Timeline



May 4, 2019:

11:53 PM Ticket #1840 (Session restore with BILD objects: Unable to restore objects of ...) closed by Greg Couch
fixed: Make AtomicShapeDrawings saveable in sessions.
12:56 AM Ticket #1660 (Unexpected None data given to StructureSeq.restore_snapshot()) closed by Greg Couch
fixed: Revised code to not (over)write session file when there is an error. …

May 3, 2019:

6:55 PM Ticket #1912 (Toolbar icons logs dozens of sRGB profile warnings on startup) closed by Greg Couch
fixed: Used "pngcrush -ow -rem allb -reduce file.png" to remove erroneous …
4:32 PM Ticket #1728 (AddH adds spurious hydrogens when called twice) closed by pett
fixed: Fixed the atom.is_missing_heavy_template_neighbors() problem.
8:15 AM ChangeLog edited by Elaine Meng
(diff)

May 2, 2019:

6:06 PM Ticket #1912 (Toolbar icons logs dozens of sRGB profile warnings on startup) created by goddard@…
[…]
5:26 PM Ticket #1911 (Error saving image in VR mode) closed by Tom Goddard
fixed: Fixed. OpenVR compositor submit() changed OpenGL read framebuffer.
5:24 PM Ticket #1911 (Error saving image in VR mode) created by goddard@…
[…]
3:08 PM Ticket #1731 (Crash due to registration error when starting from icon) closed by Conrad Huang
can't reproduce
3:04 PM Ticket #1404 (Bad bonds in mmCIF 1lpv) closed by Conrad Huang
duplicate: Same as #1195.
3:00 PM 2019-05-02 created by Conrad Huang
1:58 PM DeveloperMeetings edited by Conrad Huang
(diff)
12:47 PM Ticket #1907 (OpenGL buffer problem) closed by Tom Goddard
can't reproduce: Could not find the cause of this error. Could not reproduce it. The …
11:34 AM Ticket #1910 (Crash with symmetry expansion) closed by Tom Goddard
nonchimerax: This is a problem with macOS that I have seen before. If you ask the …
11:22 AM Ticket #1909 (Crash doing *something* with a DockWidget) closed by pett
can't reproduce
6:04 AM Ticket #1910 (Crash with symmetry expansion) created by James.Conway@…
[…]

May 1, 2019:

6:16 PM Ticket #1909 (Crash doing *something* with a DockWidget) created by chimerax-bug-report@…
[…]
2:52 PM Ticket #1782 (Crash finding 6-member planar NR2 ring in 5vpx) closed by pett
duplicate: duplicate of #1781
2:51 PM Ticket #1781 (Crash finding 6-member planar NR2 ring in 5vrj) closed by pett
fixed: Wasn't guaranteeing that the neighbors of the first ring atom were …
2:06 PM Ticket #1716 (Missing bond) closed by pett
fixed: LINK/SSBOND now not treated as specifying all the connectivity of the …
12:35 PM Ticket #1908 (nuc atoms only shows half-ribose after session saved as tube display) created by Elaine Meng
After I show all atoms of a nucleotide, then change to tube/slab, and …
11:54 AM Ticket #1907 (OpenGL buffer problem) created by Elaine Meng
[…]

Apr 30, 2019:

6:52 PM Ticket #1906 (H-bonds from mmCIF more dashes than H-bond display default) created by Elaine Meng
(e.g. 1bna and show it as atoms the H-bonds have more dashes than the …
6:43 PM Ticket #1905 (ringfill not saved in session) created by Elaine Meng
If I save a session with filled rings and restore it the rings are not …
3:48 PM Ticket #1892 (Provide documentation for managers/providers) closed by Conrad Huang
fixed: Fixed by replacing old tag documentation with link to current …
3:16 PM Ticket #1890 (Blast protein results columns for ligand all shown as {{ctx.content}}) closed by Conrad Huang
fixed: Fixed in e476b93f6. The problematic columns were all …
2:33 PM WikiStart edited by Conrad Huang
(diff)
7:44 AM Ticket #1904 (Background-dependent distance color) created by olibclarke@…
[…]
7:41 AM Ticket #1903 (Tabbed toolbar customization) created by olibclarke@…
[…]

Apr 29, 2019:

4:21 PM ChangeLog edited by Elaine Meng
(diff)
4:20 PM ChangeLog edited by Elaine Meng
(diff)
4:18 PM ChangeLog edited by Elaine Meng
(diff)
3:37 PM Ticket #1902 (RFE: surface should update during trajectory playback) created by Elaine Meng
... as it would in Chimera, for example. Currently it is very …
2:28 PM Ticket #1899 (option to disable docking) closed by pett
wontfix: Hi Oliver, There are two existing features that may help in this …
2:28 PM Ticket #1901 (RFE: add "running tools" section to Tools menu) created by Elaine Meng
...similar to what's in Chimera or currently shown in ChimeraX with …

Apr 28, 2019:

11:42 AM Ticket #1900 (File history UI suggestions) created by olibclarke@…
[…]
11:38 AM Ticket #1899 (option to disable docking) created by olibclarke@…
[…]
11:31 AM Ticket #1898 (Option to number based on reference sequence) created by olibclarke@…
[…]

Apr 27, 2019:

9:16 AM Ticket #1897 (OpenMM ToolShed bundle) created by Tristan Croll
As discussed in our meeting in March (if there's already a ticket on …

Apr 26, 2019:

1:29 PM Ticket #1895 (Problem deleting from command history) closed by pett
duplicate: Fixed awhile ago
1:10 PM Ticket #1893 (Unexpected None data given to AtomicStructure.restore_snapshot()) closed by pett
duplicate: Hi Alex, Unfortunately the real error occurred when the session was …
12:01 PM Ticket #1593 (multi-level "sel back/forward") closed by pett
wontfix: Setting a selection is complex and multi-level undo is rarely actually …
10:59 AM Ticket #1889 (Incorrect ChimeraX version for ISOLDE) closed by pett
can't reproduce: Hi Fabrizio, I'm glad something is working. :-) FYI, using "open -a …
9:08 AM Ticket #1896 (RFE: measure rmsd command) created by Tristan Croll
Fairly trivial to implement, but unless I've just failed to find it it …
6:41 AM Ticket #1895 (Problem deleting from command history) created by chimerax-bug-report@…
[…]
5:24 AM Ticket #1894 (AttributeError: 'was_deleted' in PseudobondGroup) created by k.futterer@…
[…]
1:59 AM Ticket #1893 (Unexpected None data given to AtomicStructure.restore_snapshot()) created by cma@…
[…]

Apr 25, 2019:

2:47 PM 2019-04-25 created by Conrad Huang
2:09 PM DeveloperMeetings edited by Conrad Huang
(diff)
1:23 PM Ticket #1892 (Provide documentation for managers/providers) created by pett
No documentation in …
1:21 PM Ticket #1891 (RFE: Blast Protein query sequence from text) created by Elaine Meng
I.e. allow searching with sequence input as text, not just sequences …
12:42 PM Ticket #1890 (Blast protein results columns for ligand all shown as {{ctx.content}}) created by Elaine Meng
I tried a couple different searches so I don't think it matters what …
12:27 PM Ticket #1888 (Silhouettes: glBlitFramebuffer: invalid operation) closed by Tom Goddard
nonchimerax: Showing silhouette edges gives an OpenGL error with this Mesa VMWare …
11:17 AM ChangeLog edited by pett
(diff)
10:30 AM Ticket #1889 (Incorrect ChimeraX version for ISOLDE) reopened by pett
5:46 AM Ticket #1861 (OpenMM crash) closed by Tristan Croll
can't reproduce: Re-ran the same scenario on the same computer without a crash. It's …
5:26 AM Ticket #1889 (Incorrect ChimeraX version for ISOLDE) closed by Tristan Croll
not a bug: You'll need to be using the ChimeraX 0.8 release version to install …
3:06 AM Ticket #1889 (Incorrect ChimeraX version for ISOLDE) created by fabrizio.martino@…
[…]
1:20 AM Ticket #1888 (Silhouettes: glBlitFramebuffer: invalid operation) created by victoria.ruiz.serra@…
[…]

Apr 24, 2019:

2:47 PM Ticket #1842 (Session save: Unable to restore objects of ImageDrawing class in ...) closed by Tom Goddard
fixed: Fixed. Made image rendering submodel restore itself in sessions so …
12:08 PM Ticket #1887 (windowsize command not obeyed (after showing Volume Viewer?)) closed by Tom Goddard
not a bug
11:33 AM Ticket #1887 (windowsize command not obeyed (after showing Volume Viewer?)) created by Elaine Meng
I'd successfully made windowsize 256 x 256 but after I opened a volume …
10:16 AM Ticket #1886 (Attempt to open Chimera 1 session) closed by pett
not a bug
9:18 AM Ticket #1886 (Attempt to open Chimera 1 session) created by chimerax-bug-report@…
[…]

Apr 23, 2019:

8:58 PM Ticket #1396 (PC requires restart to launch ChimeraX a second time) closed by Greg Couch
nonchimerax: Hello, My apologies for not following up on this earlier. Do you …
8:47 PM Ticket #1684 (BZip2 missing in Linux daily builds) closed by Greg Couch
fixed: Dropped use of bz2.
8:40 PM Ticket #1670 (about.html missing on Linux) closed by Greg Couch
fixed: Fixed on 23 January 2019.
4:20 PM Ticket #1843 (Move selected models uses wrong coordinates if parent model moved in scene) closed by Tom Goddard
fixed: Fixed rotate and translate selected models. Would need a test case to …
3:52 PM Ticket #1881 (Clicking Model panel show button on volume does not show it) closed by Tom Goddard
fixed: Fixed.
2:54 PM Ticket #1883 (Open command "vseries true" option does not work with Amira files) closed by Tom Goddard
fixed: Fixed. Any map format can now be used with vseries option, although …
2:07 PM Ticket #1882 (Show errors that occur before main window started in GUI log) closed by pett
fixed: Collations logs don't normally collate bugs (allowing them to …
1:44 PM Ticket #1885 (error using BLOSUM100 in blast) created by Elaine Meng
[…]
11:45 AM Ticket #872 (Add chirality property to atoms) closed by pett
fixed: If the corresponding CCD template has been read (which it should if …
2:33 AM Ticket #1884 (O1P/O2P disconnected) created by nicholas.sofos@…
[…]

Apr 22, 2019:

11:57 PM Ticket #1879 (ChimeraX does not start on Windows 10) closed by Greg Couch
fixed: Disabled use of "-X faulthandler" which makes things work again when …
5:57 PM Ticket #1883 (Open command "vseries true" option does not work with Amira files) created by Tom Goddard
The vseries option to the open command is supposed to treat the …
5:51 PM Ticket #1882 (Show errors that occur before main window started in GUI log) created by Tom Goddard
When an error occurs before the main window is shown the error goes to …
5:46 PM Ticket #1881 (Clicking Model panel show button on volume does not show it) created by Tom Goddard
With AICS_10-136.ome.tif clicking the show button on channel 4 (model …
5:43 PM Ticket #1880 (Have macOS installer dmg show arrow to drag ChimeraX to Applications) created by Tom Goddard
At the ChimeraX microscopy tutorial I found another user running …
4:06 PM Ticket #1879 (ChimeraX does not start on Windows 10) created by goddard@…
[…]
3:09 PM Ticket #1878 (Smarter handling of ATOM/HETATM column 21) created by p.qian@…
Column 21 of ATOM/HETATM records is not officially assigned a meaning …
2:26 PM ChangeLog edited by Elaine Meng
(diff)
11:08 AM Ticket #1877 (measure buriedArea syntax documentation problem) closed by Elaine Meng
fixed
8:20 AM Ticket #1877 (measure buriedArea syntax documentation problem) created by rohou.alexis@…
[…]

Apr 21, 2019:

5:59 PM Ticket #1865 (rerunning BLAST from same instance of tool puts unformatted data at ...) closed by Conrad Huang
fixed: Fixed in 3e4701234. The bootgrid table was used …
4:33 PM Ticket #1864 (BLAST results show parameter settings different from blast command ...) closed by Conrad Huang
fixed: Fixed in 7ae130f8. The BLAST search parameters are now …

Apr 19, 2019:

11:52 AM Ticket #1876 (Allow writing OME TIFF files containing multichannel optical ...) created by Tom Goddard
Would like to be able to write out optical microscopy data including …
11:40 AM Ticket #1875 (Allow creating multiple marker sets) created by Tom Goddard
Currently the marker placement mouse mode always adds markers to the …
8:41 AM Ticket #1874 (ISOLDE: isolde/libmolc.so: undefined symbol) created by mar2294@…
[…]

Apr 18, 2019:

8:17 PM Ticket #1870 ("measure volume" when style isn't surface gives TypeError: Array ...) closed by Tom Goddard
fixed: Fixed. Surface that never had geometry set was giving error when …
8:04 PM Ticket #1873 (Volume series surface disappears when histogram threshold moved) closed by Tom Goddard
fixed: Fixed. Problem was the volume surface associated with each histogram …
8:03 PM Ticket #1873 (Volume series surface disappears when histogram threshold moved) created by Tom Goddard
Saw in today's 3d microscopy workshop at Parnassus that after changing …
7:19 PM Ticket #1838 (Session close/reset: NameError: name 'task' is not defined) closed by Conrad Huang
fixed: Fixed in 1922f9e15 Fix multiple bugs introduced by …
6:34 PM Ticket #1871 (Graphics window gray after first model opened.) closed by Tom Goddard
fixed: Fixed. If resize event arrives before ui.main_window set then we …
5:57 PM Ticket #1872 (RFE: visual indicator on mouse-mode icons for which mode is active) created by Elaine Meng
Since the right-button mouse modes are mutually exclusive, it would be …
5:36 PM Ticket #1871 (Graphics window gray after first model opened.) created by goddard@…
[…]
5:10 PM Ticket #1870 ("measure volume" when style isn't surface gives TypeError: Array ...) created by Elaine Meng
Although it is a user error to try to use "measure volume" when the …
3:32 PM Ticket #1852 (Unable to render images despite nogui/offscreen) closed by Greg Couch
fixed: A couple of bugs where quashed: (1) PyOpenGL wasn't loading the OSMesa …
3:28 PM Ticket #1735 (AddH fails after residue deletion) closed by pett
fixed: Problem only occurs if SEQRES records (or mmCIF equivalent) are …
2:54 PM ChangeLog edited by pett
(diff)
2:22 PM Ticket #1858 (Blast Protein should not list nucleic chains as possible queries) closed by Conrad Huang
fixed: Fixed in 2db95f5ae. Only amino acid chains are listed now.
1:28 PM Ticket #1859 (Blast Protein should not launch when return pressed in numerical field) closed by Conrad Huang
fixed: Fixed. Return key now takes you to the next field except for the …
1:13 AM Ticket #1869 (Crash trying to demote Chain to Sequence) created by j.r.lewandowski@…
[…]

Apr 17, 2019:

5:20 PM Ticket #1866 (Installing ISOLDE: 'utf-8' codec can't decode byte 0xa0 in position ...) closed by pett
duplicate
4:41 PM Ticket #1868 (Error switching to volume plane style with multichannel data) closed by Tom Goddard
fixed: Fixed. Volume viewer saw volume region switch to single plane and …
4:29 PM Ticket #1868 (Error switching to volume plane style with multichannel data) created by goddard@…
[…]
2:53 PM Ticket #1867 (Errors restoring session with TIFF stacks or directly opening them) created by En.Cai@…
[…]
1:46 PM Ticket #1866 (Installing ISOLDE: 'utf-8' codec can't decode byte 0xa0 in position ...) created by chimerax-bug-report@…
[…]
12:42 PM Ticket #1863 (Shell useless after most errors) closed by pett
duplicate: Duplicate of #1802; adding you to cc list for that
12:35 PM Ticket #470 (Multiple copies of shell tool) closed by pett
fixed: Some previous change has fixed this -- I'm not sure what!
12:03 PM Ticket #1865 (rerunning BLAST from same instance of tool puts unformatted data at ...) created by Elaine Meng
I don't know if this is widget flakiness and/or lack of clearing …
11:57 AM Ticket #1864 (BLAST results show parameter settings different from blast command ...) created by Elaine Meng
Probably doesn't matter which structure, but I had 2ahj open and used …
11:49 AM Ticket #1863 (Shell useless after most errors) created by goddard@…
[…]
11:16 AM Ticket #1862 (Some funkiness installing wheels needing tilde expansion) created by goddard@…
[…]
10:28 AM Ticket #1861 (OpenMM crash) created by qxjiang@…
[…]
10:16 AM Ticket #1860 (Blast Protein results widget flaky? (sometimes no horizontal scroll)) created by Elaine Meng
This may or may not be reproducible but on some of my Blast Protein …
10:13 AM Ticket #1859 (Blast Protein should not launch when return pressed in numerical field) created by Elaine Meng
Causes inadvertent premature launching, especially bad when searching …
10:07 AM Ticket #1858 (Blast Protein should not list nucleic chains as possible queries) created by Elaine Meng
Summary says it all. For example if I have 6cmn open, the choices of …
9:55 AM Ticket #1857 (RFE: Blast Protein ability to show alignment for any subset of hits in ...) created by Elaine Meng
This is an important feature of Chimera's Blast Protein. Otherwise …
9:38 AM Ticket #1856 (OpenGL error, glClear: invalid framebuffer operation) created by monica.mittal@…
[…]
1:26 AM Ticket #1855 (Can't set 'vertices' attribute on Drawing) created by sean.connell@…
[…]

Apr 16, 2019:

1:23 PM Ticket #1851 (OpenGL error drawing selection: glBlitFramebuffer -- invalid operation) closed by Tom Goddard
nonchimerax: VMware opengl problem drawing selection outline.
1:00 PM Ticket #1852 (Unable to render images despite nogui/offscreen) reopened by Elaine Meng
well the bugreporting error is fixed, but not the other part
12:59 PM Ticket #1852 (Unable to render images despite nogui/offscreen) closed by Elaine Meng
fixed: fixed by Tom G
12:58 PM Ticket #1853 (test bug reporting) closed by pett
not a bug
12:53 PM Ticket #1854 (Error reporting a bug when http proxy used) closed by Tom Goddard
fixed: Fixed. Only happened when http proxy set. Import was at wrong indent …
12:51 PM Ticket #1854 (Error reporting a bug when http proxy used) created by jmsstarlight@…
Begin forwarded message: From: James Starlight Subject: Re: …
12:48 PM Ticket #1850 (ParmEd) closed by pett
not a bug: I guess I'm closing this for now then!
12:47 PM Ticket #1853 (test bug reporting) created by pett
[…]
12:38 PM Ticket #1852 (Unable to render images despite nogui/offscreen) created by jmsstarlight@…
[…]
5:01 AM Ticket #1851 (OpenGL error drawing selection: glBlitFramebuffer -- invalid operation) created by chimerax-bug-report@…
[…]

Apr 15, 2019:

7:34 PM Ticket #1571 (Undo selection buggy) closed by Conrad Huang
fixed: Fixed in 979d57d40. Problem was that updating the …
6:03 PM Ticket #1661 (Support adding state managers from bundles) closed by Conrad Huang
fixed: New API implemented and committed 040c391a4.
4:27 PM Ticket #1850 (ParmEd) created by Tristan Croll
I’m going to need to start using ParmEd (part of the AmberTools suite, …
3:45 PM Ticket #1848 (Clipper not a supported wheel on this platform) closed by Tristan Croll
not a bug: This is just simple user error. The only people who have access to …
3:44 PM Ticket #1849 (String decoding of BLAST results no longer necessary) closed by pett
fixed: Conrad fixed this yesterday
3:15 PM Ticket #1847 (Either: Tempy broken, or Registration internal error -- dealer's choice) closed by pett
duplicate: dup of #1846
3:06 PM Ticket #1849 (String decoding of BLAST results no longer necessary) created by Elaine Meng
[…]
1:05 PM Ticket #1848 (Clipper not a supported wheel on this platform) created by chimerax-bug-report@…
[…]
12:09 PM Ticket #1847 (Either: Tempy broken, or Registration internal error -- dealer's choice) created by chimerax-bug-report@…
[…]
12:06 PM Ticket #1846 (Either: Tempy broken, or Registration internal error -- dealer's choice) created by chimerax-bug-report@…
[…]
6:48 AM Ticket #1845 ("toolshed install" errors reporting to status bar rather than log) created by Tristan Croll
Related to #1819, in recent builds all the warnings and traceback when …

Apr 12, 2019:

4:02 PM ChangeLog edited by pett
(diff)
4:01 PM Ticket #1483 (Allow web service request to be blocking) closed by Conrad Huang
fixed: Fixed in 3bad659e3. Added blocking keyword to …
10:41 AM Ticket #1844 (Toolshed cache KeyError crashes startup from app icon) created by nmforino@…
[…]
7:28 AM Ticket #1843 (Move selected models uses wrong coordinates if parent model moved in scene) created by Tristan Croll
If I open an NMR ensemble and apply some transform to the group: …

Apr 11, 2019:

6:07 PM Ticket #1800 (error reading DICOM CT: TypeError: Cannot cast ufunc multiply output) closed by Tom Goddard
fixed: Fixed. Problem was with floating point dicom scaling factor applied …
5:50 PM Ticket #1801 (error reading DICOM RTDOSE: tuple object not callable) closed by Tom Goddard
fixed: Fixed. Typo in new dicom plane reading code that only effect data …
5:19 PM Ticket #1799 (error reading DICOM SEG models: IndexError: tuple index out of range) closed by Tom Goddard
fixed: Fixed. New code to read dicom maps a plane at a time didn't properly …
4:35 PM Ticket #1842 (Session save: Unable to restore objects of ImageDrawing class in ...) created by Elaine Meng
[…]
1:00 PM Ticket #1841 (Wrong vertex indices in wavefront OBJ files with multiple objects) closed by Tom Goddard
fixed: Fixed.
1:00 PM Ticket #1841 (Wrong vertex indices in wavefront OBJ files with multiple objects) created by danielt@…
Saving an OBJ file with multiple models uses face vertex indices that …
12:03 PM Ticket #1823 (saved image silhouette width too fat) reopened by Tom Goddard
I think in all case the user really does want the silhouette width and …
11:44 AM Ticket #232 (Model panel slows down movie recording) closed by pett
wontfix: I don't think 1a0m ever draws that fast anymore. Having never opened …
10:34 AM Ticket #1839 (Modeller interface option using wrong settings name) closed by pett
fixed

Apr 10, 2019:

7:03 PM Ticket #1796 (Some kind of crash on the GPU) closed by Tom Goddard
nonchimerax: MacBook Pro 15,3 graphics driver crash, macOS mojave, AMD Radeon Pro …
6:17 PM Ticket #1812 (Changing lighting of MRC volume: 'numpy.float64' object cannot be ...) closed by Tom Goddard
duplicate: Fixed. Duplicate of #1600.
5:48 PM Ticket #1818 (Normals incorrect for instanced objects different scaling along each axis) closed by Tom Goddard
wontfix: You are right the graphics rendering assumes the Model position is …
5:29 PM Ticket #1821 (surface-center marker placement: cannot import name 'surface' from ...) closed by Tom Goddard
fixed
5:25 PM Ticket #1823 (saved image silhouette width too fat) closed by Tom Goddard
not a bug: Silhouette width is specified in pixels. If an image is saved with …
5:05 PM Ticket #1828 (2dlabels: Too many arguments to QFont() call) closed by Tom Goddard
duplicate: Duplicate. Fixed long ago.
4:57 PM Ticket #1829 (Views restored from sessions: self.positions key is None) closed by Tom Goddard
fixed: Fixed. I believe this bug is caused by making a named view, then …
4:36 PM Ticket #1830 ('vop' alias not known/registered with only molmap (and not 'volume') ...) closed by Tom Goddard
fixed: Fixed. vop is an alias for the volume command and it was not being …
2:46 PM ChangeLog edited by Elaine Meng
(diff)
12:08 PM Ticket #1840 (Session restore with BILD objects: Unable to restore objects of ...) created by kovacs.bertalan@…
[…] c1.0_drawing.bild
11:23 AM Ticket #1839 (Modeller interface option using wrong settings name) created by Elaine Meng
[…]

Apr 9, 2019:

4:13 PM Ticket #1838 (Session close/reset: NameError: name 'task' is not defined) created by Elaine Meng
[…]
2:44 PM Ticket #1837 (modeller cannot use template that differs from its associated sequence) closed by pett
fixed: Fixed by same change that fixed #1834
2:20 PM Ticket #1837 (modeller cannot use template that differs from its associated sequence) created by Elaine Meng
Example open …
12:55 PM Ticket #1834 (Modeller backend failure) closed by pett
fixed: Code assumed that chain associations started at the beginning of the …
11:02 AM Ticket #1836 ("toolshed uninstall": JSONDecodeError) created by tic20@…
[…]
8:44 AM Ticket #760 (ChimeraX/Isolde error: can't import clipper) closed by Tristan Croll
fixed: Cleaning up old ticket - ISOLDE and Clipper have been available for …
8:42 AM Ticket #1279 (Problem installing Clipper bundle) closed by Tristan Croll
not a bug: Just cleaning up old tickets.
8:41 AM Ticket #1328 (User-supplied template CYX does not match the residue 60 (CYS)) closed by Tristan Croll
fixed: Ancient ticket, long since fixed.
8:41 AM Ticket #1774 (Various errors) closed by Tristan Croll
fixed: If ISOLDE's gui panel is closed when a simulation is running, it now …

Apr 8, 2019:

5:25 PM Ticket #1833 (Modeller: Item in 'polymeric_res_names' arg is not a string) closed by pett
fixed: Okay, there is not _inherent_ restriction of the number of model when …
3:48 PM Ticket #1335 (Python testing scripts: 'session' not available) closed by Greg Couch
fixed: testing scripts renamed to cxtest.py
3:46 PM Ticket #1616 (Session restore: msgpack: max_ext_len exceeded) closed by Greg Couch
fixed: Fixed!
3:41 PM Ticket #1831 (Bundles registering file formats are always imported on startup) closed by Greg Couch
fixed: Added has_(open|export)_func() that tests for existence of …
3:23 PM Ticket #1825 (mmCIF 6mit hangs) closed by Greg Couch
fixed: Added timeout to fetch_file. Using a minute as the default, and 15 …
3:22 PM Ticket #1835 (ISOLDE installation: UnicodeDecodeError) closed by pett
duplicate: Workaround already in ISOLDE FAQ
3:18 PM Ticket #1835 (ISOLDE installation: UnicodeDecodeError) created by chimerax-bug-report@…
[…]
2:44 PM Ticket #1834 (Modeller backend failure) created by Elaine Meng
[…] dimer-monomer-super.cxs
1:01 PM Ticket #1833 (Modeller: Item in 'polymeric_res_names' arg is not a string) created by Elaine Meng
[…] nhase-modeling.cxs
11:54 AM Ticket #937 (Allow color command to color by atom properties) closed by pett
fixed: "color byattribute" implemented awhile back now
11:24 AM Ticket #1832 (auto-seq-struct association only happens if sequence opened first) created by Elaine Meng
Automatic association happens if the sequence alignment is opened …
11:00 AM Ticket #1831 (Bundles registering file formats are always imported on startup) created by Conrad Huang
Bundles registering file formats are always imported on startup even …

Apr 7, 2019:

8:53 PM Ticket #1830 ('vop' alias not known/registered with only molmap (and not 'volume') ...) created by chimerax-bug-report@…
[…]
3:38 PM Ticket #1829 (Views restored from sessions: self.positions key is None) created by glander@…
[…] cartoon-stepV2.cxs

Apr 6, 2019:

7:44 AM Ticket #1828 (2dlabels: Too many arguments to QFont() call) created by chimerax-bug-report@…
[…]

Apr 5, 2019:

1:33 PM Ticket #1661 (Support adding state managers from bundles) reopened by Conrad Huang
Implementation was incorrect because it always initialized providers …
11:37 AM Ticket #1827 (Allow toolshed to be queried for providers) created by pett
A manager may wish to know all possible providers, rather than simply …
11:32 AM Ticket #1826 ('Session' object has no attribute 'preset_mgr') closed by pett
duplicate: Hi Julia, This problem was fixed about a month ago, so if you get a …
10:11 AM Ticket #1824 (Qt crash) closed by pett
can't reproduce
5:24 AM Ticket #1826 ('Session' object has no attribute 'preset_mgr') created by juliA.kowal@…
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4:33 AM Ticket #1825 (mmCIF 6mit hangs) created by tic20@…
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12:39 AM Ticket #1824 (Qt crash) created by chimerax-bug-report@…
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