32
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #29, grid size
256,256,256, pixel 0.86, shown at level 0.11, step 1, values float32
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #30, grid size
256,256,256, pixel 0.86, shown at level 0.16, step 1, values float32
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #31, grid size
256,256,256, pixel 0.86, shown at level 0.16, step 1, values float32
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #32, grid size
256,256,256, pixel 0.86, shown at level 0.16, step 1, values float32
opened ChimeraX session
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
20 atoms, 21 bonds, 1 residue, 1 model selected
> hide sel atoms
> lighting full
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
20 atoms, 21 bonds, 1 residue, 1 model selected
> ui tool show "Color Actions"
> color sel #ff7913ff
> color sel byhetero
> select clear
> lighting simple
> ui tool show "Side View"
> lighting full
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> lighting soft
> lighting full
> lighting shadows false
> lighting soft
> lighting simple
> show #!28 models
> show #!29 models
> show #!30 models
> show #!31 models
> show #!32 models
> show #!27 models
> hide #!27 models
> hide #!26 models
> show #!26 models
> hide #!26 models
> show #!26 models
> hide #!26 models
> show #!26 models
> show #!25 models
> hide #!25 models
> show #!27 models
> hide #!30 models
> hide #!29 models
> hide #!27 models
> hide #!31 models
> hide #!32 models
> hide #!28 models
> select add #1/A:586
11 atoms, 11 bonds, 1 residue, 1 model selected
> select add #1/A:412
23 atoms, 23 bonds, 2 residues, 2 models selected
> select add #1/A:413
30 atoms, 30 bonds, 3 residues, 2 models selected
> select add #1/A:499
41 atoms, 40 bonds, 4 residues, 2 models selected
> volume zone #25 nearAtoms sel range 2 newMap true
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #33, grid size
256,256,256, pixel 0.86, shown at step 1, values float32
> volume #33 level 0.08767
> color #33 #fffb00ff models
> color #33 #fffb007c models
> color #33 #fffb00dc models
> color #33 #fffb00db models
> hide #!33 models
> select up
198 atoms, 199 bonds, 26 residues, 2 models selected
> select up
3189 atoms, 3267 bonds, 402 residues, 2 models selected
> select #1/A:586
11 atoms, 11 bonds, 1 residue, 1 model selected
> select up
46 atoms, 46 bonds, 5 residues, 2 models selected
> select up
3189 atoms, 3267 bonds, 402 residues, 2 models selected
> select #1/A:586
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #1/A:585
9 atoms, 8 bonds, 1 residue, 1 model selected
> select clear
Drag select of 1 residues
> select #1/A:586
11 atoms, 11 bonds, 1 residue, 1 model selected
> select add #1/A:365
17 atoms, 16 bonds, 2 residues, 2 models selected
> select clear
> select #1/A:586
11 atoms, 11 bonds, 1 residue, 1 model selected
> select up
46 atoms, 46 bonds, 5 residues, 2 models selected
> select up
3189 atoms, 3267 bonds, 402 residues, 2 models selected
> select subtract #1/A:586
3178 atoms, 3254 bonds, 401 residues, 2 models selected
> select subtract #1/A:413
3171 atoms, 3245 bonds, 400 residues, 2 models selected
> select subtract #1/A:412
3159 atoms, 3232 bonds, 399 residues, 2 models selected
> select subtract #1/A:499
3148 atoms, 3220 bonds, 398 residues, 2 models selected
> select add #1/A:701@FE
3149 atoms, 3220 bonds, 399 residues, 2 models selected
> select add #1/A:702@ZN
3150 atoms, 3220 bonds, 400 residues, 2 models selected
> volume zone #25 nearAtoms sel range 2 newMap true
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #34, grid size
256,256,256, pixel 0.86, shown at step 1, values float32
> show #!33 models
> hide #!33 models
> hide #!34 models
> select clear
> select add #1/A:701@FE
1 atom, 1 residue, 1 model selected
> select add #1/A:702@ZN
2 atoms, 2 residues, 1 model selected
> volume zone #25 nearAtoms sel range 2 newMap true
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #35, grid size
256,256,256, pixel 0.86, shown at step 1, values float32
> color #35 #8efa00ff models
> show #!34 models
> show #!33 models
> hide #!33 models
> hide #!34 models
> show #!34 models
> show #!33 models
> hide #!34 models
> hide #!35 models
> hide #!33 models
> show #!33 models
> show #!34 models
> hide #!33 models
> hide #!34 models
> select clear
> select #1/A:701@FE
1 atom, 1 residue, 1 model selected
> select add #1/A:702@ZN
2 atoms, 2 residues, 1 model selected
> volume zone #25 nearAtoms sel range 3 newMap true
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #36, grid size
256,256,256, pixel 0.86, shown at step 1, values float32
> color #36 #8efa00ff models
> show #!34 models
> volume #36 level 0.09763
> show #!29 models
> hide #!29 models
> show #!29 models
> show #!31 models
> hide #!31 models
> hide #!29 models
> select #1/B:1178
11 atoms, 10 bonds, 1 residue, 1 model selected
> select add #1/B:1107
18 atoms, 17 bonds, 2 residues, 2 models selected
> select add #1/B:1114
29 atoms, 27 bonds, 3 residues, 2 models selected
> volume zone #25 nearAtoms sel range 3 newMap true
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #37, grid size
256,256,256, pixel 0.86, shown at step 1, values float32
> surface dust #33 size 8.6
> surface dust #34 size 8.6
> surface dust #36 size 8.6
> surface dust #37 size 8.6
> undo
> close #37
> volume zone #25 nearAtoms sel range 3 newMap true
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #37, grid size
256,256,256, pixel 0.86, shown at step 1, values float32
> close #37
> select add #1/B:1114
29 atoms, 27 bonds, 3 residues, 2 models selected
> select up
336 atoms, 339 bonds, 41 residues, 2 models selected
> select down
29 atoms, 27 bonds, 3 residues, 2 models selected
> volume zone #25 nearAtoms sel range 3 newMap true
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #37, grid size
256,256,256, pixel 0.86, shown at step 1, values float32
> surface dust #33 size 8.6
> surface dust #34 size 8.6
> surface dust #36 size 8.6
> surface dust #37 size 8.6
> close #37
> volume zone #25 nearAtoms sel range 3.5 newMap true
Opened cryosparc_P21_J151_005_volume_map_sharp.mrc zone as #37, grid size
256,256,256, pixel 0.86, shown at step 1, values float32
> surface dust #33 size 8.6
> surface dust #34 size 8.6
> surface dust #36 size 8.6
> surface dust #37 size 8.6
> select #1/P:18@O3'
1 atom, 1 residue, 1 model selected
> select up
5 atoms, 2 bonds, 4 residues, 2 models selected
> select up
78 atoms, 84 bonds, 4 residues, 2 models selected
> ui tool show "Color Actions"
> color sel #8efa00ff
> color sel #a70a05ff
> color sel #ff7913ff
> color sel byhetero
> select clear
> color #37 #00fdffff models
> show #!31 models
> select clear
> show #!17 models
> hide #!1 models
> color #33 #fffb00ff models
> color #33 #fffc79ff models
> color #34 #fffc79ff models
> select clear
> color #37 #005493ff models
> hide #!26 models
> save "/Users/lbetancurt/Desktop/Density DP1 and zn-fnv2.tif" width 2000
> height 847 supersample 4 transparentBackground true
> hide #!17 models
> hide #!31 models
> hide #!33 models
> hide #!34 models
> hide #!36 models
> hide #!37 models
> show #!26 models
> show #!1 models
> select #1/A:285
11 atoms, 11 bonds, 1 residue, 1 model selected
> select clear
> color #!1,26 byhetero
> undo
> graphics silhouettes true
> save /Users/lbetancurt/Desktop/DP1_zn-finger-III_cartoon.tif width 3000
> height 1270 supersample 4 transparentBackground true
> show #!33 models
> show #!29 models
> hide #!29 models
> show #!31 models
> hide #!31 models
> show #!37 models
> color #37 #00fdffff models
> color #37 #00fdffb3 models
> color #37 #00fdff4d models
> graphics silhouettes false
> color #33 #fffc79b3 models
> color #33 #fffc7980 models
> color #33 #fffc794d models
> color #33 #fffc7980 models
> color #33 #fffc7999 models
> color #33 #fffc7966 models
> show #!17 models
> color #17 #ff930080 models
> color #17 #ff93004d models
> select clear
> save /Users/lbetancurt/Desktop/zoom_DP1.tif width 3000 height 1270
> supersample 4 transparentBackground true
> select #1/A:415
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
27 atoms, 27 bonds, 3 residues, 2 models selected
> select up
3189 atoms, 3267 bonds, 402 residues, 2 models selected
> ui tool show "Color Actions"
> color (#!1 & sel) #fffc79ff
> select clear
> select #33
2 models selected
> hide #!33 models
> select #1/A:586
11 atoms, 11 bonds, 1 residue, 1 model selected
> select add #1/A:413
18 atoms, 19 bonds, 2 residues, 2 models selected
> select add #1/A:412
30 atoms, 30 bonds, 3 residues, 2 models selected
> select add #1/A:499
41 atoms, 40 bonds, 4 residues, 2 models selected
> color (#!1 & sel) #929000ff
> color sel byhetero
> select clear
> select #1/B:1175
7 atoms, 6 bonds, 1 residue, 1 model selected
> select up
145 atoms, 145 bonds, 17 residues, 2 models selected
> select up
7293 atoms, 7460 bonds, 908 residues, 2 models selected
> color (#!1 & sel) #011993ff
> select clear
> select #1/B:1102
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
191 atoms, 194 bonds, 24 residues, 2 models selected
> select up
7293 atoms, 7460 bonds, 908 residues, 2 models selected
> color (#!1 & sel) #005493ff
> select clear
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-20.2.50
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,2
Processor Name: Quad-Core Intel Core i7
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 512 KB
L3 Cache: 8 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 1916.80.2.0.0 (iBridge: 20.16.3045.0.0,0)
OS Loader Version: 564.40.4~66
Software:
System Software Overview:
System Version: macOS 13.2.1 (22D68)
Kernel Version: Darwin 22.3.0
Time since boot: 5 hours, 58 minutes
Graphics/Displays:
Intel Iris Plus Graphics:
Chipset Model: Intel Iris Plus Graphics
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x8a53
Revision ID: 0x0007
Metal Support: Metal 3
Displays:
LG HDR 4K:
Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Connection Type: Thunderbolt/DisplayPort
24P1X:
Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array)
UI Looks like: 1920 x 1200 @ 60.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: GMBKAHA132023
Mirror: Off
Online: Yes
Rotation: Supported
Adapter Type: Apple USB-C Digital AV Adapter
Adapter Firmware Version: 2.35
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.1.0
Babel: 2.11.0
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.4
ChimeraX-AddH: 2.2.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.6
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.41.5
ChimeraX-AtomicLibrary: 8.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.4
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.5
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.1
ChimeraX-PDB: 2.6.8
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.7.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.24.3
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.4
decorator: 5.1.1
docutils: 0.19
entrypoints: 0.4
executing: 1.2.0
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.7.31
imagesize: 1.4.1
importlib-metadata: 5.1.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 5.1.0
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.4
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
platformdirs: 2.5.4
prompt-toolkit: 3.0.33
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.6
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
setuptools: 65.1.1
setuptools-scm: 7.0.5
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
typing-extensions: 4.4.0
urllib3: 1.26.13
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.11.0
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 3 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics hardware encountered an error and was reset → Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics |
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Apple Intel graphics driver crash.